HHsearch alignment for GI: 254780474 and conserved domain: MTH00139
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=412.30 Aligned_cols=197 Identities=19% Similarity=0.326 Sum_probs=177.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 32689898999999999999999999999999999999885304677777787534566125530227899999999999
Q gi|254780474|r 34 IVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVIT 113 (332)
Q Consensus 34 ~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t 113 (332)
T Consensus 4 ~fq~~~S~~me~i~~fhd~~~~i~~~I~~~V~~~~~~~~~~~~~~~~-------~~~n~~lEi~WTiiP~iiL~~la~ps 76 (223)
T MTH00139 4 WFQDGASPLMEQTIFFHDYVMIFLVVVLTLVLYASIWLLYNSFTSRT-------LLESHQLEVAWTLLPAVVLIFLALPS 76 (223)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27798998999999999999999999999999999999994678677-------74750123578999999999999999
Q ss_pred HHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC-----------------------CCCCEEEEE
Q ss_conf 988775134442000012446788888668999998436999962678-----------------------774306896
Q gi|254780474|r 114 WDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ-----------------------VAIINELVV 170 (332)
Q Consensus 114 ~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g-----------------------iatvneL~l 170 (332)
T Consensus 77 ~~~ly~~~~--------------~~~~~~~ikV~G~QWyW~yeY~d~~~~~~~~dsym~~~~~~~~g~~rll~vdn~lvl 142 (223)
T MTH00139 77 LNLLYLSDN--------------VLDPSITLKVVGHQWFWSYEYSDFPNGPLEFDSYMVPSSDLSSGDFRLLEVDNRIVL 142 (223)
T ss_pred HHHHHHHCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCHHHCCCCCCCEECCCCCEEE
T ss_conf 999986121--------------689862589999877788864777898321550336700104576320314773253
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 143 P~~~~vr~~itS~DViHSf~vP~lgvK~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~v~~v~~~~f~~Wv~ 222 (223)
T MTH00139 143 PSGSNIRALVTSADVIHSWSVPSLGVKIDAIPGRLNSLSFFSNRVGVYYGQCSEICGANHSFMPICVEFILPQSFIEWVL 222 (223)
T ss_pred ECCCEEEEEEEECCCCEEEECCCCCEEECCCCCCEEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHC
T ss_conf 01301489996075432232341261510699962899999289677999885445815068937999988999999965
Q ss_pred H
Q ss_conf 9
Q gi|254780474|r 251 K 251 (332)
Q Consensus 251 ~ 251 (332)
T Consensus 223 E 223 (223)
T MTH00139 223 E 223 (223)
T ss_pred C
T ss_conf 9