HHsearch alignment for GI: 254780474 and conserved domain: MTH00139

>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=412.30  Aligned_cols=197  Identities=19%  Similarity=0.326  Sum_probs=177.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf             32689898999999999999999999999999999999885304677777787534566125530227899999999999
Q gi|254780474|r   34 IVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVIT  113 (332)
Q Consensus        34 ~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t  113 (332)
T Consensus         4 ~fq~~~S~~me~i~~fhd~~~~i~~~I~~~V~~~~~~~~~~~~~~~~-------~~~n~~lEi~WTiiP~iiL~~la~ps   76 (223)
T MTH00139          4 WFQDGASPLMEQTIFFHDYVMIFLVVVLTLVLYASIWLLYNSFTSRT-------LLESHQLEVAWTLLPAVVLIFLALPS   76 (223)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             27798998999999999999999999999999999999994678677-------74750123578999999999999999


Q ss_pred             HHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC-----------------------CCCCEEEEE
Q ss_conf             988775134442000012446788888668999998436999962678-----------------------774306896
Q gi|254780474|r  114 WDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ-----------------------VAIINELVV  170 (332)
Q Consensus       114 ~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g-----------------------iatvneL~l  170 (332)
T Consensus        77 ~~~ly~~~~--------------~~~~~~~ikV~G~QWyW~yeY~d~~~~~~~~dsym~~~~~~~~g~~rll~vdn~lvl  142 (223)
T MTH00139         77 LNLLYLSDN--------------VLDPSITLKVVGHQWFWSYEYSDFPNGPLEFDSYMVPSSDLSSGDFRLLEVDNRIVL  142 (223)
T ss_pred             HHHHHHHCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCHHHCCCCCCCEECCCCCEEE
T ss_conf             999986121--------------689862589999877788864777898321550336700104576320314773253


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       143 P~~~~vr~~itS~DViHSf~vP~lgvK~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~v~~v~~~~f~~Wv~  222 (223)
T MTH00139        143 PSGSNIRALVTSADVIHSWSVPSLGVKIDAIPGRLNSLSFFSNRVGVYYGQCSEICGANHSFMPICVEFILPQSFIEWVL  222 (223)
T ss_pred             ECCCEEEEEEEECCCCEEEECCCCCEEECCCCCCEEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHC
T ss_conf             01301489996075432232341261510699962899999289677999885445815068937999988999999965


Q ss_pred             H
Q ss_conf             9
Q gi|254780474|r  251 K  251 (332)
Q Consensus       251 ~  251 (332)
T Consensus       223 E  223 (223)
T MTH00139        223 E  223 (223)
T ss_pred             C
T ss_conf             9