HHsearch alignment for GI: 254780474 and conserved domain: MTH00185
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=415.83 Aligned_cols=203 Identities=19% Similarity=0.343 Sum_probs=181.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 ql~fqd~aSpime~i~~fHd~~m~i~~~I~~~V~~~~~~~~~~~~~~~-------~~~~~~~LEi~WTiiP~iiL~~ia~ 78 (229)
T MTH00185 6 QLGLQDAASPVMEELIHFHDHTLMIVFLISTLVLYIIVAMVTTKLTNK-------YILDSQEIEIVWTILPAIILIMIAL 78 (229)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 279988589899999999989999999999999999999999647888-------6768712002179999999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
T Consensus 79 pS~~~ly~~d~--------------~~~~~~~ikv~G~QW~W~yeY~d~~~~~~ds~~~~~~~~~~~~~rlL~vdn~lvl 144 (229)
T MTH00185 79 PSLRILYLMDE--------------INDPHLTIKAMGHQWYWSYEYTDYEDLEFDSYMIPTQDLTPGQFRLLETDHRMVV 144 (229)
T ss_pred HHHHHHHHCCC--------------CCCCCEEEEEEEEEEEEEEEECCCCCCCCEECCCCHHHCCCCCCCCCCCCCCEEE
T ss_conf 99999872442--------------4688758999999877789804677742200246622216677312246663598
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~Vr~~itS~DVIHSf~vP~l~~K~DaiPGr~n~~~~~~~~~G~y~g~Cse~CG~~Hs~M~~~v~~v~~~~f~~W~~ 224 (229)
T MTH00185 145 PMESPIRVLITAEDVLHSWTVPALGVKMDAVPGRLNQTAFIISRPGVYYGQCSEICGANHSFMPIVVEAVPLEHFENWSS 224 (229)
T ss_pred EEEEEEEEEEEECCCCEEEECCHHCCEECCCCCCCEEEEEEECCCEEEEEECHHHCCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf 63027999987064310022411053200579830799999379887999857873947068817999988999999997
Q ss_pred HHHCC
Q ss_conf 98607
Q gi|254780474|r 251 KVKRQ 255 (332)
Q Consensus 251 ~~ka~ 255 (332)
T Consensus 225 ~~~~e 229 (229)
T MTH00185 225 LMLEE 229 (229)
T ss_pred HHHCC
T ss_conf 41329