Query gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 128 out of 21461
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 18:06:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780476.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02154 PhoB phosphate regul 100.0 6.9E-39 1.8E-43 244.1 12.6 123 1-123 1-123 (226)
2 PRK11107 hybrid sensory histid 100.0 4.8E-34 1.2E-38 216.3 16.6 120 3-122 669-788 (920)
3 PRK09581 pleD response regulat 100.0 4.2E-33 1.1E-37 211.0 17.4 120 1-120 1-120 (457)
4 PRK10841 hybrid sensory kinase 100.0 1.4E-32 3.5E-37 208.0 16.6 118 3-122 825-942 (947)
5 PRK10161 transcriptional regul 100.0 6.1E-32 1.5E-36 204.3 16.5 122 1-122 1-122 (229)
6 PRK11091 aerobic respiration c 100.0 1.7E-31 4.2E-36 201.8 16.3 120 2-122 525-645 (779)
7 PRK09959 hybrid sensory histid 100.0 7.5E-31 1.9E-35 198.0 16.5 116 3-120 959-1074(1197)
8 PRK10610 chemotaxis regulatory 100.0 1.3E-30 3.3E-35 196.6 17.4 120 3-122 6-126 (129)
9 PRK10693 response regulator of 100.0 3.7E-30 9.4E-35 194.0 16.9 118 2-121 7-125 (337)
10 PRK10923 glnG nitrogen regulat 100.0 1.1E-29 2.8E-34 191.3 15.7 119 1-121 1-120 (469)
11 TIGR01387 cztR_silR_copR heavy 100.0 1.8E-31 4.7E-36 201.5 5.7 117 5-123 1-117 (219)
12 CHL00148 orf27 Ycf27; Reviewed 100.0 6.9E-30 1.8E-34 192.5 13.7 119 1-122 5-123 (240)
13 PRK11466 hybrid sensory histid 100.0 1.9E-29 5E-34 189.9 16.0 117 3-121 682-799 (912)
14 PRK11083 DNA-binding response 100.0 5.9E-29 1.5E-33 187.1 16.6 119 2-122 3-121 (229)
15 PRK09836 DNA-binding transcrip 100.0 3.8E-29 9.8E-34 188.2 15.6 117 4-122 2-118 (226)
16 PRK10336 DNA-binding transcrip 100.0 3E-29 7.6E-34 188.8 14.9 117 4-122 2-118 (219)
17 PRK10701 DNA-binding transcrip 100.0 1.3E-29 3.4E-34 190.8 13.1 118 2-122 1-118 (240)
18 pfam00072 Response_reg Respons 100.0 4.3E-29 1.1E-33 187.9 15.2 111 5-117 1-111 (111)
19 PRK11517 transcriptional regul 100.0 8.1E-29 2.1E-33 186.3 16.4 116 4-122 2-117 (223)
20 PRK11361 acetoacetate metaboli 100.0 7.8E-29 2E-33 186.4 16.0 118 2-121 4-121 (457)
21 PRK09468 ompR osmolarity respo 100.0 1E-28 2.6E-33 185.7 16.1 118 3-122 6-123 (239)
22 PRK10955 DNA-binding transcrip 100.0 3.4E-29 8.7E-34 188.5 13.6 117 2-122 1-117 (232)
23 PRK10529 DNA-binding transcrip 100.0 4E-29 1E-33 188.0 13.6 118 2-122 1-118 (225)
24 PRK10766 DNA-binding transcrip 100.0 5.4E-29 1.4E-33 187.3 13.9 118 1-121 1-118 (224)
25 cd00156 REC Signal receiver do 100.0 2.7E-28 6.8E-33 183.3 15.4 113 6-120 1-113 (113)
26 PRK11173 two-component respons 100.0 4.1E-28 1.1E-32 182.2 16.2 118 1-121 1-119 (237)
27 COG0745 OmpR Response regulato 100.0 5.6E-28 1.4E-32 181.5 15.5 119 3-123 1-119 (229)
28 PRK10365 transcriptional regul 100.0 7.8E-28 2E-32 180.7 16.1 117 3-121 6-122 (441)
29 PRK13557 histidine kinase; Pro 100.0 8.8E-28 2.2E-32 180.3 16.1 118 2-121 413-532 (538)
30 PRK10046 dpiA two-component re 100.0 2.2E-27 5.6E-32 178.1 16.2 117 3-121 5-123 (225)
31 PRK13856 two-component respons 100.0 2.5E-27 6.3E-32 177.8 16.2 117 2-121 1-118 (241)
32 PRK10710 DNA-binding transcrip 100.0 1.3E-27 3.4E-32 179.3 14.3 118 2-122 10-127 (240)
33 PRK10643 DNA-binding transcrip 100.0 3.6E-27 9.1E-32 176.9 16.5 117 4-122 2-118 (222)
34 KOG0519 consensus 100.0 1.5E-27 3.9E-32 178.9 13.5 119 2-121 666-785 (786)
35 PRK10816 DNA-binding transcrip 100.0 2.9E-27 7.4E-32 177.4 14.8 117 4-122 2-118 (223)
36 PRK09390 fixJ response regulat 99.9 9.1E-27 2.3E-31 174.5 15.3 120 1-122 2-121 (202)
37 PRK10430 DNA-binding transcrip 99.9 4.2E-26 1.1E-30 170.7 15.5 118 2-121 1-122 (239)
38 TIGR02875 spore_0_A sporulatio 99.9 2.2E-26 5.5E-31 172.4 13.9 120 3-122 3-124 (270)
39 COG2204 AtoC Response regulato 99.9 1.7E-25 4.4E-30 167.2 16.3 120 1-122 3-122 (464)
40 COG4753 Response regulator con 99.9 1.6E-25 4.2E-30 167.3 14.0 119 2-122 1-122 (475)
41 TIGR02956 TMAO_torS TMAO reduc 99.9 4.1E-26 1E-30 170.8 10.7 117 4-120 763-886 (1052)
42 PRK13435 response regulator; P 99.9 3.8E-25 9.6E-30 165.2 15.4 113 3-121 2-116 (141)
43 COG3437 Response regulator con 99.9 1E-24 2.6E-29 162.7 12.7 118 3-120 15-133 (360)
44 PRK00742 chemotaxis-specific m 99.9 7E-24 1.8E-28 157.9 16.6 104 1-107 1-108 (345)
45 TIGR01818 ntrC nitrogen regula 99.9 3.3E-24 8.5E-29 159.8 12.3 117 5-123 1-118 (471)
46 COG3706 PleD Response regulato 99.9 1.9E-23 4.7E-28 155.5 15.6 121 2-122 132-252 (435)
47 PRK12555 chemotaxis-specific m 99.9 1.6E-22 4.2E-27 150.1 14.8 102 3-107 2-107 (340)
48 PRK09958 DNA-binding transcrip 99.9 8.1E-22 2.1E-26 146.1 15.3 116 4-121 2-118 (204)
49 PRK09483 response regulator; P 99.9 1.7E-21 4.3E-26 144.3 16.0 118 2-121 1-120 (216)
50 PRK10651 transcriptional regul 99.9 7.8E-22 2E-26 146.2 13.8 117 2-120 6-124 (216)
51 PRK10403 transcriptional regul 99.9 1.6E-21 4.1E-26 144.4 14.6 118 2-121 6-125 (215)
52 COG4565 CitB Response regulato 99.9 1.1E-20 2.7E-25 139.7 14.5 116 4-121 2-119 (224)
53 COG4566 TtrR Response regulato 99.9 5.8E-21 1.5E-25 141.2 13.2 119 2-122 4-122 (202)
54 PRK09935 transcriptional regul 99.9 2.2E-20 5.6E-25 137.8 15.6 118 2-121 3-122 (210)
55 PRK10360 DNA-binding transcrip 99.9 3.1E-20 8E-25 137.0 15.8 115 2-121 1-117 (196)
56 COG2197 CitB Response regulato 99.9 6.1E-20 1.5E-24 135.3 16.2 116 4-121 2-119 (211)
57 COG0784 CheY FOG: CheY-like re 99.8 2E-19 5.2E-24 132.3 16.5 119 1-121 4-125 (130)
58 PRK13837 two-component VirA-li 99.8 2E-19 5E-24 132.4 15.0 116 3-122 700-817 (831)
59 PRK10840 transcriptional regul 99.8 3.7E-19 9.4E-24 130.8 16.0 117 3-121 4-125 (216)
60 PRK11697 putative two-componen 99.8 3.6E-19 9.3E-24 130.9 15.7 115 2-121 1-117 (239)
61 COG3947 Response regulator con 99.8 4.5E-19 1.1E-23 130.3 11.1 114 3-120 1-114 (361)
62 PRK09191 two-component respons 99.8 8.9E-19 2.3E-23 128.6 12.2 115 1-120 136-252 (261)
63 COG2201 CheB Chemotaxis respon 99.7 6.6E-17 1.7E-21 117.9 12.6 104 2-108 1-108 (350)
64 TIGR02915 PEP_resp_reg putativ 99.7 3.8E-17 9.6E-22 119.3 11.3 114 5-121 1-119 (451)
65 COG4567 Response regulator con 99.7 6E-16 1.5E-20 112.4 13.0 115 3-119 10-124 (182)
66 PRK10100 DNA-binding transcrip 99.7 2E-15 5.1E-20 109.4 13.6 116 2-120 10-125 (216)
67 PRK13558 bacterio-opsin activa 99.6 1.2E-15 3.1E-20 110.6 7.7 114 4-121 19-132 (674)
68 COG3707 AmiR Response regulato 99.6 1.1E-14 2.7E-19 105.2 11.7 116 1-119 4-120 (194)
69 PRK11475 DNA-binding transcrip 99.5 1.1E-12 2.7E-17 93.7 12.0 106 15-122 3-115 (205)
70 COG3279 LytT Response regulato 99.4 4.5E-12 1.1E-16 90.1 9.3 115 2-120 1-117 (244)
71 PRK09581 pleD response regulat 99.3 1.1E-10 2.9E-15 82.0 13.9 116 3-119 156-271 (457)
72 PRK11107 hybrid sensory histid 99.3 1.1E-10 2.9E-15 82.1 12.6 112 2-117 536-647 (920)
73 COG3706 PleD Response regulato 99.2 1.7E-11 4.3E-16 86.8 5.5 92 25-120 11-102 (435)
74 smart00448 REC cheY-homologous 99.1 2.3E-10 5.8E-15 80.3 8.3 55 3-57 1-55 (55)
75 pfam06490 FleQ Flagellar regul 98.6 1.3E-06 3.3E-11 58.7 11.7 107 4-119 1-107 (109)
76 cd02067 B12-binding B12 bindin 97.2 0.0074 1.9E-07 37.2 10.7 94 12-107 13-111 (119)
77 TIGR01815 TrpE-clade3 anthrani 97.0 0.0031 8E-08 39.3 7.1 100 2-107 524-624 (726)
78 PRK13566 anthranilate synthase 97.0 0.003 7.7E-08 39.4 6.6 78 2-83 523-602 (724)
79 pfam03709 OKR_DC_1_N Orn/Lys/A 96.6 0.028 7.2E-07 33.8 9.3 66 15-85 6-72 (111)
80 cd02072 Glm_B12_BD B12 binding 96.4 0.087 2.2E-06 31.0 12.2 109 9-118 10-128 (128)
81 COG4999 Uncharacterized domain 96.2 0.017 4.4E-07 35.1 6.4 110 2-117 11-122 (140)
82 PRK02261 methylaspartate mutas 96.2 0.11 2.7E-06 30.5 13.5 117 3-122 4-136 (137)
83 cd02070 corrinoid_protein_B12- 95.8 0.16 4.1E-06 29.5 10.7 100 4-106 84-192 (201)
84 COG2185 Sbm Methylmalonyl-CoA 95.8 0.16 4.1E-06 29.5 11.8 112 8-121 22-138 (143)
85 PRK09522 bifunctional anthrani 95.4 0.095 2.4E-06 30.8 7.3 77 2-83 1-84 (531)
86 PRK05637 anthranilate synthase 95.3 0.039 9.9E-07 33.0 5.0 78 2-83 1-80 (208)
87 cd02071 MM_CoA_mut_B12_BD meth 95.2 0.26 6.6E-06 28.3 13.7 107 9-117 10-121 (122)
88 PRK07206 hypothetical protein; 94.5 0.4 1E-05 27.2 13.1 121 1-122 1-181 (415)
89 pfam00563 EAL EAL domain. This 94.4 0.33 8.3E-06 27.7 7.9 94 11-106 130-233 (233)
90 COG0512 PabA Anthranilate/para 94.4 0.094 2.4E-06 30.8 5.1 79 2-83 1-81 (191)
91 PRK09426 methylmalonyl-CoA mut 94.1 0.5 1.3E-05 26.6 11.6 118 3-122 583-713 (715)
92 PRK06895 para-aminobenzoate sy 92.9 0.7 1.8E-05 25.8 7.4 78 1-83 1-80 (191)
93 PRK10551 hypothetical protein; 92.3 0.97 2.5E-05 25.0 10.3 108 8-118 394-512 (518)
94 PRK00758 GMP synthase subunit 92.3 0.39 9.9E-06 27.3 5.5 73 4-83 1-74 (184)
95 cd01948 EAL EAL domain. This d 91.5 0.82 2.1E-05 25.4 6.4 94 15-109 134-238 (240)
96 smart00052 EAL Putative diguan 91.3 0.69 1.8E-05 25.9 5.8 95 15-110 135-240 (241)
97 pfam05582 Peptidase_U57 YabG p 91.2 1.3 3.3E-05 24.3 11.0 98 1-100 104-222 (287)
98 PRK09776 putative sensor prote 91.1 1.3 3.4E-05 24.2 9.7 108 7-116 993-1111(1116)
99 pfam02310 B12-binding B12 bind 91.0 1.3 3.4E-05 24.2 10.4 92 9-103 11-109 (121)
100 cd02068 radical_SAM_B12_BD B12 90.9 1.4 3.6E-05 24.1 10.1 103 13-118 3-109 (127)
101 TIGR02855 spore_yabG sporulati 90.9 1.4 3.6E-05 24.1 10.0 102 1-106 112-235 (292)
102 PRK05928 hemD uroporphyrinogen 90.6 1.5 3.7E-05 24.0 11.1 115 3-122 127-252 (252)
103 COG2200 Rtn c-di-GMP phosphodi 90.2 1.6 4.1E-05 23.7 11.1 105 14-119 137-252 (256)
104 PRK10060 RNase II stability mo 90.0 1.7 4.2E-05 23.7 11.3 110 8-119 537-657 (663)
105 PRK07649 para-aminobenzoate/an 89.9 0.87 2.2E-05 25.3 5.3 74 5-83 2-79 (195)
106 PRK09590 celB cellobiose phosp 89.8 1.7 4.4E-05 23.6 8.9 97 2-118 1-102 (104)
107 PRK08007 para-aminobenzoate sy 89.3 0.88 2.2E-05 25.2 4.9 89 5-100 2-92 (187)
108 PRK11359 cAMP phosphodiesteras 89.1 2 5E-05 23.2 10.7 105 15-120 680-795 (799)
109 PRK10909 rsmD 16S rRNA m(2)G96 88.8 2.1 5.3E-05 23.1 9.2 82 2-84 75-158 (198)
110 PRK05670 anthranilate synthase 88.3 1 2.6E-05 24.9 4.7 77 4-83 1-79 (192)
111 COG4122 Predicted O-methyltran 88.1 1.8 4.5E-05 23.5 5.8 75 3-83 85-165 (219)
112 PRK13223 phosphoglycolate phos 87.0 2.2 5.7E-05 22.9 5.8 106 7-119 24-170 (272)
113 CHL00101 trpG anthranilate syn 87.0 1.7 4.3E-05 23.6 5.2 74 5-83 2-79 (190)
114 PRK01372 ddl D-alanine--D-alan 86.9 2.7 6.9E-05 22.5 10.1 117 1-120 3-166 (304)
115 PRK06774 para-aminobenzoate sy 86.9 1.5 3.8E-05 23.9 4.9 76 5-83 2-79 (191)
116 KOG1562 consensus 86.7 2.8 7E-05 22.4 7.0 64 4-67 147-216 (337)
117 COG1568 Predicted methyltransf 86.3 0.8 2E-05 25.5 3.2 89 1-90 174-266 (354)
118 TIGR00078 nadC nicotinate-nucl 86.2 2.9 7.5E-05 22.2 9.3 80 15-101 173-257 (276)
119 cd06358 PBP1_NHase Type I peri 85.6 3.1 8E-05 22.1 12.7 88 2-93 132-230 (333)
120 PRK08857 para-aminobenzoate sy 85.6 1.7 4.2E-05 23.7 4.6 87 5-100 2-92 (192)
121 PRK11596 EAL domain-containing 85.0 3.4 8.7E-05 21.9 9.1 94 22-116 149-252 (255)
122 PRK13229 consensus 84.9 2.2 5.5E-05 23.0 4.9 114 1-119 5-163 (234)
123 cd06268 PBP1_ABC_transporter_L 84.6 3.5 9E-05 21.8 12.3 102 2-107 135-247 (298)
124 PRK01130 N-acetylmannosamine-6 84.6 3.5 9E-05 21.8 13.7 105 11-120 104-220 (222)
125 cd01743 GATase1_Anthranilate_S 84.4 1.8 4.6E-05 23.4 4.3 74 5-83 1-78 (184)
126 pfam10087 DUF2325 Uncharacteri 84.2 3.7 9.4E-05 21.7 8.0 88 4-94 1-91 (96)
127 cd02069 methionine_synthase_B1 82.7 4.3 0.00011 21.3 9.7 95 9-106 99-202 (213)
128 PRK10624 L-1,2-propanediol oxi 82.5 4.3 0.00011 21.3 9.4 86 2-90 29-144 (381)
129 PRK10558 alpha-dehydro-beta-de 82.4 4.4 0.00011 21.2 10.4 106 11-117 3-111 (256)
130 PRK10310 galactitol-specific P 82.0 4.5 0.00011 21.2 7.4 80 1-96 1-90 (94)
131 pfam01596 Methyltransf_3 O-met 81.7 4.6 0.00012 21.1 7.5 79 3-85 70-155 (204)
132 pfam01861 DUF43 Protein of unk 81.6 3 7.8E-05 22.1 4.6 85 1-86 66-153 (243)
133 PRK00994 F420-dependent methyl 81.4 4.7 0.00012 21.0 9.1 81 23-106 28-116 (276)
134 PRK13138 consensus 81.2 4.8 0.00012 21.0 6.3 45 62-108 78-128 (264)
135 PRK05752 uroporphyrinogen-III 80.8 5 0.00013 20.9 12.9 113 2-123 130-254 (255)
136 pfam00117 GATase Glutamine ami 80.8 4.9 0.00013 20.9 5.4 74 6-83 1-78 (187)
137 pfam00478 IMPDH IMP dehydrogen 80.7 5 0.00013 20.9 6.0 60 40-102 229-289 (467)
138 PRK13226 phosphoglycolate phos 79.5 4 0.0001 21.5 4.6 107 7-119 15-156 (221)
139 PRK09423 gldA glycerol dehydro 79.5 5.5 0.00014 20.7 7.2 78 2-85 29-117 (366)
140 cd01522 RHOD_1 Member of the R 79.4 5.6 0.00014 20.6 5.8 66 34-101 2-91 (117)
141 PRK09482 xni exonuclease IX; P 79.4 5.6 0.00014 20.6 6.6 113 1-118 1-117 (256)
142 PRK03958 tRNA 2'-O-methylase; 78.5 5.9 0.00015 20.5 9.0 100 2-107 31-133 (175)
143 pfam04131 NanE Putative N-acet 78.4 6 0.00015 20.5 9.9 85 17-106 83-174 (192)
144 pfam00977 His_biosynth Histidi 78.4 6 0.00015 20.5 6.4 65 37-104 151-219 (229)
145 PRK13118 consensus 78.4 6 0.00015 20.5 7.3 48 62-111 82-135 (269)
146 PRK02645 ppnK inorganic polyph 78.3 6 0.00015 20.5 9.6 90 2-109 3-102 (304)
147 cd04730 NPD_like 2-Nitropropan 78.1 6.1 0.00016 20.4 10.8 83 18-104 94-184 (236)
148 PRK13337 putative lipid kinase 77.9 6.2 0.00016 20.4 7.7 77 1-83 1-91 (305)
149 pfam03602 Cons_hypoth95 Conser 77.5 6.4 0.00016 20.3 9.1 82 2-83 66-150 (181)
150 COG1454 EutG Alcohol dehydroge 76.7 6.7 0.00017 20.2 10.3 86 3-91 30-143 (377)
151 PRK05718 keto-hydroxyglutarate 75.9 7 0.00018 20.1 11.5 98 14-115 4-103 (212)
152 cd06342 PBP1_ABC_LIVBP_like Ty 75.8 7.1 0.00018 20.0 13.7 116 2-121 135-268 (334)
153 cd01121 Sms Sms (bacterial rad 75.7 7.1 0.00018 20.0 6.9 81 3-83 111-207 (372)
154 PRK07765 para-aminobenzoate sy 75.5 7.2 0.00018 20.0 5.8 75 4-83 2-83 (221)
155 COG0157 NadC Nicotinate-nucleo 75.3 7.3 0.00019 20.0 10.9 92 5-102 161-259 (280)
156 PRK00120 putative deoxyribonuc 75.3 4.4 0.00011 21.2 3.9 32 1-32 1-32 (197)
157 PRK10826 2-deoxyglucose-6-phos 75.1 7.4 0.00019 19.9 6.4 108 7-119 18-161 (222)
158 PRK05993 short chain dehydroge 74.9 7.5 0.00019 19.9 7.5 56 1-56 3-58 (277)
159 PRK08385 nicotinate-nucleotide 74.7 7.6 0.00019 19.9 7.8 72 28-102 186-257 (279)
160 PRK04128 1-(5-phosphoribosyl)- 74.2 7.8 0.0002 19.8 8.1 73 26-103 136-209 (228)
161 TIGR02253 CTE7 HAD superfamily 73.7 8 0.0002 19.7 6.0 55 60-119 117-182 (244)
162 cd04729 NanE N-acetylmannosami 73.7 8 0.0002 19.7 10.7 90 12-105 109-206 (219)
163 PRK08017 short chain dehydroge 73.4 8.2 0.00021 19.7 7.6 57 1-57 1-57 (256)
164 PRK00811 spermidine synthase; 72.9 8.4 0.00021 19.6 5.9 77 3-82 103-191 (283)
165 TIGR00708 cobA cob(I)alamin ad 72.9 8 0.0002 19.7 4.7 56 38-96 106-166 (191)
166 PRK13585 1-(5-phosphoribosyl)- 72.3 8.7 0.00022 19.5 7.3 80 35-117 150-239 (240)
167 PRK06552 keto-hydroxyglutarate 71.8 8.9 0.00023 19.5 11.4 99 16-117 4-106 (209)
168 PRK07053 glutamine amidotransf 71.5 4.5 0.00011 21.2 3.1 81 1-83 1-90 (235)
169 cd04509 PBP1_ABC_transporter_G 71.1 9.3 0.00024 19.4 12.3 104 2-107 136-250 (299)
170 PRK11823 DNA repair protein Ra 70.5 9.6 0.00024 19.3 9.1 81 3-83 118-214 (454)
171 cd04728 ThiG Thiazole synthase 70.2 9.7 0.00025 19.3 8.7 102 14-120 109-224 (248)
172 COG0742 N6-adenine-specific me 70.2 9.7 0.00025 19.2 9.5 82 2-83 66-153 (187)
173 pfam03796 DnaB_C DnaB-like hel 69.8 6.4 0.00016 20.3 3.6 42 43-84 126-179 (186)
174 pfam00448 SRP54 SRP54-type pro 69.7 10 0.00025 19.2 9.8 101 2-105 29-149 (196)
175 PRK10966 exonuclease subunit S 69.7 9.9 0.00025 19.2 4.6 53 39-92 32-90 (402)
176 PRK10128 putative aldolase; Pr 69.3 10 0.00026 19.1 10.3 82 35-117 11-93 (250)
177 cd06360 PBP1_alkylbenzenes_lik 69.0 10 0.00026 19.1 14.9 118 2-121 134-269 (336)
178 cd06335 PBP1_ABC_ligand_bindin 68.7 10 0.00027 19.1 12.6 92 3-98 139-241 (347)
179 PRK10669 putative cation:proto 68.7 10 0.00027 19.1 9.4 95 3-106 441-536 (558)
180 cd02065 B12-binding_like B12 b 68.5 11 0.00027 19.0 7.7 69 12-81 13-85 (125)
181 PRK08904 consensus 68.5 11 0.00027 19.0 11.4 93 19-115 4-98 (207)
182 CHL00162 thiG thiamin biosynth 68.4 11 0.00027 19.0 9.4 103 13-120 122-238 (267)
183 cd03115 SRP The signal recogni 68.2 11 0.00027 19.0 9.8 103 3-105 29-148 (173)
184 COG0421 SpeE Spermidine syntha 68.1 11 0.00027 19.0 7.2 78 2-82 100-188 (282)
185 TIGR00336 pyrE orotate phospho 67.8 8.2 0.00021 19.7 3.8 62 3-84 118-183 (187)
186 TIGR03239 GarL 2-dehydro-3-deo 67.6 11 0.00028 18.9 10.1 84 33-117 20-104 (249)
187 PRK08782 consensus 67.0 11 0.00029 18.8 11.6 99 15-117 7-107 (219)
188 TIGR00089 TIGR00089 RNA modifi 66.7 12 0.00029 18.8 9.0 100 11-121 12-118 (455)
189 COG0621 MiaB 2-methylthioadeni 66.5 12 0.0003 18.8 8.1 111 1-121 1-116 (437)
190 KOG1601 consensus 66.4 1 2.5E-05 24.9 -1.1 104 6-109 19-126 (340)
191 KOG4175 consensus 66.1 12 0.0003 18.8 6.3 83 36-119 35-143 (268)
192 PRK05595 replicative DNA helic 66.1 9.1 0.00023 19.4 3.8 66 20-85 279-360 (444)
193 PRK13055 putative lipid kinase 65.8 12 0.00031 18.7 7.6 87 1-94 1-102 (334)
194 cd02990 UAS_FAF1 UAS family, F 64.6 13 0.00032 18.6 6.0 87 13-121 48-134 (136)
195 cd04732 HisA HisA. Phosphorib 64.1 13 0.00033 18.5 8.0 68 34-104 147-218 (234)
196 pfam01993 MTD methylene-5,6,7, 64.1 13 0.00033 18.5 9.7 81 23-106 27-116 (276)
197 COG2022 ThiG Uncharacterized e 64.0 13 0.00033 18.5 8.3 82 19-105 123-211 (262)
198 PRK07413 hypothetical protein; 63.7 13 0.00034 18.5 4.3 45 44-91 123-172 (382)
199 TIGR00619 sbcd nuclease SbcCD, 63.5 13 0.00034 18.5 4.7 56 38-93 40-102 (275)
200 PRK09860 putative alcohol dehy 63.4 13 0.00034 18.5 11.1 88 2-92 31-146 (383)
201 PRK05636 replicative DNA helic 63.3 11 0.00027 19.0 3.7 68 19-86 344-427 (507)
202 PRK07455 keto-hydroxyglutarate 63.3 13 0.00034 18.4 11.5 92 18-115 6-101 (210)
203 COG0352 ThiE Thiamine monophos 63.2 13 0.00034 18.4 8.9 78 20-102 99-183 (211)
204 TIGR02982 heterocyst_DevA ABC 63.2 12 0.00031 18.7 4.0 69 17-85 121-201 (220)
205 PRK05848 nicotinate-nucleotide 62.9 14 0.00035 18.4 10.5 94 4-102 153-253 (272)
206 pfam09936 DUF2168 Uncharacteri 62.5 14 0.00035 18.4 9.5 98 3-108 43-161 (185)
207 PRK06857 consensus 62.5 14 0.00035 18.3 11.3 92 20-115 7-100 (209)
208 PRK00208 thiG thiazole synthas 62.3 14 0.00036 18.3 9.6 102 14-120 110-225 (256)
209 PRK09140 2-dehydro-3-deoxy-6-p 61.9 14 0.00036 18.3 11.5 91 20-115 5-99 (206)
210 PRK11587 putative phosphatase; 61.3 7.3 0.00019 20.0 2.6 107 7-119 14-151 (218)
211 cd06329 PBP1_SBP_like_3 Peripl 61.2 15 0.00037 18.2 10.3 90 2-96 143-246 (342)
212 COG0637 Predicted phosphatase/ 60.9 15 0.00038 18.2 7.1 109 6-119 12-155 (221)
213 pfam07688 KaiA KaiA domain. Th 60.8 15 0.00038 18.2 8.7 74 7-85 5-80 (283)
214 COG1537 PelA Predicted RNA-bin 60.5 15 0.00039 18.1 4.1 54 49-107 292-351 (352)
215 pfam01564 Spermine_synth Sperm 60.4 15 0.00039 18.1 6.3 78 2-82 99-187 (240)
216 COG1927 Mtd Coenzyme F420-depe 60.3 15 0.00039 18.1 9.8 82 22-106 27-117 (277)
217 PRK00312 pcm protein-L-isoaspa 60.3 7.9 0.0002 19.8 2.6 69 1-72 99-169 (213)
218 cd02809 alpha_hydroxyacid_oxid 59.9 15 0.00039 18.1 8.9 74 27-104 120-199 (299)
219 PRK13805 bifunctional acetalde 59.8 16 0.0004 18.1 10.3 64 2-68 482-558 (862)
220 pfam01081 Aldolase KDPG and KH 59.7 16 0.0004 18.1 10.9 87 20-112 3-93 (196)
221 pfam01976 DUF116 Protein of un 59.6 16 0.0004 18.1 5.1 62 16-83 76-137 (158)
222 PRK12723 flagellar biosynthesi 59.5 16 0.0004 18.0 10.6 100 5-105 209-321 (388)
223 pfam05690 ThiG Thiazole biosyn 58.9 16 0.00041 18.0 10.5 102 14-120 108-223 (246)
224 PRK06015 keto-hydroxyglutarate 58.8 16 0.00041 18.0 11.7 99 15-117 5-105 (212)
225 PRK11574 hypothetical protein; 58.6 11 0.00029 18.8 3.2 84 1-85 1-108 (196)
226 PRK13140 consensus 58.5 16 0.00042 17.9 7.5 47 62-111 79-131 (257)
227 PRK13175 consensus 58.4 16 0.00042 17.9 4.6 71 2-83 1-81 (206)
228 PHA02518 ParA-like protein; Pr 58.3 16 0.00042 17.9 5.1 64 2-69 29-97 (211)
229 TIGR01405 polC_Gram_pos DNA po 57.7 16 0.0004 18.0 3.8 66 8-75 266-332 (1264)
230 PRK03612 spermidine synthase; 57.7 17 0.00043 17.9 8.1 77 3-82 318-409 (516)
231 cd04723 HisA_HisF Phosphoribos 57.6 17 0.00043 17.9 8.7 68 34-104 147-217 (233)
232 PRK09165 replicative DNA helic 57.1 16 0.00042 17.9 3.8 68 19-86 296-381 (484)
233 TIGR01134 purF amidophosphorib 56.9 17 0.00045 17.8 4.0 33 3-35 361-398 (467)
234 PRK13587 1-(5-phosphoribosyl)- 56.9 17 0.00045 17.8 9.0 72 33-107 148-224 (234)
235 pfam06073 DUF934 Bacterial pro 56.4 18 0.00045 17.7 8.5 74 43-118 14-91 (110)
236 PRK11829 biofilm formation reg 56.4 18 0.00045 17.7 10.5 105 8-116 603-720 (728)
237 PRK12724 flagellar biosynthesi 56.3 18 0.00045 17.7 10.3 103 2-105 252-368 (432)
238 pfam00465 Fe-ADH Iron-containi 55.5 18 0.00047 17.6 10.1 83 2-87 22-132 (312)
239 PRK10901 16S rRNA methyltransf 55.1 19 0.00048 17.6 5.0 54 3-56 270-324 (428)
240 PRK11572 copper homeostasis pr 55.1 19 0.00048 17.6 9.3 93 7-102 95-195 (248)
241 PRK07024 short chain dehydroge 55.1 19 0.00048 17.6 9.0 80 1-82 1-83 (256)
242 PRK07315 fructose-bisphosphate 54.7 19 0.00048 17.6 6.7 40 61-102 189-229 (293)
243 PRK13180 consensus 54.7 19 0.00049 17.6 5.1 45 2-52 1-45 (209)
244 PRK13143 hisH imidazole glycer 54.3 19 0.00049 17.5 5.0 71 2-83 1-79 (201)
245 cd01742 GATase1_GMP_Synthase T 54.0 20 0.0005 17.5 7.3 73 5-83 1-77 (181)
246 cd06334 PBP1_ABC_ligand_bindin 53.8 20 0.0005 17.5 11.7 96 3-103 141-247 (351)
247 PRK13561 putative phosphodiest 53.1 20 0.00051 17.4 10.6 102 11-115 532-646 (651)
248 PRK11840 bifunctional sulfur c 53.1 20 0.00051 17.4 9.0 97 19-120 191-299 (327)
249 pfam02475 Met_10 Met-10+ like- 52.8 20 0.00052 17.4 3.8 24 4-27 126-149 (199)
250 pfam00456 Transketolase_N Tran 51.8 21 0.00054 17.3 5.6 54 3-56 175-245 (333)
251 COG3684 LacD Tagatose-1,6-bisp 51.6 21 0.00055 17.3 5.2 59 46-104 197-262 (306)
252 cd00984 DnaB_C DnaB helicase C 51.4 22 0.00055 17.3 4.1 44 43-86 120-173 (242)
253 PRK12857 putative aldolase; Re 50.5 22 0.00057 17.2 8.8 66 33-102 155-229 (284)
254 cd02803 OYE_like_FMN_family Ol 50.5 22 0.00057 17.2 7.2 42 58-102 266-307 (327)
255 pfam02254 TrkA_N TrkA-N domain 50.4 22 0.00057 17.2 10.2 91 4-103 22-113 (115)
