HHsearch alignment for GI: 254780474 and conserved domain: MTH00168

>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=407.61  Aligned_cols=199  Identities=19%  Similarity=0.348  Sum_probs=172.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 ql~fq~~~S~~m~~i~~~Hd~~m~ii~~I~~~V~~~~~~~~~----~~~~---~~~~~~~~~LEiiWTiiP~iiL~~la~   78 (225)
T MTH00168          6 QLGLQDAASPVMEEMVLFHDHVLLVLVFILCLIFYSMLVLSS----SKYV---YRFYTDSHVIETVWTVIPAFILVVLAL   78 (225)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCC---CCCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf             079988689999999999879999999999999999999997----2688---553557826751288889999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC---------------------CCCEEEEE
Q ss_conf             999887751344420000124467888886689999984369999626787---------------------74306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV---------------------AIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi---------------------atvneL~l  170 (332)
T Consensus        79 ps~~~ly~~~~--------------~~~~~~~ikv~G~QW~W~yeY~d~~~~~~dsym~~~~~~~~g~~rll~vDn~lvl  144 (225)
T MTH00168         79 PSLKLLYLMDE--------------LDSPDLTIKAVGHQWYWSYEYGDYYDIEFDSYMLPLGDLSGGDFRLLEVDNRVVL  144 (225)
T ss_pred             HHHHHHHCCCC--------------CCCCCEEEEEEEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf             99999854564--------------6888557999998778998804777641201056722125775057604671687


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       145 P~~~~Vr~~itS~DViHS~~vP~lg~K~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~v~~vs~~~f~~Wv~  224 (225)
T MTH00168        145 PVDTSIRMLVTSADVIHSWTLPSLGLKVDAVPGRLNQLALQSSRPGSFYGQCSEICGANHSFMPIHVEAVPWETFESWCD  224 (225)
T ss_pred             EEEEEEEEEEECCCCCEEEECCCCCCEECCCCCCEEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHC
T ss_conf             65038999965374311243341251501699867999998699777999717766832368957999988999999866


Q ss_pred             H
Q ss_conf             9
Q gi|254780474|r  251 K  251 (332)
Q Consensus       251 ~  251 (332)
T Consensus       225 t  225 (225)
T MTH00168        225 T  225 (225)
T ss_pred             C
T ss_conf             7