Query gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus str. psy62] Match_columns 332 No_of_seqs 221 out of 1420 Neff 5.6 Searched_HMMs 23785 Date Mon May 30 12:13:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780474.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1fft_B Ubiquinol oxidase; elec 100.0 0 0 665.2 13.3 306 11-325 5-312 (315) 2 3hb3_B Cytochrome C oxidase su 100.0 0 0 470.0 23.5 208 35-257 49-280 (298) 3 1cyx_A CYOA; electron transpor 100.0 0 0 464.3 17.5 200 117-325 1-202 (205) 4 2gsm_B Cytochrome C oxidase su 100.0 0 0 439.6 23.5 205 33-253 16-258 (262) 5 1v54_B Cytochrome C oxidase po 100.0 0 0 422.3 22.0 200 32-252 6-226 (227) 6 1xme_B Cytochrome C oxidase po 100.0 2.8E-34 1.2E-38 262.0 11.6 141 91-241 11-168 (168) 7 2cua_A Protein (CUA); CUA cent 99.9 4.5E-25 1.9E-29 196.5 10.6 93 139-241 43-135 (135) 8 1iby_A Nitrosocyanin; RED copp 99.3 1.7E-11 7E-16 100.1 12.0 74 166-241 38-112 (112) 9 1fwx_A Nitrous oxide reductase 98.9 5.5E-09 2.3E-13 82.2 9.0 80 164-243 511-594 (595) 10 1qni_A Nitrous-oxide reductase 98.7 1.9E-07 8E-12 71.2 9.8 78 164-241 499-580 (581) 11 1qhq_A Protein (auracyanin); e 97.2 0.0021 8.6E-08 42.6 8.5 92 141-241 16-140 (140) 12 2aan_A Auracyanin A; cupredoxi 97.1 0.0016 6.6E-08 43.4 7.4 92 138-239 15-138 (139) 13 3c75_A Amicyanin; copper prote 96.9 0.011 4.7E-07 37.3 10.0 70 165-240 59-132 (132) 14 2dv6_A Nitrite reductase; elec 96.7 0.02 8.5E-07 35.5 10.2 72 168-240 57-131 (447) 15 3fsa_A Azurin; copper, cupredo 96.6 0.0036 1.5E-07 40.8 5.7 74 164-240 16-125 (125) 16 2cal_A Rusticyanin; iron respi 96.1 0.041 1.7E-06 33.3 8.9 74 166-240 61-154 (154) 17 2zoo_A Probable nitrite reduct 96.1 0.0001 4.3E-09 51.9 -4.4 145 166-310 204-388 (442) 18 2ov0_A Amicyanin; beta-sandwic 95.6 0.089 3.7E-06 30.9 8.7 83 137-240 16-105 (105) 19 1cuo_A Protein (azurin ISO-2); 95.4 0.068 2.8E-06 31.8 7.7 75 164-240 16-128 (129) 20 1id2_A Amicyanin; beta barrel, 95.2 0.11 4.6E-06 30.3 8.2 68 165-240 33-106 (106) 21 2iaa_C Azurin; quinoprotein, t 95.0 0.11 4.7E-06 30.2 7.7 75 164-240 15-127 (128) 22 1nwp_A Azurin; electron transp 94.8 0.17 7E-06 29.0 8.4 75 164-240 16-128 (128) 23 2ccw_A Azurin II, AZN-2; elect 94.4 0.27 1.1E-05 27.5 8.6 75 164-240 16-128 (129) 24 1pmy_A Pseudoazurin; electron 93.6 0.21 9E-06 28.2 6.8 97 165-269 20-120 (123) 25 1paz_A Pseudoazurin precursor; 93.5 0.19 8E-06 28.6 6.4 97 165-269 20-120 (123) 26 1pcs_A Plastocyanin; electron 93.3 0.38 1.6E-05 26.5 7.6 67 166-240 19-98 (98) 27 3gdc_A Multicopper oxidase; be 92.8 0.27 1.1E-05 27.6 6.2 78 166-243 66-156 (288) 28 2ux6_A Pseudoazurin; type-1 co 92.4 0.58 2.5E-05 25.1 8.1 76 166-247 21-99 (122) 29 1bxv_A Plastocyanin; copper pr 92.3 0.57 2.4E-05 25.2 7.4 68 165-240 18-91 (91) 30 1mzy_A Copper-containing nitri 91.6 0.35 1.5E-05 26.7 5.7 78 166-243 64-154 (333) 31 1oe1_A Dissimilatory copper-co 91.5 0.73 3.1E-05 24.4 7.4 102 142-243 33-154 (336) 32 1kdj_A Plastocyanin; electron 91.5 0.6 2.5E-05 25.0 6.8 70 165-240 16-102 (102) 33 3erx_A Pseudoazurin; copper pr 90.6 0.83 3.5E-05 24.0 6.8 77 166-248 21-102 (123) 34 3ef4_A Pseudoazurin, blue copp 90.6 0.63 2.6E-05 24.9 6.2 84 166-256 22-109 (124) 35 3cvb_A Plastocyanin; cupredoxi 90.5 0.9 3.8E-05 23.8 7.0 71 164-240 17-104 (105) 36 1byp_A Protein (plastocyanin); 90.4 0.91 3.8E-05 23.7 7.6 69 165-239 16-98 (99) 37 1sdd_B Coagulation factor V; c 89.4 1 4.3E-05 23.4 6.5 77 166-243 239-329 (647) 38 1kbv_A ANIA, major outer membr 88.7 0.36 1.5E-05 26.6 3.7 79 165-243 69-158 (327) 39 1b3i_A PETE protein, protein ( 87.8 1.4 5.7E-05 22.5 6.9 68 165-240 18-97 (97) 40 1plc_A Plastocyanin; electron 87.7 1.4 5.9E-05 22.4 8.0 68 164-239 15-98 (99) 41 2gim_A Plastocyanin; beta shee 87.4 1.4 6E-05 22.3 6.6 71 164-240 18-105 (106) 42 2plt_A Plastocyanin; electron 86.9 1.5 6.4E-05 22.2 7.4 68 165-240 17-98 (98) 43 3g5w_A Multicopper oxidase typ 83.6 2.2 9.1E-05 21.1 6.2 60 167-226 179-256 (318) 44 1zpu_A Iron transport multicop 81.3 2.6 0.00011 20.5 6.6 80 165-246 369-485 (534) 45 1iuz_A Plastocyanin; electron 78.9 3.1 0.00013 20.0 8.1 67 166-240 18-98 (98) 46 2bw4_A Copper-containing nitri 73.7 4.2 0.00018 19.0 7.1 77 166-242 71-159 (340) 47 2knc_A Integrin alpha-IIB; tra 67.6 1.6 6.6E-05 22.1 1.2 29 46-74 7-35 (54) 48 2zwn_A Two-domain type laccase 67.0 5.7 0.00024 18.1 8.1 62 165-226 178-257 (339) 49 2r7e_B Coagulation factor VIII 66.7 0.52 2.2E-05 25.5 -1.3 74 167-241 369-456 (770) 50 2j5w_A Ceruloplasmin, ferroxid 65.5 6.1 0.00026 17.9 5.0 73 167-240 272-355 (1065) 51 2bze_A KIAA0252 protein; human 63.9 6.5 0.00028 17.7 4.9 57 195-260 80-136 (153) 52 1x9u_A Umecyanin; cupredoxin, 62.1 7 0.0003 17.4 4.7 31 209-242 73-105 (116) 53 3mk7_C Cytochrome C oxidase, C 58.1 8.2 0.00034 17.0 7.4 24 90-114 50-73 (311) 54 2r7e_A Coagulation factor VIII 52.7 4.4 0.00019 18.9 1.4 75 166-241 244-329 (742) 55 1jer_A Cucumber stellacyanin; 42.9 14 0.00058 15.3 4.0 33 208-243 76-110 (138) 56 1ws8_A Mavicyanin; oxidized fo 42.0 14 0.0006 15.3 4.2 33 208-243 72-106 (109) 57 2k7q_A Filamin-A; IG-like, ABP 41.6 12 0.00049 15.9 2.1 37 207-244 58-94 (191) 58 1sdd_A Coagulation factor V; c 39.9 3.5 0.00015 19.6 -0.7 76 167-243 61-168 (306) 59 1hfu_A Laccase 1; oxidoreducta 38.3 16 0.00068 14.9 6.7 22 167-188 186-207 (503) 60 2w2x_D 1-phosphatidylinositol- 37.0 16 0.00069 14.8 2.3 27 234-260 96-122 (124) 61 2v50_A Multidrug resistance pr 34.7 18 0.00077 14.5 5.6 13 241-253 691-703 (1052) 62 1aoz_A Ascorbate oxidase; oxid 33.6 19 0.0008 14.4 6.2 48 167-214 205-270 (552) 63 3gyc_A Putative glycoside hydr 31.0 8.7 0.00037 16.8 0.1 11 241-251 275-285 (393) 64 1nrg_A Pyridoxine 5'-phosphate 30.9 21 0.00088 14.1 2.3 15 236-250 145-159 (261) 65 2w1k_A Putative sortase; pilus 30.4 8.7 0.00037 16.8 0.0 17 221-240 174-190 (252) 66 1v5p_A Pleckstrin homology dom 29.0 23 0.00095 13.8 3.5 26 234-259 97-122 (126) 67 2kcj_A Pleckstrin homology dom 27.5 24 0.001 13.7 2.4 25 234-258 78-102 (108) 68 2cb8_A Acyl-COA-binding protei 27.3 24 0.001 13.6 3.9 48 240-290 1-51 (87) 69 2k1a_A Integrin alpha-IIB; sin 27.2 24 0.001 13.6 4.0 26 51-76 10-35 (42) 70 1waz_A MERF; protein structure 26.7 25 0.001 13.6 1.9 14 65-78 32-45 (46) 71 2dmb_A Filamin-B; beta-sandwic 26.4 25 0.001 13.5 7.1 72 170-242 25-104 (124) 72 2g23_A PHS, phenoxazinone synt 25.5 26 0.0011 13.4 9.5 21 198-218 328-348 (612) 73 1dro_A Beta-spectrin; cytoskel 25.1 26 0.0011 13.4 2.3 24 233-256 95-118 (122) 74 2bh9_A G6PD, glucose-6-phospha 25.1 26 0.0011 13.4 3.7 75 176-259 341-425 (489) 75 3fh3_A Putative ECF-type sigma 24.2 26 0.0011 13.4 1.5 25 243-267 20-44 (158) 76 2oa4_A SIR5; structure, struct 22.5 29 0.0012 13.0 2.5 31 239-269 61-95 (101) 77 2pzz_A UPF0201 protein MJ1564; 21.8 18 0.00077 14.5 0.3 59 205-264 77-138 (147) 78 2h3o_A MERF; membrane protein, 21.4 31 0.0013 12.9 1.6 15 65-79 44-58 (61) 79 1dly_A Hemoglobin; oxygen stor 20.7 26 0.0011 13.4 1.0 38 228-268 109-148 (164) No 1 >1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Probab=100.00 E-value=0 Score=665.20 Aligned_cols=306 Identities=43% Similarity=0.802 Sum_probs=291.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 35668899999999998741364326898989999999999999999999999999999998853046777777875345 Q gi|254780474|r 11 SVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCH 90 (332) Q Consensus 11 ~~~k~l~~~~l~~~~~lLsGC~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~h 90 (332) +..|.++++++++++++|+||+.++|+|+|++|+++++|+++++++|++|+++|+++++||+||||+++++++|.|+++| T Consensus 5 ~~~r~l~~l~ll~~~~lLsGC~~~~l~P~G~~a~~~~~L~~~~~~l~l~V~v~v~~~~~~~~~ryR~~~~~~~~~p~~~~ 84 (315) T 1fft_B 5 KYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSH 84 (315) T ss_dssp ----------------------CCCSSCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCC T ss_conf 36789999999999999965765445999978999999999999997767767666430034678843677777986355 Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEE Q ss_conf 66125530227899999999999988775134442000012446788888668999998436999962678774306896 Q gi|254780474|r 91 STLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVV 170 (332) Q Consensus 91 s~~lEi~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~l 170 (332) |+++|++||++|++|+++|++++|++++.+|+++|. +.+++|++|+|+|+||+|+|+||++|++|+|||++ T Consensus 85 ~~~lE~i~~~ip~iivi~l~~~~~~~~~~~~~~~~~---------~~~~~~l~I~V~g~qW~W~f~Yp~~~~~t~neL~i 155 (315) T 1fft_B 85 SNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAF 155 (315) T ss_dssp CSHHHHHTTHHHHHHHHHHHHHHHHHSCTTCCSCCC---------CCCSCCCEEEEECCTTSCEEECTTTCCEEESBCCC T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCC T ss_conf 745521567766899899999998888865124666---------67899849999866889999735666566765025 Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHH Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708-89999999 Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWI 249 (332) Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv 249 (332) |+|+||+|+|||+|||||||||+||+|+|+||||+|++||+|+++|+|+|+||||||.|||.|+|+|+|++ ++||++|+ T Consensus 156 P~~~pV~~~ltS~DViHsF~VP~l~~k~daiPG~~~~~~~~a~~~G~y~g~Cae~CG~gHs~M~~~v~vv~~~~~f~~Wv 235 (315) T 1fft_B 156 PANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWV 235 (315) T ss_dssp CSSSEEEEEECBSSSCEEEEEGGGTEEEEECBTSCEEEEEECCSCBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHH T ss_pred CCCCEEEEEEECCCCCCEEEECCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCCEEEEEEECCHHHHHHHH T ss_conf 65530189997487112011320085663289861899996189548999805550711335653899987889999999 Q ss_pred HHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHH Q ss_conf 9986072456-989999976102126321720478354268731524448856602102466688523440110011 Q gi|254780474|r 250 SKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLI 325 (332) Q Consensus 250 ~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~ 325 (332) +++|+++.++ +.++|++|++|++.++++|||+++|+||+.|+++|+++|+.+...++..++.+++||+++|+...+ T Consensus 236 ~~~k~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~p~Lf~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~g~dm~~~~ 312 (315) T 1fft_B 236 AKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAE 312 (315) T ss_dssp HHHHHCSCCBCCHHHHHHHTSSCSSCCSEEESCBCTTHHHHHHHHTTC----------------------------- T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 98661875566899999986775668853004779732889999873178877877644453447899987777654 No 2 >3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* Probab=100.00 E-value=0 Score=469.96 Aligned_cols=208 Identities=20% Similarity=0.371 Sum_probs=190.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHH Q ss_conf 26898989999999999999999999999999999998853046777777875345661255302278999999999999 Q gi|254780474|r 35 VMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITW 114 (332) Q Consensus 35 ~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~t~ 114 (332) ..+|++++|+++..|+.+.++++++|+++|.++++|+++|||++++ ..+++++||+++|++||++|++|+++++++++ T Consensus 49 f~~~asp~a~~i~~L~~~~l~i~~~I~v~V~~~l~~~~~rfr~~~~--~~~~~~~~~~~lE~~wtiip~iil~~l~~~~~ 126 (298) T 3hb3_B 49 FQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRAN--PVPARFTHNTPIEVIWTLVPVLILVAIGAFSL 126 (298) T ss_dssp CSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTS--SSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9898998999999999999999999999999999999999836588--87532367751015788999999999999987 Q ss_pred HHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCC------------------------CCCCCEEEEE Q ss_conf 8877513444200001244678888866899999843699996267------------------------8774306896 Q gi|254780474|r 115 DATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQ------------------------QVAIINELVV 170 (332) Q Consensus 115 ~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~------------------------giatvneL~l 170 (332) ...+.++. .+++++++|+|+|+||+|.|+||++ ++.++||||+ T Consensus 127 ~~~~~~~~-------------~~~~~~l~V~V~g~QW~W~f~Yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~L~l 193 (298) T 3hb3_B 127 PILFRSQE-------------MPNDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVV 193 (298) T ss_dssp HHHHHHHS-------------CCSSCSEEEEEEEETTEEEEEETTTTEEEEECBCCGGGHHHHTCCGGGTTTCBSSCEEE T ss_pred HHHHHHCC-------------CCCCCCEEEEEEEECCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEE T ss_conf 65543114-------------68898789998761322311011022445422354133023577776454455773998 Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999 Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332) Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332) |+|+||+|++||+|||||||||+||+|+||||||.|++||+++|+|+|+|+||||||.|||.|+|+|+|+|++||++|++ T Consensus 194 P~~~~V~~~ltS~DVIHSF~VP~~~~K~DaiPG~~~~~~f~~~~~G~y~g~CsElCG~~Hs~M~~~V~Vvs~~~f~~Wl~ 273 (298) T 3hb3_B 194 PVGKKVLVQVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLA 273 (298) T ss_dssp ESSSEEEEEEEESSSCEEEEEGGGTEEEEECTTCCEEEEEECSSSEEEEECCCSCCSTTTTSCCEEEEEECHHHHHHHHH T ss_pred ECCCEEEEEEEECCCHHHHCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHCHHHCCCCEEEEEECHHHHHHHHH T ss_conf 42756899998675114431510010688538871799998089778999867652854659916999978999999999 Q ss_pred HHHCCCC Q ss_conf 9860724 Q gi|254780474|r 251 KVKRQGT 257 (332) Q Consensus 251 ~~ka~~~ 257 (332) ++|+... T Consensus 274 ~~~~~~~ 280 (298) T 3hb3_B 274 GAKEEFA 280 (298) T ss_dssp HHHHHTB T ss_pred HHHHHHC T ss_conf 8666513 No 3 >1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A Probab=100.00 E-value=0 Score=464.33 Aligned_cols=200 Identities=38% Similarity=0.724 Sum_probs=190.3 Q ss_pred HHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCC Q ss_conf 77513444200001244678888866899999843699996267877430689636982899998358101102201074 Q gi|254780474|r 117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG 196 (332) Q Consensus 117 ~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~ 196 (332) ||+||||+|+ +++++|++|+|+|+||+|+|+||++|++|+|||+||+|+||+|+|||+|||||||||+|++ T Consensus 1 th~ldp~~p~---------~~~~~~~~I~V~a~qW~W~f~Yp~~~i~t~n~l~lP~~~pV~f~ltS~DViHsf~IP~l~~ 71 (205) T 1cyx_A 1 THALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGS 71 (205) T ss_dssp -----------------------CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTE T ss_pred CCCCCCCCCC---------CCCCCCEEEEEEEEECEEEEEECCCCCCEEEEEEEECCCEEEEEEEECCCCEEEEECCCCC T ss_conf 9767888998---------8899988999999922089896899961341699838998999998187412578525243 Q ss_pred EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCC Q ss_conf 03116985148999942774896661332657611365899970-8899999999986072456-989999976102126 Q gi|254780474|r 197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK-SEKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERD 274 (332) Q Consensus 197 k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~-s~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~ 274 (332) |+|+||||+|++||+|+++|+|+|+|+||||.