HHsearch alignment for GI: 254780474 and conserved domain: TIGR01432

>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II; InterPro: IPR006332 Members of this family catalyze the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in Gram-positive bacteria of the Bacillus/Staphylococcus group . Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes similar to the cytochrome c oxidases (as opposed to cytochromes b).; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006122 mitochondrial electron transport ubiquinol to cytochrome c.
Probab=100.00  E-value=0  Score=443.38  Aligned_cols=225  Identities=35%  Similarity=0.651  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEE
Q ss_conf             999999987413-643268989899999999999999999999999999999988530467--77777875345661255
Q gi|254780474|r   20 FLFFSSVMLSGF-EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTN--KKARYDPKWCHSTLLEL   96 (332)
Q Consensus        20 ~l~~~~~lLsGC-~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~--~~a~~~p~~~hs~~lEi   96 (332)
T Consensus         2 ~Llg~~~llsGCs~~~vl~~KGPVA~~Q~~LIlySI~FMLvIv~vv~~lF~I~l~KY~~~KgkD~~~~~p~~H~~~~lE~   81 (229)
T TIGR01432         2 ALLGVVILLSGCSNIEVLNPKGPVAESQSDLILYSIVFMLVIVLVVFVLFTIILVKYRERKGKDNSAYEPEMHGNAILEV   81 (229)
T ss_pred             HHHEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHH
T ss_conf             02226642335766347668888445542015678999999999999988875322000135454445876455420003


Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEE
Q ss_conf             30227899999999999988775134442000012446788888668999998436999962678774306896369828
Q gi|254780474|r   97 FVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPL  176 (332)
Q Consensus        97 ~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV  176 (332)
T Consensus        82 ~W~vIPi~IV~ALaiPTV~T~Y~~E~a---------P~~t~~KdP~vvYA~S~d~KW~FsYPd~~IETVN~l~IP~DRPv  152 (229)
T TIGR01432        82 VWTVIPIIIVIALAIPTVKTIYDLEKA---------PKATKEKDPLVVYATSADWKWVFSYPDEDIETVNYLNIPKDRPV  152 (229)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHCCCCC---------CCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf             545899999987303524555224678---------75556899879998751817887468987223444527899856


Q ss_pred             EEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             99998358101102201074031169851489999427748966613326576113658999708899999999986
Q gi|254780474|r  177 EFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVK  253 (332)
Q Consensus       177 ~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~k  253 (332)
T Consensus       153 lfKl~s~DtMtS~WiPQLGGQKYAM~GM~M~~~L~A~~~GTy~GRNaNF~GEgFa~Q~F~V~A~s~KDf~~WvK~~~  229 (229)
T TIGR01432       153 LFKLSSADTMTSFWIPQLGGQKYAMAGMTMNLYLQADKVGTYKGRNANFNGEGFADQEFDVNAVSEKDFDKWVKETK  229 (229)
T ss_pred             EEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCC
T ss_conf             88721101012202234676156665445654420045565235466657876222325788631211342300379