HHsearch alignment for GI: 254780474 and conserved domain: MTH00027
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=396.08 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=175.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 21 Ql~fQd~aSpime~i~~fHd~~m~ii~~I~~~v~~~l~~~~~~~~~~----~~~~~~~~n~~lEiiWTiiP~lILi~ia~ 96 (249)
T MTH00027 21 QLGFQDAGSPVMEEIIMLHDQILFILTIIVGVVLWLIIRILLGNNYY----SYYWNKLDGSLIEVIWTLIPAFILILIAF 96 (249)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 34898979989999999986999999999999999999999851444----44344557705048999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC-----------------------CCCEEE
Q ss_conf 999887751344420000124467888886689999984369999626787-----------------------743068
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV-----------------------AIINEL 168 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi-----------------------atvneL 168 (332)
T Consensus 97 PS~~lLy~~de~-------------~~~p~~tiKv~G~QWyWsYeY~d~~~~~~~fdSymi~~~~~~~g~~rLL~vDn~l 163 (249)
T MTH00027 97 PSLRLLYIMDEC-------------GFSANITIKVTGHQWYWSYSYEDYGEKNIEFDSYMIPTADLEFGDLRLLEVDNRL 163 (249)
T ss_pred HHHHHHHHHCCC-------------CCCCCEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCE
T ss_conf 999999983214-------------7998779999998767889867677765314532257021357874010577627
Q ss_pred EEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHH
Q ss_conf 96369828999983581011022010740311698514899994277489666133265761136589997088999999
Q gi|254780474|r 169 VVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDW 248 (332)
Q Consensus 169 ~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~W 248 (332)
T Consensus 164 VlP~~~~Ir~lvTS~DViHS~~vP~lg~K~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~v~~v~~~~f~~W 243 (249)
T MTH00027 164 ILPVDTNVRVLITAADVLHSWTVPSLAVKMDAVPGRINETGFLIKRPGIFYGQCSEICGANHSFMPIVVESVSLSKYIDW 243 (249)
T ss_pred EEEECCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEHHHCCCCCCCCCEEEEEECHHHHHHH
T ss_conf 88515549999571422032015644732125798307899981797779997088818781568479999899999999
Q ss_pred HHHHH
Q ss_conf 99986
Q gi|254780474|r 249 ISKVK 253 (332)
Q Consensus 249 v~~~k 253 (332)
T Consensus 244 l~~q~ 248 (249)
T MTH00027 244 IGRED 248 (249)
T ss_pred HHHCC
T ss_conf 82168