|||.|+|+++|+ ++++|++|++++|+++.++ +.++|++|++|++.+ T Consensus 72 k~da~PG~~~~~~~~a~~~G~y~g~Cae~CG~gHs~M~~~v~vv~~~~~f~~W~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (205) T 1cyx_A 72 QIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYN 151 (205) T ss_dssp EEEECTTCCEEEEECCSSSEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSC T ss_pred CCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC T ss_conf 11248995799999726860189984442470125784699998999999999999764855456388999987564668 Q ss_pred CCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHH Q ss_conf 321720478354268731524448856602102466688523440110011 Q gi|254780474|r 275 SVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLI 325 (332) Q Consensus 275 ~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~ 325 (332) +++|||+++|+||+.|+++|++.|+.+....+..++.++.||+++|+.... T Consensus 152 ~~~~~s~~~~~lf~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~g~d~~~~~ 202 (205) T 1cyx_A 152 QVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAE 202 (205) T ss_dssp CCEEESCBCTTHHHHHHTTTC------------------------------ T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 825874248412778999864327665676644453300388786755444 No 4 >2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 1m56_B* 1m57_B* Probab=100.00 E-value=0 Score=439.63 Aligned_cols=205 Identities=19% Similarity=0.365 Sum_probs=187.1 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHH Q ss_conf 43268989899999999999999999999999999999988530467777778753456612553022789999999999 Q gi|254780474|r 33 FIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVI 112 (332) Q Consensus 33 ~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~ 112 (332) ....+|++++|+++..|+.++++++++|++.|.++++|++||||+++++ .+.+..||+++|++||++|++|+++|+++ T Consensus 16 ~~f~~~asp~a~~i~~L~~~~l~i~~~I~v~V~~~l~~~i~r~r~~~~~--~~~~~~~n~~lEi~wtiip~iil~~l~~~ 93 (262) T 2gsm_B 16 TGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNK--VPARFTHNSPLEIAWTIVPIVILVAIGAF 93 (262) T ss_dssp CSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTCC--SCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 2898878989999999999999999999999999999999998521788--87402577515379999999999999989 Q ss_pred HHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCC-------------------------------- Q ss_conf 998877513444200001244678888866899999843699996267-------------------------------- Q gi|254780474|r 113 TWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQ-------------------------------- 160 (332) Q Consensus 113 t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~-------------------------------- 160 (332) ++.....++. ..+++++|+|+|+||+|.|+||++ T Consensus 94 ~~~~~~~~~~--------------~~~~~~~i~V~g~QW~W~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (262) T 2gsm_B 94 SLPVLFNQQE--------------IPEADVTVKVTGYQWYWGYEYPDEEISFESYMIGSPATGGDNRMSPEVEQQLIEAG 159 (262) T ss_dssp HHHHHHHHHS--------------CCCCSEEEEEEEETTEEEEEETTTTEEEEECBTTSGGGTCCSSCCHHHHHHHHHTT T ss_pred HHHHHHHHCC--------------CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC T ss_conf 9999988302--------------78996789988865101042788654311223477553554446731566641035 Q ss_pred ------CCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCE Q ss_conf ------87743068963698289999835810110220107403116985148999942774896661332657611365 Q gi|254780474|r 161 ------QVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMR 234 (332) Q Consensus 161 ------giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~ 234 (332) ++.|+|||++|+|+||+|+|||+|||||||||+||+|+||||||.|++||+++|+|+|+|+||||||.|||.|+ T Consensus 160 ~~~~~~~l~t~n~L~lP~~~~V~l~ltS~DVIHSF~VP~l~~K~DavPG~~~~~~f~~~~~G~y~g~CaElCG~~Hs~M~ 239 (262) T 2gsm_B 160 YSRDEFLLATDTAMVVPVNKTVVVQVTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMP 239 (262) T ss_dssp CCGGGTTTCBSSCEEEETTSEEEEEEEESSSCEEEEEGGGTEEEEECBTCCEEEEEECCSCEEEEECCCSCCSTTGGGCC T ss_pred CCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCEEECCCCCEEEEECCEEEEEEEEECCCEEEEEECHHHCCHHHCCCC T ss_conf 55654351557717973698887887438621003305688267400882699999918975599988655074246991 Q ss_pred EEEEECCHHHHHHHHHHHH Q ss_conf 8999708899999999986 Q gi|254780474|r 235 FKFYGKSEKGFEDWISKVK 253 (332) Q Consensus 235 f~v~v~s~~~f~~Wv~~~k 253 (332) ++|+|++++||++|++|-. T Consensus 240 ~~V~V~~~~~f~~Wv~e~~ 258 (262) T 2gsm_B 240 ITVKVVSEEAYAAWLEQHH 258 (262) T ss_dssp EEEEEECHHHHHHHHHHHC T ss_pred EEEEEECHHHHHHHHHHHC T ss_conf 6999988999999996354 No 5 >1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* 3ag2_B* 3ag3_B* ... Probab=100.00 E-value=0 Score=422.26 Aligned_cols=200 Identities=19% Similarity=0.317 Sum_probs=170.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999 Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332) Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332) .+..-+|++|++++..+++...+.++.+|.+.|..++.++ +.++. ......||++||++||++|++|++++++ T Consensus 6 ql~fqd~aSp~m~~i~~fh~~~m~i~~~I~~iV~~il~~~----~~~k~---~~~~~~~~~~LEi~WTiiP~iIli~l~i 78 (227) T 1v54_B 6 QLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLM----LTTKL---THTSTMDAQEVETIWTILPAIILILIAL 78 (227) T ss_dssp CCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCSC---CCCSCCCCTTHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCC---CCCCCCCCCEEEEEHHHHHHHHHHHHHH T ss_conf 2699885898999999999999999999999999999999----86077---7553457724786433679999999999 Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896 Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332) Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332) ++++.++.+++ .++++++|+|+|+||+|.|+||+.+ +.|+|||++ T Consensus 79 ~s~~~~~~~~~--------------~~~~~~~I~v~g~Qw~W~~~Y~~~~~~~~~s~~~~~~~~~~~~~~~~~~~n~l~l 144 (227) T 1v54_B 79 PSLRILYMMDE--------------INNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVL 144 (227) T ss_dssp HHHHHHHHHHC--------------CCCCSEEEEEEEETTEEEEEECSSSCEEEEECBCCGGGCCTTCCTTTCBSSCEEE T ss_pred HHHHHHHHHCC--------------CCCCCEEEEEHHHHHHHHEEECCCCCCCEECCCCCHHHHCCCCCCEECCCCEEEE T ss_conf 99999983045--------------8999777883025520440312678862004667524426587750136670796 Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999 Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332) Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332) |+|+||+|++||+|||||||||+||+|+||||||.|++|++++++|+|+|+||||||.|||.|+++|+|+++|||++|++ T Consensus 145 P~~~~V~~~~tS~DViHsf~vP~l~~k~DavPG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~~~~f~~W~a 224 (227) T 1v54_B 145 PMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSA 224 (227) T ss_dssp ETTSCEEEEEEESSSCEEEEEGGGTEEEEECTTCCEEEEECCSSCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHH T ss_pred ECCCEEEEEEEECCCCHHHHCCHHCCEECCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHH T ss_conf 25758999998486421012032146202548761568998389667999887762832348917999988999999999 Q ss_pred HH Q ss_conf 98 Q gi|254780474|r 251 KV 252 (332) Q Consensus 251 ~~ 252 (332) ++ T Consensus 225 ~~ 226 (227) T 1v54_B 225 SM 226 (227) T ss_dssp HT T ss_pred HH T ss_conf 55 No 6 >1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: b.6.1.2 f.17.2.1 PDB: 1ehk_B* 2qpd_B* 2qpe_B* 3bvd_B* 3eh5_B* 3eh3_B* 3eh4_B* Probab=100.00 E-value=2.8e-34 Score=261.97 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=106.1 Q ss_pred CCEEEEEEEHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHCCC----------------CCCCCCCCCCEEEEEEEEEEEE Q ss_conf 6612553022789999-9999999988775134442000012----------------4467888886689999984369 Q gi|254780474|r 91 STLLELFVWLVPLVIV-GFLAVITWDATHRMDPYAPLERISE----------------SKSIAKNSKPLVVEVVALDWKW 153 (332) Q Consensus 91 s~~lEi~wt~iP~iIi-~~L~~~t~~~~~~ldp~~p~~~~~~----------------~~~~~~~~~~l~I~V~a~qW~W 153 (332) +.++|++|+++|++++ +++++++|......+...|...... ...........+|.++++||.| T Consensus 11 ~~~~E~~W~~vp~~ilvvfl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (168) T 1xme_B 11 ILAYEKGWLAFSLAMLFVFIALIAYTLATHTAGVIPAGKLERVDPTTVRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGY 90 (168) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGGSCCCSCCBCCTTSTTTSSTTTCGGGSEEECSSSEEEEEEEEETTEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCC T ss_conf 30456889999999998999999999999713568943256012689863450135577743568985999999850456 Q ss_pred EEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC Q ss_conf 99962678774306896369828999983581011022010740311698514899994277489666133265761136 Q gi|254780474|r 154 LFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233 (332) Q Consensus 154 ~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M 233 (332) +.|+|++|+|+||+|.+||+|||||||||+|++|+|++||+.|++||+|+++|+|+|+|+||||.||+.| T Consensus 91 ----------~~~~l~vp~g~~V~~~lts~DViHsf~ip~~~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H~~M 160 (168) T 1xme_B 91 ----------QPNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNM 160 (168) T ss_dssp ----------ESSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEEECCSCEEEEEECCSCCSTTGGGC T ss_pred ----------CCCEEEEECCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEECHHHCCCCCCCC T ss_conf ----------7888999599999999992885420676586851135899679999993898899999713148480578 Q ss_pred EEEEEECC Q ss_conf 58999708 Q gi|254780474|r 234 RFKFYGKS 241 (332) Q Consensus 234 ~f~v~v~s 241 (332) +++++|++ T Consensus 161 ~~~v~V~e 168 (168) T 1xme_B 161 FGTIVVKE 168 (168) T ss_dssp EEEEEEEC T ss_pred EEEEEEEC T ss_conf 07999979 No 7 >2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Probab=99.92 E-value=4.5e-25 Score=196.55 Aligned_cols=93 Identities=22% Similarity=0.363 Sum_probs=88.2 Q ss_pred CCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEE Q ss_conf 88668999998436999962678774306896369828999983581011022010740311698514899994277489 Q gi|254780474|r 139 SKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAY 218 (332) Q Consensus 139 ~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y 218 (332) .+..+|.++|+||.|. -|+|++|+|++|+|.+||.||+|+||||++++|+|++||++++++|+++++|+| T Consensus 43 ~~~~ev~v~a~~~~f~----------p~~i~vp~G~~V~~~lts~DV~H~f~Ip~~~v~~~~~PG~~~~~~ft~~~~G~y 112 (135) T 2cua_A 43 PNQYTVYVLAFAFGYQ----------PNPIEVPQGAEIVFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEY 112 (135) T ss_dssp TTEEEEEEEEETTEEE----------SSSEEEETTSEEEEEEEBSSSCEEEEETTSSCEEEECBTBCEEEEEECCSCEEE T ss_pred CCEEEEEEEEEECCCC----------CCEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCEEE T ss_conf 9969999999966326----------888999599999999996984544513787801544799628999991998999 Q ss_pred EEECCCCCCCCCCCCEEEEEECC Q ss_conf 66613326576113658999708 Q gi|254780474|r 219 SGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 219 ~G~cae~cG~ghs~M~f~v~v~s 241 (332) .++|+||||.||+.|+++++|++ T Consensus 113 ~~~C~e~CG~gH~~M~g~v~V~e 135 (135) T 2cua_A 113 RIICNQYCGLGHQNMFGTIVVKE 135 (135) T ss_dssp EEECCSCCSTTSTTCEEEEEEEC T ss_pred EEECHHHCCCCCCCCEEEEEEEC T ss_conf 99982423848047807999979 No 8 >1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Probab=99.34 E-value=1.7e-11 Score=100.08 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=70.1 Q ss_pred EEEEEECCCEEEEEEEECC-CCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf 0689636982899998358-101102201074031169851489999427748966613326576113658999708 Q gi|254780474|r 166 NELVVPIDRPLEFRITASS-VMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~D-ViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) +.|.++.|.+|+|++++.| +.|+|.||.++.+.+..||....++|+|+++|+|...|+++|+.+| |...++|++ T Consensus 38 ~~i~v~~G~~V~l~~~N~~~~~H~~~i~~~~~~~~~~pG~t~~~~ft~~~~Gty~y~C~~~~~~~~--M~G~i~V~e 112 (112) T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKTISFTADKAGAFTIWCQLHPKNIH--LPGTLNVVE 112 (112) T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEEEGGGTEEEEECTTCEEEEEEECCSCEEEEEBCSSSCTTTB--CCEEEEEEC T ss_pred CEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCCHHCC--CEEEEEEEC T ss_conf 989992999999999959987267770587704610798468899980368789998930670116--969999979 No 9 >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Probab=98.92 E-value=5.5e-09 Score=82.19 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=74.8 Q ss_pred CCEEEEEECCCEEEEEEE----ECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEE Q ss_conf 430689636982899998----3581011022010740311698514899994277489666133265761136589997 Q gi|254780474|r 164 IINELVVPIDRPLEFRIT----ASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG 239 (332) Q Consensus 164 tvneL~lPv~~pV~f~lt----S~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v 239 (332) +..++.+-.|-.|.+.+| ..|+.|.|.||.-+..+..+||.+..+.|+||+||+|.-.|++||-+-|-.|+..+.| T Consensus 511 ~~~~~~Vk~GDeVt~~~TN~d~~~D~tHGF~i~~~~i~~~v~P~~T~svtF~adkpGV~~~YCt~FC~ALH~EM~g~~~V 590 (595) T 1fwx_A 511 SIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLV 590 (595) T ss_dssp SCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTCEEEEEE T ss_pred CCCEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCEEECCCCEEEEEEECCCCCEECHHHHHHCHHHHHHHCEEEEE T ss_conf 79857988999899999257767457754676588766698999826899988999242124002232878854035998 Q ss_pred CCHH Q ss_conf 0889 Q gi|254780474|r 240 KSEK 243 (332) Q Consensus 240 ~s~~ 243 (332) .