HHsearch alignment for GI: 254780476 and conserved domain: PRK13435

>PRK13435 response regulator; Provisional.
Probab=99.93  E-value=3.8e-25  Score=165.22  Aligned_cols=113  Identities=28%  Similarity=0.413  Sum_probs=102.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             7789953998999999999997898999-988979999999827998999950412-96959999999828576899599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQ-EISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp-~~dG~el~~~ir~~~~~~~ipii   80 (123)
T Consensus         2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~~---~ipvI   78 (141)
T PRK13435          2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSIDG---GVEVI   78 (141)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCC---CCCEE
T ss_conf             789998998999999999999879979997599999999976599989997887899998999999998759---98389


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99924998999999976998899879898999999999740
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
T Consensus        79 ~lTa~~---d~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~  116 (141)
T PRK13435         79 FMTANP---ERVGHDFAGALGVIAKPYSLRQVARALSYVAA  116 (141)
T ss_pred             EEECCH---HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf             997779---98601345998589899998999999999997