HHsearch alignment for GI: 254780476 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.96 E-value=3.4e-29 Score=188.47 Aligned_cols=117 Identities=22% Similarity=0.465 Sum_probs=110.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PII~ 76 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT---HQTPVIM 76 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC---CCCCEEE
T ss_conf 988999969899999999999888999999899999999964-898999991899988867230124407---8887899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
T Consensus 77 lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR 117 (232)
T PRK10955 77 LTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 80556768899999769757633899989999999999761