256 TIGR01244 TIGR01244 conserved 50.3 22 0.00057 17.2 3.7 33 91-123 50-86 (136)
257 PRK03220 consensus 50.2 22 0.00057 17.2 10.2 80 36-118 162-251 (257)
258 PRK08760 replicative DNA helic 50.2 23 0.00057 17.1 5.8 67 19-85 306-388 (476)
259 cd02012 TPP_TK Thiamine pyroph 50.1 23 0.00058 17.1 4.1 70 49-119 132-212 (255)
260 PRK13222 phosphoglycolate phos 49.8 23 0.00058 17.1 5.4 52 62-118 99-161 (228)
261 TIGR03600 phage_DnaB phage rep 49.8 21 0.00054 17.3 3.4 68 19-86 271-354 (421)
262 PRK06096 molybdenum transport 49.6 23 0.00059 17.1 12.8 94 4-102 159-261 (284)
263 PRK13942 protein-L-isoaspartat 49.5 19 0.00049 17.5 3.1 68 2-72 101-170 (214)
264 TIGR01334 modD modD protein; I 49.5 23 0.00059 17.1 9.7 92 8-104 169-262 (277)
265 COG0167 PyrD Dihydroorotate de 49.2 23 0.0006 17.1 6.7 57 63-120 229-292 (310)
266 TIGR01163 rpe ribulose-phospha 49.1 23 0.0006 17.0 7.3 95 10-104 90-196 (216)
267 TIGR02463 MPGP_rel mannosyl-3- 48.8 17 0.00045 17.8 2.8 36 62-101 22-57 (224)
268 COG0134 TrpC Indole-3-glycerol 48.7 24 0.00061 17.0 8.7 88 14-105 144-236 (254)
269 PRK08082 consensus 48.6 24 0.00061 17.0 4.4 67 20-86 281-364 (453)
270 PRK11059 regulatory protein Cs 48.4 24 0.00061 17.0 10.3 98 10-108 532-640 (642)
271 PRK11144 modC molybdate transp 48.3 24 0.00062 17.0 4.3 71 15-85 106-188 (352)
272 PRK13117 consensus 47.7 25 0.00063 16.9 11.7 94 6-103 127-232 (268)
273 cd06348 PBP1_ABC_ligand_bindin 47.6 25 0.00063 16.9 14.5 115 3-121 137-270 (344)
274 cd01573 modD_like ModD; Quinol 47.3 25 0.00064 16.9 9.8 71 28-103 186-256 (272)
275 PRK12858 tagatose 1,6-diphosph 47.3 25 0.00064 16.9 6.4 60 45-104 198-277 (340)
276 COG0420 SbcD DNA repair exonuc 47.3 25 0.00064 16.9 4.3 57 35-92 29-91 (390)
277 pfam05175 MTS Methyltransferas 47.2 25 0.00064 16.9 3.9 61 3-66 56-120 (170)
278 PRK13224 consensus 46.9 25 0.00065 16.8 5.5 106 7-118 12-154 (216)
279 cd00133 PTS_IIB PTS_IIB: subun 46.8 26 0.00065 16.8 8.9 76 4-96 1-82 (84)
280 PRK08694 consensus 46.7 26 0.00065 16.8 3.6 68 19-86 295-380 (468)
281 PRK06953 short chain dehydroge 46.7 26 0.00065 16.8 7.2 77 2-84 1-78 (222)
282 TIGR00631 uvrb excinuclease AB 46.7 26 0.00065 16.8 5.6 106 4-109 449-592 (667)
283 TIGR03407 urea_ABC_UrtA urea A 46.6 26 0.00066 16.8 9.7 79 2-82 134-224 (359)
284 COG0518 GuaA GMP synthase - Gl 46.5 25 0.00063 16.9 3.3 81 2-83 1-86 (198)
285 cd01144 BtuF Cobalamin binding 46.3 26 0.00066 16.8 5.7 73 39-120 50-122 (245)
286 TIGR03499 FlhF flagellar biosy 46.1 26 0.00067 16.8 6.1 20 97-118 250-269 (282)
287 cd03823 GT1_ExpE7_like This fa 46.1 26 0.00067 16.8 10.2 53 61-122 277-329 (359)
288 cd06330 PBP1_Arsenic_SBP_like 46.0 26 0.00067 16.8 9.5 79 3-83 139-230 (346)
289 TIGR01497 kdpB K+-transporting 45.8 27 0.00068 16.7 5.5 80 35-119 414-504 (675)
290 pfam03808 Glyco_tran_WecB Glyc 45.6 27 0.00068 16.7 7.2 66 3-70 49-123 (172)
291 COG4148 ModC ABC-type molybdat 45.6 27 0.00068 16.7 4.2 69 20-88 120-191 (352)
292 cd06273 PBP1_GntR_like_1 This 45.2 27 0.00069 16.7 9.3 65 11-82 11-84 (268)
293 COG3836 HpcH 2,4-dihydroxyhept 45.1 27 0.00069 16.7 8.7 95 18-113 8-105 (255)
294 PTZ00089 transketolase; Provis 45.1 27 0.00069 16.7 4.9 72 3-74 179-281 (670)
295 cd01129 PulE-GspE PulE/GspE Th 45.0 27 0.00069 16.7 6.5 88 2-102 108-201 (264)
296 cd06285 PBP1_LacI_like_7 Ligan 45.0 27 0.0007 16.7 9.2 61 15-82 18-84 (265)
297 cd03819 GT1_WavL_like This fam 44.7 28 0.0007 16.6 3.8 43 75-121 287-329 (355)
298 cd01423 MGS_CPS_I_III Methylgl 44.6 23 0.00059 17.1 2.9 91 3-100 1-103 (116)
299 COG4594 FecB ABC-type Fe3+-cit 44.6 22 0.00057 17.2 2.8 70 5-85 71-141 (310)
300 cd00516 PRTase_typeII Phosphor 44.4 28 0.00071 16.6 7.8 71 31-102 190-264 (281)
301 COG0036 Rpe Pentose-5-phosphat 44.3 28 0.00071 16.6 8.0 103 19-121 102-218 (220)
302 cd06336 PBP1_ABC_ligand_bindin 44.2 28 0.00072 16.6 11.6 97 3-102 139-246 (347)
303 PRK08506 replicative DNA helic 44.0 28 0.00072 16.6 4.8 67 19-85 269-352 (473)
304 PRK08104 consensus 43.9 28 0.00072 16.6 11.0 84 20-107 10-95 (212)
305 TIGR01556 rhamnosyltran rhamno 43.8 28 0.00073 16.6 5.3 65 3-68 25-103 (291)
306 cd00331 IGPS Indole-3-glycerol 43.8 28 0.00073 16.6 9.0 87 14-104 109-200 (217)
307 pfam01729 QRPTase_C Quinolinat 43.6 29 0.00073 16.5 9.6 69 29-102 84-152 (169)
308 cd01122 GP4d_helicase GP4d_hel 43.6 29 0.00073 16.5 4.0 45 41-85 135-190 (271)
309 cd06355 PBP1_FmdD_like Peripla 43.4 29 0.00074 16.5 11.5 79 2-82 133-223 (348)
310 COG2805 PilT Tfp pilus assembl 43.3 29 0.00074 16.5 3.2 60 2-65 154-216 (353)
311 TIGR00515 accD acetyl-CoA carb 43.2 29 0.00074 16.5 3.7 52 43-95 125-181 (292)
312 pfam01135 PCMT Protein-L-isoas 43.0 29 0.00075 16.5 3.6 66 4-72 100-167 (205)
313 PRK04195 replication factor C 43.0 29 0.00075 16.5 8.5 95 21-121 60-175 (403)
314 cd06331 PBP1_AmiC_like Type I 42.8 30 0.00075 16.5 12.9 87 2-91 132-229 (333)
315 cd06327 PBP1_SBP_like_1 Peripl 42.8 30 0.00075 16.5 12.3 115 3-121 136-269 (334)
316 PRK13523 NADPH dehydrogenase N 42.7 30 0.00076 16.5 6.0 56 44-102 238-301 (337)
317 PRK03659 glutathione-regulated 42.5 30 0.00076 16.4 10.0 96 3-107 424-520 (602)
318 PRK09922 UDP-D-galactose:(gluc 42.1 30 0.00077 16.4 9.3 54 61-122 273-326 (361)
319 COG2109 BtuR ATP:corrinoid ade 41.8 31 0.00078 16.4 5.9 56 38-96 114-174 (198)
320 PRK00748 1-(5-phosphoribosyl)- 41.6 31 0.00079 16.4 8.1 81 35-118 147-240 (241)
321 PRK13597 imidazole glycerol ph 41.5 31 0.00079 16.4 9.3 68 47-117 167-243 (252)
322 PRK12399 tagatose 1,6-diphosph 41.5 31 0.00079 16.3 7.1 64 41-104 191-274 (324)
323 TIGR01285 nifN nitrogenase mol 41.2 31 0.0008 16.3 4.9 66 32-97 76-148 (451)
324 COG1303 Uncharacterized protei 40.9 32 0.00081 16.3 10.7 112 2-120 32-147 (179)
325 COG2179 Predicted hydrolase of 40.9 32 0.00081 16.3 7.0 111 6-119 39-153 (175)
326 TIGR01182 eda 2-dehydro-3-deox 40.6 32 0.00082 16.3 4.6 94 6-106 14-130 (205)
327 PRK06202 hypothetical protein; 40.6 32 0.00082 16.3 5.2 75 4-81 91-165 (233)
328 cd06299 PBP1_LacI_like_13 Liga 40.5 32 0.00082 16.3 9.1 65 11-82 11-84 (265)
329 TIGR02317 prpB methylisocitrat 40.4 15 0.00037 18.2 1.4 85 16-101 3-105 (287)
330 COG0118 HisH Glutamine amidotr 40.3 32 0.00083 16.2 5.0 70 2-82 1-80 (204)
331 cd03421 SirA_like_N SirA_like_ 40.2 33 0.00083 16.2 3.7 32 4-35 27-58 (67)
332 CHL00200 trpA tryptophan synth 39.9 33 0.00084 16.2 10.3 47 62-111 80-132 (263)
333 cd03298 ABC_ThiQ_thiamine_tran 39.8 33 0.00084 16.2 5.6 75 11-85 102-188 (211)
334 PRK13127 consensus 39.7 33 0.00084 16.2 14.7 112 5-120 119-251 (262)
335 PRK00683 murD UDP-N-acetylmura 39.5 33 0.00085 16.2 9.1 99 2-104 3-134 (418)
336 cd01149 HutB Hemin binding pro 39.3 34 0.00086 16.2 6.6 73 39-120 51-124 (235)
337 PRK10436 hypothetical protein; 39.1 34 0.00086 16.1 4.4 19 35-53 273-291 (461)
338 cd01140 FatB Siderophore bindi 39.1 34 0.00086 16.1 3.3 16 39-54 65-80 (270)
339 PRK13137 consensus 39.0 34 0.00087 16.1 7.5 47 62-111 89-141 (266)
340 cd01148 TroA_a Metal binding p 39.0 34 0.00087 16.1 4.7 42 39-84 72-114 (284)
341 cd01542 PBP1_TreR_like Ligand- 38.8 34 0.00087 16.1 9.1 37 16-52 19-61 (259)
342 PRK12738 kbaY tagatose-bisphos 38.7 34 0.00088 16.1 8.4 66 33-102 155-229 (286)
343 COG1222 RPT1 ATP-dependent 26S 38.6 34 0.00088 16.1 6.1 72 36-107 234-321 (406)
344 cd01844 SGNH_hydrolase_like_6 38.5 35 0.00088 16.1 6.0 60 24-85 29-102 (177)
345 KOG0781 consensus 38.5 35 0.00088 16.1 5.2 62 24-85 444-505 (587)
346 cd06282 PBP1_GntR_like_2 Ligan 38.4 35 0.00089 16.1 9.5 67 10-82 10-85 (266)
347 TIGR02102 pullulan_Gpos pullul 38.1 16 0.0004 18.1 1.2 47 1-52 637-688 (1164)
348 PRK13288 pyrophosphatase PpaX; 38.1 35 0.0009 16.0 6.2 33 63-99 89-121 (214)
349 cd03804 GT1_wbaZ_like This fam 38.0 35 0.0009 16.0 3.5 53 61-122 274-326 (351)
350 PRK03562 glutathione-regulated 37.8 36 0.00091 16.0 10.2 95 4-107 424-519 (615)
351 COG1856 Uncharacterized homolo 37.7 34 0.00088 16.1 2.9 100 7-108 118-254 (275)
352 COG1066 Sms Predicted ATP-depe 37.6 36 0.00091 16.0 7.6 80 3-82 121-216 (456)
353 PRK07589 ornithine cyclodeamin 37.6 36 0.00091 16.0 5.8 38 3-40 155-192 (346)
354 PRK08591 acetyl-CoA carboxylas 37.5 36 0.00092 16.0 5.1 38 1-39 1-38 (449)
355 cd03805 GT1_ALG2_like This fam 37.4 36 0.00092 16.0 4.0 42 75-121 322-363 (392)
356 PRK05703 flhF flagellar biosyn 37.3 36 0.00092 16.0 11.1 102 4-107 242-355 (412)
357 cd01147 HemV-2 Metal binding p 37.0 37 0.00093 15.9 4.7 74 39-120 67-141 (262)
358 cd06326 PBP1_STKc_like Type I 36.9 37 0.00094 15.9 11.8 88 3-94 137-235 (336)
359 COG1091 RfbD dTDP-4-dehydrorha 36.8 37 0.00094 15.9 6.3 57 5-62 3-66 (281)
360 PRK07896 nicotinate-nucleotide 36.8 37 0.00094 15.9 11.5 94 4-102 171-270 (288)
361 TIGR01090 apt adenine phosphor 36.7 37 0.00094 15.9 3.6 33 2-34 114-149 (175)
362 cd01541 PBP1_AraR Ligand-bindi 36.7 37 0.00094 15.9 9.2 69 11-84 11-91 (273)
363 cd06296 PBP1_CatR_like Ligand- 36.5 37 0.00095 15.9 7.9 67 10-83 10-85 (270)
364 PRK06101 short chain dehydroge 36.5 37 0.00095 15.9 7.5 57 2-58 1-57 (241)
365 cd03795 GT1_like_4 This family 36.4 37 0.00095 15.9 3.5 54 61-122 279-332 (357)
366 PRK13173 consensus 36.4 37 0.00095 15.9 5.0 51 2-62 1-51 (211)
367 cd00561 CobA_CobO_BtuR ATP:cor 36.3 38 0.00096 15.9 5.0 52 40-94 89-145 (159)
368 COG1436 NtpG Archaeal/vacuolar 36.3 38 0.00096 15.9 7.6 76 1-85 1-81 (104)
369 PRK06904 replicative DNA helic 36.0 38 0.00097 15.8 3.9 43 43-85 330-383 (472)
370 pfam06925 MGDG_synth Monogalac 35.9 38 0.00097 15.8 5.7 61 39-105 82-144 (169)
371 PRK07579 hypothetical protein; 35.9 38 0.00097 15.8 3.0 27 2-28 1-27 (245)
372 cd06347 PBP1_ABC_ligand_bindin 35.7 38 0.00098 15.8 11.3 116 2-121 135-269 (334)
373 TIGR03669 urea_ABC_arch urea A 35.6 39 0.00098 15.8 10.0 79 3-85 134-223 (374)
374 cd06338 PBP1_ABC_ligand_bindin 35.4 39 0.00099 15.8 12.1 80 3-86 142-232 (345)
375 LOAD_USPA consensus 34.8 40 0.001 15.7 5.9 18 3-20 1-19 (135)
376 COG4081 Uncharacterized protei 34.7 40 0.001 15.7 9.5 120 1-123 1-147 (148)
377 PRK06321 replicative DNA helic 34.5 40 0.001 15.7 3.9 66 20-85 304-388 (472)
378 cd01568 QPRTase_NadC Quinolina 34.5 40 0.001 15.7 11.2 94 4-103 153-253 (269)
379 pfam03698 UPF0180 Uncharacteri 34.3 38 0.00098 15.8 2.7 60 15-88 10-69 (80)
380 COG5012 Predicted cobalamin bi 34.2 41 0.001 15.7 7.2 86 15-104 121-212 (227)
381 TIGR02472 sucr_P_syn_N sucrose 33.8 41 0.0011 15.6 3.8 102 11-123 302-413 (445)
382 pfam07537 CamS CamS sex pherom 33.8 37 0.00096 15.9 2.6 21 62-82 150-170 (318)
383 PRK07004 replicative DNA helic 33.7 42 0.0011 15.6 3.6 68 19-86 290-374 (460)
384 PRK07414 cob(I)yrinic acid a,c 33.6 42 0.0011 15.6 5.8 54 38-94 107-165 (178)
385 PRK05986 cob(I)yrinic acid a,c 33.6 42 0.0011 15.6 5.0 52 40-94 108-164 (190)
386 cd04722 TIM_phosphate_binding 33.3 42 0.0011 15.6 10.1 97 5-104 88-198 (200)
387 PRK13168 rumA 23S rRNA 5-methy 33.3 42 0.0011 15.6 9.3 100 2-107 316-422 (440)
388 cd03825 GT1_wcfI_like This fam 33.2 42 0.0011 15.6 4.4 26 95-120 303-328 (365)
389 cd01131 PilT Pilus retraction 33.2 42 0.0011 15.6 3.9 84 2-97 30-121 (198)
390 COG3959 Transketolase, N-termi 33.1 43 0.0011 15.6 4.8 70 49-119 146-226 (243)
391 cd00223 TOPRIM_TopoIIB_SPO TOP 32.9 43 0.0011 15.5 4.4 22 3-24 1-22 (160)
392 PRK13129 consensus 32.8 43 0.0011 15.5 11.2 46 63-111 85-136 (267)
393 TIGR01108 oadA oxaloacetate de 32.7 43 0.0011 15.5 3.7 86 11-102 116-223 (616)
394 COG0313 Predicted methyltransf 32.6 43 0.0011 15.5 9.3 74 5-86 33-116 (275)
395 PRK13227 consensus 32.5 44 0.0011 15.5 5.0 53 62-119 102-165 (228)
396 cd02932 OYE_YqiM_FMN Old yello 32.4 44 0.0011 15.5 7.3 65 36-103 241-317 (336)
397 cd03301 ABC_MalK_N The N-termi 32.0 44 0.0011 15.5 5.4 74 12-85 105-190 (213)
398 PRK05899 transketolase; Review 32.0 44 0.0011 15.5 5.7 52 4-55 182-250 (661)
399 cd06333 PBP1_ABC-type_HAAT_lik 31.9 44 0.0011 15.5 11.2 88 3-94 134-232 (312)
400 pfam09001 DUF1890 Domain of un 31.8 45 0.0011 15.4 7.3 98 15-118 16-137 (138)
401 PRK00652 lpxK tetraacyldisacch 31.6 45 0.0011 15.4 4.2 31 24-54 119-149 (334)
402 cd05013 SIS_RpiR RpiR-like pro 31.5 45 0.0012 15.4 8.6 85 3-92 14-103 (139)
403 PRK07428 nicotinate-nucleotide 31.5 45 0.0012 15.4 11.8 94 5-103 166-266 (285)
404 COG0135 TrpF Phosphoribosylant 31.3 46 0.0012 15.4 6.5 84 10-99 85-176 (208)
405 PRK03094 hypothetical protein; 31.0 46 0.0012 15.4 2.7 58 15-86 10-67 (80)
406 PRK02472 murD UDP-N-acetylmura 31.0 46 0.0012 15.4 7.2 54 45-104 71-144 (450)
407 PRK09984 phosphonate/organopho 31.0 46 0.0012 15.4 4.3 70 14-83 129-210 (262)
408 PRK06823 ornithine cyclodeamin 30.7 47 0.0012 15.3 5.7 38 3-40 154-191 (315)
409 PRK01033 imidazole glycerol ph 30.5 47 0.0012 15.3 8.0 64 36-102 155-223 (253)
410 PRK07259 dihydroorotate dehydr 30.5 47 0.0012 15.3 4.4 70 32-104 100-188 (301)
411 pfam01116 F_bP_aldolase Fructo 30.4 47 0.0012 15.3 10.5 90 9-102 109-228 (283)
412 cd06332 PBP1_aromatic_compound 30.4 47 0.0012 15.3 13.5 90 3-94 135-232 (333)
413 cd02991 UAS_ETEA UAS family, E 30.2 48 0.0012 15.3 7.2 72 37-122 44-115 (116)
414 COG1182 AcpD Acyl carrier prot 30.2 48 0.0012 15.3 4.3 52 2-65 1-57 (202)
415 PRK13943 protein-L-isoaspartat 30.1 28 0.00072 16.6 1.4 92 4-99 102-195 (317)
416 pfam04309 G3P_antiterm Glycero 30.1 48 0.0012 15.3 6.9 61 35-103 105-166 (174)
417 PRK11188 rrmJ 23S rRNA methylt 30.0 43 0.0011 15.5 2.4 29 40-69 111-139 (209)
418 cd03800 GT1_Sucrose_synthase T 30.0 48 0.0012 15.3 4.1 53 61-122 316-368 (398)
419 cd02007 TPP_DXS Thiamine pyrop 30.0 34 0.00086 16.1 1.8 69 49-119 102-176 (195)
420 cd06298 PBP1_CcpA_like Ligand- 29.9 48 0.0012 15.2 8.6 66 10-82 10-84 (268)
421 cd03300 ABC_PotA_N PotA is an 29.6 49 0.0012 15.2 3.9 72 14-85 107-190 (232)
422 COG3640 CooC CO dehydrogenase 29.4 49 0.0013 15.2 7.7 99 11-110 119-222 (255)
423 PRK05748 replicative DNA helic 29.4 49 0.0013 15.2 5.6 69 18-86 279-365 (448)
424 pfam02572 CobA_CobO_BtuR ATP:c 29.3 49 0.0013 15.2 4.4 51 41-94 91-146 (172)
425 PRK06483 short chain dehydroge 29.1 50 0.0013 15.2 8.9 80 1-84 1-82 (236)
426 pfam02423 OCD_Mu_crystall Orni 29.1 50 0.0013 15.2 5.5 39 2-40 154-192 (312)
427 COG0077 PheA Prephenate dehydr 29.0 50 0.0013 15.2 5.9 77 7-84 101-182 (279)
428 PRK03372 ppnK inorganic polyph 29.0 50 0.0013 15.2 10.3 100 2-121 4-124 (303)
429 KOG2335 consensus 28.9 50 0.0013 15.1 8.2 96 7-104 122-232 (358)
430 KOG0780 consensus 28.9 50 0.0013 15.1 7.0 60 35-94 172-233 (483)
431 TIGR01425 SRP54_euk signal rec 28.9 50 0.0013 15.1 4.8 61 35-95 192-254 (453)
432 cd03297 ABC_ModC_molybdenum_tr 28.6 51 0.0013 15.1 4.1 72 14-85 108-191 (214)
433 PRK07773 replicative DNA helic 28.6 51 0.0013 15.1 3.8 43 43-85 310-362 (868)
434 cd06394 PBP1_iGluR_Kainate_KA1 28.5 51 0.0013 15.1 7.9 95 10-108 117-224 (333)
435 TIGR03659 IsdE heme ABC transp 28.5 51 0.0013 15.1 3.5 12 41-52 86-97 (289)
436 TIGR01526 nadR_NMN_Atrans nico 28.4 51 0.0013 15.1 4.2 80 3-86 249-341 (346)
437 cd04740 DHOD_1B_like Dihydroor 28.3 52 0.0013 15.1 4.0 55 46-103 115-184 (296)
438 PRK13116 consensus 28.2 52 0.0013 15.1 11.6 36 75-110 93-134 (278)
439 TIGR00734 hisAF_rel hisA/hisF 27.9 52 0.0013 15.0 4.9 99 3-104 104-221 (230)
440 PTZ00314 inosine-5'-monophosph 27.8 52 0.0013 15.0 9.8 65 37-104 241-306 (499)
441 pfam03830 PTSIIB_sorb PTS syst 27.7 53 0.0013 15.0 4.3 45 2-47 26-73 (151)
442 PRK10867 signal recognition pa 27.7 53 0.0013 15.0 9.1 103 2-104 129-247 (453)
443 cd06274 PBP1_FruR Ligand bindi 27.5 53 0.0014 15.0 8.7 42 11-52 11-61 (264)
444 pfam10672 Methyltrans_SAM S-ad 27.4 53 0.0014 15.0 7.8 53 2-54 146-203 (286)
445 cd03820 GT1_amsD_like This fam 27.4 54 0.0014 15.0 4.6 54 61-122 266-319 (348)
446 COG2804 PulE Type II secretory 27.4 54 0.0014 15.0 5.5 18 85-102 362-379 (500)
447 COG2242 CobL Precorrin-6B meth 27.3 54 0.0014 15.0 4.7 90 3-100 59-154 (187)
448 pfam01884 PcrB PcrB family. Th 27.3 54 0.0014 15.0 6.1 61 36-105 22-82 (231)
449 cd03811 GT1_WabH_like This fam 27.2 54 0.0014 15.0 4.3 51 61-120 277-327 (353)
450 KOG0189 consensus 27.2 54 0.0014 15.0 3.4 68 14-83 34-106 (261)
451 KOG2292 consensus 27.0 54 0.0014 14.9 4.5 46 1-52 556-601 (751)
452 PRK06111 acetyl-CoA carboxylas 26.9 55 0.0014 14.9 4.9 40 1-41 1-40 (449)
453 COG3828 Uncharacterized protei 26.8 21 0.00054 17.3 0.3 60 1-61 2-67 (239)
454 cd04734 OYE_like_3_FMN Old yel 26.8 55 0.0014 14.9 7.1 44 57-103 269-312 (343)
455 cd01139 TroA_f Periplasmic bin 26.7 55 0.0014 14.9 5.5 43 39-85 84-127 (342)
456 cd00381 IMPDH IMPDH: The catal 26.7 55 0.0014 14.9 7.7 62 39-103 99-161 (325)
457 PRK09177 xanthine-guanine phos 26.5 31 0.0008 16.3 1.2 15 12-26 16-30 (156)
458 TIGR02478 6PF1K_euk 6-phosphof 26.5 16 0.00042 17.9 -0.3 106 13-118 486-621 (777)
459 pfam02581 TMP-TENI Thiamine mo 26.5 56 0.0014 14.9 9.0 68 30-102 100-174 (180)
460 cd04962 GT1_like_5 This family 26.4 56 0.0014 14.9 4.3 43 75-121 293-335 (371)
461 PRK13111 trpA tryptophan synth 26.2 56 0.0014 14.9 10.7 47 62-111 74-126 (256)
462 PRK12727 flagellar biosynthesi 25.9 57 0.0015 14.8 10.9 101 3-105 379-491 (557)
463 pfam01497 Peripla_BP_2 Peripla 25.6 58 0.0015 14.8 5.6 74 39-120 53-126 (236)
464 PRK07102 short chain dehydroge 25.5 58 0.0015 14.8 5.9 42 2-43 1-42 (243)
465 cd00452 KDPG_aldolase KDPG and 25.4 58 0.0015 14.8 9.5 95 7-108 10-127 (190)
466 cd01143 YvrC Periplasmic bindi 25.4 58 0.0015 14.8 5.4 72 39-120 53-125 (195)
467 cd06280 PBP1_LacI_like_4 Ligan 25.4 58 0.0015 14.8 7.6 65 11-83 11-84 (263)
468 COG2236 Predicted phosphoribos 25.3 48 0.0012 15.3 1.9 16 3-18 88-103 (192)
469 PRK08006 replicative DNA helic 25.3 59 0.0015 14.8 3.6 68 19-86 302-386 (471)
470 PRK13555 azoreductase; Provisi 25.2 59 0.0015 14.8 4.7 12 2-13 1-12 (208)
471 TIGR00644 recJ single-stranded 25.0 59 0.0015 14.7 4.8 45 16-60 105-153 (705)
472 PRK05973 replicative DNA helic 24.9 59 0.0015 14.7 3.1 41 45-85 146-192 (237)
473 PRK08840 replicative DNA helic 24.8 60 0.0015 14.7 3.9 66 21-86 297-379 (464)
474 cd03296 ABC_CysA_sulfate_impor 24.7 60 0.0015 14.7 3.9 74 12-85 111-196 (239)
475 PRK13136 consensus 24.7 60 0.0015 14.7 11.0 45 63-110 78-127 (253)
476 cd06346 PBP1_ABC_ligand_bindin 24.6 60 0.0015 14.7 12.2 113 3-119 138-266 (312)
477 cd03801 GT1_YqgM_like This fam 24.6 60 0.0015 14.7 4.4 44 75-122 298-341 (374)
478 PRK13125 trpA tryptophan synth 24.6 60 0.0015 14.7 11.6 107 12-122 118-245 (247)
479 COG3854 SpoIIIAA ncharacterize 24.4 53 0.0013 15.0 2.0 80 2-87 170-253 (308)
480 PRK01122 potassium-transportin 24.3 61 0.0016 14.7 5.3 57 58-119 452-508 (684)
481 PRK01659 consensus 24.3 61 0.0016 14.7 7.6 79 37-118 157-246 (252)
482 PRK04161 tagatose 1,6-diphosph 24.3 61 0.0016 14.6 6.9 61 44-104 196-276 (326)
483 cd06283 PBP1_RegR_EndR_KdgR_li 24.2 61 0.0016 14.6 9.2 66 10-82 10-84 (267)
484 KOG2550 consensus 24.1 62 0.0016 14.6 6.2 96 4-102 204-317 (503)
485 PRK13508 tagatose-6-phosphate 24.1 62 0.0016 14.6 8.6 68 45-116 125-192 (309)
486 PRK08099 nicotinamide-nucleoti 24.0 62 0.0016 14.6 8.3 86 2-95 302-399 (411)
487 TIGR03533 L3_gln_methyl protei 23.9 62 0.0016 14.6 7.2 46 4-52 147-195 (284)
488 pfam09243 Rsm22 Mitochondrial 23.9 62 0.0016 14.6 7.5 101 2-107 59-168 (275)
489 PRK06756 flavodoxin; Provision 23.9 62 0.0016 14.6 4.7 91 11-107 5-112 (138)
490 PRK09932 glycerate kinase II; 23.9 62 0.0016 14.6 3.7 71 45-120 283-362 (381)
491 cd06345 PBP1_ABC_ligand_bindin 23.7 63 0.0016 14.6 12.1 84 3-90 145-239 (344)
492 PRK05586 biotin carboxylase; V 23.6 63 0.0016 14.6 4.3 38 1-39 1-38 (447)
493 PRK06141 ornithine cyclodeamin 23.2 64 0.0016 14.5 5.5 40 2-41 150-189 (313)
494 PRK10563 6-phosphogluconate ph 23.1 65 0.0016 14.5 3.7 105 6-118 14-154 (221)
495 PRK07807 inositol-5-monophosph 23.1 65 0.0017 14.5 9.6 66 34-102 227-293 (479)
496 TIGR00587 nfo apurinic endonuc 23.0 58 0.0015 14.8 2.0 21 61-81 270-290 (318)
497 cd02930 DCR_FMN 2,4-dienoyl-Co 23.0 65 0.0017 14.5 6.6 82 11-103 222-303 (353)
498 PRK05693 short chain dehydroge 22.9 65 0.0017 14.5 7.3 54 2-55 1-54 (274)
499 cd01146 FhuD Fe3+-siderophore 22.9 65 0.0017 14.5 3.3 74 39-122 58-131 (256)
500 PRK00861 putative lipid kinase 22.9 65 0.0017 14.5 6.2 52 1-52 1-63 (296)
No 1
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=100.00 E-value=6.9e-39 Score=244.15 Aligned_cols=123 Identities=29% Similarity=0.521 Sum_probs=121.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
|.++||||||++..++.++-.|+..||+|.+|.||++|..+++++.||+|+|||+||+.+|+||||++|+.+.++++|||
T Consensus 1 m~~~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPII 80 (226)
T TIGR02154 1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILLDWMLPGTSGIELARRLRREPETRAIPII 80 (226)
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 98725677082689999999841689469980797999999860799889961478997569999873476331488817
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9992499899999997699889987989899999999974039
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a 123 (123)
|+||.+.+.|....++.|||||++|||++.+|++.|+.+|+.+
T Consensus 81 MLTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCC
T ss_conf 7405556000113113688750367886588999999998316
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=4.8e-34 Score=216.34 Aligned_cols=120 Identities=34% Similarity=0.527 Sum_probs=116.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.|||+||||+.|+++++.+|+..|+.+..|.||.+|++.+++++||+||||++||+|||+|.+++||+.+..+++|||++
T Consensus 669 lrVLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIAl 748 (920)
T PRK11107 669 LTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAV 748 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 74999848899999999999984988999899999999974799978998899999989999999981867898959999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9249989999999769988998798989999999997403
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|++..++++++|+++|+++|++||++.+.|...+.+++..
