PSIBLAST alignment of GI: 254780474 and protein with PDB id: 1ar1

gi|2914142|pdb|1AR1|B Chain B, Structure At 2.7 Angstrom Resolution Of The Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed With An Antibody Fv Fragment Length = 298
>gi|208435763|pdb|3EHB|B Chain B, A D-Pathway Mutation Decouples The Paracoccus Denitrificans Cytochrome C Oxidase By Altering The Side Chain Orientation Of A Distant, Conserved Glutamate Length = 298

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 96/257 (37%), Gaps = 40/257 (15%)

Query: 33  FIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHST 92
                    +A  Q  L    + ++  + + V   +L    ++           ++ H+T
Sbjct: 47  MNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRR--ANPVPARFTHNT 104

Query: 93  LLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWK 152
            +E+   LVP++I+  +   +     R                  N   LV++ +   W 
Sbjct: 105 PIEVIWTLVPVLILVAIGAFSLPILFR-------------SQEMPNDPDLVIKAIGHQWY 151

Query: 153 WLFLLPEQQVAII----------------NELVVPID--------RPLEFRITASSVMNS 188
           W +  P   VA                  +E ++  D        + +  ++TA+ V+++
Sbjct: 152 WSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVGKKVLVQVTATDVIHA 211

Query: 189 FYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDW 248
           + IP  A +  A+ G   +L   ++++G Y G  +   G   ++M       S++ +E W
Sbjct: 212 WTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAW 271

Query: 249 ISKVKRQGTFLNRQEYL 265
           ++  K +    +  +YL
Sbjct: 272 LAGAKEEFAA-DASDYL 287