HHsearch alignment for GI: 254780476 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.86 E-value=2.2e-20 Score=137.84 Aligned_cols=118 Identities=17% Similarity=0.297 Sum_probs=109.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
T Consensus 3 p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~--p~~~i 80 (210)
T PRK09935 3 PASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQ--ETVKV 80 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCCE
T ss_conf 7889998596999999999996298928999989999999999747999999889999988640567898738--99708
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
T Consensus 81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~ 122 (210)
T PRK09935 81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS 122 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 997176729999999966877688678999999999999985