T Consensus 749 TA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~~~ 788 (920)
T PRK11107 749 TAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWKPG 788 (920)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCC
T ss_conf 7998989999999779993872879999999999986788
No 3
>PRK09581 pleD response regulator PleD; Reviewed
Probab=100.00 E-value=4.2e-33 Score=210.95 Aligned_cols=120 Identities=28% Similarity=0.553 Sum_probs=116.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
|+.|||||||++.++..++..|+..||+|.+|.||++|++.+.+++||+|++|+.||+|||+|+|++||+.+...++|||
T Consensus 1 M~~rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVI 80 (457)
T PRK09581 1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVV 80 (457)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 99719999498999999999998789999998999999999971899989992877999999999999659888998499
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 9992499899999997699889987989899999999974
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
++|+.+......++++.|+++|+.||++...|+.+++..+
T Consensus 81 vlTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~ 120 (457)
T PRK09581 81 MVTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 9978999999999986488789989999899999999999
No 4
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.4e-32 Score=207.98 Aligned_cols=118 Identities=25% Similarity=0.566 Sum_probs=113.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.+|||||||+.|+++++.+|+..|+++.+|.||.||++.+++++||+|++|++||+|||+|++++||+.. .++|||++
T Consensus 825 lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EALe~l~~~~fDLILMDIqMPvMDGyEaTr~IRe~~--~~iPIIAL 902 (947)
T PRK10841 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGV 902 (947)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCC--CCCEEEEE
T ss_conf 8899990789999999999997699999989999999997569989899708889980999999998089--84949999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9249989999999769988998798989999999997403
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
||+...+++++|+++|+++||+||++.+.|.+++.++.++
T Consensus 903 TAnA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~Y~~~ 942 (947)
T PRK10841 903 TANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 942 (947)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 3899989999999879999997989799999999999877
No 5
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=100.00 E-value=6.1e-32 Score=204.26 Aligned_cols=122 Identities=26% Similarity=0.433 Sum_probs=118.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
|++|||+||||+..++.++..|+..||+|..|.+|++|++.+.++.||+|++|++||++||++++++||+....+++|||
T Consensus 1 M~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII 80 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 99719999599999999999999779999998999999999852899899997899887633587887750246897589
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
++|+.+...+..++++.|+++|++|||++++|+.+|+.++++
T Consensus 81 ~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 995566657799998769876520899989999999999712
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.7e-31 Score=201.76 Aligned_cols=120 Identities=30% Similarity=0.536 Sum_probs=112.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC-CCEE
Q ss_conf 877899539989999999999978989999889799999998279989999504129695999999982857689-9599
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE-IPVI 80 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~-ipii 80 (123)
..|||+||||+.|+.+++.+|+.+|+.|.+|.||.+|++.++.++||+|++|++||+|||||++++||+...... +|||
T Consensus 525 ~lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~PII 604 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPPLV 604 (779)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 88189986889999999999997599999989999999985069999899828999997899999998425768999279
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
++|++... ++++++++|+++||+||++.+.|.+.+.++++.
T Consensus 605 ALTAna~~-d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 605 ALTANVLK-DKQEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEECCCCH-HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 88187417-699999769984751889899999999998464
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.97 E-value=7.5e-31 Score=197.99 Aligned_cols=116 Identities=22% Similarity=0.445 Sum_probs=110.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
-+|||||||+.||.+++.+|+..|+.+..|.||.+|++.+++++||+|++|++||+|||+|++++||+.. ..+|||++
T Consensus 959 l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~~fDlILmDi~MP~MDG~e~tr~IR~~~--~~~PIial 1036 (1197)
T PRK09959 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGL 1036 (1197)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCC--CCCCEEEE
T ss_conf 8799979989999999999998399999989999999997669999999879789998999999996469--86948999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 92499899999997699889987989899999999974
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
|++..+++.++|+++|+++||.||++.+.|.+.+.++.
T Consensus 1037 TA~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~~~ 1074 (1197)
T PRK09959 1037 TANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 79999999999997699834518898999999998531
No 8
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.97 E-value=1.3e-30 Score=196.62 Aligned_cols=120 Identities=25% Similarity=0.448 Sum_probs=115.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 7789953998999999999997898-999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~-~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
-||||||||+..|+.++.+|+.+|| .+.+|+||.+|++.++++.||+|++|++||++||+|++++||+....+++|||+
T Consensus 6 lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii~ 85 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85 (129)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 89999979899999999999986997899989999999999858999999818999998999999998577778996899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+........++.++|+++|+.|||++++|.+++++++.+
T Consensus 86 ~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r 126 (129)
T PRK10610 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 98868999999999869988998989999999999999976
No 9
>PRK10693 response regulator of RpoS; Provisional
Probab=99.97 E-value=3.7e-30 Score=194.02 Aligned_cols=118 Identities=25% Similarity=0.443 Sum_probs=110.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
.||||||||++..|+.++.+|+.+||+|..|.||++|++.+.++.||+|++|+.||+|||+|++++||+.. ..+|||+
T Consensus 7 gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~--~~~PVIv 84 (337)
T PRK10693 7 GKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRG--DQTPVLV 84 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCEEEE
T ss_conf 99899994999999999999997899999989999999998658999999968999999899999999858--9964999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf 99249989999999769988998798-98999999999740
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIG 121 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~~~l~ 121 (123)
+|+++...+..+++++|++|||+||| +..+|.+++.+.+.
T Consensus 85 lTa~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98689999999999749958997896999999999998751
No 10
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.97 E-value=1.1e-29 Score=191.28 Aligned_cols=119 Identities=26% Similarity=0.411 Sum_probs=114.0
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 987-7899539989999999999978989999889799999998279989999504129695999999982857689959
Q gi|254780476|r 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 1 m~k-kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|.| |||||||++..|+.++..|+..||+|.+|.||.+|++.+.++.||+|++|+.||++||+++++++|+.. ..+||
T Consensus 1 M~k~kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~--~~~pv 78 (469)
T PRK10923 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPV 78 (469)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCCE
T ss_conf 9999799994989999999999987799899989999999998669999998789999989999999998429--89978
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++|+++......++++.|+.+||.||+++++|..++++++.
T Consensus 79 IviT~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~ 120 (469)
T PRK10923 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred EEEECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 999899998999999855704430088999999999999999
No 11
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.97 E-value=1.8e-31 Score=201.48 Aligned_cols=117 Identities=24% Similarity=0.483 Sum_probs=113.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 89953998999999999997898999988979999999827998999950412969599999998285768995999992
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~ 84 (123)
||||||++-..++++.-|+..||.+..++||.++|.++.++.||+||||++||+||||+++++||+.. +..||+++||
T Consensus 1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~--~~~PVl~LTA 78 (219)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSG--KETPVLFLTA 78 (219)
T ss_pred CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC--CCCCEEEEEC
T ss_conf 96763086026765305201234798877686247543688830899632588950689999984078--9873488833
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 499899999997699889987989899999999974039
Q gi|254780476|r 85 FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a 123 (123)
.+.-.|+.+.+++||+|||.|||++.+|+++|++.|++|
T Consensus 79 ~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~ 117 (219)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRS 117 (219)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 788454353011478654137877603799999876775
No 12
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.97 E-value=6.9e-30 Score=192.46 Aligned_cols=119 Identities=24% Similarity=0.490 Sum_probs=113.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+.||||+||||+..++.+...|+..||.|..|.+|.+|++.+.++.||+|++|++||++||+++|++||+. .++|||
T Consensus 5 ~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~LP~~dG~~l~~~iR~~---~~~PII 81 (240)
T CHL00148 5 SKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPII 81 (240)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCC---CCCCEE
T ss_conf 99829999398999999999999789999998999999999974799999997999988866305414037---995489
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
++|+.+...+...+++.|+++|++|||++++|+.+|+.+++.
T Consensus 82 ~LTa~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr 123 (240)
T CHL00148 82 MLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 981678989999999769978952784479999999999866
No 13
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.97 E-value=1.9e-29 Score=189.87 Aligned_cols=117 Identities=18% Similarity=0.377 Sum_probs=111.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 778995399899999999999789899998897999999982-7998999950412969599999998285768995999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
.|||+||||+.|+.+++.+|+..|+.|..|.||.+|++.+++ ++||+|++|++||+|||+|++++||+. ...+|||+
T Consensus 682 lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~--~~~~pIIA 759 (912)
T PRK11466 682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ--YPSLVLIG 759 (912)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC--CCCCCEEE
T ss_conf 8699994878899999999998699899989999999999718998589876999999899999999861--99997899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9924998999999976998899879898999999999740
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+|++..+++.+++..+|+++|+.||++++.|.+.+.+++.
T Consensus 760 lTA~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~ 799 (912)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (912)
T ss_pred ECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 7798788999999976998775498999999999999846
No 14
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.97 E-value=5.9e-29 Score=187.09 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=113.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
..|||+||||+..++.+...|+..||.|..+.+|.+|++.+.++.||+|++|++||++||++++++||+.. .++|||+
T Consensus 3 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~--~~~pII~ 80 (229)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFH--PALPVIF 80 (229)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCCEEEE
T ss_conf 99999996999999999999998899999989999999999718998999738899987688999999708--9972999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+.+...+...+++.|+++|+.|||++++|+.+|+..++.
T Consensus 81 lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR 121 (229)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 83678989999999759987730874289999999999976
No 15
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.97 E-value=3.8e-29 Score=188.16 Aligned_cols=117 Identities=21% Similarity=0.464 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|||+||||+..++.++.+|+..||+|..|.||.+|++.+..+.||+|++|++||++||+++|++||+.. .++|||++|
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~--~~~PII~Lt 79 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLT 79 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCEEEEEE
T ss_conf 899993999999999999987899999989999999998518999999889999998720435677616--796099994
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+.+...+..++++.|+++|+.|||++++|+.+++..++.
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr 118 (226)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (226)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 458988999999769968863687679999999999662
No 16
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.97 E-value=3e-29 Score=188.79 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=112.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|||+||||+..++.++..|+..||+|..|.+|.+|++.+.+++||+|++|++||++||++++++||+.. ..+|||++|
T Consensus 2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~--~~~PII~lt 79 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKG--QREPVLILT 79 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHC--CCCCEEEEE
T ss_conf 899993899999999999998799999989999999998628969999979999998563101046527--888789980
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+.+...+..+++++|+++|+.|||++++|+.+|+..++.
T Consensus 80 a~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr 118 (219)
T PRK10336 80 ARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 689999999999769988868897679999999999611
No 17
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.97 E-value=1.3e-29 Score=190.83 Aligned_cols=118 Identities=17% Similarity=0.291 Sum_probs=112.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|+|||+||||+..++.++..|+..||+|..|.+|.+|++.+.++.||+|++|++||++||+++|++||+. .++|||+
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PiI~ 77 (240)
T PRK10701 1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPK---WSGPIVL 77 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCC---CCCCEEE
T ss_conf 9989999799999999999998879999998999999999861799999992899767887876311025---8987899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+.....+...+++.|+++|++|||++.+|+.+|+..+++
T Consensus 78 lta~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (240)
T PRK10701 78 LTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 94057578899999768877641799879999999999965
No 18
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.97 E-value=4.3e-29 Score=187.89 Aligned_cols=111 Identities=33% Similarity=0.656 Sum_probs=107.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 89953998999999999997898999988979999999827998999950412969599999998285768995999992
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~ 84 (123)
||+||||+.+|+.++.+|+.+||++.++.||++|++.+++++||+|++|++||++||++++++||+.. +++|||++|+
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~--~~~piI~~T~ 78 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRP--PTTPVIVLTA 78 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCEEEEEEC
T ss_conf 09998989999999999998899999989999999999847998999953689950157999997359--9980999975
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 499899999997699889987989899999999
Q gi|254780476|r 85 FAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
+.......++.+.|+++|+.||+++++|+++|+
T Consensus 79 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 79 HGDEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 089999999997798779949999899998529
No 19
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.96 E-value=8.1e-29 Score=186.30 Aligned_cols=116 Identities=26% Similarity=0.467 Sum_probs=111.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|||+||||+..++.++..|+..||+|.+|.||.+|++.+.++.||+|++|++||++||++++++||+. .++|||++|
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~---~~~pII~lt 78 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLT 78 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC---CCCCEEEEE
T ss_conf 89999698999999999999889999998999999999852899999984999873689999999856---886489995
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+.+...+..++++.|+++|+.|||++++|+.+++..+++
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 655657899999839877620897789999999999641
No 20
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.96 E-value=7.8e-29 Score=186.40 Aligned_cols=118 Identities=25% Similarity=0.467 Sum_probs=113.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
++|||||||++..|+.++..|+..||+|.+|.||.+|++.+.+++||+|++|+.||++||++++++||+.. .++|||+
T Consensus 4 ~~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~DlvllDi~mP~~~Glell~~ir~~~--p~~pvIv 81 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPVIL 81 (457)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf 99289983999999999999997799899989999999998668989999828799999999999998209--8993899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9924998999999976998899879898999999999740
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+|+++......++++.|+.+|+.|||++++|..++++++.
T Consensus 82 lTa~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~ 121 (457)
T PRK11361 82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9689998999999975966325699999999999999999
No 21
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.96 E-value=1e-28 Score=185.68 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=112.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.||||||||+..++.++..|+..||.|..|.+|.+|++.+..+.||+|++|++||++||++++++||+.. ..+|||++
T Consensus 6 ~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~--~~~pII~L 83 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQN--NPTPIIML 83 (239)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHC--CCCCEEEE
T ss_conf 7899990999999999999998899999989999999999758998999878998888734677787505--78778999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9249989999999769988998798989999999997403
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|+.+...+..++++.|+++|++|||++++|+.+|+..++.
T Consensus 84 Ta~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR 123 (239)
T PRK09468 84 TAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 4667878999999769868855899989999999999863
No 22
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.96 E-value=3.4e-29 Score=188.47 Aligned_cols=117 Identities=22% Similarity=0.465 Sum_probs=110.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|+|||+||||+..++.++..|+..||+|..|.+|++|++.+. +.||+|++|++||++||++++++||+. .++|||+
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PII~ 76 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT---HQTPVIM 76 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC---CCCCEEE
T ss_conf 988999969899999999999888999999899999999964-898999991899988867230124407---8887899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+.+...+...+++.|+++|+.|||++++|+.+|+.+++.
T Consensus 77 lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR 117 (232)
T PRK10955 77 LTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 80556768899999769757633899989999999999761
No 23
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.96 E-value=4e-29 Score=188.04 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=112.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|+|||+||||+..++.++..|+..||+|..|.+|++|+..+..+.||+|++|++||++||++++++||+. .++|||+
T Consensus 1 M~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~---~~~pII~ 77 (225)
T PRK10529 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVIV 77 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC---CCCCEEE
T ss_conf 9989999798999999999999889999997999999998611799899980788888876331000127---9987899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+.+...+...+++.|+++|+.|||++++|..+++..++.
T Consensus 78 lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (225)
T PRK10529 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 95468989999999769876540785459999999999714
No 24
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.96 E-value=5.4e-29 Score=187.31 Aligned_cols=118 Identities=24% Similarity=0.402 Sum_probs=113.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
|++|||+||||+..++.+...|+..||+|..|.||++|++.+.++.||+|++|+.||++||++++++||+.. ++|||
T Consensus 1 M~~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~~---~~piI 77 (224)
T PRK10766 1 MSYHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRS---TVGII 77 (224)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC---CCCEE
T ss_conf 997199991999999999999998799999989999999999608999999889999887661376763047---85568
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99924998999999976998899879898999999999740
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
++|+.+...+...++++|+++|+.||+++++|+.+|+..++
T Consensus 78 ~lta~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allr 118 (224)
T PRK10766 78 LVTGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLW 118 (224)
T ss_pred EECCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 63355898999999984941451399988999999999972
No 25
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.96 E-value=2.7e-28 Score=183.32 Aligned_cols=113 Identities=34% Similarity=0.626 Sum_probs=109.1
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99539989999999999978989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
|||||++.+|+.++.+|+.+||++.+|.||.+|++.+++++||+|++|++||++||++++++||+. .+++|||++|++
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~--~~~~pvI~lT~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTAH 78 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH--CCCCCEEEEECC
T ss_conf 989272999999999999889999998999999999875799999977999898726999999985--899959999787
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99899999997699889987989899999999974
Q gi|254780476|r 86 AMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 86 ~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
...+...++.+.|+++|+.||++.++|.+++++++
T Consensus 79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 89999999997689789969899999999999869
No 26
>PRK11173 two-component response regulator; Provisional
Probab=99.96 E-value=4.1e-28 Score=182.24 Aligned_cols=118 Identities=21% Similarity=0.416 Sum_probs=111.5
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 987-7899539989999999999978989999889799999998279989999504129695999999982857689959
Q gi|254780476|r 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 1 m~k-kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|.+ |||+||||+..++.++.+|+..||.|..|.||.+|++.+..+.||+|++|++||++||++++++||+.. ++||
T Consensus 1 m~~~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~~---~~pi 77 (237)
T PRK11173 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQA---NVAL 77 (237)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCC---CCCE
T ss_conf 9999899995989999999999998899999989999999998638998999938999887303555665168---8478
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++|+.....+...++++|+++|+.||+++++|...++..+.
T Consensus 78 I~lta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~ 119 (237)
T PRK11173 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999432577889999976976788789887999999999986
No 27
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.96 E-value=5.6e-28 Score=181.48 Aligned_cols=119 Identities=26% Similarity=0.517 Sum_probs=114.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.|||+|||++..++.+...|+..||.+..+.+|.+|++.+... ||+|++|++||++||+++|++||+. ....+|||++
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi~L 78 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPIIVL 78 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHC-CCCCCCEEEE
T ss_conf 9899991888999999999987597899978989999997269-9999998899985689999999851-6899988999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 92499899999997699889987989899999999974039
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a 123 (123)
|+.+...+....+++|+++|++|||++.+|+.+++.+++.+
T Consensus 79 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 79 TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ECCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 66872888999997563423348899899999999996736
No 28
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.96 E-value=7.8e-28 Score=180.67 Aligned_cols=117 Identities=25% Similarity=0.459 Sum_probs=112.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
-+||||||++..+..++.+|+..||+|.+|.+|.+|++.+.++.||+|++|+.||++||+++++++|+.. .++|||++
T Consensus 6 ~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~~--p~~pvIvi 83 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALN--PAIPVLIM 83 (441)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf 8599983989999999999997799899989999999998648999999889999998999999998429--89828999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 924998999999976998899879898999999999740
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|+++......++++.|+.+|+.||+++++|...|++++.
T Consensus 84 T~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~ 122 (441)
T PRK10365 84 TAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred ECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 699998999999982851234078889999999999999
No 29
>PRK13557 histidine kinase; Provisional
Probab=99.96 E-value=8.8e-28 Score=180.35 Aligned_cols=118 Identities=23% Similarity=0.377 Sum_probs=110.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997898999988979999999827-998999950412-9695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQ-EISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-~~dlillD~~mp-~~dG~el~~~ir~~~~~~~ipi 79 (123)
.++|||||||+.+|++++.+|+.+||.|.+|.||.+|++++.++ +||+|++|+.|| +|||+++++++|+. ...+||
T Consensus 413 ~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~--~p~i~i 490 (538)
T PRK13557 413 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRR--QPKIKV 490 (538)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHH--CCCCEE
T ss_conf 725899679899999999999976999999899999999996099988998877799998899999999853--899839
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++|++............|..+||.|||+.++|+.+|+++|.
T Consensus 491 i~~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 532 (538)
T PRK13557 491 LLTTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLD 532 (538)
T ss_pred EEEECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 999799877889977528998888198999999999999867
No 30
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.96 E-value=2.2e-27 Score=178.05 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 7789953998999999999997-8989-9998897999999982799899995041296959999999828576899599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIET-SGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~-~g~~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
-|||||||++..++.++.+|+. .||. +..|.||.+|++.+++++||+|++|+.||++||++++++||+.. .++|||
T Consensus 5 i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~--~~~~VI 82 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAH--YPGDVV 82 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
T ss_conf 869999598999999999997289954999989999999999735999999828989997999999999648--799889
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99924998999999976998899879898999999999740
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
++|+++..+...++++.|+.+||.|||++++|.+++.++-.
T Consensus 83 ~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~ 123 (225)
T PRK10046 83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 99689999999999974998310289999999999999999
No 31
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.96 E-value=2.5e-27 Score=177.78 Aligned_cols=117 Identities=18% Similarity=0.378 Sum_probs=110.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|||||+||||+..++.+..+|+..||.|..|.+|.+|++.+..+.||++++|++||++||++++++||+. .++|+|+
T Consensus 1 M~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~---~~~piii 77 (241)
T PRK13856 1 MKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIII 77 (241)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC---CCCCEEE
T ss_conf 9989999698999999999998779999998999999999865999999996999876613455564036---9973699
Q ss_pred EEEC-CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9924-998999999976998899879898999999999740
Q gi|254780476|r 82 VTAF-AMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 82 ~t~~-~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+|+. ....+...+++.|+++|+.|||++++|+.+++..++
T Consensus 78 lt~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lr 118 (241)
T PRK13856 78 ISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 97267878999999876998899777677799999999987
No 32
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.95 E-value=1.3e-27 Score=179.33 Aligned_cols=118 Identities=29% Similarity=0.434 Sum_probs=112.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
+.|||+|||++..++.++..|+..||.|..|.+|.+|++.+.++.||+|++|++||++||+++++++|+.+ ++|||+
T Consensus 10 ~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~~---~~piI~ 86 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFS---DIPIVM 86 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCC---CCCEEE
T ss_conf 88799992989999999999998899999989999999999737998999879998887763211221157---646899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+.....+...++++|+++|+.||+++++|+.+++.+++.
T Consensus 87 lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr 127 (240)
T PRK10710 87 VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred ECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 81678889999999869987600776538999999999845
No 33
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.95 E-value=3.6e-27 Score=176.86 Aligned_cols=117 Identities=23% Similarity=0.354 Sum_probs=112.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|||+|||++..++.++..|+..||.|..|.+|.+|++.+..+.||+|++|++||++||+++++++|+.. ..+|||++|
T Consensus 2 kILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~--~~~pII~lt 79 (222)
T PRK10643 2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKK--YTLPVLILT 79 (222)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC--CCCCEEEEE
T ss_conf 799992889999999999997899999989999999999748998999968889986226899998348--998899982
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+.+...+...++++|+++|+.||+++++|+.+++.+++.
T Consensus 80 ~~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr 118 (222)
T PRK10643 80 ARDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRR 118 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 103678899999759977643887689999999999703
No 34
>KOG0519 consensus
Probab=99.95 E-value=1.5e-27 Score=178.95 Aligned_cols=119 Identities=30% Similarity=0.533 Sum_probs=114.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 877899539989999999999978989999889799999998-2799899995041296959999999828576899599
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~-~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
.+|||+||||..++++...+|+..|.++.++.+|.||++.++ .+.||+||+|++||+|||+|.+++||+... .++|||
T Consensus 666 g~~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pIv 744 (786)
T KOG0519 666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPIV 744 (786)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCEE
T ss_conf 6765785587101999998999739645742886999986389986327999757755554999999987516-788779
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99924998999999976998899879898999999999740
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
++||...+...++|++.|+++||.|||+.+.|...+.+++.
T Consensus 745 AlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519 745 ALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEECCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 97468757889999982876467463318999999999733
No 35
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.95 E-value=2.9e-27 Score=177.39 Aligned_cols=117 Identities=22% Similarity=0.429 Sum_probs=112.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|||+||||+..++.+...|+..||+|..|.+|.+|++.+.++.||++++|++||++||++++++||+.. .++|||++|
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~--~~~piI~lt 79 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLT 79 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCC--CCCCEEEEE
T ss_conf 899995989999999999997899999989999999999757998999979998988640012011048--987689994
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 249989999999769988998798989999999997403
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+.....+..+++++|+++|+.||++.++|..+++.+++.
