HHsearch alignment for GI: 254780474 and conserved domain: TIGR01432
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II; InterPro: IPR006332 Members of this family catalyze the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in Gram-positive bacteria of the Bacillus/Staphylococcus group . Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes similar to the cytochrome c oxidases (as opposed to cytochromes b).; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006122 mitochondrial electron transport ubiquinol to cytochrome c.
Probab=100.00 E-value=0 Score=443.38 Aligned_cols=225 Identities=35% Similarity=0.651 Sum_probs=211.9
Q ss_pred HHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEE
Q ss_conf 999999987413-643268989899999999999999999999999999999988530467--77777875345661255
Q gi|254780474|r 20 FLFFSSVMLSGF-EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTN--KKARYDPKWCHSTLLEL 96 (332)
Q Consensus 20 ~l~~~~~lLsGC-~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~--~~a~~~p~~~hs~~lEi 96 (332)
T Consensus 2 ~Llg~~~llsGCs~~~vl~~KGPVA~~Q~~LIlySI~FMLvIv~vv~~lF~I~l~KY~~~KgkD~~~~~p~~H~~~~lE~ 81 (229)
T TIGR01432 2 ALLGVVILLSGCSNIEVLNPKGPVAESQSDLILYSIVFMLVIVLVVFVLFTIILVKYRERKGKDNSAYEPEMHGNAILEV 81 (229)
T ss_pred HHHEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHH
T ss_conf 02226642335766347668888445542015678999999999999988875322000135454445876455420003
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEE
Q ss_conf 30227899999999999988775134442000012446788888668999998436999962678774306896369828
Q gi|254780474|r 97 FVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPL 176 (332)
Q Consensus 97 ~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV 176 (332)
T Consensus 82 ~W~vIPi~IV~ALaiPTV~T~Y~~E~a---------P~~t~~KdP~vvYA~S~d~KW~FsYPd~~IETVN~l~IP~DRPv 152 (229)
T TIGR01432 82 VWTVIPIIIVIALAIPTVKTIYDLEKA---------PKATKEKDPLVVYATSADWKWVFSYPDEDIETVNYLNIPKDRPV 152 (229)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCC---------CCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf 545899999987303524555224678---------75556899879998751817887468987223444527899856
Q ss_pred EEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 99998358101102201074031169851489999427748966613326576113658999708899999999986
Q gi|254780474|r 177 EFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVK 253 (332)
Q Consensus 177 ~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~k 253 (332)
T Consensus 153 lfKl~s~DtMtS~WiPQLGGQKYAM~GM~M~~~L~A~~~GTy~GRNaNF~GEgFa~Q~F~V~A~s~KDf~~WvK~~~ 229 (229)
T TIGR01432 153 LFKLSSADTMTSFWIPQLGGQKYAMAGMTMNLYLQADKVGTYKGRNANFNGEGFADQEFDVNAVSEKDFDKWVKETK 229 (229)
T ss_pred EEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCC
T ss_conf 88721101012202234676156665445654420045565235466657876222325788631211342300379