HHSEARCH alignment of GI: 254780474 and SCOP domain: d3dtub2

Alignment
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=99.48  E-value=6.3e-14  Score=115.62  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=79.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHH
Q ss_conf             43268989899999999999999999999999999999988530467777778753456612553022789999999999
Q gi|254780474|r   33 FIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVI  112 (332)
Q Consensus        33 ~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~  112 (332)
                      ....||+|++|+++.+|+...++++.+|++.|.++++|+++|||+++++  .+.+.+||++||++||++|++|+++++++
T Consensus        12 l~fqd~as~~a~~i~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~--~~~~~~~n~~LEiiWTviP~lILi~l~~p   89 (100)
T d3dtub2          12 TGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNK--VPARFTHNSPLEIAWTIVPIVILVAIGAF   89 (100)
T ss_dssp             CSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTTCC--SCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             6898989989999999999999999999999999999996231135998--87524475468999999999999999999


Q ss_pred             HHHHHHHHC
Q ss_conf             998877513
Q gi|254780474|r  113 TWDATHRMD  121 (332)
Q Consensus       113 t~~~~~~ld  121 (332)
                      +++..+.+|
T Consensus        90 S~~~ly~md   98 (100)
T d3dtub2          90 SLPVLFNQQ   98 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
T ss_conf             999999771


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Cytochrome c oxidase subunit II-like, transmembrane region
family: Cytochrome c oxidase subunit II-like, transmembrane region
domain: Bacterial aa3 type cytochrome c oxidase subunit II
species: Rhodobacter sphaeroides [TaxId: 1063]