HHsearch alignment for GI: 254780474 and conserved domain: MTH00168
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=407.61 Aligned_cols=199 Identities=19% Similarity=0.348 Sum_probs=172.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 ql~fq~~~S~~m~~i~~~Hd~~m~ii~~I~~~V~~~~~~~~~----~~~~---~~~~~~~~~LEiiWTiiP~iiL~~la~ 78 (225)
T MTH00168 6 QLGLQDAASPVMEEMVLFHDHVLLVLVFILCLIFYSMLVLSS----SKYV---YRFYTDSHVIETVWTVIPAFILVVLAL 78 (225)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCC---CCCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 079988689999999999879999999999999999999997----2688---553557826751288889999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC---------------------CCCEEEEE
Q ss_conf 999887751344420000124467888886689999984369999626787---------------------74306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV---------------------AIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi---------------------atvneL~l 170 (332)
T Consensus 79 ps~~~ly~~~~--------------~~~~~~~ikv~G~QW~W~yeY~d~~~~~~dsym~~~~~~~~g~~rll~vDn~lvl 144 (225)
T MTH00168 79 PSLKLLYLMDE--------------LDSPDLTIKAVGHQWYWSYEYGDYYDIEFDSYMLPLGDLSGGDFRLLEVDNRVVL 144 (225)
T ss_pred HHHHHHHCCCC--------------CCCCCEEEEEEEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf 99999854564--------------6888557999998778998804777641201056722125775057604671687
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~Vr~~itS~DViHS~~vP~lg~K~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~v~~vs~~~f~~Wv~ 224 (225)
T MTH00168 145 PVDTSIRMLVTSADVIHSWTLPSLGLKVDAVPGRLNQLALQSSRPGSFYGQCSEICGANHSFMPIHVEAVPWETFESWCD 224 (225)
T ss_pred EEEEEEEEEEECCCCCEEEECCCCCCEECCCCCCEEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHC
T ss_conf 65038999965374311243341251501699867999998699777999717766832368957999988999999866
Q ss_pred H
Q ss_conf 9
Q gi|254780474|r 251 K 251 (332)
Q Consensus 251 ~ 251 (332)
T Consensus 225 t 225 (225)
T MTH00168 225 T 225 (225)
T ss_pred C
T ss_conf 7