HHsearch alignment for GI: 254780474 and conserved domain: MTH00027

>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=396.08  Aligned_cols=205  Identities=20%  Similarity=0.305  Sum_probs=175.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus        21 Ql~fQd~aSpime~i~~fHd~~m~ii~~I~~~v~~~l~~~~~~~~~~----~~~~~~~~n~~lEiiWTiiP~lILi~ia~   96 (249)
T MTH00027         21 QLGFQDAGSPVMEEIIMLHDQILFILTIIVGVVLWLIIRILLGNNYY----SYYWNKLDGSLIEVIWTLIPAFILILIAF   96 (249)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             34898979989999999986999999999999999999999851444----44344557705048999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC-----------------------CCCEEE
Q ss_conf             999887751344420000124467888886689999984369999626787-----------------------743068
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV-----------------------AIINEL  168 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi-----------------------atvneL  168 (332)
T Consensus        97 PS~~lLy~~de~-------------~~~p~~tiKv~G~QWyWsYeY~d~~~~~~~fdSymi~~~~~~~g~~rLL~vDn~l  163 (249)
T MTH00027         97 PSLRLLYIMDEC-------------GFSANITIKVTGHQWYWSYSYEDYGEKNIEFDSYMIPTADLEFGDLRLLEVDNRL  163 (249)
T ss_pred             HHHHHHHHHCCC-------------CCCCCEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCE
T ss_conf             999999983214-------------7998779999998767889867677765314532257021357874010577627


Q ss_pred             EEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHH
Q ss_conf             96369828999983581011022010740311698514899994277489666133265761136589997088999999
Q gi|254780474|r  169 VVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDW  248 (332)
Q Consensus       169 ~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~W  248 (332)
T Consensus       164 VlP~~~~Ir~lvTS~DViHS~~vP~lg~K~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~v~~v~~~~f~~W  243 (249)
T MTH00027        164 ILPVDTNVRVLITAADVLHSWTVPSLAVKMDAVPGRINETGFLIKRPGIFYGQCSEICGANHSFMPIVVESVSLSKYIDW  243 (249)
T ss_pred             EEEECCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEHHHCCCCCCCCCEEEEEECHHHHHHH
T ss_conf             88515549999571422032015644732125798307899981797779997088818781568479999899999999


Q ss_pred             HHHHH
Q ss_conf             99986
Q gi|254780474|r  249 ISKVK  253 (332)
Q Consensus       249 v~~~k  253 (332)
T Consensus       244 l~~q~  248 (249)
T MTH00027        244 IGRED  248 (249)
T ss_pred             HHHCC
T ss_conf             82168