HHsearch alignment for GI: 254780474 and conserved domain: MTH00098
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated.
Probab=100.00 E-value=0 Score=405.66 Aligned_cols=200 Identities=19% Similarity=0.317 Sum_probs=177.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 Ql~fqd~aSp~~e~l~~fHd~~m~i~~~I~~~V~~~l~~~~~~k~~~-------~~~~~~~~LEi~WTiiP~liL~~ia~ 78 (227)
T MTH00098 6 QLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTH-------TSTMDAQEVETIWTILPAIILILIAL 78 (227)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 36888989989999999985799999999999999999999714565-------65667724430069999999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
T Consensus 79 ps~~~ly~~~~--------------~~~~~ltvkv~G~QWyW~yeY~d~~~~~fdSym~~~~~~~~g~~rll~vdn~lvl 144 (227)
T MTH00098 79 PSLRILYMMDE--------------INNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTQDLKPGELRLLEVDNRVVL 144 (227)
T ss_pred HHHHHHHHHCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCEEEEECCCCHHHCCCCCCEEEECCCCEEE
T ss_conf 99999997023--------------6899879999998757999758888605552346710148887137722684598
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~v~~~itS~DViHSf~vP~lg~K~DavPGr~~~~~~~~~~~G~~~g~CsE~CG~~Hs~M~~~v~v~~~~~f~~W~~ 224 (227)
T MTH00098 145 PMEMPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLTSTRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSA 224 (227)
T ss_pred EEEEEEEEEEECCCCHHEEECCCCCEEEECCCCCEEEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf 52208999965596132375442045640469821689998189888999808881904128837999988999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780474|r 251 KV 252 (332)
Q Consensus 251 ~~ 252 (332)
T Consensus 225 ~~ 226 (227)
T MTH00098 225 SM 226 (227)
T ss_pred HH
T ss_conf 51