HHsearch alignment of GI: 254780474 and MMDB domain: 1v54_B_92-227
>1v54_B (B:92-227) Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
Probab=100.00 E-value=4.6e-42 Score=318.42 Aligned_cols=113 Identities=20% Similarity=0.414 Sum_probs=108.1
Q ss_pred CCEEEEEEEEEEEEEEEECCCCCC---------------------CCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEE
Q ss_conf 866899999843699996267877---------------------43068963698289999835810110220107403
Q gi|254780474|r 140 KPLVVEVVALDWKWLFLLPEQQVA---------------------IINELVVPIDRPLEFRITASSVMNSFYIPGLAGQI 198 (332)
Q Consensus 140 ~~l~I~V~a~qW~W~F~YP~~gia---------------------tvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~ 198 (332)
++++|+|+|+||+|.|+||+.++. +.|+|++|+|+||+|.+||+|||||||||+||+|+
T Consensus 2 p~~~I~v~g~Qw~W~f~Yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lP~~~~v~~~itS~DViHSf~vP~l~~K~ 81 (136)
T 1v54_B 2 PSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKT 81 (136)
T ss_dssp CSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEEETTSCEEEEEEESSSCEEEEEGGGTEEE
T ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHCCEEE
T ss_conf 86437862105333346246666645566674300055865311256846984365899999847531014443065554
Q ss_pred CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 116985148999942774896661332657611365899970889999999998
Q gi|254780474|r 199 YAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKV 252 (332)
Q Consensus 199 daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ 252 (332)
||||||.|.+|++++++|+|+|+|+||||.|||.|+|+|+|+++++|++|++++
T Consensus 82 DaiPG~~~~~~~~~~~~G~y~g~C~ElCG~~Hs~M~~~V~vv~~~~f~~W~~~q 135 (136)
T 1v54_B 82 DAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASM 135 (136)
T ss_dssp EECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHT
T ss_pred EHHCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 410483666999907978999986765073035890799998899999999955