+.. T Consensus 591 ~p~~ 594 (595) T 1fwx_A 591 EPKE 594 (595) T ss_dssp ECC- T ss_pred EECC T ss_conf 5488 No 10 >1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} SCOP: b.6.1.4 b.69.3.1 Probab=98.65 E-value=1.9e-07 Score=71.22 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=72.6 Q ss_pred CCEEEEEECCCEEEEEEEE----CCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEE Q ss_conf 4306896369828999983----581011022010740311698514899994277489666133265761136589997 Q gi|254780474|r 164 IINELVVPIDRPLEFRITA----SSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG 239 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS----~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v 239 (332) +.+++.+-.|-.|.|.+|- .|+.|.|-|+.-+..+-.+||.+..+.|+||+||+|.-.|++||-+=|-.|+..+.| T Consensus 499 ~~~~~~v~~GD~Vt~~~TN~d~~~D~tHGf~i~~~~i~~~v~P~~T~svtf~adkpGv~~~YCt~FC~alH~EM~g~~~V 578 (581) T 1qni_A 499 GMTDFKVKEGDEVTVYITNLDMVEDVTHGFCMVNHGVSMEISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEMVGRMLV 578 (581) T ss_dssp SCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEEEEECTTCEEEEEEECCSSEEEEEECCSCCSTTGGGCEEEEEE T ss_pred CCCEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEE T ss_conf 78747988999999999357766357761465588786698999716899989999541066313426887754256998 Q ss_pred CC Q ss_conf 08 Q gi|254780474|r 240 KS 241 (332) Q Consensus 240 ~s 241 (332) .. T Consensus 579 ~~ 580 (581) T 1qni_A 579 EA 580 (581) T ss_dssp EC T ss_pred EC T ss_conf 41 No 11 >1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Probab=97.19 E-value=0.0021 Score=42.56 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=64.3 Q ss_pred CEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCC---HHCCCHHH----------------------- Q ss_conf 6689999984369999626787743068963698289999835810---11022010----------------------- Q gi|254780474|r 141 PLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVM---NSFYIPGL----------------------- 194 (332) Q Consensus 141 ~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DVi---HSF~IP~l----------------------- 194 (332) .-+|+|..-+= .+.| .-++|.++.|+.|+|.++..|-+ |.+=+... T Consensus 16 ~~tv~v~~~~~--~m~f------~p~~i~V~~G~~V~~~~~N~~~~~~~hni~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140) T 1qhq_A 16 AQTVEVRAAPD--ALAF------AQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPP 87 (140) T ss_dssp SEEEEEEBCSS--SSSB------SCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCC T ss_pred CEEEEEEECCC--CCEE------CCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 86999985188--4126------178799889999999998788774506886256641567888876653221124568 Q ss_pred -------CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf -------74031169851489999427748966613326576113658999708 Q gi|254780474|r 195 -------AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 195 -------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) ..-...-||...++.|+++++|.|.-.|+ +.|-..+.|..+++|.+ T Consensus 88 ~~~~~~~~~t~~v~pges~ti~f~~~~pG~y~~~Ct-~pgH~~aGM~G~i~V~P 140 (140) T 1qhq_A 88 PDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICT-FPGHYLAGMKGTLTVTP 140 (140) T ss_dssp TTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECC-STTTTTTTCEEEEEEEC T ss_pred CCCCCHHCCCCCCCCCCEEEEEECCCCCCEEEEECC-CCCHHHCCCEEEEEECC T ss_conf 984100024411179826999981689803999879-82530344767999889 No 12 >2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Probab=97.13 E-value=0.0016 Score=43.40 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=61.1 Q ss_pred CCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC-CC-HHCCCHH-------------------H-- Q ss_conf 88866899999843699996267877430689636982899998358-10-1102201-------------------0-- Q gi|254780474|r 138 NSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASS-VM-NSFYIPG-------------------L-- 194 (332) Q Consensus 138 ~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~D-Vi-HSF~IP~-------------------l-- 194 (332) ..++.+|+|....=. +. -..++|.+++|++|+|.++..| ++ |.+-+-. . T Consensus 15 ~~~~~tv~i~~~~~~--m~------F~p~~i~V~aG~~V~~~~~N~g~~~~Hn~v~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (139) T 2aan_A 15 GSGPVTIEIGSKGEE--LA------FDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANY 86 (139) T ss_dssp --CCEEEEEEBCTTS--SS------BSCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTT T ss_pred CCCCEEEEEEECCCC--EE------EECCEEEECCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCC T ss_conf 777789999616871--07------8158799869998999999489753018775066531356777765430310146 Q ss_pred ---------CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEE Q ss_conf ---------740311698514899994277489666133265761136589997 Q gi|254780474|r 195 ---------AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG 239 (332) Q Consensus 195 ---------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v 239 (332) ..-...-||....+.|+++++|+|.-.|+ +-|.. +.|..+++| T Consensus 87 ~~~~~~~~~~~~~~~~pg~s~~~~~~~~~~G~Y~f~Ct-iPGH~-~gM~G~i~V 138 (139) T 2aan_A 87 LPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICT-VPGHY-PLMQGKLVV 138 (139) T ss_dssp CCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECC-STTTT-TTSEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC-CCCCC-CCCEEEEEE T ss_conf 66555421011322368863799994699847999979-99921-176799997 No 13 >3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Probab=96.89 E-value=0.011 Score=37.35 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=48.6 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCCHHHCCE----ECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 306896369828999983581011022010740----3116985148999942774896661332657611365899970 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYIPGLAGQ----IYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k----~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) -.+|.+++|..|.|. -.++.-|++..-..... -..+++......++.+++|+|.-+|.- |..|+.+++|. T Consensus 59 P~~i~V~~GdtV~f~-N~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~y~C~~-----H~~M~G~I~Ve 132 (132) T 3c75_A 59 TPEVTIKAGETVYWV-NGEVMPHNVAFKKGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP-----HPFMRGKVIVE 132 (132) T ss_dssp SSEEEECTTCEEEEE-ECSSSCBCCEECTTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS-----CTTCEEEEEEC T ss_pred CCEEEECCCCEEEEE-ECCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC-----CCCCEEEEEEC T ss_conf 999898899999999-899886440003464664445655657997289977999899998079-----88977999989 No 14 >2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Probab=96.70 E-value=0.02 Score=35.49 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=33.6 Q ss_pred EEEECCCEEEEEEEE-CCCCHHCCCHHHCCEECCCCCC--CEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 896369828999983-5810110220107403116985--148999942774896661332657611365899970 Q gi|254780474|r 168 LVVPIDRPLEFRITA-SSVMNSFYIPGLAGQIYAMAGM--ETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 168 L~lPv~~pV~f~ltS-~DViHSF~IP~l~~k~daiPG~--~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) |.++.|..|+|+|.. .+..|.|=++.....-...||. .+.+.++++++|+|.+.|+-- |-.-+.|.+.+.+. T Consensus 57 i~v~~G~~v~l~l~N~~~~~H~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~G~~~~~C~v~-gH~~~GM~~~v~v~ 131 (447) T 2dv6_A 57 LVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIA-GHRQAGMEGNIQVL 131 (447) T ss_dssp EEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBCSTTBEEEEEEECCSCEEEEEECCST-THHHHTCEEEEEEE T ss_pred EEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCC-CHHHCCCCCEEECC T ss_conf 7966899899999869984166880798765424478883477898638873579998547-67668991168427 No 15 >3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... Probab=96.58 E-value=0.0036 Score=40.82 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=52.3 Q ss_pred CCEEEEEE-CCCEEEEEEEECCCC------HHCCCHH------------------------HCC----EECCCCCCCEEE Q ss_conf 43068963-698289999835810------1102201------------------------074----031169851489 Q gi|254780474|r 164 IINELVVP-IDRPLEFRITASSVM------NSFYIPG------------------------LAG----QIYAMAGMETKL 208 (332) Q Consensus 164 tvneL~lP-v~~pV~f~ltS~DVi------HSF~IP~------------------------l~~----k~daiPG~~t~l 208 (332) ..++|.+| .|++|+|.++-.|.+ |++.+.. -.- -.-.=||....+ T Consensus 16 ~~~~i~V~k~Ge~v~~~~~N~g~~ph~~~~hn~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vi~~t~~l~pges~~i 95 (125) T 3fsa_A 16 NTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSV 95 (125) T ss_dssp SCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEE T ss_pred CCCEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEE T ss_conf 27778994599889999996997862189731132255107799999976350124679886441120200078860699 Q ss_pred EEEEC-CCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 99942-774896661332657611365899970 Q gi|254780474|r 209 HAVMN-KKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 209 ~~~a~-~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) .|++. ++|.|.-.| +| .||+.|+.+++|. T Consensus 96 tf~~p~~~g~~~y~c--~c-pgHa~M~G~l~Ve 125 (125) T 3fsa_A 96 TFDVSKLKEGEQYMF--FC-AAHAAMKGTLTLK 125 (125) T ss_dssp EEEGGGC---CCEEE--EC-SSSTTCEEEEEEC T ss_pred EEECCCCCCCEEEEE--EC-CCCCCCEEEEEEC T ss_conf 998146789885999--79-9876707999989 No 16 >2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper protein, copper, electron transport, metal- binding, periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Probab=96.12 E-value=0.041 Score=33.31 Aligned_cols=74 Identities=15% Similarity=0.029 Sum_probs=54.5 Q ss_pred EEEEEECCCEEEEEEEECC--CCHHCCCHHHCCEEC-----------------CCCCCCEEEEE-EECCCEEEEEECCCC Q ss_conf 0689636982899998358--101102201074031-----------------16985148999-942774896661332 Q gi|254780474|r 166 NELVVPIDRPLEFRITASS--VMNSFYIPGLAGQIY-----------------AMAGMETKLHA-VMNKKGAYSGFSANY 225 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~D--ViHSF~IP~l~~k~d-----------------aiPG~~t~l~~-~a~~~G~y~G~cae~ 225 (332) ..|.++.|..|++.++-.| +-|+|-|-..+.+.- ..||-.....+ .++++|+|.-.|.-. T Consensus 61 Ptl~v~~Gd~V~v~l~N~d~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~pGty~YhCh~~ 140 (154) T 2cal_A 61 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIP 140 (154) T ss_dssp CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCST T ss_pred CEEEEECCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCC T ss_conf 85999699999999976887676520787489764223567875554542443489960899998289997899979986 Q ss_pred CCCCCCCCEEEEEEC Q ss_conf 657611365899970 Q gi|254780474|r 226 SGRGFSHMRFKFYGK 240 (332) Q Consensus 226 cG~ghs~M~f~v~v~ 240 (332) + -.-+.|...++|. T Consensus 141 ~-H~~~GM~G~iiVe 154 (154) T 2cal_A 141 G-MAATGMFGKIVVK 154 (154) T ss_dssp T-TGGGTCEEEEEEC T ss_pred C-HHHCCCEEEEEEC T ss_conf 8-7677687989989 No 17 >2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} Probab=96.12 E-value=0.0001 Score=51.85 Aligned_cols=145 Identities=9% Similarity=0.006 Sum_probs=90.3 Q ss_pred EEEEEECCCEEEEEEEE--CCCCHHCCCHH---------------HCC-EECCCCCCCEEEEEEECCCEEEEEECCCCCC Q ss_conf 06896369828999983--58101102201---------------074-0311698514899994277489666133265 Q gi|254780474|r 166 NELVVPIDRPLEFRITA--SSVMNSFYIPG---------------LAG-QIYAMAGMETKLHAVMNKKGAYSGFSANYSG 227 (332) Q Consensus 166 neL~lPv~~pV~f~ltS--~DViHSF~IP~---------------l~~-k~daiPG~~t~l~~~a~~~G~y~G~cae~cG 227 (332) +.|.+..|+.|+|++-. .+..|+|.+.. ... ....-||-...+.|++++||.|...|-.++. T Consensus 204 ~~l~v~~Ge~vRlRliNag~~~~~~~hl~Gh~f~vV~~DG~~~~~~~~dt~~i~pG~r~~v~~~a~~PG~y~~h~H~~~~ 283 (442) T 2zoo_A 204 NSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHSIFR 283 (442) T ss_dssp GCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGGGSSCEECSBSEEEECTTEEEEEEEECCSCEEEEEEESSTHH T ss_pred CCEEECCCCEEEEEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCHHH T ss_conf 43697889899999981678875115867951899974890578887269999987569999996998578997781688 Q ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCC------------CCCCCH---HHHHHHHHHHHCCCCEEECCCC-------CC Q ss_conf 7611365899970889999999998607------------245698---9999976102126321720478-------35 Q gi|254780474|r 228 RGFSHMRFKFYGKSEKGFEDWISKVKRQ------------GTFLNR---QEYLLLKKPSERDSVRYFSPIE-------KG 285 (332) Q Consensus 228 ~ghs~M~f~v~v~s~~~f~~Wv~~~ka~------------~~~l~~---~~y~~l~~ps~~~~~~~f~~~~-------~~ 285 (332) .-...|...+.|..+++++-|..++... ++++++ ..-.+..+.++....++|++|+ |+ T Consensus 284 ~~~~G~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~y~~~Ca~CH~~~G~G~~~ 363 (442) T 2zoo_A 284 AFNKGALAMLKVEGPDDHSIFTGKTAENVYLPEGSAIQSLDNTFTKITANNKDEQIRFGQRVYEANCMACHQANGEGIPG 363 (442) T ss_dssp HHTTSCEEEEEEESCCCTTTCCCCCCSCSSCCCCSCCCCCCCCCCCCCCCSHHHHHHHHHHHHHHHTHHHHCTTSCCBTT T ss_pred HHHCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 98578758999617878034425503444300000234667654534569867876543455533246525889830888 Q ss_pred HHHHHHCCCCCCCCCCCCHHHCCCC Q ss_conf 4268731524448856602102466 Q gi|254780474|r 286 LYYSILNLCVHPGKICMDEMMRIDA 310 (332) Q Consensus 286 lf~~i~~~~~~~~~~~~~~~m~~~~ 310 (332) .|+.+.+.-.-.+.........+++ T Consensus 364 ~~P~L~~~~~~~~~~~~~i~~~l~G 388 (442) T 2zoo_A 364 AFPPLAKSDYLNNNPLLGVNAIIKG 388 (442) T ss_dssp TBCCCTTCHHHHHCHHHHHHHHHHC T ss_pred CCCCCCCCCCCCCCHHHHHHEECCC T ss_conf 7888899953048876654501026 No 18 >2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Probab=95.57 E-value=0.089 Score=30.93 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=54.2 Q ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHH-------HCCEECCCCCCCEEEE Q ss_conf 888866899999843699996267877430689636982899998358101102201-------0740311698514899 Q gi|254780474|r 137 KNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPG-------LAGQIYAMAGMETKLH 209 (332) Q Consensus 137 ~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~-------l~~k~daiPG~~t~l~ 209 (332) .....+.|++..+.| +-.+|.+++|..|.|. -.+.+-|++..-. +.++. ..