HHsearch alignment for GI: 254780476 and conserved domain: PRK13435
>PRK13435 response regulator; Provisional.
Probab=99.93 E-value=3.8e-25 Score=165.22 Aligned_cols=113 Identities=28% Similarity=0.413 Sum_probs=102.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 7789953998999999999997898999-988979999999827998999950412-96959999999828576899599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQ-EISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp-~~dG~el~~~ir~~~~~~~ipii 80 (123)
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~~---~ipvI 78 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSIDG---GVEVI 78 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCC---CCCEE
T ss_conf 789998998999999999999879979997599999999976599989997887899998999999998759---98389
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99924998999999976998899879898999999999740
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
T Consensus 79 ~lTa~~---d~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~ 116 (141)
T PRK13435 79 FMTANP---ERVGHDFAGALGVIAKPYSLRQVARALSYVAA 116 (141)
T ss_pred EEECCH---HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 997779---98601345998589899998999999999997