HHsearch alignment for GI: 254780476 and conserved domain: PRK10161

>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=100.00  E-value=6.1e-32  Score=204.26  Aligned_cols=122  Identities=26%  Similarity=0.433  Sum_probs=118.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
T Consensus         1 M~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII   80 (229)
T PRK10161          1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV   80 (229)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf             99719999599999999999999779999998999999999852899899997899887633587887750246897589


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
T Consensus        81 ~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR  122 (229)
T PRK10161         81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR  122 (229)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             995566657799998769876520899989999999999712