||. ... T Consensus 16 ~~~~~~~v~~~~~~F------------~P~~i~i~~GdtV~f~-N~d~~~Hnv~~~~~~~~~~~~~~~~-~~~g~--~~~ 79 (105) T 2ov0_A 16 VADGAIVVDIAKMKY------------ETPELHVKVGDTVTWI-NREAMPHNVHFVAGVLGEAALKGPM-MKKEQ--AYS 79 (105) T ss_dssp CCTTCEEEEEETTEE------------SSSEEEECTTCEEEEE-ECSSSCBCCEECTTTSSSSCEECCC-BCTTE--EEE T ss_pred CCCCCEEEEEECCEE------------ECCEEEECCCCEEEEE-ECCCCCEEEEECCCCCCCCCCCCCC-CCCCC--EEE T ss_conf 665326997103788------------3999998899999998-8998864278726746644334332-16996--479 Q ss_pred EEECCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 9942774896661332657611365899970 Q gi|254780474|r 210 AVMNKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 210 ~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) ++.+++|+|.-+|.- |+.|...++|. T Consensus 80 ~tF~~~G~y~y~C~~-----H~~M~G~I~Ve 105 (105) T 2ov0_A 80 LTFTEAGTYDYHCTP-----HPFMRGKVVVE 105 (105) T ss_dssp EEECSCEEEEEECSS-----CTTCEEEEEEC T ss_pred EEECCCEEEEEEECC-----CCCCEEEEEEC T ss_conf 995388389999479-----88987999989 No 19 >1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Probab=95.42 E-value=0.068 Score=31.77 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=57.7 Q ss_pred CCEEEEEECC-CEEEEEEEECCC------CHHCCCHHHCC--------------E--------------ECCCCCCCEEE Q ss_conf 4306896369-828999983581------01102201074--------------0--------------31169851489 Q gi|254780474|r 164 IINELVVPID-RPLEFRITASSV------MNSFYIPGLAG--------------Q--------------IYAMAGMETKL 208 (332) Q Consensus 164 tvneL~lPv~-~pV~f~ltS~DV------iHSF~IP~l~~--------------k--------------~daiPG~~t~l 208 (332) ...+|.+..| ++|+|.++-.|- .|.|=|+.-+. . .-.-||..+++ T Consensus 16 ~~~~i~V~~G~~~v~~~~~N~g~~ph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~via~t~~l~pGes~~i 95 (129) T 1cuo_A 16 STRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSV 95 (129) T ss_dssp SCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEE T ss_pred CCCEEEEECCCEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCEEEE T ss_conf 06689993898799999991897870368860143473008999999876320125789986002202431279832589 Q ss_pred EEEE---CCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 9994---2774896661332657611365899970 Q gi|254780474|r 209 HAVM---NKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 209 ~~~a---~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) .|++ +++|+|.-.|+ |=|.+ +.|+.+++|. T Consensus 96 ~f~~p~~~~~G~Y~f~Ct-~PGH~-~~M~G~l~V~ 128 (129) T 1cuo_A 96 KFKVSALSKDEAYTYFCS-YPGHF-SMMRGTLKLE 128 (129) T ss_dssp EEEGGGCCTTSCEEEECC-STTCT-TTSEEEEEEE T ss_pred EEECCCCCCCCCEEEEEC-CCCCC-CCCEEEEEEE T ss_conf 997446789974899968-99900-0867899982 No 20 >1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Probab=95.18 E-value=0.11 Score=30.26 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=46.7 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCCHHHC-----CEE-CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEE Q ss_conf 3068963698289999835810110220107-----403-1169851489999427748966613326576113658999 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYIPGLA-----GQI-YAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFY 238 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~IP~l~-----~k~-daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~ 238 (332) -.+|.+++|..|.|. -++++-|++..-... ..- ...|| .....+.+++|+|.-.|+- |..|...++ T Consensus 33 P~~i~V~~GdtV~f~-N~d~~~H~v~~~~~~~~~~~f~s~~~~~~--~~~~~tf~~~G~y~y~C~~-----H~~M~G~I~ 104 (106) T 1id2_A 33 TPEVTIKAGETVYWV-NGEVMPHNVAFKKGIVGEDAFRGEMMTKD--QAYAITFNEAGSYDYFCTP-----HPFMRGKVI 104 (106) T ss_dssp SSEEEECTTCEEEEE-ECSSSCBCCEECTTTSSSSCEECCCBCTT--EEEEEEECSCEEEEEECSS-----CTTCEEEEE T ss_pred CCEEEECCCCEEEEE-ECCCCCEEEEECCCCCCCCCCCCCCCCCC--CEEEEECCCCEEEEEECCC-----CCCCEEEEE T ss_conf 999998899999999-89988377885377777553346665899--7599984798589998279-----889779999 Q ss_pred EC Q ss_conf 70 Q gi|254780474|r 239 GK 240 (332) Q Consensus 239 v~ 240 (332) |. T Consensus 105 Ve 106 (106) T 1id2_A 105 VE 106 (106) T ss_dssp EC T ss_pred EC T ss_conf 89 No 21 >2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Probab=94.97 E-value=0.11 Score=30.22 Aligned_cols=75 Identities=11% Similarity=0.103 Sum_probs=56.9 Q ss_pred CCEEEEEE-CCCEEEEEEEECCCC------HHCCCHHHC-------------CE---------------ECCCCCCCEEE Q ss_conf 43068963-698289999835810------110220107-------------40---------------31169851489 Q gi|254780474|r 164 IINELVVP-IDRPLEFRITASSVM------NSFYIPGLA-------------GQ---------------IYAMAGMETKL 208 (332) Q Consensus 164 tvneL~lP-v~~pV~f~ltS~DVi------HSF~IP~l~-------------~k---------------~daiPG~~t~l 208 (332) ..+++.++ .|++|+|.+.-.+.+ |+|=|..-+ .. .-.=||...++ T Consensus 15 ~~~~i~V~k~Ge~v~i~l~N~g~l~~~~m~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~p~~~~~via~t~~l~pge~~~i 94 (128) T 2iaa_C 15 NTKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSV 94 (128) T ss_dssp SCSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEE T ss_pred CCCEEEEECCCCEEEEEEEECCCCCHHEECCCEEECCCCCHHHHHHHHHHCHHCCCCCCCCCHHHHEEEEECCCCCEEEE T ss_conf 16679993799889999997996841000142387577418999999875512037789864112115310178856899 Q ss_pred EEEE---CCCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 9994---2774896661332657611365899970 Q gi|254780474|r 209 HAVM---NKKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 209 ~~~a---~~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) .|++ +++|+|.-.| .|=|-. +.|+.++.|- T Consensus 95 ~f~~p~~~~~G~Y~f~C-t~PGH~-~gM~G~l~V~ 127 (128) T 2iaa_C 95 TFDVSKLKEGEDYAFFC-SFPGHW-SIMKGTIELG 127 (128) T ss_dssp EEESSCCCTTCCEEEEC-CSTTCT-TTSEEEEEEC T ss_pred EEEEECCCCCCCEEEEE-CCCCHH-HCCEEEEEEC T ss_conf 99963457896089997-999923-4837899975 No 22 >1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Probab=94.85 E-value=0.17 Score=28.97 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=55.5 Q ss_pred CCEEEEEEC-CCEEEEEEEECCC------CHHC-----------------------CCHHHCCEE-----CCCCCCCEEE Q ss_conf 430689636-9828999983581------0110-----------------------220107403-----1169851489 Q gi|254780474|r 164 IINELVVPI-DRPLEFRITASSV------MNSF-----------------------YIPGLAGQI-----YAMAGMETKL 208 (332) Q Consensus 164 tvneL~lPv-~~pV~f~ltS~DV------iHSF-----------------------~IP~l~~k~-----daiPG~~t~l 208 (332) ..+++.++. |++|+|.++-.|- .|.+ |+|+-...+ =.-||.++++ T Consensus 16 ~~~~i~V~~~ge~v~~~~~N~g~lp~~~m~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~p~~~~~via~t~~l~pGe~~~i 95 (128) T 1nwp_A 16 NTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSV 95 (128) T ss_dssp SCSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEE T ss_pred CCCEEEEECCCCEEEEEEEECCCCCHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEE T ss_conf 06579995699489999993897863442126324042347999999875233148998887554687302389962699 Q ss_pred EEEEC---CCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 99942---774896661332657611365899970 Q gi|254780474|r 209 HAVMN---KKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 209 ~~~a~---~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) .|++. ++|+|.-.|+ |=|-+ +.|+.+++|. T Consensus 96 ~f~~p~~~~~G~Y~f~Ct-~PGH~-~~M~G~l~Ve 128 (128) T 1nwp_A 96 TFDVSKLAAGEKYGFFCS-FPGHI-SMMKGTVTLK 128 (128) T ss_dssp EEEGGGSCTTSCEEEECC-STTCG-GGSEEEEEEC T ss_pred EEEECCCCCCCCEEEEEC-CCCHH-HCCEEEEEEC T ss_conf 999416789984899978-85957-8075889989 No 23 >2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Probab=94.44 E-value=0.27 Score=27.52 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=55.9 Q ss_pred CCEEEEEE-CCCEEEEEEEECCC------CHHCCCHHHCC------------------------EEC----CCCCCCEEE Q ss_conf 43068963-69828999983581------01102201074------------------------031----169851489 Q gi|254780474|r 164 IINELVVP-IDRPLEFRITASSV------MNSFYIPGLAG------------------------QIY----AMAGMETKL 208 (332) Q Consensus 164 tvneL~lP-v~~pV~f~ltS~DV------iHSF~IP~l~~------------------------k~d----aiPG~~t~l 208 (332) ..+++.++ .|++|+|.++-.+- .|.|=|-.-+. -+- .-||..+++ T Consensus 16 ~~~~i~V~k~Ge~V~i~~~N~g~lp~~~m~HN~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~t~ll~pGes~~i 95 (129) T 2ccw_A 16 NVKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSV 95 (129) T ss_dssp SCSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEE T ss_pred CCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCCCCEEEE T ss_conf 35358990699799999982895851213210587474237999999987330468889997302234202289955899 Q ss_pred EEEEC---CCEEEEEECCCCCCCCCCCCEEEEEEC Q ss_conf 99942---774896661332657611365899970 Q gi|254780474|r 209 HAVMN---KKGAYSGFSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 209 ~~~a~---~~G~y~G~cae~cG~ghs~M~f~v~v~ 240 (332) .|++. ++|+|.-.|+ |=|-+ +.|+.++.|- T Consensus 96 ~f~~p~~~~~G~Y~f~Ct-~PGH~-~~M~G~l~V~ 128 (129) T 2ccw_A 96 TFDVSKIAAGENYAYFCS-FPGHW-AMMKGTLKLG 128 (129) T ss_dssp EEEGGGSCTTCCEEEECC-STTGG-GTSEEEEEEC T ss_pred EEEECCCCCCCCEEEEEC-CCCHH-HCCEEEEEEC T ss_conf 998147789976899978-89947-8757899975 No 24 >1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Probab=93.63 E-value=0.21 Score=28.20 Aligned_cols=97 Identities=13% Similarity=0.008 Sum_probs=61.5 Q ss_pred CEEEEEECCCEEEEEEEECCCCHH-CCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC--CEEEEEECC Q ss_conf 306896369828999983581011-02201074031169851489999427748966613326576113--658999708 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNS-FYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH--MRFKFYGKS 241 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHS-F~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~--M~f~v~v~s 241 (332) -.+|.+.+|..|+|..++..--|. +--+...+-....++......++.+++|+|.-+|. -|.. |...++|-. T Consensus 20 P~~ltI~~GDTV~f~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~Y~C~-----pH~~~GM~G~IiVgd 94 (123) T 1pmy_A 20 PALVRLKPGDSIKFLPTDKGHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA-----PHYMMGMVALVVVGD 94 (123) T ss_dssp SSEEEECTTCEEEEECSSSSCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS-----TTTTTTCEEEEEESS T ss_pred CCEEEECCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEC-----CCCCCCCEEEEEECC T ss_conf 798998599989998899887416415677543332123543102586368759999971-----067788679999999 Q ss_pred H-HHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 8-999999999860724569899999761 Q gi|254780474|r 242 E-KGFEDWISKVKRQGTFLNRQEYLLLKK 269 (332) Q Consensus 242 ~-~~f~~Wv~~~ka~~~~l~~~~y~~l~~ 269 (332) + ..+++ ++. .......+...++|.+ T Consensus 95 ~~~n~~~-~~~--~~~~~~~~~~~~~~~~ 120 (123) T 1pmy_A 95 KRDNLEA-AKS--VQHNKLTQKRLDPLFA 120 (123) T ss_dssp CCTTHHH-HHT--CCCCHHHHHHHHHHHH T ss_pred CCCCHHH-HHH--HCCCHHHHHHHHHHHH T ss_conf 9878899-975--1234256999999998 No 25 >1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Probab=93.55 E-value=0.19 Score=28.57 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=59.4 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHC-CCHH--HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf 3068963698289999835810110-2201--074031169851489999427748966613326576113658999708 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSF-YIPG--LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF-~IP~--l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) -.+|.+.+|..|.|..+... |+- .+.. .-+...-..++.....++.+++|+|.-+|+--|+. .|...++|-+ T Consensus 20 P~~i~I~~GdTV~f~n~~~~--Hnv~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~pH~~~---GMvG~IvVg~ 94 (123) T 1paz_A 20 PAYIKANPGDTVTFIPVDKG--HNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCTPHYAM---GMIALIAVGD 94 (123) T ss_dssp SSEEEECTTCEEEEEESSSS--CCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECTTTGGG---TCEEEEEESS T ss_pred CCEEEECCCCEEEEEECCCC--EEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCC---CCEEEEEECC T ss_conf 78899889998999989997--237741675766532222246863379606880699981568678---9789999999 Q ss_pred -HHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf -8999999999860724569899999761 Q gi|254780474|r 242 -EKGFEDWISKVKRQGTFLNRQEYLLLKK 269 (332) Q Consensus 242 -~~~f~~Wv~~~ka~~~~l~~~~y~~l~~ 269 (332) +..+++ +.++|.+ .+.+..+++|-+ T Consensus 95 ~~~n~~~-~~~~~~~--~~~k~~~~~~~~ 120 (123) T 1paz_A 95 SPANLDQ-IVSAKKP--KIVQERLEKVIA 120 (123) T ss_dssp SCTTHHH-HHHSCCC--HHHHHHHHHHHC T ss_pred CCCCHHH-HHHHHCC--HHHHHHHHHHHH T ss_conf 9989899-8753231--889999999999 No 26 >1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Probab=93.31 E-value=0.38 Score=26.48 Aligned_cols=67 Identities=9% Similarity=0.136 Sum_probs=45.4 Q ss_pred EEEEEECCCEEEEEEEECCCCHHCCCHHHC-----------CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC--CC Q ss_conf 068963698289999835810110220107-----------40311698514899994277489666133265761--13 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVMNSFYIPGLA-----------GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF--SH 232 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DViHSF~IP~l~-----------~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh--s~ 232 (332) .+|.+++|..|.|. .++..-|+.-.-.-+ ...-..||. ...++.+++|+|.-+|.- | +. T Consensus 19 ~~i~i~~GdtV~f~-n~~~~~H~v~~~~~~~~~~~~~~~~~~~~~~~~g~--t~~~tf~~~G~y~Y~C~~-----H~~~g 90 (98) T 1pcs_A 19 STVTIKAGEEVKWV-NNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGE--SFTSTFTEPGTYTYYCEP-----HRGAG 90 (98) T ss_dssp SEEEECTTCEEEEE-ECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTC--EEEEECCSCEEEEEECGG-----GTTTT T ss_pred CEEEECCCCEEEEE-ECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCEEEEEECCC-----CCCCC T ss_conf 99999999989997-88988752477035677776555454554337995--379980788479998476-----88999 Q ss_pred CEEEEEEC Q ss_conf 65899970 Q gi|254780474|r 233 MRFKFYGK 240 (332) Q Consensus 233 M~f~v~v~ 240 (332) |...++|. T Consensus 91 M~G~I~Ve 98 (98) T 1pcs_A 91 MVGKVVVE 98 (98) T ss_dssp CEEEEEEC T ss_pred CEEEEEEC T ss_conf 87999989 No 27 >3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Probab=92.79 E-value=0.27 Score=27.55 Aligned_cols=78 Identities=9% Similarity=-0.024 Sum_probs=51.7 Q ss_pred EEEEEECCCEEEEEEEECCC------CHHCCCHHHCC-----EECCCCCCCEEEEEEECCCEEEEEECCCCC-C-CCCCC Q ss_conf 06896369828999983581------01102201074-----031169851489999427748966613326-5-76113 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSV------MNSFYIPGLAG-----QIYAMAGMETKLHAVMNKKGAYSGFSANYS-G-RGFSH 232 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DV------iHSF~IP~l~~-----k~daiPG~~t~l~~~a~~~G~y~G~cae~c-G-~ghs~ 232 (332) -.