RPSBLAST alignment of GI: 254780474 and protein with PDBid: 1fft

>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Length = 315

 Score =  296 bits (759), Expect = 5e-81
 Identities = 132/309 (42%), Positives = 189/309 (61%), Gaps = 11/309 (3%)

Query: 14  KSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAW 73
           KSL +  LF  +V+LSG    ++DP G I L+Q SLI  A  LML++V+P     + FAW
Sbjct: 8   KSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67

Query: 74  KYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESK 133
           KYR++NK A+Y P W HS  +E  VW VP++I+ FLAV+TW  TH ++P  PL       
Sbjct: 68  KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL------- 120

Query: 134 SIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPG 193
             A + KP+ +EVV++DWKW F+ PEQ +A +NE+  P + P+ F++T++SVMNSF+IP 
Sbjct: 121 --AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPR 178

Query: 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKV 252
           L  QIYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK         F+ W++K 
Sbjct: 179 LGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKA 238

Query: 253 KRQG-TFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDAL 311
           K+   T  +   +  L  PSE + V YFS ++  L+  ++N  +  GK         +  
Sbjct: 239 KQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHS 298

Query: 312 GGGGMRGID 320
              GM G+D
Sbjct: 299 AHEGMEGMD 307