HHsearch alignment for GI: 254780476 and conserved domain: TIGR01387

>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.97  E-value=1.8e-31  Score=201.48  Aligned_cols=117  Identities=24%  Similarity=0.483  Sum_probs=113.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             89953998999999999997898999988979999999827998999950412969599999998285768995999992
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
T Consensus         1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~--~~~PVl~LTA   78 (219)
T TIGR01387         1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSG--KETPVLFLTA   78 (219)
T ss_pred             CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC--CCCCEEEEEC
T ss_conf             96763086026765305201234798877686247543688830899632588950689999984078--9873488833


Q ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             499899999997699889987989899999999974039
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a  123 (123)
T Consensus        79 ~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~  117 (219)
T TIGR01387        79 RDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRS  117 (219)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             788454353011478654137877603799999876775