|.+..|..|+++++-+-- -|...+|...+ |.-..||..-...|.++++|+|.--|..-. + .-.+. T Consensus 66 P~Ir~~~GD~v~v~~~N~l~~~~siH~HG~~~~~~dg~~~~t~~~I~PG~~~tY~f~~~~~Gt~wYH~H~~~~~~q~~~G 145 (288) T 3gdc_A 66 PTLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288) T ss_dssp CEEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT T ss_pred CEEEEECCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCHHHHHCCE T ss_conf 73999769699999997998971385388877876789986657668999899999821573888825544458763010 Q ss_pred CEEEEEECCHH Q ss_conf 65899970889 Q gi|254780474|r 233 MRFKFYGKSEK 243 (332) Q Consensus 233 M~f~v~v~s~~ 243 (332) |..-.++.+++ T Consensus 146 L~G~lIV~~~~ 156 (288) T 3gdc_A 146 LYGGFIVEPKE 156 (288) T ss_dssp CEEEEEEECSS T ss_pred EEEEEEECCCC T ss_conf 08999921667 No 28 >2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Probab=92.40 E-value=0.58 Score=25.12 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=50.1 Q ss_pred EEEEEECCCEEEEEEEECCCCHHCCCHHH--CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-H Q ss_conf 06896369828999983581011022010--74031169851489999427748966613326576113658999708-8 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVMNSFYIPGL--AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-E 242 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DViHSF~IP~l--~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~ 242 (332) ..|.+.+|..|+|.-+. ..-|...+..- .+.-....++.....++.+++|+|.-+|.- |..|...++|.+ + T Consensus 21 ~~ltI~~GdTV~w~n~d-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~Y~Y~C~~-----H~gM~G~IvVgd~~ 94 (122) T 2ux6_A 21 ASLKVAPGDTVTFIPTD-KGHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP-----HPFMVGVVQVGDAP 94 (122) T ss_dssp SEEEECTTEEEEEEESS-SSCCCEECTTCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT-----EEEEEEEEEESSSC T ss_pred CEEEECCCCEEEEEECC-CCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCC-----CCCCEEEEEECCCC T ss_conf 88998799999999999-9841056202377765433456774078864768179997468-----87878999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780474|r 243 KGFED 247 (332) Q Consensus 243 ~~f~~ 247 (332) ...++ T Consensus 95 ~n~~~ 99 (122) T 2ux6_A 95 ANLEA 99 (122) T ss_dssp TTHHH T ss_pred CCHHH T ss_conf 89899 No 29 >1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus pcc 7942} SCOP: b.6.1.1 PDB: 1bxu_A Probab=92.28 E-value=0.57 Score=25.19 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=46.7 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCCHHH----CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC--CCCEEEEE Q ss_conf 306896369828999983581011022010----740311698514899994277489666133265761--13658999 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYIPGL----AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF--SHMRFKFY 238 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~IP~l----~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh--s~M~f~v~ 238 (332) -.+|.+++|..|+|.-+ +...|.+.+... ....-..||.. ..++.+++|+|.-.|+- | ..|...++ T Consensus 18 P~~i~I~~GdtV~~~n~-~~~~h~~~~~~~~~~~~~~~~~~~g~t--~~~tF~~~G~y~y~C~~-----H~~~gM~G~I~ 89 (91) T 1bxv_A 18 PSTIEIQAGDTVQWVNN-KLAPHNVVVEGQPELSHKDLAFSPGET--FEATFSEPGTYTYYCEP-----HRGAGMVGKIV 89 (91) T ss_dssp SSEEEECTTCEEEEEEC-SSCCEEEEETTCGGGCEEEEECSTTCE--EEEECCSCEEEEEECTT-----TGGGTCEEEEE T ss_pred CCEEEECCCCEEEEEEC-CCCCEEEEECCCCCCCCCCCCCCCCCE--EEEEECCCCEEEEEECC-----CCCCCCEEEEE T ss_conf 99999999999999989-988512884275534556556179965--99996259879999787-----89999889999 Q ss_pred EC Q ss_conf 70 Q gi|254780474|r 239 GK 240 (332) Q Consensus 239 v~ 240 (332) |. T Consensus 90 Ve 91 (91) T 1bxv_A 90 VQ 91 (91) T ss_dssp EC T ss_pred EC T ss_conf 89 No 30 >1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Probab=91.56 E-value=0.35 Score=26.66 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=55.0 Q ss_pred EEEEEECCCEEEEEEEECC-CCHHCCC--HH------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCC----CCCC Q ss_conf 0689636982899998358-1011022--01------07403116985148999942774896661332657----6113 Q gi|254780474|r 166 NELVVPIDRPLEFRITASS-VMNSFYI--PG------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGR----GFSH 232 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~D-ViHSF~I--P~------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~----ghs~ 232 (332) -.|.+-+|..|+++++-+. -+|.-|+ +. -..+.-..||..-...|.++++|.|.-.|..-.+. .-+. T Consensus 64 P~ir~~~Gd~v~v~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~i~PG~~~~y~f~~~~~g~~~yh~h~~~~~~~~~~~~G 143 (333) T 1mzy_A 64 PLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSG 143 (333) T ss_dssp CEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHTT T ss_pred CEEEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHHCC T ss_conf 63999679899999975899845775350576788998874218899989999982898501243166555551110124 Q ss_pred CEEEEEECCHH Q ss_conf 65899970889 Q gi|254780474|r 233 MRFKFYGKSEK 243 (332) Q Consensus 233 M~f~v~v~s~~ 243 (332) |....++..++ T Consensus 144 l~G~~iv~~~~ 154 (333) T 1mzy_A 144 MAGCIMVLPRD 154 (333) T ss_dssp CEEEEEEECTT T ss_pred CCCCCCCCCCC T ss_conf 45520125777 No 31 >1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* 1gs7_A* 2bp0_B 1gs6_X 2bo0_A* ... Probab=91.50 E-value=0.73 Score=24.44 Aligned_cols=102 Identities=12% Similarity=0.017 Sum_probs=63.7 Q ss_pred EEEEEEEEEEEEEEEECC--------CCCCCCEEEEEECCCEEEEEEEECC---CCHHCCCHHH------CCEECCCCCC Q ss_conf 689999984369999626--------7877430689636982899998358---1011022010------7403116985 Q gi|254780474|r 142 LVVEVVALDWKWLFLLPE--------QQVAIINELVVPIDRPLEFRITASS---VMNSFYIPGL------AGQIYAMAGM 204 (332) Q Consensus 142 l~I~V~a~qW~W~F~YP~--------~giatvneL~lPv~~pV~f~ltS~D---ViHSF~IP~l------~~k~daiPG~ 204 (332) ++++.++.+-...+.-|. .|-.---.|.+-.|..|+++++-+. .-|+.-.+.. ..+.-..||. T Consensus 33 ~~~~l~~~~~~~~~~~~g~~~~~~~~ng~~pGP~ir~~~Gd~v~v~~~N~~~~~~~h~i~~hg~~~~~~~~~~~~i~Pg~ 112 (336) T 1oe1_A 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGE 112 (336) T ss_dssp EEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCCEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTE T ss_pred EEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCEEEEECCCEEEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCC T ss_conf 99999999999997789969889998993679719997799999999979999642564618867889886136899999 Q ss_pred CEEEEEEECCCEEEEEECCCCCCCC---CCCCEEEEEECCHH Q ss_conf 1489999427748966613326576---11365899970889 Q gi|254780474|r 205 ETKLHAVMNKKGAYSGFSANYSGRG---FSHMRFKFYGKSEK 243 (332) Q Consensus 205 ~t~l~~~a~~~G~y~G~cae~cG~g---hs~M~f~v~v~s~~ 243 (332) .-...|.++++|+|.--|.-....+ -+.|..-.++.+++ T Consensus 113 ~~ty~~~~~~~Gt~~yH~h~~~~~~~q~~~GL~G~lIV~~~~ 154 (336) T 1oe1_A 113 QATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRD 154 (336) T ss_dssp EEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTT T ss_pred EEEEEEECCCCCCEEEEECCCCCCCHHHHCCCCCEEEEECCC T ss_conf 799999807987057751356653233433642013650466 No 32 >1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Probab=91.46 E-value=0.6 Score=25.02 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=45.0 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCC--HHHC-------------CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC Q ss_conf 306896369828999983581011022--0107-------------4031169851489999427748966613326576 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYI--PGLA-------------GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG 229 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~I--P~l~-------------~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~g 229 (332) -.+|.+.+|..|+|... +...|.+-. |+.. .-....++......++.+++|+|.-.|+- T Consensus 16 P~~itv~~GdtV~f~n~-~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~y~C~~----- 89 (102) T 1kdj_A 16 PDSITVSAGEAVEFTLV-GETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCTP----- 89 (102) T ss_dssp SSEEEECTTCCEEEEEC-SSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEECST----- T ss_pred CCEEEECCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC----- T ss_conf 89999889999999989-998751677367877766444556576565553468974799994888379999787----- Q ss_pred CCC--CEEEEEEC Q ss_conf 113--65899970 Q gi|254780474|r 230 FSH--MRFKFYGK 240 (332) Q Consensus 230 hs~--M~f~v~v~ 240 (332) |.. |...++|. T Consensus 90 H~~~GM~G~I~Ve 102 (102) T 1kdj_A 90 HKSANMKGTLTVK 102 (102) T ss_dssp TGGGTCEEEEEEC T ss_pred CCCCCCEEEEEEC T ss_conf 7668986999989 No 33 >3erx_A Pseudoazurin; copper protein, high-resolution, C electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A Probab=90.59 E-value=0.83 Score=24.03 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=50.4 Q ss_pred EEEEEECCCEEEEEEEECCCCHHCCCHH--HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC--CEEEEEECC Q ss_conf 0689636982899998358101102201--074031169851489999427748966613326576113--658999708 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVMNSFYIPG--LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH--MRFKFYGKS 241 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DViHSF~IP~--l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~--M~f~v~v~s 241 (332) .+|.+++|..|+|.-+... .|.-.+.. ....-...++.......+.+++|+|.-.|+= |.. |...++|-+ T Consensus 21 ~~itI~~GDTV~w~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p-----H~~~GM~G~I~Vg~ 94 (123) T 3erx_A 21 AFVRAEPGDVINFVPTDKS-HNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKCTP-----HFGMGMVGLVQVGD 94 (123) T ss_dssp SEEEECTTEEEEEEESSTT-CCCEECTTSSCTTCCCCBCCTTCCEEEEECSCEEEEEECGG-----GTTTTCEEEEEESS T ss_pred CEEEECCCCEEEEEECCCC-CCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEE-----CCCCCCEEEEEECC T ss_conf 9899859998999506678-72364257787542221225774268642579659999410-----77889789999899 Q ss_pred -HHHHHHH Q ss_conf -8999999 Q gi|254780474|r 242 -EKGFEDW 248 (332) Q Consensus 242 -~~~f~~W 248 (332) +...+++ T Consensus 95 ~~~~~~~~ 102 (123) T 3erx_A 95 APENLDAA 102 (123) T ss_dssp SCTTHHHH T ss_pred CCCCHHHH T ss_conf 99898898 No 34 >3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} Probab=90.58 E-value=0.63 Score=24.90 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=50.5 Q ss_pred EEEEEECCCEEEEEEEECCCCHHCCC--HHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC--CEEEEEECC Q ss_conf 06896369828999983581011022--01074031169851489999427748966613326576113--658999708 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVMNSFYI--PGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH--MRFKFYGKS 241 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DViHSF~I--P~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~--M~f~v~v~s 241 (332) .+|.+.+|..|+|.-+... .|.-.+ |...+-.....++-....++.+++|+|.-.|.= |.. |...++|-. T Consensus 22 ~~itI~~GdTV~w~~~~~~-h~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p-----H~~~GM~G~IvVg~ 95 (124) T 3ef4_A 22 GFVKVEAGDTVKFVPTDKS-HNAESVREVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCAP-----HYGMGMVVLVQVGK 95 (124) T ss_dssp SEEEECTTCEEEEECSSSS-CCCEECTTTSCTTSCCCBCCTTCCEEEECCSSEEEEEECTT-----TGGGTCEEEEEESS T ss_pred CEEEECCCCEEEEEECCCC-CCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECC-----CCCCCCEEEEEECC T ss_conf 8799889998999778988-74374157666665544555450023441477479998021-----74689789999999 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 899999999986072 Q gi|254780474|r 242 EKGFEDWISKVKRQG 256 (332) Q Consensus 242 ~~~f~~Wv~~~ka~~ 256 (332) +..-++ +++.|..+ T Consensus 96 ~~n~e~-~~~~~~~~ 109 (124) T 3ef4_A 96 PVNLDQ-IKEYKATG 109 (124) T ss_dssp CTTHHH-HHHSCCCH T ss_pred CCCHHH-HHHCCCCH T ss_conf 899899-97553516 No 35 >3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Probab=90.49 E-value=0.9 Score=23.79 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=48.2 Q ss_pred CCEEEEEECCCEEEEEEEECCCCHHCCCHHH---------C-----CEECCCCCCCEEEEEEEC-CCEEEEEECCCCCCC Q ss_conf 4306896369828999983581011022010---------7-----403116985148999942-774896661332657 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSVMNSFYIPGL---------A-----GQIYAMAGMETKLHAVMN-KKGAYSGFSANYSGR 228 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DViHSF~IP~l---------~-----~k~daiPG~~t~l~~~a~-~~G~y~G~cae~cG~ 228 (332) +-.+|.+++|..|+|.- .+..-|++-+-.- . ...-..||-.-..-|.++ ++|+|.-.|+- T Consensus 17 ~P~~itV~~GdtV~f~n-~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~s~~~tF~~~~~~G~Y~y~C~p---- 91 (105) T 3cvb_A 17 EPANVTVHPGDTVKWVN-NKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAP---- 91 (105) T ss_dssp ESSEEEECTTEEEEEEE-CSSCCEEEEECTTSSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECTT---- T ss_pred ECCEEEECCCCEEEEEE-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECC---- T ss_conf 58999996999999987-8889851785057677765345665565533237996799999337668438898673---- Q ss_pred CC--CCCEEEEEEC Q ss_conf 61--1365899970 Q gi|254780474|r 229 GF--SHMRFKFYGK 240 (332) Q Consensus 229 gh--s~M~f~v~v~ 240 (332) | +.|..+++|. T Consensus 92 -H~~~GM~G~I~Ve 104 (105) T 3cvb_A 92 -HRGAGMVGKITVE 104 (105) T ss_dssp -TGGGTCEEEEEEC T ss_pred -CCCCCCEEEEEEC T ss_conf -7899868999981 No 36 >1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Probab=90.39 E-value=0.91 Score=23.73 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=43.6 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCCHH------------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC-- Q ss_conf 30689636982899998358101102201------------0740311698514899994277489666133265761-- Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYIPG------------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF-- 230 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~IP~------------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh-- 230 (332) -.+|.+.+|..|+|.-.+ ..-|....-. -+......++-.....++.+++|+|.-.