HHsearch alignment for GI: 254780476 and conserved domain: PRK10403
>PRK10403 transcriptional regulator NarP; Provisional.
Probab=99.88 E-value=1.6e-21 Score=144.40 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=108.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997-898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
T Consensus 6 pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~--p~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDG--VTAQI 83 (215)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC--CCCCE
T ss_conf 7579998398999999999997589928999989999999998644998999808998998741233565418--87736
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
T Consensus 84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~ 125 (215)
T PRK10403 84 IILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 886324323678998746876688489999999999999984