RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780475|ref|YP_003064888.1| 50S ribosomal protein L33
[Candidatus Liberibacter asiaticus str. psy62]
(55 letters)
>gnl|CDD|144167 pfam00471, Ribosomal_L33, Ribosomal protein L33.
Length = 48
Score = 56.7 bits (138), Expect = 1e-09
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 6 TIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
+KI L + G Y T KN R ++ KY P RKH KE K
Sbjct: 1 RVKITLECTECGGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 48
>gnl|CDD|30616 COG0267, RpmG, Ribosomal protein L33 [Translation, ribosomal
structure and biogenesis].
Length = 50
Score = 47.5 bits (113), Expect = 7e-07
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 7 IKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
+KIKL +A T Y T KN R ++ KY PV RKH KE K
Sbjct: 4 VKIKLACTACTSRNYTTTKNKRNKPERLELKKYCPVCRKHTLHKETK 50
>gnl|CDD|38715 KOG3505, KOG3505, KOG3505, Mitochondrial/chloroplast ribosomal
protein L33-like [Translation, ribosomal structure and
biogenesis].
Length = 55
Score = 36.9 bits (85), Expect = 0.001
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 3 KAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKIK 55
K + I+L+S+AGTG FYV + ++ K+ KYDPV+++HV F E K+K
Sbjct: 5 KKKNMLIRLVSTAGTGFFYVKSRKK--LAEKLTFRKYDPVVKRHVLFTEQKMK 55
>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
related proteins [Lipid transport and metabolism].
Length = 2376
Score = 25.7 bits (56), Expect = 2.7
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 1 MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKM 34
+ K +K+++ G+G+F + + S +SGK+
Sbjct: 929 LPKTGVVKLEVNLFPGSGAFEICENGSLVVSGKI 962
>gnl|CDD|177033 CHL00104, rpl33, ribosomal protein L33.
Length = 66
Score = 24.9 bits (55), Expect = 4.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 19 SFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53
S Y+T+KN ++ K+ P KH KE K
Sbjct: 31 SRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
>gnl|CDD|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated
Protein (TRRAP), pseudokinase domain; The TRRAP
catalytic domain is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. TRRAP shows some similarity to
members of the phosphoinositide 3-kinase-related protein
kinase (PIKK) subfamily in that it contains a FATC
(FRAP, ATM and TRRAP, C-terminal) domain and has a large
molecular weight. Unlike PIKK proteins, however, it
contains an inactive PI3K-like pseudokinase domain,
which lacks the conserved residues necessary for ATP
binding and catalytic activity. TRRAP also contains many
motifs that may be critical for protein-protein
interactions. TRRAP is a common component of many
histone acetyltransferase (HAT) complexes, and is
responsible for the recruitment of these complexes to
chromatin during transcription, replication, and DNA
repair. TRRAP also exists in non-HAT complexes such as
the p400 and MRN complexes, which are implicated in
ATP-dependent remodeling and DNA repair, respectively..
Length = 253
Score = 24.9 bits (55), Expect = 5.5
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 10 KLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPV 42
K+ S TG+ Y + + K + + +PV
Sbjct: 165 KIFISRDTGNVYQSDLLPSINNNKPLFHNNEPV 197
>gnl|CDD|143493 cd06819, PLPDE_III_LS_D-TA, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Low Specificity D-Threonine
Aldolase. Low specificity D-threonine aldolase (Low
specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene
from Arthrobacter sp. strain DK-38, is the prototype of
this subfamily. Low specificity D-TAs are fold type III
PLP-dependent enzymes that catalyze the interconversion
between D-threonine/D-allo-threonine and glycine plus
acetaldehyde. Both PLP and divalent cations (eg. Mn2+)
are required for catalytic activity. Members of this
subfamily show similarity to bacterial alanine racemase
(AR), which contains an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain.
AR exists as homodimers with active sites that lie at
the interface between the TIM barrel domain of one
subunit and the beta-sandwich domain of the other
subunit. Based on its similarity to AR, it is possible
that low specificity D-TAs also form dimers in solution.
Experimental data show that the monomeric form of low
specificity D-TAs exhibit full catalytic activity.
Length = 358
Score = 24.1 bits (53), Expect = 8.6
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 3 KAATIKIKLISSAGTGSFYVT 23
+AA + ++++ GTG++
Sbjct: 200 EAAGLPCEIVTGGGTGTYEFE 220
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.314 0.127 0.338
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 562,432
Number of extensions: 18856
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 10
Length of query: 55
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 27
Effective length of database: 5,658,685
Effective search space: 152784495
Effective search space used: 152784495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.0 bits)