HHsearch alignment of GI: 254780475 and MMDB domain: 1nkw_1_

>1nkw_1 (1:) 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}

Probab=99.89  E-value=1.4e-23  Score=143.54  Aligned_cols=54  Identities=46%  Similarity=0.730  Sum_probs=51.4

Q ss_pred             CCC--CCEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf             987--762699999517788759835488998333699413174463446688650
Q gi|254780475|r    1 MAK--AATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI   54 (55)
Q Consensus         1 MaK--~~r~~I~L~st~~tg~~Y~T~knk~~~~~klel~Ky~p~~~kHvl~~E~Ki   54 (55)
                      ||+  ++|++|+|+|+||+++||+|+||++++||||||+||||+||+||+|+|+||
T Consensus        27 Mak~K~~R~~I~L~ct~c~~~nY~T~KNrk~~pekLeLkKYcP~~rkhtlhkE~Ki   82 (82)
T 1nkw_1           27 IMAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV   82 (82)
T ss_pred             HHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEEC
T ss_conf             10367882799999847889889764678899302378635876553352775109