HHsearch alignment for GI: 254780474 and conserved domain: MTH00080
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=392.92 Aligned_cols=201 Identities=21% Similarity=0.301 Sum_probs=161.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 26898989999999999999999999999999999998853046777777875345661255302278999999999999
Q gi|254780474|r 35 VMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITW 114 (332)
Q Consensus 35 ~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t~ 114 (332)
T Consensus 8 l~~~~s~~~~~~~~~h~f~~~~i~~i~--ii~~~v~~~i~~~~~~~~--~~~~~~~n~~LEiiWTiiP~lILi~la~pS~ 83 (231)
T MTH00080 8 LNFSNSLFSSYMDWFHNFNCSVLFGEF--VLAFVVFIFVYLISSNFY--FKSKKIHYQFLELLWTVFPVLILLMLGVPSL 83 (231)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778887766899999999999999999--999999999999983689--8662537864279999999999999999999
Q ss_pred HHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEEECC
Q ss_conf 88775134442000012446788888668999998436999962678---------------------774306896369
Q gi|254780474|r 115 DATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVVPID 173 (332)
Q Consensus 115 ~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~lPv~ 173 (332)
T Consensus 84 ~~ly~~~~~-------------~~~~~ltIkv~G~QWyW~yeY~d~~~~~fdSym~~~~~~~~g~~rlL~vdn~lvlP~~ 150 (231)
T MTH00080 84 KLLYYYGLM-------------NFDSNLTVKVTGHQWYWSYEFSDIPGLEFDSYMKSLDQLRLGEPRLLEVDNRCVLPCD 150 (231)
T ss_pred HHHHHHCCC-------------CCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEC
T ss_conf 999983552-------------6899858999999633899957998831224425443124688604623462366542
Q ss_pred CEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 8289999835810110220107403116985148999942774896661332657611365899970889999999998
Q gi|254780474|r 174 RPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV 252 (332)
Q Consensus 174 ~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ 252 (332)
T Consensus 151 ~~vr~~itS~DViHSf~vP~lg~K~DavPGr~n~~~~~~~~~G~y~gqCsE~CG~~Hs~M~i~v~~~~~~~f~~Wlk~~ 229 (231)
T MTH00080 151 TNIRFCITSSDVIHSWALPSLSIKMDAMPGRLNTLSYSFPMPGVFYGQCSEICGANHSFMPIALEVTSLDNFKEWCKGL 229 (231)
T ss_pred CEEEEEEEECCCCEEEECCCCCCEEECCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 4379888607532014213117330047983178999838988999985775081615793599998899999999863