HHsearch alignment for GI: 254780474 and conserved domain: pfam06481

>pfam06481 COX_ARM COX Aromatic Rich Motif. COX2 (Cytochrome O ubiquinol OXidase 2) is a major component of the respiratory complex during vegetative growth. It transfers electrons from a quinol to the binuclear centre of the catalytic subunit 1. The function of this region is not known.

Probab=98.97  E-value=2e-10  Score=94.02  Aligned_cols=47  Identities=43%  Similarity=0.699  Sum_probs=44.6

Q ss_pred             HCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCC
Q ss_conf             60724569899999761021263217204783542687315244488
Q gi|254780474|r  253 KRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGK  299 (332)
Q Consensus       253 ka~~~~l~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~~~~~  299 (332)
T Consensus         1 kas~~~L~~~~Y~~La~PSe~~pV~yfssv~~~Lf~~Iv~~~~~~~~   47 (47)
T pfam06481         1 KASPKTLDRATYLALAKPSENNPVEYFSSVDPGLFDDIVNKYMGGGK   47 (47)
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf             98867489999999857764567335525883189999999864899