|+- | T Consensus 16 P~~i~i~~GdtV~f~n~~-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~Gty~y~C~~-----H~~ 89 (99) T 1byp_A 16 PSDLSIASGEKITFKNNA-GFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAP-----HAG 89 (99) T ss_dssp SSEEEECTTEEEEEEECS-SCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECGG-----GTT T ss_pred CCEEEECCCCEEEEEECC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECC-----CCC T ss_conf 899998899999999999-89740587347777765435677544565568885699994788259999786-----788 Q ss_pred CCCEEEEEE Q ss_conf 136589997 Q gi|254780474|r 231 SHMRFKFYG 239 (332) Q Consensus 231 s~M~f~v~v 239 (332) +.|...++| T Consensus 90 ~GM~G~I~V 98 (99) T 1byp_A 90 AGMVGKVTV 98 (99) T ss_dssp TTCEEEEEE T ss_pred CCCEEEEEE T ss_conf 897799998 No 37 >1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Probab=89.42 E-value=1 Score=23.40 Aligned_cols=77 Identities=10% Similarity=-0.038 Sum_probs=57.2 Q ss_pred EEEEEECCCEEEEEEEEC---CCCHHCCCHHHCC-----------EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC Q ss_conf 068963698289999835---8101102201074-----------03116985148999942774896661332657611 Q gi|254780474|r 166 NELVVPIDRPLEFRITAS---SVMNSFYIPGLAG-----------QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFS 231 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~---DViHSF~IP~l~~-----------k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs 231 (332) ..|.+..|++|+++|-+- +=+|+|.+..-.. -+...||-...+.++++.||+|...|-- .-..++ T Consensus 239 p~l~~~~Ge~vr~~lin~G~~~d~h~~h~hG~~f~~~~~~~~~~dt~~l~Pg~~~tv~m~~~~pG~w~~~chv-~~H~~~ 317 (647) T 1sdd_B 239 PGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEV-GEIQRA 317 (647) T ss_dssp CCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCEEESSEEECTTEEEEEEEECCSSEEEEEECCC-HHHHTT T ss_pred CCEEEECCCEEEEEEEECCCCCCCEEEEEECCEEEECCCCCCEECEEEECCCEEEEEEEECCCCEEEEEEECC-HHHHHC T ss_conf 8759836998999999578998742389918599982678825134996995089999996898789999266-257637 Q ss_pred CCEEEEEECCHH Q ss_conf 365899970889 Q gi|254780474|r 232 HMRFKFYGKSEK 243 (332) Q Consensus 232 ~M~f~v~v~s~~ 243 (332) .|.....|.+.+ T Consensus 318 GM~~~~~v~~~~ 329 (647) T 1sdd_B 318 GMQTPFLIVDRE 329 (647) T ss_dssp TCEEEEEEECTT T ss_pred CCCCCEEECCCC T ss_conf 133421231333 No 38 >1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Probab=88.66 E-value=0.36 Score=26.63 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=53.6 Q ss_pred CEEEEEECCCEEEEEEEECC---CCHHCCCHHH------CCEECCCCCCCEEEEEEECCCEEEEEECCCCC-C-CCCCCC Q ss_conf 30689636982899998358---1011022010------74031169851489999427748966613326-5-761136 Q gi|254780474|r 165 INELVVPIDRPLEFRITASS---VMNSFYIPGL------AGQIYAMAGMETKLHAVMNKKGAYSGFSANYS-G-RGFSHM 233 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~D---ViHSF~IP~l------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c-G-~ghs~M 233 (332) --.|.+..|..|+++++-+. .+|+.-.+.- ..+--..||..-+..|+++++|+|.--|..-. + .-.+.| T Consensus 69 GP~ir~~~Gd~v~v~~~N~~~~~~~H~~~~~~~~~~~g~~~~~~i~PG~t~~Y~f~~~~~Gt~wYH~H~~~~~~q~~~GL 148 (327) T 1kbv_A 69 GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGM 148 (327) T ss_dssp CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTC T ss_pred CCEEEEECCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHCCC T ss_conf 97199977989999999799884030554215778888875153569986999998899836555168777267663255 Q ss_pred EEEEEECCHH Q ss_conf 5899970889 Q gi|254780474|r 234 RFKFYGKSEK 243 (332) Q Consensus 234 ~f~v~v~s~~ 243 (332) ..-+++.+++ T Consensus 149 ~G~lIV~~~~ 158 (327) T 1kbv_A 149 YGLILVEPKE 158 (327) T ss_dssp EEEEEEECTT T ss_pred CCEEEECCCC T ss_conf 3036863887 No 39 >1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Probab=87.84 E-value=1.4 Score=22.50 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=43.7 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCC---------HHHC-CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC--CC Q ss_conf 306896369828999983581011022---------0107-40311698514899994277489666133265761--13 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYI---------PGLA-GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF--SH 232 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~I---------P~l~-~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh--s~ 232 (332) -.+|.+.+|..|+|..++..- |.+-+ |... .....-||- ...++.+++|+|.-.|.- | .. T Consensus 18 P~~i~I~~GdtV~f~n~~~~~-h~~~~~~~~~~~~~~~~~~~~~~~~~g~--t~~~tF~~~G~Y~Y~C~p-----H~~~G 89 (97) T 1b3i_A 18 PKALSISAGDTVEFVMNKVGP-HNVIFDKVPAGESAPALSNTKLAIAPGS--FYSVTLGTPGTYSFYCTP-----HRGAG 89 (97) T ss_dssp SSEEEECTTCEEEEEECSSCC-CCBEEEECCTTSCHHHHCBCCCCCSCSC--CEEEECCSCSEEEEECSS-----TTTTT T ss_pred CCEEEECCCCEEEEEECCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCE--EEEEECCCCEEEEEEEEE-----CCCCC T ss_conf 899999899999999899886-1279701677665776455554568635--899976898789999623-----79999 Q ss_pred CEEEEEEC Q ss_conf 65899970 Q gi|254780474|r 233 MRFKFYGK 240 (332) Q Consensus 233 M~f~v~v~ 240 (332) |..+++|. T Consensus 90 M~G~I~Ve 97 (97) T 1b3i_A 90 MVGTITVE 97 (97) T ss_dssp CEEEEEEC T ss_pred CEEEEEEC T ss_conf 77999989 No 40 >1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Probab=87.67 E-value=1.4 Score=22.43 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=42.8 Q ss_pred CCEEEEEECCCEEEEEEEECCCCHHCCC-----HHH----C-----CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC Q ss_conf 4306896369828999983581011022-----010----7-----4031169851489999427748966613326576 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSVMNSFYI-----PGL----A-----GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRG 229 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DViHSF~I-----P~l----~-----~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~g 229 (332) .-++|.+.+|..|+|.-. +...|.+-. |+- . ......||. ...++.+++|+|.-.|+- T Consensus 15 ~P~~i~i~~GdtV~f~n~-~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~f~~~G~y~y~C~~----- 86 (99) T 1plc_A 15 VPSEFSISPGEKIVFKNN-AGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGE--TFEVALSNKGEYSFYCSP----- 86 (99) T ss_dssp ESSEEEECTTCEEEEEEC-SSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTC--EEEEECCSCEEEEEECGG----- T ss_pred ECCEEEECCCCEEEEEEC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEECCCCEEEEEECC----- T ss_conf 289999889999999999-999621787057777765235775445665458885--699996578629998078----- Q ss_pred CCC--CEEEEEE Q ss_conf 113--6589997 Q gi|254780474|r 230 FSH--MRFKFYG 239 (332) Q Consensus 230 hs~--M~f~v~v 239 (332) |.. |...++| T Consensus 87 H~~~GM~G~I~V 98 (99) T 1plc_A 87 HQGAGMVGKVTV 98 (99) T ss_dssp GTTTTCEEEEEE T ss_pred CCCCCCEEEEEE T ss_conf 876786799998 No 41 >2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Probab=87.41 E-value=1.4 Score=22.33 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=46.2 Q ss_pred CCEEEEEECCCEEEEEEEECCCCHHCCC-----H--------HHCC-EECCCCCCCEEEEEE-ECCCEEEEEECCCCCCC Q ss_conf 4306896369828999983581011022-----0--------1074-031169851489999-42774896661332657 Q gi|254780474|r 164 IINELVVPIDRPLEFRITASSVMNSFYI-----P--------GLAG-QIYAMAGMETKLHAV-MNKKGAYSGFSANYSGR 228 (332) Q Consensus 164 tvneL~lPv~~pV~f~ltS~DViHSF~I-----P--------~l~~-k~daiPG~~t~l~~~-a~~~G~y~G~cae~cG~ 228 (332) +-++|.+++|..|+|...+ ...|.+-+ | .+.. -.-..|+....+.+. ++++|+|.-+|+- T Consensus 18 ~P~~i~i~~GdtV~f~n~~-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~y~y~C~~---- 92 (106) T 2gim_A 18 EPAKLTIKPGDTVEFLNNK-VPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEP---- 92 (106) T ss_dssp ESSEEEECTTCEEEEEECS-SSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECTT---- T ss_pred ECCEEEECCCCEEEEEECC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECC---- T ss_conf 6899998899999999899-98632787147877644355775555642237887578999726888029999777---- Q ss_pred CCCC--CEEEEEEC Q ss_conf 6113--65899970 Q gi|254780474|r 229 GFSH--MRFKFYGK 240 (332) Q Consensus 229 ghs~--M~f~v~v~ 240 (332) |.. |...++|. T Consensus 93 -H~~~GM~G~I~V~ 105 (106) T 2gim_A 93 -HRGAGMVGKITVA 105 (106) T ss_dssp -TGGGTCEEEEEEC T ss_pred -CCCCCCEEEEEEE T ss_conf -6678856999995 No 42 >2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Probab=86.94 E-value=1.5 Score=22.15 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=42.9 Q ss_pred CEEEEEECCCEEEEEEEECCCCHHCCC-----------HHHC-CEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC-- Q ss_conf 306896369828999983581011022-----------0107-40311698514899994277489666133265761-- Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVMNSFYI-----------PGLA-GQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF-- 230 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DViHSF~I-----------P~l~-~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh-- 230 (332) -++|.+.+|..|+|.-.+ ..-|.+-+ +... ......||-. ..++.+++|+|.-.|+ -| T Consensus 17 P~~iti~~GdtV~f~n~~-~~~h~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~tf~~~Gty~y~C~-----pH~~ 88 (98) T 2plt_A 17 PKTLTIKSGETVNFVNNA-GFPHNIVFDEDAIPSGVNADAISRDDYLNAPGET--YSVKLTAAGEYGYYCE-----PHQG 88 (98) T ss_dssp SSEEEECTTCEEEEEECS-SCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCE--EEEECCSCEEEEEECG-----GGGG T ss_pred CCEEEECCCCEEEEEECC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCE--EEEECCCCEEEEEEEC-----CCCC T ss_conf 899999999999999899-9983289717875457777643455556789967--9996578827999964-----0799 Q ss_pred CCCEEEEEEC Q ss_conf 1365899970 Q gi|254780474|r 231 SHMRFKFYGK 240 (332) Q Consensus 231 s~M~f~v~v~ 240 (332) +.|...++|. T Consensus 89 ~GM~G~I~Ve 98 (98) T 2plt_A 89 AGMVGKIIVQ 98 (98) T ss_dssp GTCEEEEEEC T ss_pred CCCEEEEEEC T ss_conf 9977999989 No 43 >3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal binding protein; 1.90A {Nitrosomonas europaea} Probab=83.57 E-value=2.2 Score=21.09 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=42.6 Q ss_pred EEEEECCCEEEEEEEECCC-CHHCCCHH-----------------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCC Q ss_conf 6896369828999983581-01102201-----------------074031169851489999427748966613326 Q gi|254780474|r 167 ELVVPIDRPLEFRITASSV-MNSFYIPG-----------------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYS 226 (332) Q Consensus 167 eL~lPv~~pV~f~ltS~DV-iHSF~IP~-----------------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c 226 (332) .|.+..|+.++|++-.... .|.|.+.. ..-.+..-||.+-.+-+++++||.|.-.|..+. T Consensus 179 ~l~v~~Ge~vrlRliNa~~~~~~~~i~gh~~~Via~DG~~~~~P~~~d~v~l~pGeR~dv~v~~~~pG~~~~~~h~~~ 256 (318) T 3g5w_A 179 PIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDT 256 (318) T ss_dssp CEEECTTCEEEEEEEECSSSCEEEEETTSCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESSGG T ss_pred CEEECCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCEECCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEECCHH T ss_conf 489748979999998526515556708976999998997825876985899799877999998899845799954678 No 44 >1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreductase; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} Probab=81.30 E-value=2.6 Score=20.51 Aligned_cols=80 Identities=8% Similarity=0.065 Sum_probs=55.5 Q ss_pred CEEEEEECCCEEEEEEEECCCC--------HHCCCHHHCC-----------------------------EECCCCCCCEE Q ss_conf 3068963698289999835810--------1102201074-----------------------------03116985148 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSVM--------NSFYIPGLAG-----------------------------QIYAMAGMETK 207 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DVi--------HSF~IP~l~~-----------------------------k~daiPG~~t~ 207 (332) .+.+.++.|+-|++.|...+.+ |+|+|-+-++ -+..-||-... T Consensus 369 ~~~~~~~~g~~veivi~N~~~~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~rDTv~v~~~g~~v 448 (534) T 1zpu_A 369 THTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFV 448 (534) T ss_dssp SCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEE T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE T ss_conf 42599569978999992799999781867985089610587665434554334755566555689764489969998899 Q ss_pred EEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHH Q ss_conf 999942774896661332657611365899970889999 Q gi|254780474|r 208 LHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFE 246 (332) Q Consensus 208 l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~ 246 (332) ++|++|.||.|---|-..-=. .+.|-. +.++.|++-. T Consensus 449 irf~adnPG~w~~HCHi~~H~-~~GM~~-~~~e~p~~~~ 485 (534) T 1zpu_A 449 IRFKADNPGVWFFHCHIEWHL-LQGLGL-VLVEDPFGIQ 485 (534) T ss_dssp EEEECCSCEEEEEEECCHHHH-HTTCEE-EEEECHHHHH T ss_pred EEEEECCCEEEEEECCCHHHH-HCCCCE-EEEECHHHHH T ss_conf 999938987336804888897-674847-9899835741 No 45 >1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Probab=78.88 E-value=3.1 Score=19.98 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=43.1 Q ss_pred EEEEEECCCEEEEEEEECCCCHHCCCHHHC-----------CEECC-CCCCCEEEEEEECCCEEEEEECCCCCCCCCCC- Q ss_conf 068963698289999835810110220107-----------40311-69851489999427748966613326576113- Q gi|254780474|r 166 NELVVPIDRPLEFRITASSVMNSFYIPGLA-----------GQIYA-MAGMETKLHAVMNKKGAYSGFSANYSGRGFSH- 232 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DViHSF~IP~l~-----------~k~da-iPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~- 232 (332) .+|.+++|..|+|.-.+ ..-|.+.+-.-. ..-.. -||. ...++.+++|+|.-.|+- |.. T Consensus 18 ~~i~i~~GdtV~f~n~~-~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~tf~~~Gty~y~C~~-----H~~~ 89 (98) T 1iuz_A 18 SKISVAAGEAIEFVNNA-GFPHNIVFDEDAVPAGVDADAISYDDYLNSKGE--TVVRKLSTPGVYGVYCEP-----HAGA 89 (98) T ss_dssp SEEEECTTCEEEEEECS-SCCEEEEECTTSSCTTCCHHHHCEEEEECSTTC--EEEEECCSCEEEEEECTT-----TGGG T ss_pred CEEEECCCCEEEEEECC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC--EEEEECCCCEEEEEEECC-----CCCC T ss_conf 99999999999999999-986227884587777765554454565668986--799987899889999686-----8678 Q ss_pred -CEEEEEEC Q ss_conf -65899970 Q gi|254780474|r 233 -MRFKFYGK 240 (332) Q Consensus 233 -M~f~v~v~ 240 (332) |..