T Consensus 80 a~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr 118 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 445677899999869988641897778999999999665
No 36
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.95 E-value=9.1e-27 Score=174.52 Aligned_cols=120 Identities=18% Similarity=0.299 Sum_probs=113.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
...+||||||++..|+.++.+|+..||.|..+.+|+++++.+.+.+||++++|++||++||++++++||+.. .++|||
T Consensus 2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~--p~~~vi 79 (202)
T PRK09390 2 TKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARG--SPLPVI 79 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCC--CCCCEE
T ss_conf 999799984999999999999998899899989999999997657979998779999989607999987228--998679
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
++|++.......++++.|+++|+.||+++++|.++|++++..
T Consensus 80 vlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 997457488889999829464455999999999999999971
No 37
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.94 E-value=4.2e-26 Score=170.72 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=108.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 87789953998999999999997-898999-988979999999--82799899995041296959999999828576899
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELA--RQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l--~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
|-||||||||+..++.++.+++. .||.+. +|+++.+|++.+ .+.+||+|++|+.||++||+|+++.||+.. .++
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~--~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS 78 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf 987999929899999999998518990899998999999999965799985899789999997899999999858--998
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 59999924998999999976998899879898999999999740
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|||++|+....+...+++..|+.+||.|||++++|.+++.++..
T Consensus 79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~ 122 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 19999726889999999983950304899999999999999999
No 38
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.94 E-value=2.2e-26 Score=172.35 Aligned_cols=120 Identities=25% Similarity=0.474 Sum_probs=112.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 77899539989999999999978-98999-98897999999982799899995041296959999999828576899599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
=||+|+|||...+++|+++|+.+ .++|. +|.||.||++++++++||+++||+=||.+||+-+++++++........||
T Consensus 3 Iri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi 82 (270)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVI 82 (270)
T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 28999828889999999998528983899741476899999960899899951504300057999998898874489588
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|+||++++.-.+++.++|||.|+.|||+.+.|-.+|++..+.
T Consensus 83 ~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 83 MLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred EEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 852237558999999728981566504178899999986246
No 39
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-25 Score=167.18 Aligned_cols=120 Identities=23% Similarity=0.457 Sum_probs=114.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
|+.+||+|||++..|..+...|+.+||.|.++.++.+|++.+.+..||+|++|+.||++||+++++++++.. ..+|||
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~pVI 80 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRD--PDLPVI 80 (464)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
T ss_conf 768789992978999999999997697489858999999998628999899816789996699999999638--999889
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
++|+++.-....++.+.|+-+|+.|||+++.|+..+++++..
T Consensus 81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 982889999999998557033321899999999999999987
No 40
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-25 Score=167.30 Aligned_cols=119 Identities=32% Similarity=0.537 Sum_probs=110.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHH--HCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 8778995399899999999999--7898999-988979999999827998999950412969599999998285768995
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIE--TSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~--~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
|-|||||||.+..|+-++.++. .+|+++. +|+||.+|++.+++++||+|++|++||+|||+++.+.+|+. ..++-
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~--~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQ--SPDTE 78 (475)
T ss_pred CEEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCE
T ss_conf 9139996672999999998488563697578751457999999873499789981578887579999999974--99853
Q ss_pred EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99999249989999999769988998798989999999997403
Q gi|254780476|r 79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|++||++.-+...++++.|+.+||.||++.++|.+++.++.++
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf 99984642058999998618521220769899999999999999
No 41
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.94 E-value=4.1e-26 Score=170.77 Aligned_cols=117 Identities=25% Similarity=0.443 Sum_probs=113.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC------
Q ss_conf 78995399899999999999789899998897999999982-79989999504129695999999982857689------
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQE------ 76 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~------ 76 (123)
+||+||||+.|..+-+.+|++.|+.|..|.||++|++++.+ +.||++++|++|||.||..|.+++|+....++
T Consensus 763 ~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p 842 (1052)
T TIGR02956 763 RVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEP 842 (1052)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 13246447477999999984279447208549999999854887675455157889865678999999997320444567
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 95999992499899999997699889987989899999999974
Q gi|254780476|r 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
+|.|++||+-..++..+..++||++||.||+..++|...|.++|
T Consensus 843 ~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 843 VKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 77222113344776999975302663479987788999999987
No 42
>PRK13435 response regulator; Provisional
Probab=99.93 E-value=3.8e-25 Score=165.22 Aligned_cols=113 Identities=28% Similarity=0.413 Sum_probs=102.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 7789953998999999999997898999-988979999999827998999950412-96959999999828576899599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQ-EISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp-~~dG~el~~~ir~~~~~~~ipii 80 (123)
=|||||||++..+..++.+|+.+||++. +|.+|++|++.+++++||++++|++|| +++|+++++++++.+ .+|||
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~~---~ipvI 78 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSIDG---GVEVI 78 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCC---CCCEE
T ss_conf 789998998999999999999879979997599999999976599989997887899998999999998759---98389
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99924998999999976998899879898999999999740
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
++|++. +......+|+.+|+.|||++++|.++++++++
T Consensus 79 ~lTa~~---d~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~ 116 (141)
T PRK13435 79 FMTANP---ERVGHDFAGALGVIAKPYSLRQVARALSYVAA 116 (141)
T ss_pred EEECCH---HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 997779---98601345998589899998999999999997
No 43
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=1e-24 Score=162.75 Aligned_cols=118 Identities=31% Similarity=0.618 Sum_probs=114.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982-85768995999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE-DSELQEIPVIA 81 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~-~~~~~~ipii~ 81 (123)
-+||+|||.+.++..++..|...||.+.+|.+|++|+++..+++||++++|++||+|||+|+|++|++ +|.+..+|+++
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~ 94 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVIL 94 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 14889658666899999999742641464147507788751168856776425777659999999872497656532599
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 992499899999997699889987989899999999974
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
+|+++...+..++.+.|+++|+.||+++.+|..+++.++
T Consensus 95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 860587699999997247777528898899999999999
No 44
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.92 E-value=7e-24 Score=157.95 Aligned_cols=104 Identities=23% Similarity=0.485 Sum_probs=94.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 9877899539989999999999978-98999-988979999999827998999950412969599999998285768995
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
|+-|||||||++..|+.++.+|+.. +++|. +|.||.+|++.+++++||+|++|++||+|||+|++++|++.. .+|
T Consensus 1 MkirVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~---p~p 77 (345)
T PRK00742 1 MKIRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALR---PTP 77 (345)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC---CCC
T ss_conf 98269999298899999999997289908999989999999998860999999837889998799999999758---987
Q ss_pred EEEEEECCCH--HHHHHHHHCCCCEEEECCC
Q ss_conf 9999924998--9999999769988998798
Q gi|254780476|r 79 VIAVTAFAMK--GDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 79 ii~~t~~~~~--~~~~~~~~~g~~~~l~KPi 107 (123)
|||+|+.... ....++++.|+.+|+.||-
T Consensus 78 VimvSs~~~~~~~~~~~Al~~GA~D~i~KP~ 108 (345)
T PRK00742 78 VVMVSSLTERGAEITLEALELGAVDFVPKPF 108 (345)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 7999722555659999999759224895788
No 45
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.92 E-value=3.3e-24 Score=159.79 Aligned_cols=117 Identities=23% Similarity=0.383 Sum_probs=112.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 89953998999999999997898999988979999999827-99899995041296959999999828576899599999
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|+|||||...|-++..-|+..|+.|.+..|+..+++.+..+ .||+|+.|+.||++||++++.+||+. ...+|||++|
T Consensus 1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~--~P~LPVIvM~ 78 (471)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKR--HPKLPVIVMT 78 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC--CCCCCEEEEC
T ss_conf 95776471899999999966695453113189999998447999879861226882489999999850--8999779871
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 2499899999997699889987989899999999974039
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a 123 (123)
+++.-.....+.+.|+-.||.|||+.++....+.|++.+.
T Consensus 79 A~~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~ 118 (471)
T TIGR01818 79 AHSDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 118 (471)
T ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 3067899999973583021769876688999999861030
No 46
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-23 Score=155.52 Aligned_cols=121 Identities=21% Similarity=0.453 Sum_probs=116.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
.+|||+|||+...++.++.+|...|+.+..+.+|.+|+..+.+.+||+|++|+.||++|||++|+++|+....+.+|||+
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~ 211 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIIL 211 (435)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 75089974807799999999875363366515989999997468985899955787667899999972444445663899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+|+.+......++++.|+++|+.||+...+|..++++.+.+
T Consensus 212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred EECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 95266347899999768851673477879999999999985
No 47
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.90 E-value=1.6e-22 Score=150.06 Aligned_cols=102 Identities=24% Similarity=0.429 Sum_probs=91.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 77899539989999999999978-98999-98897999999982799899995041296959999999828576899599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
-|||||||++..|+.++++|+.. +++|. +|.||.+|++.+++.+||+|++|++||+|||+|++++|++.. .+|||
T Consensus 2 irVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~---p~PVi 78 (340)
T PRK12555 2 MNVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRR---PCPVL 78 (340)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC---CCCEE
T ss_conf 889999098899999999996099948999989999999998861999999727889998799999999878---99869
Q ss_pred EEEECCCH--HHHHHHHHCCCCEEEECCC
Q ss_conf 99924998--9999999769988998798
Q gi|254780476|r 81 AVTAFAMK--GDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 81 ~~t~~~~~--~~~~~~~~~g~~~~l~KPi 107 (123)
|+|+.... ....++++.|+.+|+.||-
T Consensus 79 mvSs~~~~~~~~~~~AL~~GA~D~i~KP~ 107 (340)
T PRK12555 79 IVSSLTEAGASITYEALGAGALDAVDKPK 107 (340)
T ss_pred EEEECCCCCHHHHHHHHHCCHHHEEECCC
T ss_conf 98503565769999999779776684788
No 48
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.89 E-value=8.1e-22 Score=146.09 Aligned_cols=116 Identities=18% Similarity=0.348 Sum_probs=108.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 789953998999999999997898999-9889799999998279989999504129695999999982857689959999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
|||||||++..|+.++.+|+..++++. ++.+|.++++.+..++||++++|+.||+++|++++++||+. ...+||+++
T Consensus 2 ~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~--~~~~~viv~ 79 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGIIIIV 79 (204)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--CCCEEEEEE
T ss_conf 899986989999999999986899899997999999999874397999995899999841678889872--798059999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 924998999999976998899879898999999999740
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++.......++.+.|+++|+.|+...++|.++|+.+..
T Consensus 80 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~ 118 (204)
T PRK09958 80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred ECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 724652114433526863799789999999999999977
No 49
>PRK09483 response regulator; Provisional
Probab=99.89 E-value=1.7e-21 Score=144.26 Aligned_cols=118 Identities=24% Similarity=0.431 Sum_probs=109.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|-|||||||++..|+.++.+|+.. ++++. ++.++.++++.++.++||++++|+.||+++|++++++|++.. ..+||
T Consensus 1 Mi~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~--p~~~v 78 (216)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRST--PDVKI 78 (216)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC--CCCCE
T ss_conf 9589998499999999999997489958999989999999999855999999868898987523778887408--99857
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+++|++.......++++.|+++|+.|+..+++|.++|+.+..
T Consensus 79 ivls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~ 120 (216)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (216)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 863056632889999974887899479999999999999985
No 50
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.88 E-value=7.8e-22 Score=146.19 Aligned_cols=117 Identities=18% Similarity=0.376 Sum_probs=108.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+-|||||||++..|+.++.+|+.. ++.+. +|.++.+|++.+..++||++++|+.||+++|++++++||+. ...+||
T Consensus 6 pirVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~~pDlvllDl~lp~~~G~~~~~~l~~~--~~~~~i 83 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK--SLSGRI 83 (216)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC--CCCCCE
T ss_conf 978999839999999999999758993899998999999999870799999995999998887642323345--788746
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99992499899999997699889987989899999999974
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
|++|++.......++++.|+++|+.||.++++|.++|+.+.
T Consensus 84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~ 124 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAA 124 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 76305541889999996698789837899999999999998
No 51
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.88 E-value=1.6e-21 Score=144.40 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=108.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997-898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+-||+||||++..|+.++.+|+. .++++. ++.++.++++.+..++||++++|+.||+++|+++++.||+.. ..+||
T Consensus 6 pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~--p~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDG--VTAQI 83 (215)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC--CCCCE
T ss_conf 7579998398999999999997589928999989999999998644998999808998998741233565418--87736
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+++|++..+....++++.|+++|+.||.++++|+++|+++..
T Consensus 84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~ 125 (215)
T PRK10403 84 IILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 886324323678998746876688489999999999999984
No 52
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-20 Score=139.70 Aligned_cols=116 Identities=22% Similarity=0.431 Sum_probs=107.3
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 789953998999999999997-898999-988979999999827998999950412969599999998285768995999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
+|||||||+...++-+++++. .||.+. +|.++++|..++.+..||+|++|..||+.+|+++++.+|+.. ..+-||+
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~DVI~ 79 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQH--YPVDVIV 79 (224)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCC--CCCCEEE
T ss_conf 28997086589999999997389953898606499999999840899799960267985077999998468--9978899
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9924998999999976998899879898999999999740
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+|+.+.......++..|+.|||.|||..++|-+++.++..
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred EECCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHHH
T ss_conf 9534437899999965823220563409999999999999
No 53
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.86 E-value=5.8e-21 Score=141.19 Aligned_cols=119 Identities=22% Similarity=0.374 Sum_probs=111.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
..-|-|||||...|+.+..+|+..||.+.+.+|+++.+.......|.|+++|+.||+++|.|+-+++++.. ..+|||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVIF 81 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf 87689976848899999999983895366504799998306678897699855788885089999999539--9988799
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99249989999999769988998798989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+||++.-....++++.|+.|||.||++-+.|++++++++..
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 82788728999999742156774788548999999999998
No 54
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.86 E-value=2.2e-20 Score=137.84 Aligned_cols=118 Identities=17% Similarity=0.297 Sum_probs=109.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+-|||||||++..|+.++.+|+.. ++++. .++++.++++.++.++||++++|+.||+++|+++++.|++.. ..+||
T Consensus 3 p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~--p~~~i 80 (210)
T PRK09935 3 PASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQ--ETVKV 80 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCCE
T ss_conf 7889998596999999999996298928999989999999999747999999889999988640567898738--99708
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+++|++.......++++.|+++|+.|+.+.++|.++++.++.
T Consensus 81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~ 122 (210)
T PRK09935 81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS 122 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 997176729999999966877688678999999999999985
No 55
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.86 E-value=3.1e-20 Score=136.98 Aligned_cols=115 Identities=21% Similarity=0.299 Sum_probs=106.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997-898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|-||+||||++..|+-++.+|+. .++++. +++|+.++++.+.+++||++++|+.||+++|++++++++. .+|+
T Consensus 1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~-----~~~v 75 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK-----GMAT 75 (196)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC-----CCCE
T ss_conf 91999987979999999999812999599999899999999887449999998788788620779999843-----8748
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++|++.......++.+.|+++|+.|+..+++|.++|+.+..
T Consensus 76 ivls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~ 117 (196)
T PRK10360 76 IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999730759999999975998899778999999999999986
No 56
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=6.1e-20 Score=135.32 Aligned_cols=116 Identities=33% Similarity=0.500 Sum_probs=107.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 78995399899999999999789-8999-988979999999827998999950412969599999998285768995999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSG-YIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g-~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
||++|||.+..|..++.+|+..+ +++. ++.+|.++++.+...+||++++|+.||+++|+++++.||+ ...+++|++
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~--~~p~~~vvv 79 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRA--RGPDIKVVV 79 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH--HCCCCEEEE
T ss_conf 499980977799999999986899669998278899999851379988998378899875999999998--689972999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9924998999999976998899879898999999999740
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+|++..+....++++.|+++|+.|+.+++.+.++|+.+..
T Consensus 80 lt~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 9677898999999977996998679999999999999975
No 57
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.84 E-value=2e-19 Score=132.32 Aligned_cols=119 Identities=33% Similarity=0.657 Sum_probs=107.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 987789953998999999999997898999988979-999999827-998999950412969599999998285768995
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGM-EALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~-eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
+..+||+|||++..+..++..|..+|+.+..+.+|. +|++.++.+ .||+|++|+.||++||+++++++|+. .+.+|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~~p 81 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR--GPNIP 81 (130)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCC
T ss_conf 8888999789999999999999877978999578399999998627899999980688788889999999971--89996
Q ss_pred EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHH
Q ss_conf 999992499899999997699889987989899-9999999740
Q gi|254780476|r 79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSI-FMETIKKYIG 121 (123)
Q Consensus 79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~-L~~~i~~~l~ 121 (123)
++++|++........+.+.|+++|+.||+.... |...+.+++.
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89998678676599999768768975899879999999999986
No 58
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.84 E-value=2e-19 Score=132.38 Aligned_cols=116 Identities=14% Similarity=0.238 Sum_probs=105.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 7789953998999999999997898999988979999999827--99899995041296959999999828576899599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~--~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
.+||+|||++..++....+|+..||+|.++.||.+|++.++++ .+|++++| .||.++|.++.+.++... ..+|||
T Consensus 700 e~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~--p~lpVi 776 (831)
T PRK13837 700 ETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAA--PTLPII 776 (831)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHC--CCCEEE
T ss_conf 77999859889999999999967996888689999999998389985399988-999998799999998618--997499
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 999249989999999769988998798989999999997403
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
+ |++............|...||.|||+.++|..+|+++|+.
T Consensus 777 l-sg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~ 817 (831)
T PRK13837 777 L-AGSSLKMAAREALATAIAEILPKPISSRTLAYALRTALAT 817 (831)
T ss_pred E-ECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 9-7688144331102226670650999999999999999848
No 59
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.83 E-value=3.7e-19 Score=130.83 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=107.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHCCCCCCC
Q ss_conf 77899539989999999999978-98999-9889799999998279989999504129---6959999999828576899
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQE---ISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~---~dG~el~~~ir~~~~~~~i 77 (123)
=||+||||++..|+-++.+|+.. ++++. ++.+|.++++.+...+||++++|+.||+ +||+++++.+|+. ...+
T Consensus 4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~--~p~~ 81 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSL 81 (216)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 88999889799999999998159996899987999999999862398989982677999887899999999985--8998
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 59999924998999999976998899879898999999999740
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+|+++|++..+....+++++|+++|+.|--.+++|.++|+.+..
T Consensus 82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~ 125 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 08998477878999999858974899878999999999999987
No 60
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.83 E-value=3.6e-19 Score=130.85 Aligned_cols=115 Identities=30% Similarity=0.437 Sum_probs=99.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC-E-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997898-9-999889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGY-I-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~-~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|-||+|+||++..|+.++.+++..+. + +.++++|.+|++.+..++||++++|++||++||+|+++.++.. ...+|
T Consensus 1 M~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~~---~~~~i 77 (239)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGMLDPE---HMPYI 77 (239)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC---CCCEE
T ss_conf 949999969999999999999758798999998999999999985399999983998695999999983733---49869
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++|++ .+...++.+.++.+||.||++.++|..++.++..
T Consensus 78 IFvT~~--~e~a~~af~~~a~dYllKP~~~e~l~~~l~r~~~ 117 (239)
T PRK11697 78 VFVTAF--DEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (239)
T ss_pred EEEECC--HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999586--8999999730972665389999999999999999
No 61
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.80 E-value=4.5e-19 Score=130.35 Aligned_cols=114 Identities=24% Similarity=0.457 Sum_probs=103.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
-||+||||+......+..+|+..|..+.++++..+|+..+..+.||+|++|+.||+|+|+|+++++|+.. +.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPIIFI 78 (361)
T ss_pred CCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHH--CCCCEEEE
T ss_conf 9279984638999999999986110210068878899999843887799985237860878999998753--14868999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 92499899999997699889987989899999999974
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
|++....+ ...+....+|+.||++++.|-.+|.+..
T Consensus 79 ssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 79 SSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred ECCHHHHH--HHCCCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 63056523--2035566754168888889999999874
No 62
>PRK09191 two-component response regulator; Provisional
Probab=99.80 E-value=8.9e-19 Score=128.63 Aligned_cols=115 Identities=27% Similarity=0.408 Sum_probs=98.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf 987789953998999999999997898999-9889799999998279989999504129-69599999998285768995
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ip 78 (123)
+..|||||||++....-++.+++..||+|. .|.++.+|++++++++||++++|++|++ +||++.++.|++. .++|
T Consensus 136 ~~~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~---~~iP 212 (261)
T PRK09191 136 VATSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKT---FDVP 212 (261)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH---CCCC
T ss_conf 4788799858599999999999987996787627899999997425989899953479998799999999982---8999
Q ss_pred EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 999992499899999997699889987989899999999974
Q gi|254780476|r 79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
+|++|++...-..-+. .....+++|||+++.+...|.+++
T Consensus 213 vIFiTAyperlltg~~--~ep~~li~KPf~~~~v~aai~qAl 252 (261)
T PRK09191 213 VIFITAFPERLLTGER--PEPAFLITKPFQPDTVKAAISQAL 252 (261)
T ss_pred EEEECCCHHHHCCCCC--CCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 8997778465302788--887403569898899999999999
No 63
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.74 E-value=6.6e-17 Score=117.88 Aligned_cols=104 Identities=29% Similarity=0.515 Sum_probs=92.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 8778995399899999999999789--89999889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+-|||+|||+...|+.++++|...| ..+-++.||.+|++.+.+..||+|.+|++||.|||+++++.|-+. ..+||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~---~p~pV 77 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL---RPLPV 77 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC---CCCCE
T ss_conf 947999858199999999998308973799733787999999972299789972566445479999998447---99868
Q ss_pred EEEEECCCHH--HHHHHHHCCCCEEEECCCC
Q ss_conf 9999249989--9999997699889987989
Q gi|254780476|r 80 IAVTAFAMKG--DEERIRKGGCEAYISKPIS 108 (123)
Q Consensus 80 i~~t~~~~~~--~~~~~~~~g~~~~l~KPi~ 108 (123)
||+|+-..++ ...++++.|+.+|+.||-.
T Consensus 78 imvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 78 IMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 9995145213799999984574213217876
No 64
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.73 E-value=3.8e-17 Score=119.27 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=102.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC-CCC----HHHHHHHHHHCCCCCCCCE
Q ss_conf 89953998999999999997898999988979999999827998999950412-969----5999999982857689959
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EIS----GLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp-~~d----G~el~~~ir~~~~~~~ipi 79 (123)
+||||||+-.++.++=-|. .+|++..|.+-++|+..++.|.|.+|.||+.|| +.| |+..+++|=+.. .+++|
T Consensus 1 LLiVeDD~glQKQLkWs~G-~~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~--P~TKV 77 (451)
T TIGR02915 1 LLIVEDDLGLQKQLKWSFG-ADYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDTKV 77 (451)
T ss_pred CCEEECCHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEE
T ss_conf 9245368665678764157-88403553475789998605699647736755789887458999999999638--98048
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++||.+......++.++|+=||..|||+++.|--+|+|++.
T Consensus 78 IViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~ 119 (451)
T TIGR02915 78 IVITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFR 119 (451)
T ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998668983889999643751013578757899999999888
No 65
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.69 E-value=6e-16 Score=112.35 Aligned_cols=115 Identities=21% Similarity=0.403 Sum_probs=108.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
|..|+||||....+.+.+-++.-||.|.+|.+.+||+..++..+|...++|+.|.+.+|+++.+.||+.. .+..||++
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~--~d~rivvL 87 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERR--ADMRIVVL 87 (182)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCC--CCCEEEEE
T ss_conf 6058961876999999999860686257614499999998517985288986406887468999998249--76438988
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9249989999999769988998798989999999997
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~ 119 (123)
||+++-....++.+.|+.+||.||-+.+..+.++.+-
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 4511799999999862455407977768999998602
No 66
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.67 E-value=2e-15 Score=109.38 Aligned_cols=116 Identities=8% Similarity=0.020 Sum_probs=101.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
..|+|+++|....+..+...++..=-.+..+.++.++++.+ .+||+|++|+.||+++|++.++++.+. ...+++|++
T Consensus 10 g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~-~~p~~kVli 86 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSR-KNNNIKILL 86 (216)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 83899955842999999998898764763024776677644--799989984887883089999999972-599977999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 992499899999997699889987989899999999974
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
+|.++.......+...|+++|+.|-.++++|.+.|+.+.
T Consensus 87 LTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~ 125 (216)
T PRK10100 87 LNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVL 125 (216)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 968874899999976587667668999999999999998
No 67
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.62 E-value=1.2e-15 Score=110.62 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=99.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
-||.|+|+|-.-.+-..+=....|.|..+.+...|++.+....+|||+.|+.||++||++|++++|+ ....+|+|++|
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~t 96 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVVP 96 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEEE
T ss_conf 9999468887775234566677421276323888986531589876996565788867999999861--38999889995
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 24998999999976998899879898999999999740
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
+...+....+++.+|+.+|+.| ..+..+..+...+.
T Consensus 97 ~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~ 132 (674)
T PRK13558 97 TAVDEDVARRAVDADATGLVPA--VSEDATAAIADRIE 132 (674)
T ss_pred CCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 6785899999875163643344--71768999999999
No 68
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-14 Score=105.22 Aligned_cols=116 Identities=28% Similarity=0.456 Sum_probs=100.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 987789953998999999999997898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|.-|+|++||++.++..+...|...||.+. ++.+|.++......++||+|++|+.+|..| ...+ +.........||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd--~~e~-~~~~~~~~~~pi 80 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRD--IIEA-LLLASENVARPI 80 (194)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCC--HHHH-HHHHHCCCCCCE
T ss_conf 6653034241135556789899875973876541344750677852998799966787732--8999-898605899878
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9999249989999999769988998798989999999997
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~ 119 (123)
|++|+++.++..+++.++|+.+|+.||+++..|+..+.-+
T Consensus 81 v~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 81 VALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred EEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 9997167858999999738749883476542104799999
No 69
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.47 E-value=1.1e-12 Score=93.68 Aligned_cols=106 Identities=8% Similarity=0.027 Sum_probs=89.8
Q ss_pred HHHHHHHHHHCCC-----EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 9999999997898-----999-9889799999998279989999504129695999999982857689959999924998
Q gi|254780476|r 15 MKLFRDLIETSGY-----IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 15 ~~~l~~~l~~~g~-----~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
..-++.+|+.... ++. ++++|.||+..+....||++++|+.||++||++++++|++ .+.+++||++|.++.+
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r--~~P~vriLVLTm~d~e 80 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAI--KFPRMRRLVIADDDIE 80 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH--HCCCCEEEEEECCCCH
T ss_conf 78899998418998348999505456999986288666438985389999766999999999--7899718999747687
Q ss_pred HHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9999999-769988998798989999999997403
Q gi|254780476|r 89 GDEERIR-KGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 89 ~~~~~~~-~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
....+++ ..|+.+|+.|....++|.+.+..+++.
T Consensus 81 ~~v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g 115 (205)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (205)
T ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99999999841668885678899999999998706
No 70
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=4.5e-12 Score=90.11 Aligned_cols=115 Identities=26% Similarity=0.423 Sum_probs=95.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|-+|+++||++..++-+..++..+ ..++. ++.++.++++.++...||++++|+.||+++|+++++.|+.. ....+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~--~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKG--DPRPAI 78 (244)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC--CCCCEE
T ss_conf 985177147676799999998874421111331230317888760257769997237652449999986156--988539
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99992499899999997699889987989899999999974
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
+++|+++.... .+.+..+-+|+.||++.+.+-..+.+..
T Consensus 79 vfvt~~~~~a~--~afev~a~d~i~kp~~~~~l~~~l~~~~ 117 (244)
T COG3279 79 VFVTAHDEYAV--AAFEVEALDYLLKPISEERLAKTLERLR 117 (244)
T ss_pred EEEEEHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99986154323--3313346677428542689999999988
No 71
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.31 E-value=1.1e-10 Score=82.03 Aligned_cols=116 Identities=14% Similarity=0.280 Sum_probs=103.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.+|++|||+....+.+...+... +.+....++.+++....+..||++++|..|+..+|++++..+|+....+.+|++.+
T Consensus 156 ~~il~v~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~ 234 (457)
T PRK09581 156 GRILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLL 234 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHHH-CCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 61999879679999999997533-24688548699998743579768997565676646899999971434357329999
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9249989999999769988998798989999999997
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~ 119 (123)
+.........++.+.|+++|+.+|++..++...+...
T Consensus 235 ~~~~~~~~~~~~~~~g~~d~~~~~~~~~e~~~r~~~~ 271 (457)
T PRK09581 235 VDEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQ 271 (457)
T ss_pred ECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 5688616676664146522884378627555879999
No 72
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.28 E-value=1.1e-10 Score=82.08 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=95.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
.++||++|+|+..++.+..+|..||+.+..+.+..+. ...+||++++|+.||.++|.+.............-++++
T Consensus 536 g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il 611 (920)
T PRK11107 536 GKRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQL----PEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLIL 611 (920)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHH----HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 8769997697789999999999749645751788775----136888799616666654066789998630035784699
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 992499899999997699889987989899999999
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
++............+.|++.++.||++...|+..+.
T Consensus 612 ~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~ 647 (920)
T PRK11107 612 ALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALL 647 (920)
T ss_pred EECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHH
T ss_conf 715643455788764253021127776889999872
No 73
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.22 E-value=1.7e-11 Score=86.80 Aligned_cols=92 Identities=24% Similarity=0.432 Sum_probs=83.3
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 89899998897999999982799899995041296959999999828576899599999249989999999769988998
Q gi|254780476|r 25 SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 25 ~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
.-++|.+|.+|.+|+..+..++||.+++|++||+++||++++.+++++.. ++++|......+..+..++|++.|++
T Consensus 11 ~~~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~~----~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 11 EYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCCCC----EEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 55546342542779999744898748741006886730199876358751----69986037877755677631344136
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7989899999999974
Q gi|254780476|r 105 KPISLSIFMETIKKYI 120 (123)
Q Consensus 105 KPi~~~~L~~~i~~~l 120 (123)
||++...+....+...
