HHsearch alignment for GI: 254780474 and conserved domain: pfam00116
>pfam00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain.
Probab=100.00 E-value=8.2e-37 Score=281.54 Aligned_cols=99 Identities=21% Similarity=0.462 Sum_probs=94.4
Q ss_pred EEEEEEEEEEEEEEEECCCCC---------------------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECC
Q ss_conf 689999984369999626787---------------------74306896369828999983581011022010740311
Q gi|254780474|r 142 LVVEVVALDWKWLFLLPEQQV---------------------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYA 200 (332)
Q Consensus 142 l~I~V~a~qW~W~F~YP~~gi---------------------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~da 200 (332)
T Consensus 1 vtIkV~G~QW~W~y~y~~~~~~~~~s~~~~~~d~~~g~~~ll~v~n~lvlP~~~~v~~~ltS~DViHsF~iP~l~~K~Da 80 (120)
T pfam00116 1 VTIKAIGHQWYWSYEYSDFKNIEFDSYMIPEDDLEEGQFRLLEVDNRIVLPMGTEVRFLVTSADVIHSFAVPSLGVKMDA 80 (120)
T ss_pred CEEEEEEEECCEEEEECCCCCCEEEECCCCHHHCCCCCCCEEECCCEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEC
T ss_conf 98999999024799968987841100205721235798633501670899767809799998974540123667758773
Q ss_pred CCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf 6985148999942774896661332657611365899970
Q gi|254780474|r 201 MAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332)
Q Consensus 201 iPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332)
T Consensus 81 iPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~vV 120 (120)
T pfam00116 81 VPGRLNQLTFTINRPGVFYGQCSEICGANHSFMPIVIEVV 120 (120)
T ss_pred CCCCEEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEC
T ss_conf 7983699999548963699982879284606890899989