HHsearch alignment for GI: 254780476 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.62 E-value=1.2e-15 Score=110.62 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=99.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~t 96 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVVP 96 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEEE
T ss_conf 9999468887775234566677421276323888986531589876996565788867999999861--38999889995
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 24998999999976998899879898999999999740
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
T Consensus 97 ~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~ 132 (674)
T PRK13558 97 TAVDEDVARRAVDADATGLVPA--VSEDATAAIADRIE 132 (674)
T ss_pred CCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 6785899999875163643344--71768999999999