HHsearch alignment for GI: 254780476 and conserved domain: cd02071
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.25 E-value=0.26 Score=28.30 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCC-CC-HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 39989999999999978989999---889799999998279989999504129-69-59999999828576899599999
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQE-IS-GLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~-~d-G~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G-~~di~v~-vG 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELG-AGDILVV-GG 87 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCCEEE-EE
T ss_conf 622877999999999789769967998899999999997399899996465544789999999999769-9984699-94
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 2499899999997699889987989899999999
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
T Consensus 88 G~Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i~ 121 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 5649899999997799889895889999999975