HHsearch alignment for GI: 254780476 and conserved domain: PRK09935

>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.86  E-value=2.2e-20  Score=137.84  Aligned_cols=118  Identities=17%  Similarity=0.297  Sum_probs=109.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
T Consensus         3 p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~--p~~~i   80 (210)
T PRK09935          3 PASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQ--ETVKV   80 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCCE
T ss_conf             7889998596999999999996298928999989999999999747999999889999988640567898738--99708


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
T Consensus        81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~  122 (210)
T PRK09935         81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS  122 (210)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             997176729999999966877688678999999999999985