HHsearch alignment for GI: 254780474 and conserved domain: MTH00047
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=374.92 Aligned_cols=169 Identities=20% Similarity=0.363 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
Q ss_conf 99999999999999998853046777777875345661255302278999999999999887751344420000124467
Q gi|254780474|r 56 LMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSI 135 (332)
Q Consensus 56 l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~ 135 (332)
T Consensus 15 i~l~v~v~~~v-~~~~~~~~~~~~~~~~~~---~~n~~LEi~WTiiP~iil~~l~~~s~~~l~~~~-------------- 76 (193)
T MTH00047 15 LALCVFIPCWV-YVVLCWQVYVGNGSVNLG---SENQVLEFLWTVVPTLIVLVLCFLNLNFITYDL-------------- 76 (193)
T ss_pred HHHHHHHHHHH-HHHHHHHHCCCCCCCCCC---CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_conf 99999999999-999999980476656647---888177402799999999999999999998354--------------
Q ss_pred CCCCCCEEEEEEEEEEEEEEEECCCC---------CCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCE
Q ss_conf 88888668999998436999962678---------774306896369828999983581011022010740311698514
Q gi|254780474|r 136 AKNSKPLVVEVVALDWKWLFLLPEQQ---------VAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMET 206 (332)
Q Consensus 136 ~~~~~~l~I~V~a~qW~W~F~YP~~g---------iatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t 206 (332)
T Consensus 77 -~~~~~~~ikV~G~QW~W~~~Ypd~~~ds~~~~~~~~vdn~l~lP~~~~v~~~ltS~DViHSf~VP~l~~K~DavPGr~n 155 (193)
T MTH00047 77 -DCFSSETIKVVGHQWYWSYEYSNGSYDSFMTDDIFGVDKPLRLVYGVPYHLLVTSSDVIHSFSVPDLNLKMDAIPGRIN 155 (193)
T ss_pred -CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCEECCCCCCEEECCCCCEE
T ss_conf -6798705999999899999968976445655422157774897169879999996874322651322727625898359
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHH
Q ss_conf 8999942774896661332657611365899970889
Q gi|254780474|r 207 KLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEK 243 (332)
Q Consensus 207 ~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~ 243 (332)
T Consensus 156 ~~~~~~~~~G~y~g~CsElCG~~Hs~M~~~Ve~v~~~ 192 (193)
T MTH00047 156 HLFFCPDRHGVFVGYCSELCGVGHSYMPIVIEVVKNS 192 (193)
T ss_pred EEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECCC
T ss_conf 9999889967899987788371606792799997279