+++|. T Consensus 90 GM~G~I~Ve 98 (98) T 1iuz_A 90 GMKMTITVQ 98 (98) T ss_dssp TCEEEEEEC T ss_pred CCEEEEEEC T ss_conf 976999989 No 46 >2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A 2e86_A ... Probab=73.66 E-value=4.2 Score=19.03 Aligned_cols=77 Identities=17% Similarity=0.053 Sum_probs=50.8 Q ss_pred EEEEEECCCEEEEEEEECCC-C--HHCCCHH------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCC---CCCCC Q ss_conf 06896369828999983581-0--1102201------07403116985148999942774896661332657---61136 Q gi|254780474|r 166 NELVVPIDRPLEFRITASSV-M--NSFYIPG------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGR---GFSHM 233 (332) Q Consensus 166 neL~lPv~~pV~f~ltS~DV-i--HSF~IP~------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~---ghs~M 233 (332) -.|.+-.|..|+++++.++. + |+-..+. -..+.-.-||.+-...|.++++|+|.--|.--.-. -.+.| T Consensus 71 P~ir~~~Gd~v~v~l~N~~~t~h~Hgi~~~~~~~~~~~~~~~~v~PG~~~~y~~~~~~~gt~~YH~h~~~~~~~~~~~gl 150 (340) T 2bw4_A 71 PLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM 150 (340) T ss_dssp CEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTC T ss_pred CEEEEECCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHCCC T ss_conf 74999779899999992899804268762786778887742108899989999985689648997445555333432244 Q ss_pred EEEEEECCH Q ss_conf 589997088 Q gi|254780474|r 234 RFKFYGKSE 242 (332) Q Consensus 234 ~f~v~v~s~ 242 (332) ....++..+ T Consensus 151 ~g~~iv~~~ 159 (340) T 2bw4_A 151 NGAIMVLPR 159 (340) T ss_dssp EEEEEEECT T ss_pred CCCCCCCCC T ss_conf 651013367 No 47 >2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} Probab=67.60 E-value=1.6 Score=22.09 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999885 Q gi|254780474|r 46 QASLIRIAVALMLLIVVPVFFSILFFAWK 74 (332) Q Consensus 46 ~~~L~~~~~~l~liV~v~V~~l~~~~~~k 74 (332) ....-++...+..+..+.+++++.|.+|| T Consensus 7 ~~~vP~WiIivsv~~GlLlL~ll~~~LwK 35 (54) T 2knc_A 7 ERAIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54) T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78887304699999999999999999998 No 48 >2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} Probab=67.04 E-value=5.7 Score=18.06 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=45.0 Q ss_pred CEEEEEECCCEEEEEEEECCC-CHHCCCH-----------------HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCC Q ss_conf 306896369828999983581-0110220-----------------1074031169851489999427748966613326 Q gi|254780474|r 165 INELVVPIDRPLEFRITASSV-MNSFYIP-----------------GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYS 226 (332) Q Consensus 165 vneL~lPv~~pV~f~ltS~DV-iHSF~IP-----------------~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~c 226 (332) .+.+.+..|+.+++++-+..- +|+|.+. .-.-.+..-||-+..+-+.+++||.|...|..+. T Consensus 178 ~~~~~v~~G~~~rlrlin~~~~~~~~~i~gh~~~vv~~DG~~~~~p~~~dt~~i~pger~dv~v~~~~pG~y~~~~h~~~ 257 (339) T 2zwn_A 178 TQPLRVKKGDVVKIRFFGAGGGIHAMHSHGHDMLVTHKDGLPLDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDT 257 (339) T ss_dssp SCCEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGG T ss_pred CCCEEEECCCEEEEEEECCCCCCCCEECCCCEEEEEEECCEECCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEECCHH T ss_conf 56579837988999997276663520418974999995990747876981999999998999999799876899978777 No 49 >2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B* Probab=66.69 E-value=0.52 Score=25.45 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=48.3 Q ss_pred EEEEECCCEEEEEEEE---CCCCHHCCCHHHC--------CEEC---CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC Q ss_conf 6896369828999983---5810110220107--------4031---169851489999427748966613326576113 Q gi|254780474|r 167 ELVVPIDRPLEFRITA---SSVMNSFYIPGLA--------GQIY---AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSH 232 (332) Q Consensus 167 eL~lPv~~pV~f~ltS---~DViHSF~IP~l~--------~k~d---aiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~ 232 (332) .|.+..|.+|+++|.+ .+-+|+|.+-.-. ..+| ..||-...+.++++.||+|.-.|-..- .-++. T Consensus 369 ~l~~~~Gd~Vrw~l~n~G~~~~~H~~H~hG~~f~v~~~~~~~~Dtv~l~Pg~~~tv~m~~~~pG~wl~hChv~~-H~~~G 447 (770) T 2r7e_B 369 GLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGE-HLHAG 447 (770) T ss_dssp CCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCCEESEEECCTTCCCEEEECCSSCBCCCBCCCSHH-HHTTB T ss_pred CCEECCCCEEEEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCHH-HHHCC T ss_conf 61671899899999958899886145981878999558993650299899826999998899867899817716-97687 Q ss_pred CEEEEEECC Q ss_conf 658999708 Q gi|254780474|r 233 MRFKFYGKS 241 (332) Q Consensus 233 M~f~v~v~s 241 (332) |.....|.+ T Consensus 448 M~a~~~V~~ 456 (770) T 2r7e_B 448 MSTLFLVYS 456 (770) T ss_dssp CCCCCCBCC T ss_pred CEEEEEECC T ss_conf 704999624 No 50 >2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Probab=65.49 E-value=6.1 Score=17.85 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=43.0 Q ss_pred EEEEECCCEEEEEEEECC--C-CHHCCCHHH--------CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEE Q ss_conf 689636982899998358--1-011022010--------74031169851489999427748966613326576113658 Q gi|254780474|r 167 ELVVPIDRPLEFRITASS--V-MNSFYIPGL--------AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRF 235 (332) Q Consensus 167 eL~lPv~~pV~f~ltS~D--V-iHSF~IP~l--------~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f 235 (332) .|.+-.|++|++++-... . +|++.+-.- .-.+...||....+.+++++||.|.-.|..+. .-++.|.. T Consensus 272 ~l~~~~g~~vr~~~in~g~~~~~h~~~~~G~~~~~~~~~~d~~~l~p~~~~~~~~~~~~pG~~~~~c~~~~-h~~~Gm~~ 350 (1065) T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLN-HLKAGLQA 350 (1065) T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEEETTCCEEETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHH-HHHTTCEE T ss_pred CEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCC-HHHCCCEE T ss_conf 62784899899999827898746889986953311874632599799718999998589951244202532-54368444 Q ss_pred EEEEC Q ss_conf 99970 Q gi|254780474|r 236 KFYGK 240 (332) Q Consensus 236 ~v~v~ 240 (332) ...+. T Consensus 351 ~~~v~ 355 (1065) T 2j5w_A 351 FFQVQ 355 (1065) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 89983 No 51 >2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 PDB: 2db9_A Probab=63.92 E-value=6.5 Score=17.66 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=38.2 Q ss_pred CCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC Q ss_conf 740311698514899994277489666133265761136589997088999999999860724569 Q gi|254780474|r 195 AGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLN 260 (332) Q Consensus 195 ~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~~l~ 260 (332) .++-|.++|-.|..++....-+.-+- |.=...|+..| +++||+.|.+..+.++..+- T Consensus 80 ~~k~Y~l~~~~T~~~L~l~~g~~~r~----~~l~~vSN~~f-----te~E~~~w~~~~~~~~~~~P 136 (153) T 2bze_A 80 TAKVYQLGGTRTNKGLQLRHGNDQRV----FRLEFVSNQEF-----TESEFMKWKEAMFSAGMQLP 136 (153) T ss_dssp EEEEEEETTEEEEEEEEEESSSCEEE----ECGGGBCCSCC-----CHHHHHHHHHHHHHHTCCCC T ss_pred CCCCCCCCCCCCCEEEEEEECCCCEE----EEEEEEECCCC-----CHHHHHHHHHHHHHCCCCCC T ss_conf 58634358852526999987896308----87688719999-----99999999999997699999 No 52 >1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Probab=62.06 E-value=7 Score=17.43 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=25.9 Q ss_pred EEEECCCEEEEEECC--CCCCCCCCCCEEEEEECCH Q ss_conf 999427748966613--3265761136589997088 Q gi|254780474|r 209 HAVMNKKGAYSGFSA--NYSGRGFSHMRFKFYGKSE 242 (332) Q Consensus 209 ~~~a~~~G~y~G~ca--e~cG~ghs~M~f~v~v~s~ 242 (332) .++-+++|.|+-.|+ ..|..| |++.|.|+.. T Consensus 73 ~~~l~~~G~~yFiC~~~~HC~~G---mk~~I~V~~~ 105 (116) T 1x9u_A 73 KIMLNTTGPQYYICTVGDHCRVG---QKLSINVVGA 105 (116) T ss_dssp EEECCSCEEEEEECCSTTTTTTT---CEEEEEEECC T ss_pred EEEECCCCCEEEECCCCCHHHCC---CEEEEEECCC T ss_conf 68860687779989982555679---9899998089 No 53 >3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Probab=58.08 E-value=8.2 Score=16.96 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=13.0 Q ss_pred CCCEEEEEEEHHHHHHHHHHHHHHH Q ss_conf 5661255302278999999999999 Q gi|254780474|r 90 HSTLLELFVWLVPLVIVGFLAVITW 114 (332) Q Consensus 90 hs~~lEi~wt~iP~iIi~~L~~~t~ 114 (332) .|+.+- .||..-+.+.++.++.=| T Consensus 50 ~~np~P-~ww~~~f~~tiv~~~~Y~ 73 (311) T 3mk7_C 50 YDNPLP-RWWFLLFIGTLVFGILYL 73 (311) T ss_dssp CCCCCC-HHHHHHHHHHHHHHHHHH T ss_pred CCCCCC-HHHHHHHHHHHHHHHHHH T ss_conf 038997-899999999999999999 No 54 >2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, acute phase, blood coagulation, calcium, disease mutation; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Probab=52.74 E-value=4.4 Score=18.87 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=52.8 Q ss_pred EEEEEECCCEEEEEEEE---CCCCHHCCCHH--------HCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCE Q ss_conf 06896369828999983---58101102201--------07403116985148999942774896661332657611365 Q gi|254780474|r 166 NELVVPIDRPLEFRITA---SSVMNSFYIPG--------LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMR 234 (332) Q Consensus 166 neL~lPv~~pV~f~ltS---~DViHSF~IP~--------l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~ 234 (332) ..|.+..|++|++++-. ..-+|++.+.. -...++..||......+.+..+|.+...|...+ ...+.|. T Consensus 244 ~~l~~~~g~~~r~~lin~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~ 322 (742) T 2r7e_A 244 PGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCHISS-HQHDGME 322 (742) T ss_dssp CCCEECSSSCEEEECCCCCSSSCCCCCCCTTCCCEETTEECCSCCCCTTCCCEEEECCCSCSEECCCCCSSS-SSTTSCC T ss_pred CCEEECCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCC-CCCCCCC T ss_conf 861577899999998448888641047863717999440276224237752478874266640344113354-4134663 Q ss_pred EEEEECC Q ss_conf 8999708 Q gi|254780474|r 235 FKFYGKS 241 (332) Q Consensus 235 f~v~v~s 241 (332) ....+.. T Consensus 323 ~~~~v~~ 329 (742) T 2r7e_A 323 AYVKVDS 329 (742) T ss_dssp BCEEECC T ss_pred EEEEEEC T ss_conf 6999712 No 55 >1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Probab=42.85 E-value=14 Score=15.34 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=25.9 Q ss_pred EEEEECCCEEEEEECCC--CCCCCCCCCEEEEEECCHH Q ss_conf 99994277489666133--2657611365899970889 Q gi|254780474|r 208 LHAVMNKKGAYSGFSAN--YSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 208 l~~~a~~~G~y~G~cae--~cG~ghs~M~f~v~v~s~~ 243 (332) .-++.+++|.|+-.|+. -|..| |++.|.|+... T Consensus 76 ~~~~l~~~G~~yFic~~~~HC~~G---mKl~I~V~~~~ 110 (138) T 1jer_A 76 VIERLDELGMHYFVCTVGTHCSNG---QKLSINVVAAN 110 (138) T ss_dssp EEEECCSSEEEEEECCSTTTGGGT---CEEEEEEECCC T ss_pred EEEEECCCCCEEEECCCCCCCCCC---CEEEEEEECCC T ss_conf 899824883479978886811079---98999985898 No 56 >1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Probab=42.04 E-value=14 Score=15.25 Aligned_cols=33 Identities=6% Similarity=0.043 Sum_probs=26.0 Q ss_pred EEEEECCCEEEEEECCC--CCCCCCCCCEEEEEECCHH Q ss_conf 99994277489666133--2657611365899970889 Q gi|254780474|r 208 LHAVMNKKGAYSGFSAN--YSGRGFSHMRFKFYGKSEK 243 (332) Q Consensus 208 l~~~a~~~G~y~G~cae--~cG~ghs~M~f~v~v~s~~ 243 (332) ..++.+++|.|+-.|+. -|-.| |++.+.|.+.. T Consensus 72 ~~v~l~~~G~~yF~c~~~~hC~~G---mk~~I~V~~~~ 106 (109) T 1ws8_A 72 DSIPLKRPGTFYFLCGIPGHCQLG---QKVEIKVDPGS 106 (109) T ss_dssp EEEECCSSEEEEEECCSTTTTTTT---CEEEEEECC-- T ss_pred EEEEECCCCEEEEECCCCCHHHCC---CEEEEEEECCC T ss_conf 899976881189989982566689---98999984899 No 57 >2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens} Probab=41.57 E-value=12 Score=15.89 Aligned_cols=37 Identities=8% Similarity=-0.022 Sum_probs=17.6 Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHH Q ss_conf 89999427748966613326576113658999708899 Q gi|254780474|r 207 KLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKG 244 (332) Q Consensus 207 ~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~ 244 (332) .+.|++.++|.|...- .|+|.--..-+|.+.+..... T Consensus 58 ~v~f~P~~~G~~~v~V-~~~g~~V~gSPf~v~v~~~~~ 94 (191) T 2k7q_A 58 GISFVPKETGEHLVHV-KKNGQHVASSPIPVVISQSEI 94 (191) T ss_dssp EEECCCSSSEEEEEEE-EETTEECTTCSEEEEECGGGT T ss_pred EEEEEECCCCCEEEEE-EECCEEECCCCCEEEECCCCC T ss_conf 9999979784589999-999968269883787334455 No 58 >1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 Probab=39.89 E-value=3.5 Score=19.56 Aligned_cols=76 Identities=7% Similarity=-0.079 Sum_probs=42.9 Q ss_pred EEEEECCCEEEEEEEECCC------CHHCCCHHHC--------------CEECCCCCCCEEEEEEECCC----------E Q ss_conf 6896369828999983581------0110220107--------------40311698514899994277----------4 Q gi|254780474|r 167 ELVVPIDRPLEFRITASSV------MNSFYIPGLA--------------GQIYAMAGMETKLHAVMNKK----------G 216 (332) Q Consensus 167 eL~lPv~~pV~f~ltS~DV------iHSF~IP~l~--------------~k~daiPG~~t~l~~~a~~~----------G 216 (332) .|..=+|-.|++.++-..- -|....+... .+--.-||.+-.-.+.++++ | T Consensus 61 ~Ira~~GD~v~V~~~N~~~~~~sih~HGv~~~~~~~~~~~~dg~~~~~~~~~~I~PG~~~tY~~~v~~~~gp~~~d~~~g 140 (306) T 1sdd_A 61 TLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCL 140 (306) T ss_dssp CEEEETTCEEEEEEEECSSSCBCCEEESSCCCTTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSSSCSEE T ss_pred EEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC T ss_conf 69998698999999989899834223345357534687555788886644555998995899998456457765788840 Q ss_pred EEEEECCCCCC--CCCCCCEEEEEECCHH Q ss_conf 89666133265--7611365899970889 Q gi|254780474|r 217 AYSGFSANYSG--RGFSHMRFKFYGKSEK 243 (332) Q Consensus 217 ~y~G~cae~cG--~ghs~M~f~v~v~s~~ 243 (332) +|.-.|.- .. ...+.|..-+++..+. T Consensus 141 t~~Yhsh~-~~~~~~~~GL~G~liV~~~~ 168 (306) T 1sdd_A 141 THIYYSYV-NLVEDFNSGLIGPLLICKKG 168 (306) T ss_dssp EEEEECCS-SSHHHHHTTCCEEEEEECTT T ss_pred EEEEECCC-CHHHHHHCCCEEEEEECCCC T ss_conf 68751136-62776414545789986877 No 59 >1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A* Probab=38.31 E-value=16 Score=14.86 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=12.2 Q ss_pred EEEEECCCEEEEEEEECCCCHH Q ss_conf 6896369828999983581011 Q gi|254780474|r 167 ELVVPIDRPLEFRITASSVMNS 188 (332) Q Consensus 167 eL~lPv~~pV~f~ltS~DViHS 188 (332) .+.+..|+.++|+|-......+ T Consensus 186 ~i~v~~G~~~RlRliNa~~~~~ 207 (503) T 1hfu_A 186 IVNVEQGKKYRMRLISLSCDPN 207 (503) T ss_dssp EEEECTTCEEEEEEEECCSSCC T ss_pred EEEECCCCEEEECCCCCCCCCC T ss_conf 9998899689971246778852 No 60 >2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Probab=36.95 E-value=16 Score=14.83 Aligned_cols=27 Identities=7% Similarity=0.260 Sum_probs=20.9 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCCCC Q ss_conf 589997088999999999860724569 Q gi|254780474|r 234 RFKFYGKSEKGFEDWISKVKRQGTFLN 260 (332) Q Consensus 234 ~f~v~v~s~~~f~~Wv~~~ka~~~~l~ 260 (332) .