T Consensus 87 ~~~~~~~~~~r~~~l~ 102 (435)
T COG3706 87 KPVNDSQLFLRAKSLV 102 (435)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 7777177887526631
No 74
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=99.14 E-value=2.3e-10 Score=80.33 Aligned_cols=55 Identities=36% Similarity=0.710 Sum_probs=53.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 7789953998999999999997898999988979999999827998999950412
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp 57 (123)
.|||+|||++..++.++.+|+..||++.++++|.+|++.+.++.||++++|+.||
T Consensus 1 ~kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~D~~mP 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55 (55)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9899993799999999999997899999988999999999749999999967687
No 75
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.60 E-value=1.3e-06 Score=58.74 Aligned_cols=107 Identities=8% Similarity=0.151 Sum_probs=82.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
||||||||+..|.-+..+|+=.|.++..+++++-..........-++++...++ +..++++.+.+ ....+|+++++
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~--~~p~~Pvlllg 76 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAK--WDPHLPVLLLG 76 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHH--HCCCCCEEEEC
T ss_conf 989986888999979999986499649954889889886378852999967852--09999999996--48899999987
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 249989999999769988998798989999999997
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~ 119 (123)
....... ...+-+-+.+|++-..|.+.+.+.
T Consensus 77 ~~~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 77 EHDSAAE-----LANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCCCHHH-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 8875212-----055258707889879999999875
No 76
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.24 E-value=0.0074 Score=37.17 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCC-H-HHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 89999999999978989999---88979999999827998999950412969-5-9999999828576899599999249
Q gi|254780476|r 12 ELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQEIS-G-LEITKQIKEDSELQEIPVIAVTAFA 86 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~~d-G-~el~~~ir~~~~~~~ipii~~t~~~ 86 (123)
..=..++..+|+..||+|.- -.+.++.++.+.++.||+|.+...|+..- . -++.+.+|+.. ..++|| ++-+..
T Consensus 13 ~iG~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~g-~~~i~v-~vGG~~ 90 (119)
T cd02067 13 DIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG-LDDIPV-LVGGAI 90 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCEE-EEECCC
T ss_conf 789999999999789989989999999999999997099999996220242689999999999769-999859-998998
Q ss_pred CHHHHHHHHHCCCCEEEECCC
Q ss_conf 989999999769988998798
Q gi|254780476|r 87 MKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 87 ~~~~~~~~~~~g~~~~l~KPi 107 (123)
...+...+.+.|++.|..-.-
T Consensus 91 ~~~~~~~~~~~Gad~~~~~a~ 111 (119)
T cd02067 91 VTRDFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred CCHHHHHHHHCCCCEEECCHH
T ss_conf 974399999869979977807
No 77
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=97.03 E-value=0.0031 Score=39.31 Aligned_cols=100 Identities=19% Similarity=0.394 Sum_probs=75.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 877899539989999999999978989999889799999998279989999504129-6959999999828576899599
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii 80 (123)
.|+||+||-+......+.++|...|-.|.+...+ -|-.++.+.+||||+|.=. |+ =.-|++...|++.- .+++||.
T Consensus 524 G~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~-~ae~~fd~~rPDLVVLSPG-PGrP~dFdv~~Ti~aa~-ar~lP~F 600 (726)
T TIGR01815 524 GKRILLVDHEDSFVHTLANYLRQTGASVTTLRHS-FAEELFDEERPDLVVLSPG-PGRPKDFDVKETIKAAL-ARDLPVF 600 (726)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCH-HHHHHHHCCCCCEEEECCC-CCCCCCCCHHHHHHHHH-HCCCCEE
T ss_conf 8779998547543777788876348755304304-7899973279988986873-12387544788999999-7289857
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 999249989999999769988998798
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
.+= -...+..+.. -|.=+.|..|+
T Consensus 601 GVC-LGLQg~vEaf--GG~L~vL~~P~ 624 (726)
T TIGR01815 601 GVC-LGLQGLVEAF--GGELDVLAIPV 624 (726)
T ss_pred EEH-HHHHHHHHHH--CCCCCCCCCCC
T ss_conf 741-3468999874--67213578887
No 78
>PRK13566 anthranilate synthase; Provisional
Probab=96.97 E-value=0.003 Score=39.38 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=60.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE--ECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 87789953998999999999997898999988979999999827998999950--4129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI--QLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~--~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
.+|||+||........+.++|...|.+|.+..++ .+.+.+....||+|++.= .-|..-|.. ..|.... .+++||
T Consensus 523 g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d-~~~~~l~~~~pD~vvlSPGPG~P~d~g~~--~~i~~~~-~~~iPi 598 (724)
T PRK13566 523 GKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP-VAEEILDRVNPDLVVLSPGPGRPEDFDCK--ATIDAAL-ARNLPI 598 (724)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC-CCHHHHHHHCCCEEEECCCCCCCHHCCCH--HHHHHHH-HCCCCE
T ss_conf 7579998465327999999999819879998189-87677763188989987999790005585--9999998-579987
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780476|r 80 IAVT 83 (123)
Q Consensus 80 i~~t 83 (123)
+.+-
T Consensus 599 lGVC 602 (724)
T PRK13566 599 FGVC 602 (724)
T ss_pred EEEC
T ss_conf 9977
No 79
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=96.61 E-value=0.028 Score=33.84 Aligned_cols=66 Identities=11% Similarity=0.247 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 9999999997898999988979999999827-9989999504129695999999982857689959999924
Q gi|254780476|r 15 MKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
.+-+..-|+..|++|..+.+..+++..++.+ ...++++|+ +....++++.||... .++||.+++..
T Consensus 6 ~~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~---~~~~~~ll~~ir~~n--~~lPvFl~~~~ 72 (111)
T pfam03709 6 SRELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSW---DDEARGLLDEIRRRN--FDLPVFLLAET 72 (111)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE---CHHHHHHHHHHHHHC--CCCCEEEEECH
T ss_conf 89999999978988997487899999998387876899984---606899999999747--89998988441
No 80
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.35 E-value=0.087 Score=31.01 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 3998999999999997898999---988979999999827998999950412969--59999999828576899599999
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~~~~ipii~~t 83 (123)
|-...-..++...|+..||+|. ...+.++..+.+.++.+|+|.+....-... .-++.+.+|+. ..+++|+++=-
T Consensus 10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~-G~~di~vvvGG 88 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA-GLKDILLYVGG 88 (128)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCCCCEEEECC
T ss_conf 65378899999999978972984798899999999998739999998232025624899999999967-99999899789
Q ss_pred -----ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf -----24998999999976998899879898999999999
Q gi|254780476|r 84 -----AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 84 -----~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
..+.++.+....++|++..+...-++++..+.+++
T Consensus 89 ~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~k 128 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLKK 128 (128)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHC
T ss_conf 8677831048999999966968574998799999999859
No 81
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.25 E-value=0.017 Score=35.06 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH--HHHHCCCCCCCCE
Q ss_conf 87789953998999999999997898999988979999999827998999950412969599999--9982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK--QIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~--~ir~~~~~~~ipi 79 (123)
.|+.+.||-|....++..++|...+.+|.--.+ +..+-.+.||.+++.+--+..+-..+-+ -.|...-. +--|
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mt-d~vi 85 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAHYDMMLLGVAVTFRENLTMQHERLAKALSMT-DFVI 85 (140)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCCCHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCEE
T ss_conf 664577668608999999998468826884233----10027445203465366655688038899999998653-1367
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99992499899999997699889987989899999999
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
+.+- +......++..+-|+.+.+.||++..+|+-.+-
T Consensus 86 lalP-s~~qv~AeqLkQ~g~~~CllKPls~~rLlptll 122 (140)
T COG4999 86 LALP-SHAQVNAEQLKQDGAGACLLKPLSSTRLLPTLL 122 (140)
T ss_pred EECC-CHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
T ss_conf 7367-288875999963142867407650656678998
No 82
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.20 E-value=0.11 Score=30.53 Aligned_cols=117 Identities=13% Similarity=0.204 Sum_probs=84.1
Q ss_pred CEEEEE----CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH----HHHHHC
Q ss_conf 778995----39989999999999978989999---8897999999982799899995041296959999----999828
Q gi|254780476|r 3 KKVMIV----EDNELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQEISGLEIT----KQIKED 71 (123)
Q Consensus 3 kkiLiV----DD~~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~----~~ir~~ 71 (123)
.||++. |-...-.+++...|+..||+|.- ..+.++..+.+.++..|+|.+...- + .+..++ +.+++.
T Consensus 4 ~~vvi~~~g~D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~-G-~~~~~~~~l~~~l~~~ 81 (137)
T PRK02261 4 PTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLY-G-HGEIDCRGLREKCIEA 81 (137)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCC-C-CCCHHHHHHHHHHHHC
T ss_conf 8799982188611788999999999789749846887999999999987399999971111-2-6612799999999967
Q ss_pred CCCCCCCEEEE-----EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 57689959999-----9249989999999769988998798989999999997403
Q gi|254780476|r 72 SELQEIPVIAV-----TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 72 ~~~~~ipii~~-----t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
...++|+++= +....+.+..+..++|++..+...-++++..+.+++.+..
T Consensus 82 -g~~di~vvvGG~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~~ 136 (137)
T PRK02261 82 -GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLNA 136 (137)
T ss_pred -CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC
T ss_conf -9999969983621678878399999999779798879788999999999998633
No 83
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=95.82 E-value=0.16 Score=29.50 Aligned_cols=100 Identities=20% Similarity=0.380 Sum_probs=68.6
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECCCC-CH-HHHHHHHHHCCCC
Q ss_conf 78995----39989999999999978989999--8-897999999982799899995041296-95-9999999828576
Q gi|254780476|r 4 KVMIV----EDNELNMKLFRDLIETSGYIALQ--T-RNGMEALELARQHKPDVIIMDIQLQEI-SG-LEITKQIKEDSEL 74 (123)
Q Consensus 4 kiLiV----DD~~~~~~~l~~~l~~~g~~v~~--a-~~g~eal~~l~~~~~dlillD~~mp~~-dG-~el~~~ir~~~~~ 74 (123)
||++. |-...=..++..+|+..||+|.- + ...++.++.++++.||+|-+...|+.- .. -++.+.+|+....
T Consensus 84 ~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 59996279877389999999999878977997789999799999999729899999625668899999999999972898
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf 89959999924998999999976998899879
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP 106 (123)
.++||++ -|.... ..-+...|++.|-.-+
T Consensus 164 ~~v~i~v-GG~a~~--~~~a~~~GAD~~a~da 192 (201)
T cd02070 164 DKVKVMV-GGAPVN--QEFADEIGADGYAEDA 192 (201)
T ss_pred CCCEEEE-ECCCCC--HHHHHHHCCCEECCCH
T ss_conf 8985999-880179--9999992988784799
No 84
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.82 E-value=0.16 Score=29.48 Aligned_cols=112 Identities=13% Similarity=0.227 Sum_probs=79.6
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCC-C-CHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 53998999999999997898999---9889799999998279989999504129-6-95999999982857689959999
Q gi|254780476|r 8 VEDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQE-I-SGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 8 VDD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~-~-dG~el~~~ir~~~~~~~ipii~~ 82 (123)
-|-...-.+++.+.|.+.||+|. ...+++|+.+.+.++..|+|.+...=-+ . ..-++.+.+|+. ...++. ++.
T Consensus 22 lDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~-G~~~i~-v~~ 99 (143)
T COG2185 22 LDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREA-GVEDIL-VVV 99 (143)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHH-CCCCEE-EEE
T ss_conf 654431319999999857937981587589999999998647988999734404789999999999981-975548-865
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 924998999999976998899879898999999999740
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
-+.--.++..+..+.|++.++.--....+.++.+...++
T Consensus 100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 686681367999981866546899989999999999987
No 85
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=95.38 E-value=0.095 Score=30.78 Aligned_cols=77 Identities=13% Similarity=0.297 Sum_probs=58.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEEEEE--CCCCCHH--HHHHHHHHCCCC
Q ss_conf 8778995399899999999999789899998897---99999998279989999504--1296959--999999828576
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQHKPDVIIMDIQ--LQEISGL--EITKQIKEDSEL 74 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g---~eal~~l~~~~~dlillD~~--mp~~dG~--el~~~ir~~~~~ 74 (123)
|+|||+||+-...---+.++|...|..+....+- ...++.+....|+.|++.=. -|...|. ++.++++
T Consensus 1 M~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~~~~ii~~~~----- 75 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLR----- 75 (531)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCCHHHHHHHHC-----
T ss_conf 970999828886288999999866995699969983130199997249596998999989023657399999865-----
Q ss_pred CCCCEEEEE
Q ss_conf 899599999
Q gi|254780476|r 75 QEIPVIAVT 83 (123)
Q Consensus 75 ~~ipii~~t 83 (123)
.++||+-+-
T Consensus 76 ~~iPILGIC 84 (531)
T PRK09522 76 GKLPIIGIC 84 (531)
T ss_pred CCCCEEEEC
T ss_conf 999989987
No 86
>PRK05637 anthranilate synthase component II; Provisional
Probab=95.28 E-value=0.039 Score=33.01 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=55.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978989999889799999998279989999504--129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
|+|||+||.-...-.-+.+++...|+.+....+. ..++.+....||.|++.=. -|...|. ....++... .++||
T Consensus 1 M~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~-~~~~~~~~~~pd~ivlSPGPg~P~d~g~-~~~~~~~~~--~~iPI 76 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVETILAANPDLICLSPGPGYPADAGN-MMALIERTL--GQIPL 76 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHHH--CCCCE
T ss_conf 9779999488975999999998679907999699-9999998519995999999999577757-499999973--56982
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780476|r 80 IAVT 83 (123)
Q Consensus 80 i~~t 83 (123)
+.+=
T Consensus 77 LGIC 80 (208)
T PRK05637 77 LGIC 80 (208)
T ss_pred EEHH
T ss_conf 2114
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.25 E-value=0.26 Score=28.30 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCC-CC-HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 39989999999999978989999---889799999998279989999504129-69-59999999828576899599999
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQE-IS-GLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~-~d-G~el~~~ir~~~~~~~ipii~~t 83 (123)
|-...-.+++...|+..||+|.- -.+.++..+.+.++.+|+|-+...+-. +. --++.+.+++.. ..++||+ .-
T Consensus 10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G-~~di~v~-vG 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELG-AGDILVV-GG 87 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCCEEE-EE
T ss_conf 622877999999999789769967998899999999997399899996465544789999999999769-9984699-94
Q ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 2499899999997699889987989899999999
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
+.--+.+.....++|++..+..--++++..+.++
T Consensus 88 G~Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i~ 121 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 5649899999997799889895889999999975
No 88
>PRK07206 hypothetical protein; Provisional
Probab=94.54 E-value=0.4 Score=27.18 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-------------------------HHHHHHHHHCCCCEEEEEE-
Q ss_conf 98778995399899999999999789899998897-------------------------9999999827998999950-
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNG-------------------------MEALELARQHKPDVIIMDI- 54 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g-------------------------~eal~~l~~~~~dlillD~- 54 (123)
|+|+|+|||--.+-+ .+..-+...||.+..+.|. .+.++.++...|+.|+--.
T Consensus 1 ~~~~vviVDp~StG~-~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~aVi~g~E 79 (415)
T PRK07206 1 MMKKVVIVDPFSSGK-FLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQLGPDAVIAGAE 79 (415)
T ss_pred CCCEEEEECCCCCHH-HHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCH
T ss_conf 985599986765187-9999999739828999837988435442324343433210578999999998629729997855
Q ss_pred -------------ECCCCCHHHHHHHHH------HCCCCCCCCEEEEEECCCHHHHHHHHH-CCCC--EEEECCCC----
Q ss_conf -------------412969599999998------285768995999992499899999997-6998--89987989----
Q gi|254780476|r 55 -------------QLQEISGLEITKQIK------EDSELQEIPVIAVTAFAMKGDEERIRK-GGCE--AYISKPIS---- 108 (123)
Q Consensus 55 -------------~mp~~dG~el~~~ir------~~~~~~~ipii~~t~~~~~~~~~~~~~-~g~~--~~l~KPi~---- 108 (123)
.+|.-|+..+...=| +.-....+|..-.-.....++...+.+ .+.. -++.||++
T Consensus 80 ~gV~lAd~La~~LgLp~~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVvKP~~gagS 159 (415)
T PRK07206 80 SGVELADRLAERLGLCYANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVIKPLESAGS 159 (415)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 65999999999868998995568877459999999999759985538852999999999986055799989958999987
Q ss_pred --------HHHHHHHHHHHHHC
Q ss_conf --------89999999997403
Q gi|254780476|r 109 --------LSIFMETIKKYIGE 122 (123)
Q Consensus 109 --------~~~L~~~i~~~l~~ 122 (123)
.+++.+...+.++.
T Consensus 160 ~gV~~c~~~~el~~a~~~i~~~ 181 (415)
T PRK07206 160 DGVFFCPDKQDAYHAFNAILGK 181 (415)
T ss_pred CCEEEECCHHHHHHHHHHHHCC
T ss_conf 9989979999999999998566
No 89
>pfam00563 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Probab=94.41 E-value=0.33 Score=27.71 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC----CCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 98999999999997898999--988979999999827998999950412----969599999998285768995999992
Q gi|254780476|r 11 NELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ----EISGLEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp----~~dG~el~~~ir~~~~~~~ipii~~t~ 84 (123)
+....+.++ .++..|+.+- ...+|...+..+..-+||.|=+|..+- +.+...+++.+.+......+++| .++
T Consensus 130 ~~~~~~~i~-~lk~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~l~~~a~~~~~~vi-aeG 207 (233)
T pfam00563 130 DLRLLEALA-RLRSLGFRLALDDFGTGYSSLSYLSRLPPDYIKIDRSFIKDLSDPESRALLRALIALARELGIKVV-AEG 207 (233)
T ss_pred CHHHHHHHH-HHHHCCCCEEECCCCCCCCCHHHHHHCCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE-EEE
T ss_conf 199999999-999779958961789997677899748887899989998407772189999999999998799899-970
Q ss_pred CCCHHHHHHHHHCCCCE----EEECC
Q ss_conf 49989999999769988----99879
Q gi|254780476|r 85 FAMKGDEERIRKGGCEA----YISKP 106 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~----~l~KP 106 (123)
-........+.+.|++. |+.||
T Consensus 208 VE~~~~~~~l~~~Gv~~~QG~~~~~P 233 (233)
T pfam00563 208 VETEEQLELLKELGIDYVQGYLFSKP 233 (233)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 86399999999759998316810279
No 90
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.38 E-value=0.094 Score=30.82 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=57.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 877899539989999999999978989999889799999998279989999504--129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+++||+||+-...--.+.+++...|.++.+..+..-....+....||.|++.=. -|...|. ....||+- ..++||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~-~~~~i~~~--~~~~Pi 77 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI-SLELIRRF--AGRIPI 77 (191)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCH-HHHHHHHH--CCCCCE
T ss_conf 956999977442499999999973993499988965877886049998998489979377361-89999986--089988
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780476|r 80 IAVT 83 (123)
Q Consensus 80 i~~t 83 (123)
+.+-
T Consensus 78 LGVC 81 (191)
T COG0512 78 LGVC 81 (191)
T ss_pred EEEC
T ss_conf 9987
No 91
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.11 E-value=0.5 Score=26.64 Aligned_cols=118 Identities=12% Similarity=0.125 Sum_probs=84.1
Q ss_pred CEEEEE----CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCC
Q ss_conf 778995----3998999999999997898999---988979999999827998999950412969--5999999982857
Q gi|254780476|r 3 KKVMIV----EDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSE 73 (123)
Q Consensus 3 kkiLiV----DD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~ 73 (123)
.||||+ |-...-++++..-+...||+|. ...+.+|+.+...++..|+|.+...=.+-- =-++++.+|+..
T Consensus 583 prilvaKmGqDGHdrGak~iA~~f~D~GfdV~~~~lfqTPeE~a~~A~e~dvhvigisslaa~h~tLVP~l~~~Lk~~g- 661 (715)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLG- 661 (715)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-
T ss_conf 7699962798721002789998887576068616755899999999997599999982334544212799999999649-
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC----CCHHHHHHHHHHHHHC
Q ss_conf 689959999924998999999976998899879----8989999999997403
Q gi|254780476|r 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP----ISLSIFMETIKKYIGE 122 (123)
Q Consensus 74 ~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP----i~~~~L~~~i~~~l~~ 122 (123)
..++|||+ -+---++|.....++|+..++.-- -...++++.+.+-++.
T Consensus 662 ~~di~Vvv-GGvIP~~D~~~L~~~GV~~if~Pgt~i~~~a~~~l~~l~~~~~~ 713 (715)
T PRK09426 662 REDIMVVV-GGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLEARLGY 713 (715)
T ss_pred CCCCEEEE-CCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98867998-38688799999997697778589982799999999999986377
No 92
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=92.92 E-value=0.7 Score=25.80 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=49.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 9877899539989999999999978989999889799999998279989999504--12969599999998285768995
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ip 78 (123)
|.+||||||.-...-..+.+.+...|..+.....-.-....+ ..|+-|++.-. -|...+ ++...++... ..+|
T Consensus 1 M~~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~--~~~~~IIlSpGPg~p~~~~-~~~~~i~~~~--~~~P 75 (191)
T PRK06895 1 MATNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEV--ENFSHILISPGPDVPRAYP-QLFAMLERYY--QQKS 75 (191)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHH--HCCCEEEEECCCCCCCCCC-HHHHHHHHHC--CCCC
T ss_conf 998699996988489999999987799699984784899898--5589699908999801052-2499999860--6898
Q ss_pred EEEEE
Q ss_conf 99999
Q gi|254780476|r 79 VIAVT 83 (123)
Q Consensus 79 ii~~t 83 (123)
|+.+-
T Consensus 76 ILGIC 80 (191)
T PRK06895 76 ILGVC 80 (191)
T ss_pred EEEEC
T ss_conf 78982
No 93
>PRK10551 hypothetical protein; Provisional
Probab=92.33 E-value=0.97 Score=25.00 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=78.2
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCC---CC--HHHHHHHHHHCCCCCCCCEE
Q ss_conf 53998999999999997898999--9889799999998279989999504129---69--59999999828576899599
Q gi|254780476|r 8 VEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQE---IS--GLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 8 VDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp~---~d--G~el~~~ir~~~~~~~ipii 80 (123)
+++ ....+.+ ..|...|+.+. -..+|...+..+++-++|.|=+|-.+-. .| ...+++.|-+..+.-++.+|
T Consensus 394 ~~~-~~~~~~l-~~Lr~~Gv~ialDDFGtGySSL~~L~~lp~D~lKIDrsfv~~i~~~~~~~~il~~Ii~la~~l~l~vV 471 (518)
T PRK10551 394 LQE-EEALKLF-AWLHSQGIEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETVTSPVLDAVLTLAKRLNMLTV 471 (518)
T ss_pred CCH-HHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 490-9999999-99997699499978999703589997399988998899985204690468999999999998799699
Q ss_pred EEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
Q ss_conf 999249989999999769988----99879898999999999
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETIKK 118 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~ 118 (123)
+ -|-..+.......+.|++. |+.||+..++|.+-+++
T Consensus 472 A-EGVEt~eq~~~L~~lG~~~~QGy~~srPmp~~~f~~wl~~ 512 (518)
T PRK10551 472 A-EGVETPEQARWLREHGVNFLQGYWISRPLPLDDFVKWLKK 512 (518)
T ss_pred E-ECCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 9-7688699999999769998856600568999999999747
No 94
>PRK00758 GMP synthase subunit A; Validated
Probab=92.31 E-value=0.39 Score=27.27 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=50.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHCCCCCCCCEEEE
Q ss_conf 78995399899999999999789899998897999999982799899995041296959-99999982857689959999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL-EITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~-el~~~ir~~~~~~~ipii~~ 82 (123)
|||+||.-...-..+.+.|...|+.+....+...+-+ +.+ .||-|++.= =|+..-. ...+.+++ .++||+.+
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~-i~~-~~dgiilS~-GP~~~~~~~~~~~i~~----~~iPiLGI 73 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEE-IKA-EPDGIILSG-GPEIERAGNCEEYLLE----LDVPILGI 73 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHH-HHH-CCCEEEECC-CCCCCCCCCHHHHHHH----CCCCEEEE
T ss_conf 9999989863899999999978992899959898999-963-899899889-9983332206999986----59988997
Q ss_pred E
Q ss_conf 9
Q gi|254780476|r 83 T 83 (123)
Q Consensus 83 t 83 (123)
-
T Consensus 74 C 74 (184)
T PRK00758 74 C 74 (184)
T ss_pred E
T ss_conf 1
No 95
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=91.51 E-value=0.82 Score=25.41 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=69.5
Q ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEEC-CC----CCHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 9999999997898999--98897999999982799899995041-29----69599999998285768995999992499
Q gi|254780476|r 15 MKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQL-QE----ISGLEITKQIKEDSELQEIPVIAVTAFAM 87 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~m-p~----~dG~el~~~ir~~~~~~~ipii~~t~~~~ 87 (123)
.....+.++..|+.+- -+.+|...+..+..-+||.|=+|-.+ -+ .....+++.+.+......+++| .++-..
T Consensus 134 ~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKld~~~v~~~~~~~~~~~~l~~l~~~a~~~~i~vi-aegVE~ 212 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVET 212 (240)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCH
T ss_conf 9999999986499688616899876689998678015440899997364682238999999999998499899-981850
Q ss_pred HHHHHHHHHCCCCE----EEECCCCH
Q ss_conf 89999999769988----99879898
Q gi|254780476|r 88 KGDEERIRKGGCEA----YISKPISL 109 (123)
Q Consensus 88 ~~~~~~~~~~g~~~----~l~KPi~~ 109 (123)
+.....+.+.|++. |+.||...
T Consensus 213 ~~~~~~l~~lgi~~~QG~~~~~P~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 99999999859999676912658999
No 96
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=91.29 E-value=0.69 Score=25.85 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=69.3
Q ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-C----CCHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 9999999997898999--988979999999827998999950412-9----69599999998285768995999992499
Q gi|254780476|r 15 MKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ-E----ISGLEITKQIKEDSELQEIPVIAVTAFAM 87 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp-~----~dG~el~~~ir~~~~~~~ipii~~t~~~~ 87 (123)
.......++..|+.+- -..+|...+..+..-+||.|=+|-.+= + .....+++.+-+..+...+++|+ ++-..
T Consensus 135 ~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKld~~li~~~~~~~~~~~~~~~l~~~a~~~g~~via-egVE~ 213 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA-EGVET 213 (241)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCC
T ss_conf 99999999970997875378998101899986572042247999961326845589999999999985998999-71881
Q ss_pred HHHHHHHHHCCCCE----EEECCCCHH
Q ss_conf 89999999769988----998798989
Q gi|254780476|r 88 KGDEERIRKGGCEA----YISKPISLS 110 (123)
Q Consensus 88 ~~~~~~~~~~g~~~----~l~KPi~~~ 110 (123)
......+.+.|++. |+.||...+
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~P~p~~ 240 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 999999997499998868647589999
No 97
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=91.21 E-value=1.3 Score=24.28 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=64.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEEEE---ECCC------CCHH----
Q ss_conf 987789953998999999999997898999-----988979999999827998999950---4129------6959----
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-----QTRNGMEALELARQHKPDVIIMDI---QLQE------ISGL---- 62 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-----~a~~g~eal~~l~~~~~dlillD~---~mp~------~dG~---- 62 (123)
|+-|||=+|.|+...+.-...-+..|..+. +-.-.+.-.+++.+++||++++-- ...+ ++-+
T Consensus 104 ~PGkVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSk 183 (287)
T pfam05582 104 RPGRVLHLDGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSK 183 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHH
T ss_conf 98628875498999999999999719845899836012529999999872899899958457633777734666654109
Q ss_pred ---HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC
Q ss_conf ---99999982857689959999924998999999976998
Q gi|254780476|r 63 ---EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE 100 (123)
Q Consensus 63 ---el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~ 100 (123)
|..+..|+-....+--|| -|.+=....+..+++|++
T Consensus 184 yFVeaVk~AR~y~p~~D~LVI--FAGACQS~yEall~AGAN 222 (287)
T pfam05582 184 YFVETVKEARKYEPSLDQLVI--FAGACQSHYEAIIEAGAN 222 (287)
T ss_pred HHHHHHHHHHHCCCCCCCEEE--ECCHHHHHHHHHHHCCCC
T ss_conf 999999999824899663899--821447889999972766
No 98
>PRK09776 putative sensor protein; Provisional
Probab=91.11 E-value=1.3 Score=24.22 Aligned_cols=108 Identities=14% Similarity=0.247 Sum_probs=79.5
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEEC----C-CCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 953998999999999997898999--98897999999982799899995041----2-9695999999982857689959
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQL----Q-EISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~m----p-~~dG~el~~~ir~~~~~~~ipi 79 (123)
+++|.....+.+ .-|+..|+.+. -..+|-..+..+++.++|.+=+|-.+ + +.+...+++.|-...+.-.+.+
T Consensus 993 l~~~~~~~~~~l-~~Lr~lGi~ialDDFGTGySSL~yLk~lPvD~LKID~sFV~~l~~~~~d~~iV~~Ii~la~~Lgl~v 1071 (1116)
T PRK09776 993 LLNHAEAASRLV-QKLRLAGCRVVLDDFGRGLSSFNYLKAFMADYLKIDGELCANLQGNLMDEMLVSIINGIAQRLGMKT 1071 (1116)
T ss_pred HHCCHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 334999999999-9999789999998997867899999728999899898997175799548999999999999878989
Q ss_pred EEEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHH
Q ss_conf 9999249989999999769988----998798989999999
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETI 116 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i 116 (123)
|+ -+-..+.......+.|++. |+.||...++|++.-
T Consensus 1072 VA-EGVEt~~ql~~L~~lGcd~~QGY~fsrP~Plee~l~~~ 1111 (1116)
T PRK09776 1072 IA-GPVELPLTLDTLSGIGVDLAQGYVIGRPQPLDLLLNSS 1111 (1116)
T ss_pred EE-CCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
T ss_conf 98-68880999999997799988755006478899984455
No 99
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=91.03 E-value=1.3 Score=24.18 Aligned_cols=92 Identities=14% Similarity=0.277 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEEC-CCCC-HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 399899999999999789899998---897999999982799899995041-2969-59999999828576899599999
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIALQT---RNGMEALELARQHKPDVIIMDIQL-QEIS-GLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~~dlillD~~m-p~~d-G~el~~~ir~~~~~~~ipii~~t 83 (123)
|-.+.-...+..+|+..||+|... .+.++-.+.+++++||+|-+...+ ...+ -.++++.+|+.. .+++|++ -
T Consensus 11 ~~~plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~--p~~~iv~-G 87 (121)
T pfam02310 11 DLHPLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIR--PGVKVVV-G 87 (121)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEE-E
T ss_conf 758489999999999859950010247999999999998099999995232112113689999999859--8975998-3
Q ss_pred ECCCHHHHHHHHH--CCCCEEE
Q ss_conf 2499899999997--6998899
Q gi|254780476|r 84 AFAMKGDEERIRK--GGCEAYI 103 (123)
Q Consensus 84 ~~~~~~~~~~~~~--~g~~~~l 103 (123)
|..-....+..++ .|++..+
T Consensus 88 G~~~t~~p~~~l~~~~~~D~vv 109 (121)
T pfam02310 88 GPHPTADPEEVLRAAPGIDDVV 109 (121)
T ss_pred CCCCCCCHHHHHHCCCCCCEEE
T ss_conf 8763418999984089975899
No 100
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.87 E-value=1.4 Score=24.09 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECC--HHHHH-HHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 9999999999978989999889--79999-999827998999950412969-5999999982857689959999924998
Q gi|254780476|r 13 LNMKLFRDLIETSGYIALQTRN--GMEAL-ELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 13 ~~~~~l~~~l~~~g~~v~~a~~--g~eal-~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
.-...+..+|++.|++|..... ..+.+ +.+++.+||+|-+....+... ..++++.+|+.. ++++|++ -|..-.
