HHsearch alignment for GI: 254780476 and conserved domain: cd02072
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.35 E-value=0.087 Score=31.01 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 3998999999999997898999---988979999999827998999950412969--59999999828576899599999
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~~~~ipii~~t 83 (123)
T Consensus 10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~-G~~di~vvvGG 88 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA-GLKDILLYVGG 88 (128)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCCCCEEEECC
T ss_conf 65378899999999978972984798899999999998739999998232025624899999999967-99999899789
Q ss_pred -----ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf -----24998999999976998899879898999999999
Q gi|254780476|r 84 -----AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 84 -----~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
T Consensus 89 ~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~k 128 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLKK 128 (128)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHC
T ss_conf 8677831048999999966968574998799999999859