HHsearch alignment for GI: 254780474 and conserved domain: MTH00076
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=407.85 Aligned_cols=201 Identities=21% Similarity=0.338 Sum_probs=178.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 qlgfqd~aSpime~i~~fhd~~m~i~~~I~~~V~~~~~~~~~~k~~~~~-------~~~~~~LEi~WTiiP~iIl~~ia~ 78 (228)
T MTH00076 6 QLGFQDAASPIMEELLHFHDHALMAVFLISTLVLYIITIMMTTKLTNTN-------AMDAQEIEMVWTIMPAIILIVIAL 78 (228)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 1799886899999999999899999999999999999999997147787-------878955302489999999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
T Consensus 79 pS~~~ly~~~~--------------~~~~~~tikv~G~QWyW~yeY~d~~~~~~dSym~~~~~~~~g~~rll~vdn~lvl 144 (228)
T MTH00076 79 PSLRILYLMDE--------------INDPHLTVKAIGHQWYWSYEYTNYEDLSFDSYMIPTQDLTPGQFRLLEVDNRMVV 144 (228)
T ss_pred HHHHHHHHCCC--------------CCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEE
T ss_conf 99999982534--------------6798633100144457778834677723245667601026787234215675287
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~Vr~~itS~DViHsf~vP~lg~K~DavPG~~n~~~~~~~~~G~y~g~CsElCG~~Hs~M~~~v~~v~~~~f~~W~~ 224 (228)
T MTH00076 145 PMESPIRMLITAEDVLHSWAVPSLGIKTDAIPGRLNQTTFIASRPGVYYGQCSEICGANHSFMPIVVEATPLKNFLNWSS 224 (228)
T ss_pred EECCEEEEEEECCCCCEEEECCCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 60002889988153212243441273310479821789998289887999808873957278827999989999999998
Q ss_pred HHH
Q ss_conf 986
Q gi|254780474|r 251 KVK 253 (332)
Q Consensus 251 ~~k 253 (332)
T Consensus 225 ~~~ 227 (228)
T MTH00076 225 SML 227 (228)
T ss_pred HCC
T ss_conf 545