RPSBLAST alignment of GI: 254780474 and protein with PDBid: 1cyx

 Score =  165 bits (419), Expect = 1e-41
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 11/206 (5%)

Query: 117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPL 176
           TH ++P  PL           + KP+ +EVV++DWKW F+ PEQ +A +NE+  P + P+
Sbjct: 1   THALEPSKPLAH---------DEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPV 51

Query: 177 EFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
            F++T++SVM+SF+IP L  QIYAMAGM+T+LH + N+ G Y G  A   G G S M+FK
Sbjct: 52  YFKVTSNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFK 111

Query: 237 FYG-KSEKGFEDWISKVKRQG-TFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLC 294
                    F+ W++K K+   T  +   +  L  PSE + V YFS ++  L+  ++N  
Sbjct: 112 AIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKF 171

Query: 295 VHPGKICMDEMMRIDALGGGGMRGID 320
           +  GK         +     GM G+D
Sbjct: 172 MAHGKSMDMTQPEGEHSAHEGMEGMD 197