HHsearch alignment for GI: 254780476 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.22 E-value=1.7e-11 Score=86.80 Aligned_cols=92 Identities=24% Similarity=0.432 Sum_probs=83.3
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 89899998897999999982799899995041296959999999828576899599999249989999999769988998
Q gi|254780476|r 25 SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 25 ~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
T Consensus 11 ~~~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~~----~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 11 EYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCCCC----EEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 55546342542779999744898748741006886730199876358751----69986037877755677631344136
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7989899999999974
Q gi|254780476|r 105 KPISLSIFMETIKKYI 120 (123)
Q Consensus 105 KPi~~~~L~~~i~~~l 120 (123)
T Consensus 87 ~~~~~~~~~~r~~~l~ 102 (435)
T COG3706 87 KPVNDSQLFLRAKSLV 102 (435)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 7777177887526631