HHsearch alignment for GI: 254780474 and conserved domain: pfam02790

>pfam02790 COX2_TM Cytochrome C oxidase subunit II, transmembrane domain. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices.

Probab=98.54  E-value=4.4e-07  Score=70.18  Aligned_cols=77  Identities=12%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 ql~fqd~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~l~~~~~~~~~~-------~~~~~~~~lE~iWTiiP~lILl~ia~   78 (83)
T pfam02790         6 GLNFQDSASPLMEGLIEFHDHTMMILTLILILVSYILVSLLFNKLTN-------RYLLEGQTIEIIWTILPAIILIFIAL   78 (83)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf             26998979999999999988999999999999999999999847475-------55507866521399789999999982


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780474|r  112 ITWD  115 (332)
Q Consensus       112 ~t~~  115 (332)
T Consensus        79 PSl~   82 (83)
T pfam02790        79 PSLR   82 (83)
T ss_pred             HHCC
T ss_conf             2325