HHsearch alignment for GI: 254780476 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.95 E-value=9.1e-27 Score=174.52 Aligned_cols=120 Identities=18% Similarity=0.299 Sum_probs=113.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
T Consensus 2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~--p~~~vi 79 (202)
T PRK09390 2 TKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARG--SPLPVI 79 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCC--CCCCEE
T ss_conf 999799984999999999999998899899989999999997657979998779999989607999987228--998679
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 80 vlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 997457488889999829464455999999999999999971