HHsearch alignment for GI: 254780476 and conserved domain: COG4753

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].
Probab=99.94  E-value=1.6e-25  Score=167.30  Aligned_cols=119  Identities=32%  Similarity=0.537  Sum_probs=110.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHH--HCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             8778995399899999999999--7898999-988979999999827998999950412969599999998285768995
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIE--TSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~--~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
T Consensus         1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~--~p~~~   78 (475)
T COG4753           1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQ--SPDTE   78 (475)
T ss_pred             CEEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCE
T ss_conf             9139996672999999998488563697578751457999999873499789981578887579999999974--99853


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99999249989999999769988998798989999999997403
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
T Consensus        79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k  122 (475)
T COG4753          79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK  122 (475)
T ss_pred             EEEEECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf             99984642058999998618521220769899999999999999