HHsearch alignment for GI: 254780474 and conserved domain: pfam00116

>pfam00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain.
Probab=100.00  E-value=8.2e-37  Score=281.54  Aligned_cols=99  Identities=21%  Similarity=0.462  Sum_probs=94.4

Q ss_pred             EEEEEEEEEEEEEEEECCCCC---------------------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECC
Q ss_conf             689999984369999626787---------------------74306896369828999983581011022010740311
Q gi|254780474|r  142 LVVEVVALDWKWLFLLPEQQV---------------------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYA  200 (332)
Q Consensus       142 l~I~V~a~qW~W~F~YP~~gi---------------------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~da  200 (332)
T Consensus         1 vtIkV~G~QW~W~y~y~~~~~~~~~s~~~~~~d~~~g~~~ll~v~n~lvlP~~~~v~~~ltS~DViHsF~iP~l~~K~Da   80 (120)
T pfam00116         1 VTIKAIGHQWYWSYEYSDFKNIEFDSYMIPEDDLEEGQFRLLEVDNRIVLPMGTEVRFLVTSADVIHSFAVPSLGVKMDA   80 (120)
T ss_pred             CEEEEEEEECCEEEEECCCCCCEEEECCCCHHHCCCCCCCEEECCCEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEC
T ss_conf             98999999024799968987841100205721235798633501670899767809799998974540123667758773


Q ss_pred             CCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             6985148999942774896661332657611365899970
Q gi|254780474|r  201 MAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK  240 (332)
Q Consensus       201 iPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~  240 (332)
T Consensus        81 iPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~vV  120 (120)
T pfam00116        81 VPGRLNQLTFTINRPGVFYGQCSEICGANHSFMPIVIEVV  120 (120)
T ss_pred             CCCCEEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEC
T ss_conf             7983699999548963699982879284606890899989