HHsearch alignment for GI: 254780474 and conserved domain: MTH00076

>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=407.85  Aligned_cols=201  Identities=21%  Similarity=0.338  Sum_probs=178.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 qlgfqd~aSpime~i~~fhd~~m~i~~~I~~~V~~~~~~~~~~k~~~~~-------~~~~~~LEi~WTiiP~iIl~~ia~   78 (228)
T MTH00076          6 QLGFQDAASPIMEELLHFHDHALMAVFLISTLVLYIITIMMTTKLTNTN-------AMDAQEIEMVWTIMPAIILIVIAL   78 (228)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf             1799886899999999999899999999999999999999997147787-------878955302489999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf             99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l  170 (332)
T Consensus        79 pS~~~ly~~~~--------------~~~~~~tikv~G~QWyW~yeY~d~~~~~~dSym~~~~~~~~g~~rll~vdn~lvl  144 (228)
T MTH00076         79 PSLRILYLMDE--------------INDPHLTVKAIGHQWYWSYEYTNYEDLSFDSYMIPTQDLTPGQFRLLEVDNRMVV  144 (228)
T ss_pred             HHHHHHHHCCC--------------CCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEE
T ss_conf             99999982534--------------6798633100144457778834677723245667601026787234215675287


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       145 P~~~~Vr~~itS~DViHsf~vP~lg~K~DavPG~~n~~~~~~~~~G~y~g~CsElCG~~Hs~M~~~v~~v~~~~f~~W~~  224 (228)
T MTH00076        145 PMESPIRMLITAEDVLHSWAVPSLGIKTDAIPGRLNQTTFIASRPGVYYGQCSEICGANHSFMPIVVEATPLKNFLNWSS  224 (228)
T ss_pred             EECCEEEEEEECCCCCEEEECCCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf             60002889988153212243441273310479821789998289887999808873957278827999989999999998


Q ss_pred             HHH
Q ss_conf             986
Q gi|254780474|r  251 KVK  253 (332)
Q Consensus       251 ~~k  253 (332)
T Consensus       225 ~~~  227 (228)
T MTH00076        225 SML  227 (228)
T ss_pred             HCC
T ss_conf             545