HHsearch alignment for GI: 254780474 and conserved domain: PTZ00047

>PTZ00047 cytochrome C oxidase subunit II; Provisional.
Probab=100.00  E-value=1.2e-33  Score=258.95  Aligned_cols=91  Identities=21%  Similarity=0.354  Sum_probs=88.2

Q ss_pred             CCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             77430689636982899998358101102201074031169851489999427748966613326576113658999708
Q gi|254780474|r  162 VAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS  241 (332)
Q Consensus       162 iatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s  241 (332)
T Consensus        70 LeVDNrLvlPvg~pVr~liTS~DVIHSF~VPslgiK~DaIPGR~n~~~~~~~k~G~Y~GqCaElCG~~Hs~Mpi~Vevvs  149 (163)
T PTZ00047         70 LEVDKRLTLPTRTHIRFLVTATDVIHSWSIPSLGIKADAVPGRLHRINTFILREGVYYGQCSEMCGTLHGFMPIVVEAVS  149 (163)
T ss_pred             ECCCCCEEEECCCEEEEEEEECCCHHHCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEEEHHHHCCCCCCCCEEEEEEC
T ss_conf             52348617028981799998341001100565443655169832799999488957999828871958265837999978


Q ss_pred             HHHHHHHHHHH
Q ss_conf             89999999998
Q gi|254780474|r  242 EKGFEDWISKV  252 (332)
Q Consensus       242 ~~~f~~Wv~~~  252 (332)
T Consensus       150 pE~Y~A~~kk~  160 (163)
T PTZ00047        150 PEKYAAHAKKY  160 (163)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999987