HHSEARCH alignment of GI: 254780474 and SCOP domain: d3ehbb2

Alignment

Probab=99.42  E-value=3.5e-13  Score=110.26  Aligned_cols=87  Identities=15%  Similarity=0.226  Sum_probs=78.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHH
Q ss_conf             43268989899999999999999999999999999999988530467777778753456612553022789999999999
Q gi|254780474|r   33 FIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVI  112 (332)
Q Consensus        33 ~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~~  112 (332)
                      ....+|++++|+++.+++...++++.+|++.|.++++|+.+|||++++  ..+.+++||+++|++||++|++|+++|+++
T Consensus        18 l~fqd~~Sp~ae~i~~lh~~v~~i~~~I~~~V~~~~~~~~~~~r~~~~--~~~~~~~~n~~lEi~WTviP~lIL~~laip   95 (107)
T d3ehbb2          18 MNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRAN--PVPARFTHNTPIEVIWTLVPVLILVAIGAF   95 (107)
T ss_dssp             CSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTS--SSCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             389797898999999999888999999999999987787202004378--543311143178999999999999999999


Q ss_pred             HHHHHHHHC
Q ss_conf             998877513
Q gi|254780474|r  113 TWDATHRMD  121 (332)
Q Consensus       113 t~~~~~~ld  121 (332)
                      +.+..+.+|
T Consensus        96 Sl~~Ly~md  104 (107)
T d3ehbb2          96 SLPILFRSQ  104 (107)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
T ss_conf             999999703

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Cytochrome c oxidase subunit II-like, transmembrane region
family: Cytochrome c oxidase subunit II-like, transmembrane region
domain: Bacterial aa3 type cytochrome c oxidase subunit II
species: Paracoccus denitrificans [TaxId: 266]