T Consensus 3 LGl~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~--p~~~iv~-GG~h~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVV-GGPHAT 79 (127)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHC--CCCEEEE-CCCCCC
T ss_conf 7999999999978995799857876203999986499699999976889999999999999978--9978998-598745
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 999999976998899879898999999999
Q gi|254780476|r 89 GDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 89 ~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
...+..++...-||+..-=--..+.+.++.
T Consensus 80 ~~p~~~l~~~~~D~vv~GEGE~t~~~ll~~ 109 (127)
T cd02068 80 FFPEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred CCHHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf 499999707587789968689999999999
No 101
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=90.86 E-value=1.4 Score=24.08 Aligned_cols=102 Identities=19% Similarity=0.338 Sum_probs=70.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCE-----EEEECCHHHHHHHHHHCCCCEEEE---EEECCCC------CHH----
Q ss_conf 9877899539989999999999978989-----999889799999998279989999---5041296------959----
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYI-----ALQTRNGMEALELARQHKPDVIIM---DIQLQEI------SGL---- 62 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~-----v~~a~~g~eal~~l~~~~~dlill---D~~mp~~------dG~---- 62 (123)
|+=|||=+|-|+...+.=-.+-+..|.. +.+..-.+.-..++..-+||++++ |-..... +.|
T Consensus 112 ~PGrVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSk 191 (292)
T TIGR02855 112 MPGRVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSK 191 (292)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCH
T ss_conf 88647742288889999999886619727999984121808899999730997899946663021678711364236656
Q ss_pred ---HHHHHHHH-CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf ---99999982-857689959999924998999999976998899879
Q gi|254780476|r 63 ---EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106 (123)
Q Consensus 63 ---el~~~ir~-~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP 106 (123)
+..+.+|. .|++-++ || + |.+=....+..+++||+ |=+=|
T Consensus 192 yFv~~V~~aR~~~P~lD~L-VI-F-AGACQShfE~li~AGAN-FASSP 235 (292)
T TIGR02855 192 YFVETVREARKYVPSLDQL-VI-F-AGACQSHFESLIRAGAN-FASSP 235 (292)
T ss_pred HHHHHHHHHHHHCCCCCCH-HH-H-HCCCHHHHHHHHHHCCC-CCCCC
T ss_conf 8999999986317875323-43-3-21214457999974565-45771
No 102
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=90.65 E-value=1.5 Score=23.97 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=67.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE--C--------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 778995399899999999999789899998--8--------979999999827998999950412969599999998285
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQT--R--------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS 72 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a--~--------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~ 72 (123)
+|||+.--+ ..+..+.+.|...|+.+... . ......+.+....+|.|+.--..--..=+++++......
T Consensus 127 ~~vL~~~g~-~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~~~~~~~~~~~~~ 205 (252)
T PRK05928 127 KRVLYLRGN-GGRPLLGDFLQERGADVDECEVYERKPPKLEGAEELIEELQTGEVDAIIFTSPSMVRAFLSLAPELYRRH 205 (252)
T ss_pred CEEEEEECC-CCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCHH
T ss_conf 879998167-6665789999977984799986576378888279999998628987999909999999999866403025
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHC
Q ss_conf 7689959999924998999999976998-8998798989999999997403
Q gi|254780476|r 73 ELQEIPVIAVTAFAMKGDEERIRKGGCE-AYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 73 ~~~~ipii~~t~~~~~~~~~~~~~~g~~-~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
...+++++.++ +.....+.+.|+. .+..+.-+.+.|++.+.++|.+
T Consensus 206 ~~~~~~iv~ig----~~ta~~~~~~G~~~~~~a~~~~~~~lv~al~~~l~~ 252 (252)
T PRK05928 206 WLLRCRAVAIG----KRTAEALKELGVKVVIVPDNADNEALLRALKKSLKK 252 (252)
T ss_pred HHHCCEEEEEC----HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 65188799989----999999998699817984999979999999999619
No 103
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=90.16 E-value=1.6 Score=23.72 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 999999999978989--999889799999998279989999504129-----6959999999828576899599999249
Q gi|254780476|r 14 NMKLFRDLIETSGYI--ALQTRNGMEALELARQHKPDVIIMDIQLQE-----ISGLEITKQIKEDSELQEIPVIAVTAFA 86 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~~~dlillD~~mp~-----~dG~el~~~ir~~~~~~~ipii~~t~~~ 86 (123)
....+-..|...|+. +.-..+|-..+..+++.+||.|=+|-.+=. ..+..+++.|-...+...+.+|+ -+-.
T Consensus 137 ~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vva-EGVE 215 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA-EGVE 215 (256)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEE-EECC
T ss_conf 999999999977998999789997165999985799749996999986303831179999999999974998999-7069
Q ss_pred CHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
Q ss_conf 989999999769988----998798989999999997
Q gi|254780476|r 87 MKGDEERIRKGGCEA----YISKPISLSIFMETIKKY 119 (123)
Q Consensus 87 ~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~~ 119 (123)
.++....+.+.|++. |+.||...+.+...+.+.
T Consensus 216 t~~ql~~L~~~G~~~~QGy~f~~P~~~~~~~~~~~~~ 252 (256)
T COG2200 216 TEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSSS 252 (256)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 6999999997799988547417889868999997520
No 104
>PRK10060 RNase II stability modulator; Provisional
Probab=90.01 E-value=1.7 Score=23.65 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=81.2
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 53998999999999997898999--988979999999827998999950412-----96959999999828576899599
Q gi|254780476|r 8 VEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 8 VDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii 80 (123)
++|.....+. -..|...|+.+- -..+|-..+..++..++|.|=+|-.+= +.....+++.|-...+.-.+.+|
T Consensus 537 ~~d~~~~~~~-l~~Lr~lGv~iALDDFGTGySSLsyL~~lPvd~lKIDrsFV~~i~~d~~~~aIV~aIi~LA~~Lgl~vV 615 (663)
T PRK10060 537 IENEELALSV-IQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI 615 (663)
T ss_pred HCCHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 2399999999-999997899899989999733699984289998999989971604892279999999999998699899
Q ss_pred EEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
Q ss_conf 999249989999999769988----998798989999999997
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETIKKY 119 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~~ 119 (123)
+ -+-..........+.|++. |+.||+..++|..-+.++
T Consensus 616 A-EGVEt~eQ~~~L~~lGcd~~QGy~fsrPmPa~ef~~wL~~~ 657 (663)
T PRK10060 616 A-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred E-ECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 9-13864999999997599998267536089999999999974
No 105
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=89.90 E-value=0.87 Score=25.27 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=53.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf 899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii 80 (123)
||+||.....-..+.++|+..|..+....+-+-.++.+.+..||.|++.-. -|...| .+..+.+. .++||+
T Consensus 2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~~~~~~~~~~-----~~iPIL 76 (195)
T PRK07649 2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFA-----GKIPIF 76 (195)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHC-----CCCCEE
T ss_conf 999958980799999999978997999889968999998419898998899999578476146799752-----899784
Q ss_pred EEE
Q ss_conf 999
Q gi|254780476|r 81 AVT 83 (123)
Q Consensus 81 ~~t 83 (123)
.+-
T Consensus 77 GIC 79 (195)
T PRK07649 77 GVC 79 (195)
T ss_pred EEC
T ss_conf 302
No 106
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=89.80 E-value=1.7 Score=23.55 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCEEEEECCC----HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 8778995399----89999999999978989999-889799999998279989999504129695999999982857689
Q gi|254780476|r 2 LKKVMIVEDN----ELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76 (123)
Q Consensus 2 ~kkiLiVDD~----~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ 76 (123)
|||||++=.- ....+-+++..+..|.++.. |.+..++-+.+....||++++.=+. .+ ....+++...-..
T Consensus 1 MkKILLvCaaGMSTSmlv~km~~~A~~~G~dveI~Av~~~e~~~~i~~~~yDv~LlgPQV----r~-~~~~~k~~a~~~g 75 (104)
T PRK09590 1 MAKALIICAAGMSSSLMAKKTTEFLKGKGKDIEVDAISATEGGKAIAAAAFDLYLVSPQT----KM-YFKQFEEAGSKAG 75 (104)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCEEEECHHH----HH-HHHHHHHHHHHCC
T ss_conf 955999968998799999999999997698369998488898876322688789988768----87-8999999998729
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 959999924998999999976998899879898999999999
Q gi|254780476|r 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
+||.++- ..+|..=|..++.+.+.|..
T Consensus 76 iPv~vI~---------------~~~Y~Plp~g~~k~~~~i~e 102 (104)
T PRK09590 76 KPVVQIP---------------PQAYIPIPMGIEKMANLILE 102 (104)
T ss_pred CCEEEEC---------------CCCCCCCCCCHHHHHHHHHH
T ss_conf 9778878---------------74645777788999999873
No 107
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=89.27 E-value=0.88 Score=25.25 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=58.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 899539989999999999978989999889799999998279989999504--129695999999982857689959999
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
||+||.....-..+.++|...|.++....+-+-.++.+....||.|++.-. -|...|. ....+|.. ...+||+.+
T Consensus 2 ILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~IvlSpGPg~P~~~~~-~~~~i~~~--~~~iPiLGI 78 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI-SLDVIRHY--AGRLPILGV 78 (187)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHH--CCCCCEEEE
T ss_conf 999968981899999999877997999938989999998429897999999999589084-04689975--389988998
Q ss_pred EECCCHHHHHHHHHCCCC
Q ss_conf 924998999999976998
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCE 100 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~ 100 (123)
-- +...-+...|..
T Consensus 79 Cl----G~Q~ia~~~Gg~ 92 (187)
T PRK08007 79 CL----GHQAMAQAFGGK 92 (187)
T ss_pred CH----HHHHHHHHCCCE
T ss_conf 79----999999980980
No 108
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=89.09 E-value=2 Score=23.24 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=77.6
Q ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 9999999997898999--988979999999827998999950412-----969599999998285768995999992499
Q gi|254780476|r 15 MKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAM 87 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~ 87 (123)
....-.-|...|+.+. -..+|-..+..++..++|.|=+|-.+= +-+...+++.|=+..+.-.+.+|+ -+-..
T Consensus 680 ~~~~l~~lr~~G~~ialDDFGtGyssl~~L~~lp~d~iKiD~~fv~~~~~~~~~~~iv~~ii~la~~l~~~vvA-EGVEt 758 (799)
T PRK11359 680 IFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA-EGVET 758 (799)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-CCCCC
T ss_conf 99999999978998999899998678999973899899989799617468953899999999999987998999-27980
Q ss_pred HHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
Q ss_conf 89999999769988----9987989899999999974
Q gi|254780476|r 88 KGDEERIRKGGCEA----YISKPISLSIFMETIKKYI 120 (123)
Q Consensus 88 ~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~~l 120 (123)
........+.|++. |+.||+..++|..-+..+.
T Consensus 759 ~~q~~~L~~~g~d~~QGy~~~kPlp~~~~~~wl~~~~ 795 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL 795 (799)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf 9999999975999896272262899999999984189
No 109
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=88.77 E-value=2.1 Score=23.11 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 8778995399899999999999789899998897999999982--79989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+++|..||-|......++..++..+..-...-. .+++..+.. ++||+|++|=--....-.++++.|....-++.--+
T Consensus 75 A~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~-~da~~~L~~~~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gl 153 (198)
T PRK10909 75 AAGATLLEMDRAVSQQLIKNLATLKAGNARVVN-TNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDAL 153 (198)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCE
T ss_conf 978999978999999999999984888679995-5699986255995218998999765559999999998889189969
Q ss_pred EEEEE
Q ss_conf 99992
Q gi|254780476|r 80 IAVTA 84 (123)
Q Consensus 80 i~~t~ 84 (123)
|++-.
T Consensus 154 iiiE~ 158 (198)
T PRK10909 154 IYVES 158 (198)
T ss_pred EEEEE
T ss_conf 99995
No 110
>PRK05670 anthranilate synthase component II; Provisional
Probab=88.25 E-value=1 Score=24.91 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=51.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 7899539989999999999978989999889799999998279989999504--12969599999998285768995999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
.|||||.....-..+.+.|...|+.+....+-.-..+.+....||.|++.-. -|...|. ....++... ..+||+.
T Consensus 1 miLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS~GPg~P~~~~~-~~~~i~~~~--~~iPiLG 77 (192)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLSPGPGTPAEAGI-SLELIREFA--GKVPILG 77 (192)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHHC--CCCCEEE
T ss_conf 9999968986899999999868996999989989999998509898999999999366055-499999734--6997899
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 82 VT 83 (123)
Q Consensus 82 ~t 83 (123)
+-
T Consensus 78 IC 79 (192)
T PRK05670 78 VC 79 (192)
T ss_pred EE
T ss_conf 84
No 111
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=88.11 E-value=1.8 Score=23.52 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=49.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHH---CCCCEEEEEEECCCC-CHHHHHHHHHHCCCCCC
Q ss_conf 778995399899999999999789899--998897999999982---799899995041296-95999999982857689
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIA--LQTRNGMEALELARQ---HKPDVIIMDIQLQEI-SGLEITKQIKEDSELQE 76 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v--~~a~~g~eal~~l~~---~~~dlillD~~mp~~-dG~el~~~ir~~~~~~~ 76 (123)
.|+.-+|=|+...+.-++.++..|+.- ..... .+|++.+.. .+||+||+|..=+.. .=++.+-.+ ++.
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~l-----Lr~ 158 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPL-----LRP 158 (219)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHCCCCCCCEEEEECCHHHCHHHHHHHHHH-----HCC
T ss_conf 7699970798999999999997597652898835-7479999733478856899837843599999999997-----378
Q ss_pred CCEEEEE
Q ss_conf 9599999
Q gi|254780476|r 77 IPVIAVT 83 (123)
Q Consensus 77 ipii~~t 83 (123)
--+|++-
T Consensus 159 GGliv~D 165 (219)
T COG4122 159 GGLIVAD 165 (219)
T ss_pred CCEEEEE
T ss_conf 9689983
No 112
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=87.04 E-value=2.2 Score=22.93 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=62.9
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEEC-------CHHHH-H----------------------HHHHHCCCCEEEEEEEC
Q ss_conf 953998999999999997898999988-------97999-9----------------------99982799899995041
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQTR-------NGMEA-L----------------------ELARQHKPDVIIMDIQL 56 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~a~-------~g~ea-l----------------------~~l~~~~~dlillD~~m 56 (123)
+||..+...+.+...|+..|+...... +|.+. + +...+...+..-...-+
T Consensus 24 LvDS~p~~~~a~~~~L~~lG~~~~~~e~vr~~iG~g~~~lv~r~L~~~~~~~~i~~~~~e~~~~~f~~~y~~~~~~~~ly 103 (272)
T PRK13223 24 LVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFMEAYAESHELTVVY 103 (272)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 65099999999999999888998999999999638899999998643245456679999999999999999736556768
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 29695999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY 119 (123)
Q Consensus 57 p~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~ 119 (123)
| +-.|+++.+++ +.+|+-++|++............|..+|+ .|| +|+.++.++++.
T Consensus 104 P--GV~e~L~~L~~----~Gi~laIvTnk~~~~~~~iL~~lgL~~~Fd~VvggDdv~~~KP-dP~~ll~ale~l 170 (272)
T PRK13223 104 P--GVRDTLKWLRK----QGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKP-DPAALLFVMKMA 170 (272)
T ss_pred C--CHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 4--79999999997----8997899639817899999987497241464534576999999-989999999995
No 113
>CHL00101 trpG anthranilate synthase component 2
Probab=87.02 E-value=1.7 Score=23.63 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=53.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf 899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii 80 (123)
|||||.-...-..+.+.+...|..+....+-.-.++.+....||.|++.-. -|...| .++.+.+. ..+||+
T Consensus 2 ILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS~GPg~p~~~~~~~~~~~~~~-----~~iPIL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIISPGPGHPRDSGISLDVISSYA-----PTIPIL 76 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHH-----CCCCEE
T ss_conf 999978880899999999868998999869989999997079798999799999578576168999971-----499878
Q ss_pred EEE
Q ss_conf 999
Q gi|254780476|r 81 AVT 83 (123)
Q Consensus 81 ~~t 83 (123)
.+-
T Consensus 77 GIC 79 (190)
T CHL00101 77 GVC 79 (190)
T ss_pred EEC
T ss_conf 973
No 114
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=86.94 E-value=2.7 Score=22.45 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCCEEEEECCCH--------HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCCHH---------
Q ss_conf 987789953998--------9999999999978989999889799999998279989999504-1296959---------
Q gi|254780476|r 1 MLKKVMIVEDNE--------LNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-LQEISGL--------- 62 (123)
Q Consensus 1 m~kkiLiVDD~~--------~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-mp~~dG~--------- 62 (123)
|.+||.|+=--. ...+.+.+.|...||++....-..+....++...||+++.=+. -++.||.
T Consensus 3 ~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~~~~~l~~~~~D~vf~~lHG~~GEDG~iQglLe~~~ 82 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDPAAELKELGFDRVFNALHGRGGEDGTIQGLLELLG 82 (304)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 77718999367871289999999999998837599799982896467787533999999906899985649999999859
Q ss_pred -----------------HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC------------HHHHH
Q ss_conf -----------------9999998285768995999992499899999997699889987989------------89999
Q gi|254780476|r 63 -----------------EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS------------LSIFM 113 (123)
Q Consensus 63 -----------------el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~------------~~~L~ 113 (123)
.+++++=+.......|-+.++..... .....+.|.- ++.||.+ .++|.
T Consensus 83 IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~--~~~~~~l~~P-~iVKP~~~GSSiGv~~V~~~~el~ 159 (304)
T PRK01372 83 IPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDL--LAAIDKLGLP-LVVKPAREGSSVGVTKVKEADELP 159 (304)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH--HHHHHHHCCC-EEEEECCCCCCCCEEEECCHHHHH
T ss_conf 9835799899877653899999999869998984998653139--9998761898-799766888666538966988999
Q ss_pred HHHHHHH
Q ss_conf 9999974
Q gi|254780476|r 114 ETIKKYI 120 (123)
Q Consensus 114 ~~i~~~l 120 (123)
..++.+.
T Consensus 160 ~ai~~a~ 166 (304)
T PRK01372 160 AALELAF 166 (304)
T ss_pred HHHHHHH
T ss_conf 9999987
No 115
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=86.91 E-value=1.5 Score=23.94 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=53.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 899539989999999999978989999889799999998279989999504--129695999999982857689959999
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
|||||.....-..+.+.|...|.++....+-+-.++-+....||.|++.=. -|...|. ....+|... ..+||+.+
T Consensus 2 ILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~ivLSpGPG~P~~~~~-~~~~i~~~~--~~iPILGI 78 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHVVISPGPCTPNEAGI-SLAVIRHFA--DKLPILGV 78 (191)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHCC-HHHHHHHHC--CCCCEEEE
T ss_conf 999969997699999999877995999869988999998539996999999989679073-068999744--69978861
Q ss_pred E
Q ss_conf 9
Q gi|254780476|r 83 T 83 (123)
Q Consensus 83 t 83 (123)
=
T Consensus 79 C 79 (191)
T PRK06774 79 C 79 (191)
T ss_pred H
T ss_conf 6
No 116
>KOG1562 consensus
Probab=86.75 E-value=2.8 Score=22.39 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=50.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHC--CCE---E-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 7899539989999999999978--989---9-99889799999998279989999504129695999999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETS--GYI---A-LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~--g~~---v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ 67 (123)
.|+++|-+....+.=+.++... ||+ | ....+|...++.+.++++|+|++|..=|.+.+..+.++
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 0675433678999999873887536789714899556899998703697418997167767558898888
No 117
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=86.28 E-value=0.8 Score=25.49 Aligned_cols=89 Identities=21% Similarity=0.168 Sum_probs=57.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCE-EEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH--HHHHHCCCCCC
Q ss_conf 9877899539989999999999978989-999-8897999999982799899995041296959999--99982857689
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYI-ALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEIT--KQIKEDSELQE 76 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~-v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~--~~ir~~~~~~~ 76 (123)
|++||.|||=|+....++.+.-+..|+. +.. ..+-..++---..++||+++.|=-= -..|+.+. |-|-.......
T Consensus 174 mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe-Ti~alk~FlgRGI~tLkg~~~ 252 (354)
T COG1568 174 MPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE-TIKALKLFLGRGIATLKGEGC 252 (354)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHH-HHHHHHHHHHCCHHHHCCCCC
T ss_conf 8733799831589999999999984833155403051045839888507764359633-579999998511887358874
Q ss_pred CCEEEEEECCCHHH
Q ss_conf 95999992499899
Q gi|254780476|r 77 IPVIAVTAFAMKGD 90 (123)
Q Consensus 77 ipii~~t~~~~~~~ 90 (123)
--...+|....+-+
T Consensus 253 aGyfgiT~ressid 266 (354)
T COG1568 253 AGYFGITRRESSID 266 (354)
T ss_pred CCEEEEEECCCCHH
T ss_conf 53686641426288
No 118
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=86.24 E-value=2.9 Score=22.23 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHHHHHCCC--EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE--EEECCCHH
Q ss_conf 9999999997898--999-988979999999827998999950412969599999998285768995999--99249989
Q gi|254780476|r 15 MKLFRDLIETSGY--IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA--VTAFAMKG 89 (123)
Q Consensus 15 ~~~l~~~l~~~g~--~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~--~t~~~~~~ 89 (123)
.+.+++.=+..+| .++ +++|-+|+.+.+... .|+|+|| +|+..++.+.++...... |-++ .||.-..+
T Consensus 173 ~~Av~~aR~~~~~~~kiEVEVenlE~a~eA~~AG-ADiImLD----Nm~p~~~~~av~~~~~~~--p~~~~EaSGGitl~ 245 (276)
T TIGR00078 173 EKAVKRARAALPFAKKIEVEVENLEEAEEAAEAG-ADIIMLD----NMKPEEIKEAVELLKGRN--PNVLVEASGGITLD 245 (276)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC-CCEEECC----CCCHHHHHHHHHHHHHCC--CEEEEEEECCCCHH
T ss_conf 9999999984899807998628989999999709-9599806----989479999999997029--90899983699878
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999999769988
Q gi|254780476|r 90 DEERIRKGGCEA 101 (123)
Q Consensus 90 ~~~~~~~~g~~~ 101 (123)
........|+|-
T Consensus 246 n~~~ya~~gVD~ 257 (276)
T TIGR00078 246 NIEEYAETGVDV 257 (276)
T ss_pred HHHHHHHCCCCE
T ss_conf 999984089758
No 119
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=85.64 E-value=3.1 Score=22.06 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=59.4
Q ss_pred CCEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 87789953998----9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.||+-++.+|- ...+.++..++..|.++.. ..+-...+..+++..||+|++- ....++..++++.++
T Consensus 132 ~k~vavi~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~ 209 (333)
T cd06358 132 ARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLST--LVGQDAVAFNRQFAA 209 (333)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHH
T ss_conf 978999926834658899999999997498599998279999789999999997498999993--777239999999997
Q ss_pred CCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 85768995999992499899999
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEER 93 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~ 93 (123)
..- ..+++..++...+.....
T Consensus 210 ~G~--~~~~~~~~~~~~~~~~~~ 230 (333)
T cd06358 210 AGL--RDRILRLSPLMDENMLLA 230 (333)
T ss_pred CCC--CCCEEEEECCCCHHHHHH
T ss_conf 699--987466645678799986
No 120
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=85.57 E-value=1.7 Score=23.66 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=55.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf 899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii 80 (123)
||+||.....-..+.+.|...|..+....+-+--++.+....|+.|++.-. -|...| .+..+.+ ...+||+
T Consensus 2 iLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~IilS~GPg~p~~~~~~~~~~~~~-----~~~iPIL 76 (192)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVISPGPCTPNEAGISLQAIEHF-----AGKLPIL 76 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHH-----CCCCCEE
T ss_conf 99997999779999999987799289996998999999842979599989999967828614669973-----5799989
Q ss_pred EEEECCCHHHHHHHHHCCCC
Q ss_conf 99924998999999976998
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCE 100 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~ 100 (123)
.+=- +...-+...|..
T Consensus 77 GICl----G~Q~ia~~~Gg~ 92 (192)
T PRK08857 77 GVCL----GHQAIAQVFGGD 92 (192)
T ss_pred EECH----HHHHHHHHHCCE
T ss_conf 9879----999999983982
No 121
>PRK11596 EAL domain-containing protein; Provisional
Probab=84.97 E-value=3.4 Score=21.87 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=69.9
Q ss_pred HHHCC-CEEEEECCHHHHHHHHHHCCCCEEEEEEEC-----CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 99789-899998897999999982799899995041-----296959999999828576899599999249989999999
Q gi|254780476|r 22 IETSG-YIALQTRNGMEALELARQHKPDVIIMDIQL-----QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 (123)
Q Consensus 22 l~~~g-~~v~~a~~g~eal~~l~~~~~dlillD~~m-----p~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~ 95 (123)
+...| +.+.-..+|-..+..+++-++|.|=+|-.+ .+..+..+++.|=+..+.-...+|+ -|-..........
T Consensus 149 l~~~~~lalDDFGTGySSLsyL~~lp~d~lKIDrsFv~~~~~~~~~~~iv~~ii~la~~Lg~~VVA-EGVET~eQ~~~L~ 227 (255)
T PRK11596 149 MCEFGPLWLDDFGTGMANFSALSEVRYDYIKVARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIV-EGVETPEEWRDVQ 227 (255)
T ss_pred HHHCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECCCHHHHHHHH
T ss_conf 985792888369886789999986899989987799854236963799999999999983990899-7098599999999
Q ss_pred HCCCCE----EEECCCCHHHHHHHH
Q ss_conf 769988----998798989999999
Q gi|254780476|r 96 KGGCEA----YISKPISLSIFMETI 116 (123)
Q Consensus 96 ~~g~~~----~l~KPi~~~~L~~~i 116 (123)
+.|++. |+.||+..++|.+..
T Consensus 228 ~~Gc~~~QGY~fsrP~p~d~l~~L~ 252 (255)
T PRK11596 228 RSPAFAAQGYFLSRPAPFDTLETLP 252 (255)
T ss_pred HCCCCEEECCCCCCCCCHHHHHHHH
T ss_conf 7699997458114179999999656
No 122
>PRK13229 consensus
Probab=84.87 E-value=2.2 Score=23.00 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=62.2
Q ss_pred CCCEEEE-------ECCCHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHH-H--HCC----------------
Q ss_conf 9877899-------53998999999999997898999988--------979999999-8--279----------------
Q gi|254780476|r 1 MLKKVMI-------VEDNELNMKLFRDLIETSGYIALQTR--------NGMEALELA-R--QHK---------------- 46 (123)
Q Consensus 1 m~kkiLi-------VDD~~~~~~~l~~~l~~~g~~v~~a~--------~g~eal~~l-~--~~~---------------- 46 (123)
|.+|++| +|..+.....+...++..|+....-. .+...++.. . ...
T Consensus 5 M~~klIiFDlDGTLvDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (234)
T PRK13229 5 MQKPIIVFDLDGTLVDTAPDLLDSLNHCLAASGLKPVDYGDLRRFVGQGARVMIERAFAAQGRQLDEAELDKLVEEFRAH 84 (234)
T ss_pred CCCCEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999989798883509999999999999987989999999999828777899999998717899999999999999999
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHH
Q ss_conf 989999504129695999999982857689959999924998999999976998899-----------879898999999
Q gi|254780476|r 47 PDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMET 115 (123)
Q Consensus 47 ~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~ 115 (123)
+.--+..-..|--+-.++++.+|+. .+++-++|+.............|..+|+ .|| +++.++.+
T Consensus 85 y~~~~~~~~~~~pGv~e~L~~L~~~----G~~laI~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~~~~~KP-~P~~~~~a 159 (234)
T PRK13229 85 YAAHMPGHSSPYPGLLEAMDRFASA----GYQLAVCTNKYEELSVKLLESLGLAARFAAICGGDTFSWRKP-DPRHLTET 159 (234)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHC----CCCEEECCCCHHHHHHHHHHCCCCHHHHCEEEECCCCCCCCC-CHHHHHHH
T ss_conf 9985220181574799999999977----997452169707888877521362123036761355778998-89999999
Q ss_pred HHHH
Q ss_conf 9997
Q gi|254780476|r 116 IKKY 119 (123)
Q Consensus 116 i~~~ 119 (123)
+++.
