HHsearch alignment of GI: 254780475 and MMDB domain: 3i1n_1_

>3i1n_1 (1:) 50S ribosomal protein L33; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1 2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1* 2qbc_1* 2qbe_1 2qbg_1 ...
Probab=99.91  E-value=1.7e-25  Score=153.54  Aligned_cols=55  Identities=60%  Similarity=0.860  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf             9877626999995177887598354889983336994131744634466886509
Q gi|254780475|r    1 MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKIK   55 (55)
Q Consensus         1 MaK~~r~~I~L~st~~tg~~Y~T~knk~~~~~klel~Ky~p~~~kHvl~~E~KiK   55 (55)
                      |||+.|++|+|+|++|+++||+|+||++++||||||+||||+|++||+|+|+|||
T Consensus         1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~~rLel~Kycp~~~khtlhkE~Kik   55 (55)
T 3i1n_1            1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK   55 (55)
T ss_dssp             ---CCCBCCCEEESSSSCCEECCCBCSSSCCSCCCEEEEETTTTEEEEEECCC--
T ss_pred             CCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHEEEECCCCCCCCEEEEEEEECC
T ss_conf             9976551699998288881797647888994144897418787856608876529