RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II
[Candidatus Liberibacter asiaticus str. psy62]
(332 letters)
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli
[TaxId: 562]}
Length = 158
Score = 130 bits (328), Expect = 1e-31
Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 140 KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIY 199
KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+ F++T++SVM+SF+IP L QIY
Sbjct: 1 KPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGSQIY 60
Query: 200 AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG-KSEKGFEDWISKVKRQG-T 257
AMAGM+T+LH + N+ G Y G A G G S M+FK F+ W++K K+ T
Sbjct: 61 AMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNT 120
Query: 258 FLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILN 292
+ + L PSE + V YFS ++ L+ ++N
Sbjct: 121 MSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVIN 155
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
II {Escherichia coli [TaxId: 562]}
Length = 91
Score = 102 bits (257), Expect = 3e-23
Identities = 44/88 (50%), Positives = 61/88 (69%)
Query: 35 VMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLL 94
++DP G I L+Q SLI A LML++V+P + FAWKYR++NK A+Y P W HS +
Sbjct: 3 LLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKV 62
Query: 95 ELFVWLVPLVIVGFLAVITWDATHRMDP 122
E VW VP++I+ FLAV+TW TH ++P
Sbjct: 63 EAVVWTVPILIIIFLAVLTWKTTHALEP 90
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 152
Score = 84.3 bits (208), Expect = 1e-17
Identities = 17/86 (19%), Positives = 42/86 (48%)
Query: 166 NELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANY 225
+VVP+++ + ++T + V++S+ +P + A+ G +L ++G + G +
Sbjct: 67 TAMVVPVNKTVVVQVTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSEL 126
Query: 226 SGRGFSHMRFKFYGKSEKGFEDWISK 251
G ++M SE+ + W+ +
Sbjct: 127 CGISHAYMPITVKVVSEEAYAAWLEQ 152
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus
denitrificans [TaxId: 266]}
Length = 145
Score = 83.2 bits (205), Expect = 3e-17
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 138 NSKPLVVEVVALDWKWLFLLPEQQV------------------------AIINELVVPID 173
N LV++ + W W + P V A N +VVP+
Sbjct: 1 NDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVG 60
Query: 174 RPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233
+ + ++TA+ V++++ IP A + A+ G +L ++++G Y G + G ++M
Sbjct: 61 KKVLVQVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYM 120
Query: 234 RFKFYGKSEKGFEDWISKVK 253
S++ +E W++ K
Sbjct: 121 PIVVKAVSQEKYEAWLAGAK 140
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus)
[TaxId: 9913]}
Length = 137
Score = 80.1 bits (197), Expect = 2e-16
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 138 NSKPLVVEVVALDWKWLFLLPEQQVAII---------------------NELVVPIDRPL 176
N+ L V+ + W W + + + N +V+P++ +
Sbjct: 1 NNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTI 60
Query: 177 EFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
+++ V++S+ +P L + A+ G + + ++ G Y G + G S M
Sbjct: 61 RMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIV 120
Query: 237 FYGKSEKGFEDWISK 251
K FE W +
Sbjct: 121 LELVPLKYFEKWSAS 135
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus,
ba3 type [TaxId: 274]}
Length = 122
Score = 72.4 bits (177), Expect = 5e-14
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 10/120 (8%)
Query: 119 RMDPYAPLER--ISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPL 176
R+DP + ++ + P V L + + + N + VP +
Sbjct: 6 RVDPTTVRQEGPWADPAQAVVQTGPNQYTVYVLAFAFGYQP--------NPIEVPQGAEI 57
Query: 177 EFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFK 236
F+IT+ V++ F++ G + + G + + + G Y Y G G +M
Sbjct: 58 VFKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT 117
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase
subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 100
Score = 35.2 bits (81), Expect = 0.007
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 37 DPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLEL 96
+A Q L + ++ I + V IL+ W++ K+ + ++ H++ LE+
Sbjct: 16 PSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHE--KRNKVPARFTHNSPLEI 73
Query: 97 FVWLVPLVIVGFLAVITWDATHRMD 121
+VP+VI+ + +
Sbjct: 74 AWTIVPIVILVAIGAFSLPVLFNQQ 98
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase
subunit II {Paracoccus denitrificans [TaxId: 266]}
Length = 107
Score = 34.5 bits (79), Expect = 0.012
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 37 DPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLEL 96
+A Q L + ++ + + V +L ++ + ++ H+T +E+
Sbjct: 22 PASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNR--RANPVPARFTHNTPIEV 79
Query: 97 FVWLVPLVIVGFLAVITWDATHRMD 121
LVP++I+ + + R
Sbjct: 80 IWTLVPVLILVAIGAFSLPILFRSQ 104
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
protein MalF {Escherichia coli [TaxId: 562]}
Length = 248
Score = 29.8 bits (67), Expect = 0.32
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 42 IALQQAS-LIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWL 100
+ Q L I ++ + +F + +AW+Y + LFV L
Sbjct: 21 LMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPG-----------MAGMGLFV-L 68
Query: 101 VPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQ 160
PLV +A + +T+++ E + + A + + +W+ E
Sbjct: 69 FPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGET 128
Query: 161 QVAIINELVVPID 173
+++
Sbjct: 129 GKNYLSDAFKFGG 141
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
cardiophyllum) [TaxId: 160510]}
Length = 360
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 302 MDEMMRIDALGGGGMRGI 319
+ EM+ + ++ GGG+RGI
Sbjct: 1 LGEMVTVLSIDGGGIRGI 18
>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 160
Score = 27.1 bits (59), Expect = 2.3
Identities = 6/76 (7%), Positives = 19/76 (25%)
Query: 182 ASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS 241
+ +M +AG + +A + + + K + + +
Sbjct: 3 VTPIMTELDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEILLQKRE 62
Query: 242 EKGFEDWISKVKRQGT 257
+ K+
Sbjct: 63 NDKCAQEVLLAKKTDI 78
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 26.9 bits (59), Expect = 2.5
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 39 YGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTL 93
D +I + A+++ + + ++ + + R N+ DP W TL
Sbjct: 435 QIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDP-WGGRTL 488
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Length = 158
Score = 26.5 bits (57), Expect = 3.5
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 92 TLLELFVWLVPLVIVGFLAVI 112
TL+EL ++ + IVG LA +
Sbjct: 2 TLIEL---MIVIAIVGILAAV 19
>d2axto1 f.4.1.4 (O:30-271) Manganese-stabilising protein, PsbO
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 242
Score = 25.6 bits (56), Expect = 6.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 270 PSERDSVRYFSPIEKGLYYSILNLCVHP 297
P+ D+ R PI+ Y I LC+ P
Sbjct: 17 PTLDDTARGAYPIDSSQTYRIARLCLQP 44
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 24.9 bits (53), Expect = 8.9
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 122 PYAPLERIS----ESKSIAKNSKPLVVEVVALDW---KW 153
P P+ R+S ++ + +N +P+V+ L + KW
Sbjct: 24 PTRPIPRLSQSDPRAEELIENEEPVVLTDTNLVYPALKW 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.437
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,306,522
Number of extensions: 60949
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 25
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)