T Consensus 160 l~~l 163 (234)
T PRK13229 160 IARA 163 (234)
T ss_pred HHHH
T ss_conf 9981
No 123
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=84.64 E-value=3.5 Score=21.78 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=65.9
Q ss_pred CCEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8778995-3998---9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIV-EDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiV-DD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.|||-++ +|++ ...+.+++.++..|+++.. ..+-...+..+++..||.|++-.. ..++..+++++++
T Consensus 135 ~~~vaiv~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~--~~~~~~~~~~~~~ 212 (298)
T cd06268 135 VKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGY--GGDAALFLKQARE 212 (298)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHH
T ss_conf 85899977873467999999999899749989999964876577799999999769999999176--2678999999998
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8576899599999249989999999769988998798
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
..- ..|++..+............+..-..++.-|.
T Consensus 213 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 247 (298)
T cd06268 213 AGL--KVPIVGGDGAAAPALLELAGDAAEGVLGTTPY 247 (298)
T ss_pred CCC--CCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 299--97399956777789999788975887999856
No 124
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.62 E-value=3.5 Score=21.78 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEE---------CCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 989999999999978989999-889799999998279989999504---------1296959999999828576899599
Q gi|254780476|r 11 NELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQ---------LQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~---------mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
.....++++.+-+..|..+.. +++-+||+...+.. +|+|=.-+. .+....|++++++++. .+|+|
T Consensus 104 g~~~~~~i~~i~~~~~~l~MAD~st~eea~~A~~~G-~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~----~~pvI 178 (222)
T PRK01130 104 GETLAELVKRIKEKPGQLLMADCSTLEEGLAAAKLG-FDFIGTTLSGYTEYTEGETPEEPDFALLKELLKA----GCPVI 178 (222)
T ss_pred CCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC----CCCEE
T ss_conf 968999999999982987898548899999999849-9999723345676767787899869999999958----99899
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECC-C-CHHHHHHHHHHHH
Q ss_conf 99924998999999976998899879-8-9899999999974
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKP-I-SLSIFMETIKKYI 120 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KP-i-~~~~L~~~i~~~l 120 (123)
+=-....+....++++.|+...+.=- + +++..-....+.+
T Consensus 179 aEGri~tPe~a~~al~~GA~aVvVGsAITrP~~IT~~F~~ai 220 (222)
T PRK01130 179 AEGRINTPEQAKKALELGAHAVVVGSAITRPEEITKWFVDAL 220 (222)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 747989999999999849989998975479899999999997
No 125
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=84.42 E-value=1.8 Score=23.45 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=50.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf 899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii 80 (123)
|||||-....-..+.+.+...|+.+.....-.-..+.+....||.|++.-. -|...+ .++.+.++ ..+||+
T Consensus 1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~~~~~~~~l~-----~~iPiL 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALA-----GKVPIL 75 (184)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHH-----CCCCEE
T ss_conf 899937981799999999867995999989999999997329799999999989256146099999984-----699899
Q ss_pred EEE
Q ss_conf 999
Q gi|254780476|r 81 AVT 83 (123)
Q Consensus 81 ~~t 83 (123)
.+-
T Consensus 76 GIC 78 (184)
T cd01743 76 GVC 78 (184)
T ss_pred EEC
T ss_conf 980
No 126
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=84.20 E-value=3.7 Score=21.67 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=61.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 789953998999999999997898999988979-99999982--799899995041296959999999828576899599
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGM-EALELARQ--HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~-eal~~l~~--~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+||+|=-.+.....++..++..|+....-.+|. +.-..+.. ..+|+|++=.. .-+...+..+|+......+|++
T Consensus 1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~td---~vsH~~~~~vK~~akk~~~p~v 77 (96)
T pfam10087 1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFTD---CVSHDAMWRVKEEAKKRGIPVV 77 (96)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECC---CCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9999958556789999999983998999658987335567750589888999717---6687999999999998499789
Q ss_pred EEEECCCHHHHHHH
Q ss_conf 99924998999999
Q gi|254780476|r 81 AVTAFAMKGDEERI 94 (123)
Q Consensus 81 ~~t~~~~~~~~~~~ 94 (123)
+..+.+........
T Consensus 78 ~~~s~s~~~l~~~l 91 (96)
T pfam10087 78 FSRSRSLSALERAL 91 (96)
T ss_pred EECCCCHHHHHHHH
T ss_conf 97687499999999
No 127
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=82.67 E-value=4.3 Score=21.31 Aligned_cols=95 Identities=18% Similarity=0.346 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEECCC-CCH-HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 399899999999999789899998---89799999998279989999504129-695-9999999828576899599999
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIALQT---RNGMEALELARQHKPDVIIMDIQLQE-ISG-LEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~~dlillD~~mp~-~dG-~el~~~ir~~~~~~~ipii~~t 83 (123)
|-...=..++..+|+..||+|.-- -..+..++.++++.||+|-+...|-- +.. -++.+.+|+.. . ++||+ +-
T Consensus 99 D~HdiGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~divglSallTtTm~~mk~vi~~l~~~g-~-~vkv~-vG 175 (213)
T cd02069 99 DVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRG-I-KIPLL-IG 175 (213)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-C-CEEEE-EC
T ss_conf 634121899999999789668850589989999999997499999983230304999999999999749-9-81799-71
Q ss_pred ECCC-HHHHHHH---HHCCCCEEEECC
Q ss_conf 2499-8999999---976998899879
Q gi|254780476|r 84 AFAM-KGDEERI---RKGGCEAYISKP 106 (123)
Q Consensus 84 ~~~~-~~~~~~~---~~~g~~~~l~KP 106 (123)
+.+. +....+. .-.|++.|-.-.
T Consensus 176 Ga~vt~~fa~~~~~~~y~Gad~y~~dA 202 (213)
T cd02069 176 GAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEECCH
T ss_conf 632788899876410367980784399
No 128
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=82.48 E-value=4.3 Score=21.26 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCEEEEECCCHHH----HHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 8778995399899----9999999997898999988---------97999999982799899995041296959999999
Q gi|254780476|r 2 LKKVMIVEDNELN----MKLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 (123)
Q Consensus 2 ~kkiLiVDD~~~~----~~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i 68 (123)
.||+|||-|.... .+.+.+.|+..|..+...+ +..++.+.++++.+|+|+- +-+.+-++.++.+
T Consensus 29 ~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~Iia---vGGGSviD~AKai 105 (381)
T PRK10624 29 YHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADYLIA---IGGGSPQDTCKAI 105 (381)
T ss_pred CCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCHHHHHHHHH
T ss_conf 9879999696545563699999999876983999889258989999999999998649998998---0894088899999
Q ss_pred H---HCC--------------CCCCCCEEEEEECCCHHH
Q ss_conf 8---285--------------768995999992499899
Q gi|254780476|r 69 K---EDS--------------ELQEIPVIAVTAFAMKGD 90 (123)
Q Consensus 69 r---~~~--------------~~~~ipii~~t~~~~~~~ 90 (123)
. .++ ..+.+|+|.+.+-...+.
T Consensus 106 a~~~~~~~~~~~~~~~g~~~~~~~~lP~iaIPTTaGTGS 144 (381)
T PRK10624 106 GIISNNPEFADVRSLEGLAPTKKPSVPIIAIPTTAGTAA 144 (381)
T ss_pred HHHHCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 999709851147875265655578888899748976776
No 129
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.36 E-value=4.4 Score=21.24 Aligned_cols=106 Identities=10% Similarity=0.026 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 989999999999978989--999889799999998279989999504129695999999982857689959999924998
Q gi|254780476|r 11 NELNMKLFRDLIETSGYI--ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
|...-..+++-|..-... +..........+.+...-||.+++|.+=-..|--++...++........|++=+ ....+
T Consensus 3 ~~~~pN~lk~~L~~g~~~~G~~~~~~sp~~~Ei~a~~G~Dfv~iD~EHg~~~~~~l~~~i~a~~~~~~~~lVRv-p~~~~ 81 (256)
T PRK10558 3 NDVFPNKFKAALAAKQVQIGCWSALSNPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEP 81 (256)
T ss_pred CCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEC-CCCCH
T ss_conf 86578099999977997799885789989999997289899998377899999999999999971799748967-88988
Q ss_pred HHHHHHHHCCCCEEEECCC-CHHHHHHHHH
Q ss_conf 9999999769988998798-9899999999
Q gi|254780476|r 89 GDEERIRKGGCEAYISKPI-SLSIFMETIK 117 (123)
Q Consensus 89 ~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~ 117 (123)
....++++.|+++.+.-=+ +.++..+.++
T Consensus 82 ~~i~r~LD~Ga~GvivP~V~s~eea~~~V~ 111 (256)
T PRK10558 82 VIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 999999707987556147699999999998
No 130
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=82.03 E-value=4.5 Score=21.16 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCEEEEECCC-----HHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 98778995399-----899999999999789899998897-999999982799899995041296959999999828576
Q gi|254780476|r 1 MLKKVMIVEDN-----ELNMKLFRDLIETSGYIALQTRNG-MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 (123)
Q Consensus 1 m~kkiLiVDD~-----~~~~~~l~~~l~~~g~~v~~a~~g-~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~ 74 (123)
|+||||++=-+ ....+-++++++..|+.+.....- .|.-. ....+|+++.-...|. .+
T Consensus 1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~~--~~~~~DlivtTt~~~~--------------~~ 64 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET--YMDGVHLICTTARVDR--------------SF 64 (94)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHH--CCCCCCEEEEECCCCC--------------CC
T ss_conf 9955999858837599999999999999859806899974787554--1689778999225377--------------65
Q ss_pred CCCCEE----EEEECCCHHHHHHHHH
Q ss_conf 899599----9992499899999997
Q gi|254780476|r 75 QEIPVI----AVTAFAMKGDEERIRK 96 (123)
Q Consensus 75 ~~ipii----~~t~~~~~~~~~~~~~ 96 (123)
.++|+| ++|+.......++.++
T Consensus 65 g~iPvi~g~~fLTGiG~d~~~~~Il~ 90 (94)
T PRK10310 65 GDIPLVHGMPFVSGVGIEALQNKILT 90 (94)
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 88877963420003788999999999
No 131
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=81.67 E-value=4.6 Score=21.09 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=51.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHC----CCCEEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 77899539989999999999978989--99-988979999999827----998999950412969599999998285768
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYI--AL-QTRNGMEALELARQH----KPDVIIMDIQLQEISGLEITKQIKEDSELQ 75 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~--v~-~a~~g~eal~~l~~~----~~dlillD~~mp~~dG~el~~~ir~~~~~~ 75 (123)
-+|.-+|=|+...+..+++++..|+. +. ...++.+.++.+.++ +||+|++|..=. +-.+.+..+.. .++
T Consensus 70 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDadK~--~Y~~y~e~~~~--lL~ 145 (204)
T pfam01596 70 GKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFAFVDADKS--SYPNYYERLLE--LVK 145 (204)
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCHH--HHHHHHHHHHH--HHC
T ss_conf 68999980489999999999977987447999874999999998447777643899818887--77999999998--636
Q ss_pred CCCEEEEEEC
Q ss_conf 9959999924
Q gi|254780476|r 76 EIPVIAVTAF 85 (123)
Q Consensus 76 ~ipii~~t~~ 85 (123)
.=-+|++-..
T Consensus 146 ~gGiii~DNv 155 (204)
T pfam01596 146 VGGLIAIDNT 155 (204)
T ss_pred CCEEEEEECC
T ss_conf 9809999445
No 132
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=81.55 E-value=3 Score=22.14 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=57.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH--HHHHHCCCCCCC
Q ss_conf 9877899539989999999999978989999-8897999999982799899995041296959999--999828576899
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEIT--KQIKEDSELQEI 77 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~--~~ir~~~~~~~i 77 (123)
+.++|.|||=|+...+++.+..+..|+.+.+ ..+-...+----...||+++.|=-= -..|+.+. |.|-........
T Consensus 66 ~p~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TDPPy-T~~G~~LFlsRgi~~Lk~eg~a 144 (243)
T pfam01861 66 LPKRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITDPPE-TVDGLKAFLGRGIATLKGEGCA 144 (243)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECCCCC-CHHHHHHHHHHHHHHHCCCCCC
T ss_conf 985489996758999999999997499716887410148999996167989718998-7789999999999982668852
Q ss_pred CEEEEEECC
Q ss_conf 599999249
Q gi|254780476|r 78 PVIAVTAFA 86 (123)
Q Consensus 78 pii~~t~~~ 86 (123)
-...+|-..
T Consensus 145 gYfglt~~e 153 (243)
T pfam01861 145 GYFGITHRE 153 (243)
T ss_pred CEEEEECCC
T ss_conf 268764260
No 133
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=81.42 E-value=4.7 Score=21.03 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=61.2
Q ss_pred HHCCCEEEEECCHH--------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 97898999988979--------9999998279989999504129695999999982857689959999924998999999
Q gi|254780476|r 23 ETSGYIALQTRNGM--------EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 23 ~~~g~~v~~a~~g~--------eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
...+..+..+.+|. +....+.++.||+++.=.-=|..-|-.-+|.+-+. ..+|.|++|........+..
T Consensus 28 dRedI~vrv~gsGaKm~pe~~~~v~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~kd~l 104 (276)
T PRK00994 28 DREDIDVRVVGSGAKMGPEEVERVVKKMKEWKPDFIIVISPNPAAPGPTKAREILSA---AGIPCIVIGDAPGKKKKDAM 104 (276)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHH
T ss_conf 346854999526677797899999999884089989997899889995679999975---69988997488533148899
Q ss_pred HHCCCCEEEECC
Q ss_conf 976998899879
Q gi|254780476|r 95 RKGGCEAYISKP 106 (123)
Q Consensus 95 ~~~g~~~~l~KP 106 (123)
.+.|+-.++.|.
T Consensus 105 ~~~g~GYIivk~ 116 (276)
T PRK00994 105 EEQGFGYIIVKA 116 (276)
T ss_pred HHCCCCEEEEEC
T ss_conf 864984799836
No 134
>PRK13138 consensus
Probab=81.23 E-value=4.8 Score=21.00 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999999828576899599999249------9899999997699889987989
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPIS 108 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~ 108 (123)
|++++++|. ...++|++++|.++ .+....++.++|+++.+.--+.
T Consensus 78 ~~~~~~ir~--~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP 128 (264)
T PRK13138 78 LEITAEIHK--LHPEIPLVYLTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLP 128 (264)
T ss_pred HHHHHHHCC--CCCCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 446776033--589888897521238988489999999987697758536898
No 135
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=80.81 E-value=5 Score=20.91 Aligned_cols=113 Identities=14% Similarity=0.227 Sum_probs=78.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHC
Q ss_conf 87789953998999999999997898999988---------979999999827998999950412969599-99999828
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLE-ITKQIKED 71 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~e-l~~~ir~~ 71 (123)
.+||||+=-+ --|+.+.+-|...|..|..+. +..+..+.+....+|+|++--. .+++ +++.+...
T Consensus 130 g~rVLi~rG~-gGR~~L~~~L~~rGa~V~~~~~YrR~~p~~~~~~~~~~~~~~~id~i~~TS~----e~l~~l~~l~~~~ 204 (255)
T PRK05752 130 DPRVLIMRGE-GGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSG----QGFEHLLQLAGAD 204 (255)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCH----HHHHHHHHHHHHH
T ss_conf 8879998167-6178999999988998989987884389998499999998089999998819----9999999971045
Q ss_pred -CCCCCCCEEEEEECCCHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHHHCC
Q ss_conf -5768995999992499899999997699889-987989899999999974039
Q gi|254780476|r 72 -SELQEIPVIAVTAFAMKGDEERIRKGGCEAY-ISKPISLSIFMETIKKYIGEA 123 (123)
Q Consensus 72 -~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~-l~KPi~~~~L~~~i~~~l~~a 123 (123)
+.+..+|+++.| +-..+.+.+.|+... +.++-+.+.|++.+.++.+-|
T Consensus 205 ~~~l~~~~lvv~s----~RiA~~A~~lG~~~v~~a~~as~~all~AL~~~~ap~ 254 (255)
T PRK05752 205 WPELARLPLFVPS----PRVAEQARAAGAQRVVDCRGASAAALLAALRRQAAPA 254 (255)
T ss_pred HHHHCCCCEEEEC----HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 7986388399838----9999999986999668899999799999999853478
No 136
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=80.78 E-value=4.9 Score=20.93 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=51.6
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCC--CCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99539989999999999978989999889799999998279989999504--129--69599999998285768995999
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQE--ISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~--~dG~el~~~ir~~~~~~~ipii~ 81 (123)
||||--..+-..+.+.|...|+.+........+.+......||.|++.-. -|. ..-.++.+++.+ ..+||+.
T Consensus 1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~----~~~PiLG 76 (187)
T pfam00117 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGGAIEAIKELRE----NKIPILG 76 (187)
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHH----CCCCEEE
T ss_conf 989378638999999998689979999899986999852599989991998611013458999999997----7998999
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 82 VT 83 (123)
Q Consensus 82 ~t 83 (123)
+-
T Consensus 77 IC 78 (187)
T pfam00117 77 IC 78 (187)
T ss_pred EE
T ss_conf 98
No 137
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=80.67 E-value=5 Score=20.88 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=39.8
Q ss_pred HHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 999827998999950412969-599999998285768995999992499899999997699889
Q gi|254780476|r 40 ELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 40 ~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+.+-+.-.|+|++|.-=-.-. =++.+++||+. +.++|||+ -+-...+......++|++..
T Consensus 229 ~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~~--~p~~~iIa-GNVaT~e~a~~Li~aGAD~v 289 (467)
T pfam00478 229 EALVEAGVDVIVIDSAHGHSEYVLEMIKWIKKK--YPDLDVIA-GNVVTAEAARELIDAGADAV 289 (467)
T ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEE-EEECCHHHHHHHHHHCCCEE
T ss_conf 999876998899734454418899999998740--78773785-10058999999997077757
No 138
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=79.51 E-value=4 Score=21.46 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=58.1
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEECCH--------HHHH------------H-HHHH--CCCCEEEEEEECCCCCH-H
Q ss_conf 95399899999999999789899998897--------9999------------9-9982--79989999504129695-9
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQTRNG--------MEAL------------E-LARQ--HKPDVIIMDIQLQEISG-L 62 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~a~~g--------~eal------------~-~l~~--~~~dlillD~~mp~~dG-~ 62 (123)
+||..+.....+...+...|+.......- ...+ + ...+ +.+.-.+ ....+-.+| .
T Consensus 15 LvDS~~~~~~~~~~~l~~~g~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~pGv~ 93 (221)
T PRK13226 15 LLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGSRAMLAVAFAELDAAARQALVPEFLQRYEALI-GTQSQLFDGVE 93 (221)
T ss_pred HHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHH
T ss_conf 45189999999999999886999999999999523488887510346899999999999999999976-21486456799
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 99999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY 119 (123)
Q Consensus 63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~ 119 (123)
++++.+|+ +.+++-++|++.....+......|..+|+ .|| +++-++.++++.
T Consensus 94 e~L~~L~~----~g~~~~VvTnk~~~~~~~~l~~~gl~~~F~~iv~~ddv~~~KP-~Pd~~l~a~~~l 156 (221)
T PRK13226 94 MMLARLEC----AGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKP-HPLPLLTAAERI 156 (221)
T ss_pred HHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 99999997----7990898559818889999998398522330001444567788-869999999994
No 139
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=79.48 E-value=5.5 Score=20.65 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=53.3
Q ss_pred CCEEEEECCCHHHH---HHHHHHHHHCCCEEEEE--------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 87789953998999---99999999789899998--------89799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIVEDNELNM---KLFRDLIETSGYIALQT--------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~~~~---~~l~~~l~~~g~~v~~a--------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.||+|||-|..... +.+...|+..|+++... .+.+++.+..+++.+|+|+- +-+.+-+++++.+..
T Consensus 29 G~r~liVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~pt~~~v~~~~~~~~~~~~D~Iia---vGGGS~iD~AKaia~ 105 (366)
T PRK09423 29 GKRALLIADEFVLGIVGDTVEASLKDAGLDVVFEVFNGECSDNEIDRLVAIAEENGCDVIIG---IGGGKTLDTAKAVAD 105 (366)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHHHHH
T ss_conf 99589998952899899999999986798699973389999999999999998649998999---378388777999999
Q ss_pred CCCCCCCCEEEEEEC
Q ss_conf 857689959999924
Q gi|254780476|r 71 DSELQEIPVIAVTAF 85 (123)
Q Consensus 71 ~~~~~~ipii~~t~~ 85 (123)
. ..+|+|.+-+.
T Consensus 106 ~---~~~P~i~IPTt 117 (366)
T PRK09423 106 Y---LGVPVVIVPTI 117 (366)
T ss_pred H---CCCCEEEECCC
T ss_conf 8---28997995686
No 140
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=79.41 E-value=5.6 Score=20.64 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCC---CHH-------------------HHHHHHHHCCCCCCCCEEEEE--ECCCHH
Q ss_conf 97999999982799899995041296---959-------------------999999828576899599999--249989
Q gi|254780476|r 34 NGMEALELARQHKPDVIIMDIQLQEI---SGL-------------------EITKQIKEDSELQEIPVIAVT--AFAMKG 89 (123)
Q Consensus 34 ~g~eal~~l~~~~~dlillD~~mp~~---dG~-------------------el~~~ir~~~~~~~ipii~~t--~~~~~~ 89 (123)
+..||.++++++ |+++|+|+.-|.. .|. +++.++.+.. .++.||+++- +.-...
T Consensus 2 tp~eA~e~L~~~-~~~~lIDVRt~~E~~~~G~ipga~~I~~~~~~~~~~~~~f~~~l~~~~-~~d~~ivv~C~sG~RS~~ 79 (117)
T cd01522 2 TPAEAWALLQAD-PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKV-GKDRPVLLLCRSGNRSIA 79 (117)
T ss_pred CHHHHHHHHHHC-CCEEEEECCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHC-CCCCEEEEECCCCCHHHH
T ss_conf 989999999849-983999899889998629888851120343112245812789999745-999869998899815999
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999999769988
Q gi|254780476|r 90 DEERIRKGGCEA 101 (123)
Q Consensus 90 ~~~~~~~~g~~~ 101 (123)
......+.|+..
T Consensus 80 Aa~~L~~~Gf~n 91 (117)
T cd01522 80 AAEAAAQAGFTN 91 (117)
T ss_pred HHHHHHHCCCCC
T ss_conf 999999859877
No 141
>PRK09482 xni exonuclease IX; Provisional
Probab=79.38 E-value=5.6 Score=20.64 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=51.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH-HHHHHHCCCCEEEEEEECCCCC---HHHHHHHHHHCCCCCC
Q ss_conf 98778995399899999999999789899998897999-9999827998999950412969---5999999982857689
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEIS---GLEITKQIKEDSELQE 76 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~ea-l~~l~~~~~dlillD~~mp~~d---G~el~~~ir~~~~~~~ 76 (123)
||+|+|+||-+....+.+-. +.+.+...-.......+ .+++++++|+-+++=+.-+... =.++...-|++.. .
T Consensus 1 Mm~~llLIDG~~l~~Ray~a-~p~~~~~~~~~~~~~~~l~kli~~~~P~~i~v~fD~~~~~~~fR~e~~~~YKanR~--~ 77 (256)
T PRK09482 1 MMNHLLIIDALNLIRRIHAV-QPSPNDIAACVETCQHALDKLIRHSQPTHAVAVFDGDERSSGWRHQLLPDYKAGRK--P 77 (256)
T ss_pred CCCCEEEECCCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCC--C
T ss_conf 99728998462899999843-77899988678999999999999719987999984799876537776488760999--9
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 959999924998999999976998899879898999999999
Q gi|254780476|r 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
.|=-+.. ..+...+-+...|+.-+-..-+..+.+..++.+
T Consensus 78 ~pd~L~~--Q~~~i~~~l~~~gi~~~~~~g~EADDiIatla~ 117 (256)
T PRK09482 78 MPEALAQ--GLPAIRAAFEELGIDSWLADGNEADDLIATLAV 117 (256)
T ss_pred CCHHHHH--HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 9989999--999999999977998983578148899999999
No 142
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=78.46 E-value=5.9 Score=20.47 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 8778995399899999999999789--89999889799999998279989999504129695999999982857689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
+.++++.++|+...+.+.++-+.|| |.+....+...-++-+++ .=+++-+.|=+.+=-++...||.... .-|+
T Consensus 31 A~~i~l~~~D~~~~etv~~V~~rwGG~F~~e~~~~~~~~ir~~k~---~G~vVHLTMYG~~i~~~~~~Ir~~~~--~~~i 105 (175)
T PRK03958 31 ADKILFASEDEHVKESVEDIVERWGGPFKVEVTKSWKKYIREFKD---GGIVVHLTMYGENINDVMDEIREAKT--CKPL 105 (175)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHCCC--CCCE
T ss_conf 876787688766899999999861896699976897999863025---88899983688866787767653057--8878
Q ss_pred EEEE-ECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999-249989999999769988998798
Q gi|254780476|r 80 IAVT-AFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 80 i~~t-~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
+++. +.--+.+.-+..+..+ +.=+.|-
T Consensus 106 lvVVGaeKVP~evyelADyNV-aVgNQPH 133 (175)
T PRK03958 106 LIIVGAEKVPREVYELADYNV-AVGNQPH 133 (175)
T ss_pred EEEECCCCCCHHHHHHCCCCE-EECCCCC
T ss_conf 999678869988974345415-5178870
No 143
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=78.44 E-value=6 Score=20.47 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEE------EECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHH
Q ss_conf 99999997898999-98897999999982799899995------041296959999999828576899599999249989
Q gi|254780476|r 17 LFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMD------IQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKG 89 (123)
Q Consensus 17 ~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD------~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~ 89 (123)
-+-+.....+..+. -+++-+||+...+.. +|+|=.- ..-+....|++++++++. .+|||+=-....+.
T Consensus 83 ~lv~~i~~~~~l~MAD~st~eea~~A~~~G-~D~I~TTL~GYT~~t~~~~pD~~ll~~l~~~----~~pvIaEGri~tPe 157 (192)
T pfam04131 83 SFIKRIKEKGQLAMADCSTFEEGLNAHKLG-VDIVGTTLSGYTGGSNPAEPDFQLVKTLSEA----GCFVIAEGRYNTPE 157 (192)
T ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCHHHHHHHHHC----CCCEEEECCCCCHH
T ss_conf 999999981998899749999999999859-9999823255789999999978999999868----99399857989999
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 99999976998899879
Q gi|254780476|r 90 DEERIRKGGCEAYISKP 106 (123)
Q Consensus 90 ~~~~~~~~g~~~~l~KP 106 (123)
...++++.|+...+.=-
T Consensus 158 ~a~~a~~~GA~aVVVGs 174 (192)
T pfam04131 158 LAKKAIEIGADAVTVGS 174 (192)
T ss_pred HHHHHHHCCCCEEEECC
T ss_conf 99999983998999896
No 144
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=78.40 E-value=6 Score=20.46 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=43.2
Q ss_pred HHHHHHHHCC-CCEEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999998279-989999504129-695--9999999828576899599999249989999999769988998
Q gi|254780476|r 37 EALELARQHK-PDVIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 37 eal~~l~~~~-~dlillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
+.++.+.+.. -.++++|+.--+ +.| +++++++++. .++|+++--+-...++..+..+.|+++.+.
T Consensus 151 ~~i~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~---~~~pii~~GGv~~~~di~~l~~~g~~gviv 219 (229)
T pfam00977 151 EWAKKLEELGAGEILLTDIDRDGTLSGPDLELTRELAEA---VNIPVIASGGVGSLEDLKELFSEGVDGVIA 219 (229)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 445677651675068877504275666899999999976---899899985899999999999879989998
No 145
>PRK13118 consensus
Probab=78.37 E-value=6 Score=20.45 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 99999998285768995999992499------899999997699889987989899
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAM------KGDEERIRKGGCEAYISKPISLSI 111 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~------~~~~~~~~~~g~~~~l~KPi~~~~ 111 (123)
|++++++|+. ..++|++++|.++. +....++.+.|+++.+.--+.+++
T Consensus 82 ~~~v~~~r~~--~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~ee 135 (269)
T PRK13118 82 LQMVREFRQG--DQTTPVVLMGYLNPIEIYGYERFVAQAKEAGVDGLILVDLPPEE 135 (269)
T ss_pred HHHHHHHHHC--CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 9999998643--89999899740007878639999999998599746458999789
No 146
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.35 E-value=6 Score=20.45 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=52.2
Q ss_pred CCEEEEEC--CCHHHH---HHHHHHHHHCCCEEEEECCHHHHHH-----HHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 87789953--998999---9999999978989999889799999-----9982799899995041296959999999828
Q gi|254780476|r 2 LKKVMIVE--DNELNM---KLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 2 ~kkiLiVD--D~~~~~---~~l~~~l~~~g~~v~~a~~g~eal~-----~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
+|||+||= +++... +.+.++|+..|+++....++.+... ....+.+|+++.= +.|| .+++..|..
T Consensus 3 lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l----GGDG-T~L~aar~~ 77 (304)
T PRK02645 3 LKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIVL----GGDG-TVLAAARHL 77 (304)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE----CCCH-HHHHHHHHH
T ss_conf 45999998589999999999999999988899998444344477762001446688899997----8688-999999985
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 57689959999924998999999976998899879898
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~ 109 (123)
...++||+.+... |--+||+.|.+.
T Consensus 78 -~~~~iPilGiN~~------------G~lGFLte~~~~ 102 (304)
T PRK02645 78 -APHDIPILSFNVG------------GHLGFLTHPRDL 102 (304)
T ss_pred -CCCCCCEEEEECC------------CEEEEECCCCCC
T ss_conf -4269988998248------------646971676422
No 147
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.05 E-value=6.1 Score=20.40 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-------CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHH
Q ss_conf 9999997898999-988979999999827998999950412-------96959999999828576899599999249989
Q gi|254780476|r 18 FRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQ-------EISGLEITKQIKEDSELQEIPVIAVTAFAMKG 89 (123)
Q Consensus 18 l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp-------~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~ 89 (123)
+.+.++..|..+. .+.+.++|.+..+. -+|.|+.--.=. ..+-+.++.++|+.. ++|||+=-+-....
T Consensus 94 ~v~~l~~~g~~v~~~v~s~~~A~~a~~~-GaD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~---~ipviaAGGI~~g~ 169 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAA-GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGR 169 (236)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH---CCCEEEECCCCCHH
T ss_conf 9999998299899958989999999981-8998999777777788987555677999999982---98689654627789
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999999769988998
Q gi|254780476|r 90 DEERIRKGGCEAYIS 104 (123)
Q Consensus 90 ~~~~~~~~g~~~~l~ 104 (123)
+...++.+|+++...
