HHsearch alignment for GI: 254780476 and conserved domain: PRK10643
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional.
Probab=99.95 E-value=3.6e-27 Score=176.86 Aligned_cols=117 Identities=23% Similarity=0.354 Sum_probs=112.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 2 kILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~--~~~pII~lt 79 (222)
T PRK10643 2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKK--YTLPVLILT 79 (222)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC--CCCCEEEEE
T ss_conf 799992889999999999997899999989999999999748998999968889986226899998348--998899982
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 80 ~~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr 118 (222)
T PRK10643 80 ARDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRR 118 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 103678899999759977643887689999999999703