|...+.+++|.+.|++..+.....++ T Consensus 96 ~~~l~A~s~ee~~~Wi~ai~~a~~~~~ 122 (124) T 2w2x_D 96 PVEFATDKVEELFEWFQSIREITWKID 122 (124) T ss_dssp CEEEEECCCHHHHHHHHHHHHHHC--- T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHH T ss_conf 899987999999999999999997644 No 61 >2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Probab=34.69 E-value=18 Score=14.48 Aligned_cols=13 Identities=8% Similarity=-0.128 Sum_probs=5.6 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8899999999986 Q gi|254780474|r 241 SEKGFEDWISKVK 253 (332) Q Consensus 241 s~~~f~~Wv~~~k 253 (332) +.++-.++.++.+ T Consensus 691 d~~~L~~~a~~l~ 703 (1052) T 2v50_A 691 GHEVLLQARNKFL 703 (1052) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 8999999999999 No 62 >1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Probab=33.62 E-value=19 Score=14.36 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=28.9 Q ss_pred EEEEECCCEEEEEEEECCCCHHCCC--HHHCCE----------------ECCCCCCCEEEEEEECC Q ss_conf 6896369828999983581011022--010740----------------31169851489999427 Q gi|254780474|r 167 ELVVPIDRPLEFRITASSVMNSFYI--PGLAGQ----------------IYAMAGMETKLHAVMNK 214 (332) Q Consensus 167 eL~lPv~~pV~f~ltS~DViHSF~I--P~l~~k----------------~daiPG~~t~l~~~a~~ 214 (332) .+.+..|+.++|++.+.+..++|.+ +..... +...||.+..+-+.+++ T Consensus 205 ~~~v~~g~~~RlR~ina~~~~~~~~~i~~~~~~via~DG~~~~P~~~d~l~i~pgeR~dVlV~~~~ 270 (552) T 1aoz_A 205 IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQ 270 (552) T ss_dssp CEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCS T ss_pred EEEECCCCEEEEEEECCCCCCHHHHHHCCCEEEEEECCCEECCCCEEEEEEECCCCCEEEEEECCC T ss_conf 388679977999873365551011230585158992398554640511686037752799996578 No 63 >3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503} Probab=30.95 E-value=8.7 Score=16.78 Aligned_cols=11 Identities=0% Similarity=0.126 Sum_probs=7.3 Q ss_pred CHHHHHHHHHH Q ss_conf 88999999999 Q gi|254780474|r 241 SEKGFEDWISK 251 (332) Q Consensus 241 s~~~f~~Wv~~ 251 (332) .|+.+|.|+.+ T Consensus 275 DP~~Wd~wLye 285 (393) T 3gyc_A 275 RPGYWQKLLTD 285 (393) T ss_dssp CHHHHHHHHHH T ss_pred CHHHHHHHHHH T ss_conf 88999999999 No 64 >1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Probab=30.86 E-value=21 Score=14.05 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=7.3 Q ss_pred EEEECCHHHHHHHHH Q ss_conf 999708899999999 Q gi|254780474|r 236 KFYGKSEKGFEDWIS 250 (332) Q Consensus 236 ~v~v~s~~~f~~Wv~ 250 (332) .|.-+++++-|++-. T Consensus 145 ~~~kl~~e~sd~yf~ 159 (261) T 1nrg_A 145 PVKKLPEEEAECYFH 159 (261) T ss_dssp EEEECCHHHHHHHHH T ss_pred EEEECCCHHHHHHHH T ss_conf 999837277788875 No 65 >2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae} Probab=30.38 E-value=8.7 Score=16.77 Aligned_cols=17 Identities=6% Similarity=-0.222 Sum_probs=7.2 Q ss_pred ECCCCCCCCCCCCEEEEEEC Q ss_conf 61332657611365899970 Q gi|254780474|r 221 FSANYSGRGFSHMRFKFYGK 240 (332) Q Consensus 221 ~cae~cG~ghs~M~f~v~v~ 240 (332) -|..| |...=|+-|++. T Consensus 174 TC~P~---g~~~~RliV~a~ 190 (252) T 2w1k_A 174 TCDPI---PTFNKRLLVNFE 190 (252) T ss_dssp EEEST---TTCCEEEEEEEE T ss_pred ECCCC---CCCCEEEEEEEE T ss_conf 74799---989718999999 No 66 >1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Probab=29.04 E-value=23 Score=13.84 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=20.7 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCCC Q ss_conf 58999708899999999986072456 Q gi|254780474|r 234 RFKFYGKSEKGFEDWISKVKRQGTFL 259 (332) Q Consensus 234 ~f~v~v~s~~~f~~Wv~~~ka~~~~l 259 (332) .|...+.+++|+++|++..+.....+ T Consensus 97 ~~~l~a~s~~e~~~Wv~aL~~a~k~~ 122 (126) T 1v5p_A 97 RYFLQANDQKDLKDWVEALNQASKSG 122 (126) T ss_dssp EEEEECSSHHHHHHHHHHHHHTTTTS T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 69997899999999999999984339 No 67 >2kcj_A Pleckstrin homology domain-containing family A member 3; FAPP1, PH domain, cytoplasm, lipid-binding, membrane, membrane protein; NMR {Homo sapiens} Probab=27.55 E-value=24 Score=13.66 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=19.4 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCC Q ss_conf 5899970889999999998607245 Q gi|254780474|r 234 RFKFYGKSEKGFEDWISKVKRQGTF 258 (332) Q Consensus 234 ~f~v~v~s~~~f~~Wv~~~ka~~~~ 258 (332) .+.+.+.+++|.++|++..+++-.. T Consensus 78 ~~~l~a~s~~e~~~Wi~ai~~a~~~ 102 (108) T 2kcj_A 78 HFYMKAVNAAERQRWLVALGSSKAS 102 (108) T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTT T ss_pred EEEEECCCHHHHHHHHHHHHHHHHH T ss_conf 9999779999999999999999976 No 68 >2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Probab=27.34 E-value=24 Score=13.64 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=33.0 Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHHCCCCEEECCCCCCHHHHH Q ss_conf 0889999999998607245698999997---61021263217204783542687 Q gi|254780474|r 240 KSEKGFEDWISKVKRQGTFLNRQEYLLL---KKPSERDSVRYFSPIEKGLYYSI 290 (332) Q Consensus 240 ~s~~~f~~Wv~~~ka~~~~l~~~~y~~l---~~ps~~~~~~~f~~~~~~lf~~i 290 (332) ||+++|+.=++.++..+..++.+...+| .++....++ ..-.|+.|+-. T Consensus 1 mse~~F~~A~~~v~~l~~~~s~~~~L~lY~LyKQAt~Gd~---~~~~P~~~~~~ 51 (87) T 2cb8_A 1 MSQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDI---NTERPGMLDFT 51 (87) T ss_dssp -CHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSC---CSCCCCTTCHH T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCCCCHH T ss_conf 9899999999999857799598999999999998612898---88999845599 No 69 >2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A Probab=27.20 E-value=24 Score=13.62 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999988530 Q gi|254780474|r 51 RIAVALMLLIVVPVFFSILFFAWKYR 76 (332) Q Consensus 51 ~~~~~l~liV~v~V~~l~~~~~~kyR 76 (332) ++...++.+..+.+++++.|.+||-. T Consensus 10 ~WiIivsv~~Gll~L~ll~~~lwKcG 35 (42) T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVG 35 (42) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 41479999999999999999999827 No 70 >1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii} Probab=26.69 E-value=25 Score=13.56 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHCCC Q ss_conf 99999998853046 Q gi|254780474|r 65 FFSILFFAWKYRST 78 (332) Q Consensus 65 ~~l~~~~~~kyR~~ 78 (332) +++++|..||.|++ T Consensus 32 igLT~YA~~r~~~~ 45 (46) T 1waz_A 32 IGLTIYAIQRKRQA 45 (46) T ss_dssp HHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999998706 No 71 >2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 Probab=26.43 E-value=25 Score=13.53 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=44.0 Q ss_pred EECCCEEEEEEEECCCC-HHCCC----H---HHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC Q ss_conf 63698289999835810-11022----0---1074031169851489999427748966613326576113658999708 Q gi|254780474|r 170 VPIDRPLEFRITASSVM-NSFYI----P---GLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241 (332) Q Consensus 170 lPv~~pV~f~ltS~DVi-HSF~I----P---~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s 241 (332) +++|+|..|.+.+.|.= ..+-+ | ..-.++.-...-+-...+++.++|.|.. .-.|.|.-=..=+|++.+.+ T Consensus 25 ~~~g~~~~F~V~~~~aG~g~l~v~v~~p~g~~v~~~v~d~~dG~y~v~ytp~~~G~~~v-~V~~~g~~I~gSPf~v~v~~ 103 (124) T 2dmb_A 25 VKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVI-YVRFGGVDIPNSPFTVMATD 103 (124) T ss_dssp EESSSEEEEEEECSSSCSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEE-EEEESSCBCTTCSEEEEEEC T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCCEEEEE-EEEECCEECCCCCEEEEEEC T ss_conf 01898699999959888995199999799988854999899998999998388782899-99999999999899999988 Q ss_pred H Q ss_conf 8 Q gi|254780474|r 242 E 242 (332) Q Consensus 242 ~ 242 (332) + T Consensus 104 ~ 104 (124) T 2dmb_A 104 G 104 (124) T ss_dssp C T ss_pred C T ss_conf 9 No 72 >2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A Probab=25.47 E-value=26 Score=13.41 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=13.6 Q ss_pred ECCCCCCCEEEEEEECCCEEE Q ss_conf 311698514899994277489 Q gi|254780474|r 198 IYAMAGMETKLHAVMNKKGAY 218 (332) Q Consensus 198 ~daiPG~~t~l~~~a~~~G~y 218 (332) +...||.+..+-+.+++++.+ T Consensus 328 l~l~pGeRydvlV~~~~~~~~ 348 (612) T 2g23_A 328 LSAAPAERFDLLVDFRALGGR 348 (612) T ss_dssp EEECTTCEEEEEEECTTCTTC T ss_pred EEECCCCEEEEEEEECCCCCE T ss_conf 997056258999970589976 No 73 >1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Probab=25.14 E-value=26 Score=13.37 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=19.6 Q ss_pred CEEEEEECCHHHHHHHHHHHHCCC Q ss_conf 658999708899999999986072 Q gi|254780474|r 233 MRFKFYGKSEKGFEDWISKVKRQG 256 (332) Q Consensus 233 M~f~v~v~s~~~f~~Wv~~~ka~~ 256 (332) ..+...+.+++|+++|++..+... T Consensus 95 ~~~~f~a~s~~e~~~W~~al~~a~ 118 (122) T 1dro_A 95 ALFLLQAHDDTEMSQWVTSLKAQS 118 (122) T ss_dssp CEEEEECSSSHHHHHHHHHHHHHH T ss_pred CEEEEECCCHHHHHHHHHHHHHHH T ss_conf 599998799999999999999999 No 74 >2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* Probab=25.09 E-value=26 Score=13.36 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=34.5 Q ss_pred EEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEE-CCCEEEEEECCCCCCCCCC----CCEEEEE-----ECCHHHH Q ss_conf 8999983581011022010740311698514899994-2774896661332657611----3658999-----7088999 Q gi|254780474|r 176 LEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVM-NKKGAYSGFSANYSGRGFS----HMRFKFY-----GKSEKGF 245 (332) Q Consensus 176 V~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a-~~~G~y~G~cae~cG~ghs----~M~f~v~-----v~s~~~f 245 (332) .+..|.=++|-|+.|=.+ .+ .|+|.+.. ..+|++-...+.--|.++. .|.|... +..++.| T Consensus 341 teI~i~Fk~~~~~~f~~~-------~~--~n~lv~~iqP~e~i~l~~~~k~pg~~~~~~~~~l~~~~~~~~~~~~~~daY 411 (489) T 2bh9_A 341 AEVRLQFHDVAGDIFHQQ-------CK--RNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYKNVKLPDAY 411 (489) T ss_dssp EEEEEEECCCSSCCSTTC-------CC--CCEEEEEEESSCEEEEEEEEECTTTCCSEEEEEEEEETTTSSSSSCCCCHH T ss_pred EEEEEEECCCCCCCCCCC-------CC--CCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCCCHH T ss_conf 799999757885301357-------78--886999846975341211023898887325665036142025899888719 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99999986072456 Q gi|254780474|r 246 EDWISKVKRQGTFL 259 (332) Q Consensus 246 ~~Wv~~~ka~~~~l 259 (332) +.=+..+=.+.+++ T Consensus 412 e~Ll~d~~~Gd~tl 425 (489) T 2bh9_A 412 ERLILDVFCGSQMH 425 (489) T ss_dssp HHHHHHHHHTCCTT T ss_pred HHHHHHHHCCCCCC T ss_conf 99999997799656 No 75 >3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A Probab=24.21 E-value=26 Score=13.39 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 9999999998607245698999997 Q gi|254780474|r 243 KGFEDWISKVKRQGTFLNRQEYLLL 267 (332) Q Consensus 243 ~~f~~Wv~~~ka~~~~l~~~~y~~l 267 (332) ++|-+.=++..+....+..+.|.+. T Consensus 20 E~Ylrl~aKL~~AK~~mg~~Eyeef 44 (158) T 3fh3_A 20 EAYMRFSAKLSEAKDEMGTKEYEVF 44 (158) T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999799899887755328899999 No 76 >2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3 Probab=22.48 E-value=29 Score=13.02 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=21.5 Q ss_pred ECCHHHHHHHHHHHHCCC-CCCC---HHHHHHHHH Q ss_conf 708899999999986072-4569---899999761 Q gi|254780474|r 239 GKSEKGFEDWISKVKRQG-TFLN---RQEYLLLKK 269 (332) Q Consensus 239 v~s~~~f~~Wv~~~ka~~-~~l~---~~~y~~l~~ 269 (332) .+|+++|..|.+.....+ +.|- .+.|.+|.+ T Consensus 61 ~LS~eEf~~W~~a~~~hGe~aLRatr~q~yRql~E 95 (101) T 2oa4_A 61 GLSDEEFNSWVSALAEHGKDALKVTALKKYRQLLE 95 (101) T ss_dssp CSSHHHHHHHHHHHHCCCSSSSCCHHHHHHHHTTS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998499998827899999987 No 77 >2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2 Probab=21.81 E-value=18 Score=14.49 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=42.7 Q ss_pred CEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC---HHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 1489999427748966613326576113658999708---89999999998607245698999 Q gi|254780474|r 205 ETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS---EKGFEDWISKVKRQGTFLNRQEY 264 (332) Q Consensus 205 ~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s---~~~f~~Wv~~~ka~~~~l~~~~y 264 (332) .+.++|..+|.-.|.|.++ ||-..+.--...+.+.+ .+++-.|++--...|.++.+... T Consensus 77 ~~~t~F~lnKQAAf~GkVs-f~~~~~g~i~v~I~~~~~~~i~~iidwlaP~T~~G~pv~e~~~ 138 (147) T 2pzz_A 77 ENATKFYLNKQAAYVGAVN-FDIDTHGGIFVKILADENEDIMKIIKDIAPRTKGGVIINEDEL 138 (147) T ss_dssp SSEEEEEECHHHHHTTCCC-CSCCTTCCEEEEEECCTTSCHHHHHHHHSCCBSSSCBCC---- T ss_pred CCEEEEEEECHHHHCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEECCCCCC T ss_conf 9989999850586587302-3448999825999964786999999873798879809897887 No 78 >2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} Probab=21.36 E-value=31 Score=12.87 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 999999988530467 Q gi|254780474|r 65 FFSILFFAWKYRSTN 79 (332) Q Consensus 65 ~~l~~~~~~kyR~~~ 79 (332) +++++|..||.|+++ T Consensus 44 i~lt~Ya~~r~~~~~ 58 (61) T 2h3o_A 44 IGLTIYAIQRKRQAD 58 (61) T ss_dssp HHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999996033 No 79 >1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A* Probab=20.65 E-value=26 Score=13.35 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=24.5 Q ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCCCC--CCCHHHHHHHH Q ss_conf 761136589997088999999999860724--56989999976 Q gi|254780474|r 228 RGFSHMRFKFYGKSEKGFEDWISKVKRQGT--FLNRQEYLLLK 268 (332) Q Consensus 228 ~ghs~M~f~v~v~s~~~f~~Wv~~~ka~~~--~l~~~~y~~l~ 268 (332) ..|.+|.+. .++++||+|+...+++=. .++.+.-+++. T Consensus 109 ~~H~~l~~~---It~~~fd~~l~~l~~al~e~gv~~~~~~ei~ 148 (164) T 1dly_A 109 TAHKDLVPH---LSDVHFQAVARHLSDTLTELGVPPEDITDAM 148 (164) T ss_dssp HHHTTCSSC---CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH T ss_pred HHHHCCCCC---CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 997635579---8999999999999999998399999999999 Done!