T Consensus 170 ~i~aal~lGA~gV~~ 184 (236)
T cd04730 170 GIAAALALGADGVQM 184 (236)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999808979995
No 148
>PRK13337 putative lipid kinase; Reviewed
Probab=77.94 E-value=6.2 Score=20.38 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=47.9
Q ss_pred CCCEEEEECCC-------HHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHH---HCCCCEEEEEEECCCCCH--HHHHH
Q ss_conf 98778995399-------89999999999978989999--889799999998---279989999504129695--99999
Q gi|254780476|r 1 MLKKVMIVEDN-------ELNMKLFRDLIETSGYIALQ--TRNGMEALELAR---QHKPDVIIMDIQLQEISG--LEITK 66 (123)
Q Consensus 1 m~kkiLiVDD~-------~~~~~~l~~~l~~~g~~v~~--a~~g~eal~~l~---~~~~dlillD~~mp~~dG--~el~~ 66 (123)
||||++++-+- ....+.+...|+..|+++.. .....+|.+.++ .+.+|+|+.= +-|| -|++.
T Consensus 1 mmkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~T~~~g~a~~~a~~~~~~~~d~vv~~----GGDGTv~evvn 76 (305)
T PRK13337 1 MMKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAARQAAERNFDLVIAA----GGDGTLNEVVN 76 (305)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE----ECCHHHHHHHH
T ss_conf 98459999997568864677899999999987996999982780289999999877799989999----57628999999
Q ss_pred HHHHCCCCCCCCEEEEE
Q ss_conf 99828576899599999
Q gi|254780476|r 67 QIKEDSELQEIPVIAVT 83 (123)
Q Consensus 67 ~ir~~~~~~~ipii~~t 83 (123)
.+...+ ...|+=++-
T Consensus 77 gl~~~~--~~~~lgiiP 91 (305)
T PRK13337 77 GLAEKE--NRPKLGIIP 91 (305)
T ss_pred HHHCCC--CCCEEEEEE
T ss_conf 985589--986289970
No 149
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=77.50 E-value=6.4 Score=20.31 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHH--HCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 877899539989999999999978989999-889799999998--27998999950412969599999998285768995
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELAR--QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~--~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
++++..||-|....+.++..++..++.-.. ..+....+.... .++||+|++|=--....--+++..|.+..-+..--
T Consensus 66 A~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l~~~~ 145 (181)
T pfam03602 66 ASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLDPPYAKGLIEEALELLAEKGWLNPNA 145 (181)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 98899996999999999999998589977998108999987533578887663599754206999999999666657980
Q ss_pred EEEEE
Q ss_conf 99999
Q gi|254780476|r 79 VIAVT 83 (123)
Q Consensus 79 ii~~t 83 (123)
+|++-
T Consensus 146 iiiiE 150 (181)
T pfam03602 146 LIVVE 150 (181)
T ss_pred EEEEE
T ss_conf 99999
No 150
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=76.71 E-value=6.7 Score=20.18 Aligned_cols=86 Identities=28% Similarity=0.331 Sum_probs=55.0
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEEE---------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7789953998----99999999999789899998---------8979999999827998999950412969599999998
Q gi|254780476|r 3 KKVMIVEDNE----LNMKLFRDLIETSGYIALQT---------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK 69 (123)
Q Consensus 3 kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~a---------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir 69 (123)
||+|||-|.. -..+-+.+.|+..|.++... ++..++.+.++++.||.|+- +-+.+-.++++.+.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa---lGGGS~~D~AK~i~ 106 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA---LGGGSVIDAAKAIA 106 (377)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHHH
T ss_conf 715999798631106699999998744982899568899998889999999998169998999---77930878999999
Q ss_pred ---HCC------------CCCCCCEEEEEECCCHHHH
Q ss_conf ---285------------7689959999924998999
Q gi|254780476|r 70 ---EDS------------ELQEIPVIAVTAFAMKGDE 91 (123)
Q Consensus 70 ---~~~------------~~~~ipii~~t~~~~~~~~ 91 (123)
.++ .....|+|.+.+-...+.+
T Consensus 107 ~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSE 143 (377)
T COG1454 107 LLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSE 143 (377)
T ss_pred HHHHCCCHHHHHCCCCCCCCCCCCEEEECCCCCCHHH
T ss_conf 9960874066640556666789987982699863153
No 151
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.94 E-value=7 Score=20.05 Aligned_cols=98 Identities=12% Similarity=0.235 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 999999999978989-9998897999999982-79989999504129695999999982857689959999924998999
Q gi|254780476|r 14 NMKLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE 91 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~ 91 (123)
.+.-+.++|+..+.. +....+.++|..+++. ..=.+=++.+.|-.-++++..+.+++.. .++ +|..-+-...++.
T Consensus 4 ~~~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~--p~~-~vGaGTV~~~e~~ 80 (212)
T PRK05718 4 WKTQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEV--PEA-LIGAGTVLNPEQL 80 (212)
T ss_pred HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEEECCHHHH
T ss_conf 4636999997698799997489999999999999879978999578961999999999758--981-7965331348899
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 999976998899879898999999
Q gi|254780476|r 92 ERIRKGGCEAYISKPISLSIFMET 115 (123)
Q Consensus 92 ~~~~~~g~~~~l~KPi~~~~L~~~ 115 (123)
.++.++|++ |+.-|....++.+.
T Consensus 81 ~~a~~aGA~-FiVSP~~~~~v~~~ 103 (212)
T PRK05718 81 AQAIEAGAQ-FIVSPGLTPPLLKA 103 (212)
T ss_pred HHHHHCCCC-EEECCCCCHHHHHH
T ss_conf 999984998-99848998999999
No 152
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=75.83 E-value=7.1 Score=20.04 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 87789953998----9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.|+|-++.++. .....++..++..|.++.. ..+-...+..+++..||+|++-. ..-++..+++++++
T Consensus 135 ~~~vai~~~~~~~g~~~~~~~~~~l~~~g~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~--~~~~~~~~~~~~~~ 212 (334)
T cd06342 135 AKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGG--YYPEAGPLVRQMRQ 212 (334)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHH
T ss_conf 9689999156554455799999999974983999996588766657899999865999999926--75589999999997
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHH
Q ss_conf 85768995999992499899999997699889987989-------8999999999740
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS-------LSIFMETIKKYIG 121 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-------~~~L~~~i~~~l~ 121 (123)
..- +.|++..++...+......-+..-..|..-|.. .+.+.+..++..+
T Consensus 213 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g 268 (334)
T cd06342 213 LGL--KAPFMGGDGLCDPEFIKIAGDAAEGTYATFPGGPLEKMPAGKAFVARYKAKFG 268 (334)
T ss_pred CCC--CCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 699--97599967778789998645754581899404766689889999999999848
No 153
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=75.73 E-value=7.1 Score=20.02 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=57.0
Q ss_pred CEEEEECCCHHHHHHHHHH--H--HHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE----ECCCCCHH--------HHHH
Q ss_conf 7789953998999999999--9--97898999988979999999827998999950----41296959--------9999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDL--I--ETSGYIALQTRNGMEALELARQHKPDVIIMDI----QLQEISGL--------EITK 66 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~--l--~~~g~~v~~a~~g~eal~~l~~~~~dlillD~----~mp~~dG~--------el~~ 66 (123)
+|||.|--++...++-.+. | ...++.+....+-++.++.+...+|+++++|- ..|+.+|. |.+.
T Consensus 111 ~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca~ 190 (372)
T cd01121 111 GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTA 190 (372)
T ss_pred CCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 93899824567899998999858788772788435699999999971998899956220203776779987899999999
Q ss_pred HHHHCCCCCCCCEEEEE
Q ss_conf 99828576899599999
Q gi|254780476|r 67 QIKEDSELQEIPVIAVT 83 (123)
Q Consensus 67 ~ir~~~~~~~ipii~~t 83 (123)
.+-+-.+..++|++++-
T Consensus 191 ~L~~~AK~~~i~~~lVG 207 (372)
T cd01121 191 ELMRFAKERNIPIFIVG 207 (372)
T ss_pred HHHHHHHHCCCEEEEEE
T ss_conf 99999986197399998
No 154
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=75.46 E-value=7.2 Score=19.98 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=49.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEEEEE--CCCCCHH--HHHHHHHHCCCCCC
Q ss_conf 78995399899999999999789899998897---99999998279989999504--1296959--99999982857689
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQHKPDVIIMDIQ--LQEISGL--EITKQIKEDSELQE 76 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g---~eal~~l~~~~~dlillD~~--mp~~dG~--el~~~ir~~~~~~~ 76 (123)
|||+||.-...-..+.+.|...|..+....+- ...++.+ ...||.|++.=. -|...|. ++.+.+ . ...
T Consensus 2 rILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~-~~~~dgIILSpGPg~P~~~~~~~~~i~~~---~-~~~ 76 (221)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAV-AAGFDGVLLSPGPGTPERAGASIDMVRAC---A-AAG 76 (221)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-HCCCCEEEECCCCCCHHHCCCCHHHHHHH---H-CCC
T ss_conf 799993889339999999987799189998998998899876-34899899969999801167248899875---3-259
Q ss_pred CCEEEEE
Q ss_conf 9599999
Q gi|254780476|r 77 IPVIAVT 83 (123)
Q Consensus 77 ipii~~t 83 (123)
+||+.+-
T Consensus 77 iPILGIC 83 (221)
T PRK07765 77 TPLLGVC 83 (221)
T ss_pred CCEEEEE
T ss_conf 9889870
No 155
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=75.34 E-value=7.3 Score=19.96 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=58.3
Q ss_pred EEEECCCHHHHH----HHHHHHHHCCCEE---EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 899539989999----9999999789899---998897999999982799899995041296959999999828576899
Q gi|254780476|r 5 VMIVEDNELNMK----LFRDLIETSGYIA---LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 5 iLiVDD~~~~~~----~l~~~l~~~g~~v---~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
|||=|+.-.... .+++.=+..++.. .+++|-+|+.+.+... +|+|++|=.- --++-+.++.. ....-
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag-aDiImLDNm~----~e~~~~av~~l-~~~~~ 234 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG-ADIIMLDNMS----PEELKEAVKLL-GLAGR 234 (280)
T ss_pred EEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC-CCEEEECCCC----HHHHHHHHHHH-CCCCC
T ss_conf 776044788753599999999975899862899749999999999749-9999976999----99999999974-44776
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 5999992499899999997699889
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
.++-.||.-..+......+.|++-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 6999758978778999862699799
No 156
>PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed
Probab=75.32 E-value=4.4 Score=21.21 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 98778995399899999999999789899998
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQT 32 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a 32 (123)
||+||+++-.|+.=.+-++.+|+..|+++...
T Consensus 1 Mm~ki~~aT~N~~K~~E~~~il~~~~~~i~~~ 32 (197)
T PRK00120 1 MMKKLVLASHNAGKLRELAALLAPFGLEVVSQ 32 (197)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEH
T ss_conf 98639999298679999999887659889757
No 157
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=75.08 E-value=7.4 Score=19.92 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=61.8
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHHHHCC----CCEE------------EEEEECCCCCH-
Q ss_conf 953998999999999997898999988--------9799999998279----9899------------99504129695-
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQTR--------NGMEALELARQHK----PDVI------------IMDIQLQEISG- 61 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~a~--------~g~eal~~l~~~~----~dli------------llD~~mp~~dG- 61 (123)
+||..+...+.....++..|+.+.... ...+..+.+.... ++.- ......|-+.|
T Consensus 18 LvDSe~~~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv 97 (222)
T PRK10826 18 LIDSEPLWQRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPDRQEVVQRIIARVISLIEETRPLLPGV 97 (222)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 33489999999999999879899979999997198899999999986788898899999999999999986269818669
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY 119 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~ 119 (123)
.++++.+|+. .+|+-+.|++............|..+|+ .|| +|+-++.++++.
T Consensus 98 ~e~L~~l~~~----g~~l~i~Ts~~~~~~~~~L~~~gl~~~Fd~iv~~ddv~~~KP-~Pe~yl~A~~~l 161 (222)
T PRK10826 98 REALALCKAQ----GLKIGLASASPLHMLEAVLTMLDLRDYFDALASAEKLPYSKP-HPEVYLNCAAKL 161 (222)
T ss_pred HHHHHHHHHC----CCCEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 9999999977----997588628848999999987499641105763532567799-849999999995
No 158
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.94 E-value=7.5 Score=19.90 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=47.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 98778995399899999999999789899998897999999982799899995041
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~m 56 (123)
|.|.|||.--+.-.=..+...|...|+.|.......+.++.+..+....+.+|+.=
T Consensus 3 m~K~vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d 58 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGLEAFYLDYAE 58 (277)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCC
T ss_conf 98689992568699999999999879999999799999999984898199972667
No 159
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.66 E-value=7.6 Score=19.86 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=48.0
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 999988979999999827998999950412969599999998285768995999992499899999997699889
Q gi|254780476|r 28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 28 ~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
-..++.+-+|+.+.+... +|.|.+|- |.-.+=-+..+.+++.. .+.-..+-.||.-..+...+..+.|++.+
T Consensus 186 IeVEv~~lee~~~a~~~g-~d~I~LDn-~s~e~~~~~v~~l~~~~-~~~~v~ieaSGGI~~~ni~~ya~tGVD~I 257 (279)
T PRK08385 186 VEVEVESLEDALKAAKAG-ADIIMLDN-MTPEEIREVIEALKELG-LREKVKIEVSGGITPETIAEYAKLDVDVI 257 (279)
T ss_pred EEEEECCHHHHHHHHHCC-CCEEEECC-CCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 899709899999999769-99999849-99999999999987507-68978999978998999999985598999
No 160
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.21 E-value=7.8 Score=19.79 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=48.8
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 989999889799999998279989999504129-695999999982857689959999924998999999976998899
Q gi|254780476|r 26 GYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 26 g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
||.-.+..+..++++.+...--.+++.|+.--+ ++|++.+.+.. .+.|+++--+-...++..+..+.|+++.+
T Consensus 136 gw~~~~~~~~~~~~~~~~~~~~~ii~tdI~~dGt~~G~~~~~~~~-----~~~~iiasGGv~s~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 136 GWLEESSIKVEDAYKMLRNYVNRFIYTSIERDGTLTGIENIERFW-----GDEEFIYAGGVSSIEDVKKLAEIGFSGAI 209 (228)
T ss_pred CCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHC-----CCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 848889988999999998638453763126543003889999861-----68968987898999999999967998999
No 161
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950 This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=73.75 E-value=8 Score=19.73 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE-----------EECCCCHHHHHHHHHHH
Q ss_conf 9599999998285768995999992499899999997699889-----------98798989999999997
Q gi|254780476|r 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY-----------ISKPISLSIFMETIKKY 119 (123)
Q Consensus 60 dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~-----------l~KPi~~~~L~~~i~~~ 119 (123)
+-.+++.++|+.. ..+-++|......-.++...+|+.+| +.|| .|+.|..++++.
T Consensus 117 ~~~~~L~~LR~~G----y~Lg~iT~G~~~~Q~eKl~~lg~~~fFD~V~~s~e~g~~KP-hP~IF~~Al~~~ 182 (244)
T TIGR02253 117 DVVDTLMELRESG----YRLGLITDGLTVKQWEKLERLGIRDFFDAVITSEELGVEKP-HPKIFYAALRRL 182 (244)
T ss_pred CHHHHHHHHHHCC----CEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHHHH
T ss_conf 6889999998647----78899866877899999998277535770572244477697-858999999970
No 162
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=73.71 E-value=8 Score=19.72 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEE-------ECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 8999999999997898999-988979999999827998999950-------41296959999999828576899599999
Q gi|254780476|r 12 ELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDI-------QLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~-------~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
....++++.+-+..+..+. -+++-+||+...+.. +|+|=.-+ .-+....|++++++++.- .+|+|+=-
T Consensus 109 ~~l~~~i~~i~~~~~~l~MAD~st~ee~~~A~~~G-~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~---~~pvIaEG 184 (219)
T cd04729 109 ETLAELIKRIHEEYNCLLMADISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEG 184 (219)
T ss_pred CCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEEC
T ss_conf 78999999999986977887548899999999849-989970214567787889998789999999975---99399706
Q ss_pred ECCCHHHHHHHHHCCCCEEEEC
Q ss_conf 2499899999997699889987
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISK 105 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~K 105 (123)
....+....+++++|+...+.=
T Consensus 185 ri~tPe~a~~a~~~GA~aVVVG 206 (219)
T cd04729 185 RINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCCCHHHHHHHHHCCCCEEEEC
T ss_conf 9899999999998399899989
No 163
>PRK08017 short chain dehydrogenase; Provisional
Probab=73.40 E-value=8.2 Score=19.67 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=47.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 987789953998999999999997898999988979999999827998999950412
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp 57 (123)
|.|.|||.=-..-.=..+...|...|+.|..+....+.++.+.+..+..+.+|+.=+
T Consensus 1 M~K~vlITGassGIG~a~A~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~D~~~~ 57 (256)
T PRK08017 1 MQKSVLITGCSSGIGLESALELKRQGFRVLAGCRKPDDVARMNSMGFTGVLIDLDSP 57 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCH
T ss_conf 997899965876899999999998799999996998999999856994699835898
No 164
>PRK00811 spermidine synthase; Provisional
Probab=72.93 E-value=8.4 Score=19.61 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=47.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHH
Q ss_conf 7789953998999999999997898------999-9889799999998279989999504129695-----999999982
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGY------IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKE 70 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~------~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~ 70 (123)
++|-+||=|+...+.-+++|..+.. .+. ...+|...++. ..+.||+|++|..=|..-+ -++.+.+++
T Consensus 103 ~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~-~~~~yDvII~D~tDP~gpa~~Lft~~Fy~~~~~ 181 (283)
T PRK00811 103 EKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRE-TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKR 181 (283)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf 6799994689999999998388631330297159982789999984-523554899808998864455345999999998
Q ss_pred CCCCCCCCEEEE
Q ss_conf 857689959999
Q gi|254780476|r 71 DSELQEIPVIAV 82 (123)
Q Consensus 71 ~~~~~~ipii~~ 82 (123)
. ++.--|++.
T Consensus 182 ~--L~~~Gi~v~ 191 (283)
T PRK00811 182 A--LKEGGIFVA 191 (283)
T ss_pred H--CCCCCEEEE
T ss_conf 5--399958999
No 165
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=72.88 E-value=8 Score=19.73 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHHHCCCCEEEEEE-ECCCCCH----HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 99999827998999950-4129695----99999998285768995999992499899999997
Q gi|254780476|r 38 ALELARQHKPDVIIMDI-QLQEISG----LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 (123)
Q Consensus 38 al~~l~~~~~dlillD~-~mp~~dG----~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~ 96 (123)
|.+.+++..+|++|||= +-|-.=| =|+.+.|++.|...+ |++|+..-+.+....-+
T Consensus 106 a~~~~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~~kp~~~~---vvlTGR~aP~~L~~~AD 166 (191)
T TIGR00708 106 AKEVLADSEYDLVLLDELTVALKFGYLDVEEVVEVLQEKPKSQH---VVLTGRGAPQELVELAD 166 (191)
T ss_pred HHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCCE---EEEECCCCCHHHHHHCC
T ss_conf 99986498877640342345553489788999999855845677---88866878688997515
No 166
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.32 E-value=8.7 Score=19.53 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCC-EEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE------
Q ss_conf 79999999827998-9999504129-695--9999999828576899599999249989999999769988998------
Q gi|254780476|r 35 GMEALELARQHKPD-VIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS------ 104 (123)
Q Consensus 35 g~eal~~l~~~~~d-lillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~------ 104 (123)
..+.++.+.+..+. +++.|+.--+ +.| +++++++++. .++|+++--+-...++..+..+.|+++.+.
T Consensus 150 ~~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~i~~~---~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~~ 226 (240)
T PRK13585 150 PVEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRELVDS---VDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALYK 226 (240)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHC
T ss_conf 55777888863873589864233223257898999999986---899999988999999999999789978998768767
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 7989899999999
Q gi|254780476|r 105 KPISLSIFMETIK 117 (123)
Q Consensus 105 KPi~~~~L~~~i~ 117 (123)
.-++.++..+.++
T Consensus 227 g~i~l~e~~~~~~ 239 (240)
T PRK13585 227 GKFTLEEALEAAE 239 (240)
T ss_pred CCCCHHHHHHHHH
T ss_conf 9978999999964
No 167
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.84 E-value=8.9 Score=19.46 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=60.1
Q ss_pred HHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC--EEEEEECCCHHHH
Q ss_conf 9999999978989-9998897999999982-7998999950412969599999998285768995--9999924998999
Q gi|254780476|r 16 KLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP--VIAVTAFAMKGDE 91 (123)
Q Consensus 16 ~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip--ii~~t~~~~~~~~ 91 (123)
+-+-+.|+..+.. +....+.++|+..++. ..-.+=.+.+.|-.-+.++..+.+++.. ++-| +|..-+--..++.
T Consensus 4 ~~il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~--~~~p~~~iGaGTV~~~e~~ 81 (209)
T PRK06552 4 SEILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERY--KDDPEVLIGAGTVLDAVTA 81 (209)
T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH--CCCCCEEEEEECCCCHHHH
T ss_conf 99999999799799997289999999999999879988999678975999999999981--7799818988727489999
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99997699889987989899999999
Q gi|254780476|r 92 ERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 92 ~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
+++.++|++ |+.-|.-..++.+.-+
T Consensus 82 ~~a~~aGA~-FiVSP~~~~~v~~~a~ 106 (209)
T PRK06552 82 RQAILAGAQ-FIVSPSFNRETAKICN 106 (209)
T ss_pred HHHHHCCCC-EEECCCCCHHHHHHHH
T ss_conf 999985998-8976999899999999
No 168
>PRK07053 glutamine amidotransferase; Provisional
Probab=71.51 E-value=4.5 Score=21.18 Aligned_cols=81 Identities=11% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCCEEEEECCC-HHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCC-EEEEEEECCCCCH------HHHHHHHHHC
Q ss_conf 98778995399-8999999999997898999988979-999999827998-9999504129695------9999999828
Q gi|254780476|r 1 MLKKVMIVEDN-ELNMKLFRDLIETSGYIALQTRNGM-EALELARQHKPD-VIIMDIQLQEISG------LEITKQIKED 71 (123)
Q Consensus 1 m~kkiLiVDD~-~~~~~~l~~~l~~~g~~v~~a~~g~-eal~~l~~~~~d-lillD~~mp~~dG------~el~~~ir~~ 71 (123)
|||||||+--. ...--.+...|+..|+.+....-.. +.+ --.-..+| +|++.-.|.--+- -+..+-||+.
T Consensus 1 mmk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~-p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a 79 (235)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLE-VLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQR 79 (235)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99539999689988986999999978995999967889889-99966679999938998988776685589999999999
Q ss_pred CCCCCCCEEEEE
Q ss_conf 576899599999
Q gi|254780476|r 72 SELQEIPVIAVT 83 (123)
Q Consensus 72 ~~~~~ipii~~t 83 (123)
-...+|++.+-
T Consensus 80 -~~~~~PvLGIC 90 (235)
T PRK07053 80 -LAAGLPTLGIC 90 (235)
T ss_pred -HHCCCCEEEEC
T ss_conf -98699889984
No 169
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=71.10 E-value=9.3 Score=19.36 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=63.9
Q ss_pred CCEEE-EECCCHH---HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 87789-9539989---9999999999789899998-------89799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVM-IVEDNEL---NMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiL-iVDD~~~---~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.|||- +.+|++. ..+.++..++..|.++... .+-...+..+++..||+|++- ....++..++++.++
T Consensus 136 ~~~vaiv~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~i~~i~~~~~d~v~~~--~~~~~~~~~~~~~~~ 213 (299)
T cd04509 136 WKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLC--GSGEDAATILKQAAE 213 (299)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHH
T ss_conf 977999557740679999999999998799799998469999899999999996699999990--771899999999997
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8576899599999249989999999769988998798
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
..-....|++..++...........+..-..+..-|.
T Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~ 250 (299)
T cd04509 214 AGLTGGYPILGITLGLSDVLLEAGGEAAEGVLTGTPY 250 (299)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 5998897399956767889999788872876999735
No 170
>PRK11823 DNA repair protein RadA; Provisional
Probab=70.52 E-value=9.6 Score=19.29 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=58.3
Q ss_pred CEEEEECCCHHHHHHHHHH--H--HHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE----ECCCCCHH--------HHHH
Q ss_conf 7789953998999999999--9--97898999988979999999827998999950----41296959--------9999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDL--I--ETSGYIALQTRNGMEALELARQHKPDVIIMDI----QLQEISGL--------EITK 66 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~--l--~~~g~~v~~a~~g~eal~~l~~~~~dlillD~----~mp~~dG~--------el~~ 66 (123)
+++|.|--++...++-.+. | ...++.+....+-+..++.+.+.+|+++++|- ..|+.+|. +.+.
T Consensus 118 ~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~ 197 (454)
T PRK11823 118 GKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAA 197 (454)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHH
T ss_conf 95799815015789999999758888873788536899999999860998899943111541566778997899999999
Q ss_pred HHHHCCCCCCCCEEEEE
Q ss_conf 99828576899599999
Q gi|254780476|r 67 QIKEDSELQEIPVIAVT 83 (123)
Q Consensus 67 ~ir~~~~~~~ipii~~t 83 (123)
.+-+-.+.+++|++++-
T Consensus 198 ~L~~~AK~~~i~~~lVG 214 (454)
T PRK11823 198 ELTRLAKQSGIAVFLVG 214 (454)
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 99999974498289999
No 171
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=70.23 E-value=9.7 Score=19.25 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=63.7
Q ss_pred HHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999--99999789899998897--99999998279989999504129695-----99999998285768995999992
Q gi|254780476|r 14 NMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 14 ~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~ 84 (123)
..+.+ .+.|-..||.|....+. .-|.++..- =-..++=+.-|-.+| .+.++.|++.. ++|||+=-+
T Consensus 109 ~~eTl~Aae~Lv~~GF~VlpY~~~D~v~akrLe~~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIVDAG 183 (248)
T cd04728 109 PIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA--GCAAVMPLGSPIGSGQGLLNPYNLRIIIERA---DVPVIVDAG 183 (248)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC
T ss_conf 68999999999988998978678899999999974--9534520456434798879999999999847---998898479
Q ss_pred CCCHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf 499899999997699889987-----989899999999974
Q gi|254780476|r 85 FAMKGDEERIRKGGCEAYISK-----PISLSIFMETIKKYI 120 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l 120 (123)
-..+.+..+++++|+++.|.- --++-.+-+.++.++
T Consensus 184 iG~pS~Aa~aMElG~daVL~NTAIA~A~dPv~MA~A~~~AV 224 (248)
T cd04728 184 IGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred CCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99756789998726553345468771699899999999999
No 172
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=70.19 E-value=9.7 Score=19.24 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHC-CCCEEEEEEECCCCCH--HHHHHHHHHCCCCC
Q ss_conf 877899539989999999999978989--99-988979999999827-9989999504129695--99999998285768
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYI--AL-QTRNGMEALELARQH-KPDVIIMDIQLQEISG--LEITKQIKEDSELQ 75 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~--v~-~a~~g~eal~~l~~~-~~dlillD~~mp~~dG--~el~~~ir~~~~~~ 75 (123)
+++++.||-|.....++++.++..+++ +. ...+...++..+... +||+|++|=-...--. ...+..+.+..-++
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~ 145 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLK 145 (187)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 85699996598999999999998487612599840089998722778851289968997536066899998887658778
Q ss_pred CCCEEEEE
Q ss_conf 99599999
Q gi|254780476|r 76 EIPVIAVT 83 (123)
Q Consensus 76 ~ipii~~t 83 (123)
.-.+|++-
T Consensus 146 ~~~~iv~E 153 (187)
T COG0742 146 PGALIVVE 153 (187)
T ss_pred CCCEEEEE
T ss_conf 89689998
No 173
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=69.83 E-value=6.4 Score=20.29 Aligned_cols=42 Identities=31% Similarity=0.498 Sum_probs=27.5
Q ss_pred HHCCCCEEEEEEE--C--CCCCH--------HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 8279989999504--1--29695--------99999998285768995999992
Q gi|254780476|r 43 RQHKPDVIIMDIQ--L--QEISG--------LEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 43 ~~~~~dlillD~~--m--p~~dG--------~el~~~ir~~~~~~~ipii~~t~ 84 (123)
.++.+|+|++|+- | |+.++ -++++.+|....-.++|||.++-
T Consensus 126 ~~~~~~~vvvDyl~l~~~~~~~~~~~r~~~v~~i~~~Lk~lA~e~~i~ii~~sQ 179 (186)
T pfam03796 126 REHGLGLIVIDYLQLMQGSKASKSENRQQEISEISRSLKALAKELNIPVIALSQ 179 (186)
T ss_pred HHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 855998899748986367788877559999999999999999997991899722
No 174
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=69.73 E-value=10 Score=19.19 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=58.0
Q ss_pred CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHH
Q ss_conf 8778995399---8999999999997898999988979-------999999827998999950412969--599999998
Q gi|254780476|r 2 LKKVMIVEDN---ELNMKLFRDLIETSGYIALQTRNGM-------EALELARQHKPDVIIMDIQLQEIS--GLEITKQIK 69 (123)
Q Consensus 2 ~kkiLiVDD~---~~~~~~l~~~l~~~g~~v~~a~~g~-------eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir 69 (123)
.+||.+|--| .-..+.++.+-+..|..+..+.++. ++++..+.+.+|+|++|.- +.+ --+..++++
T Consensus 29 ~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D~IlIDTa--Gr~~~d~~~~~el~ 106 (196)
T pfam00448 29 GKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYDVVLVDTA--GRLQNDKNLMDELK 106 (196)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHH
T ss_conf 9928999758776889999999998639817814877787899999999988468999999899--98747677899999
Q ss_pred ---HCCCCCCCCEEEEEECCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf ---28576899599999249989999999----7699889-987
Q gi|254780476|r 70 ---EDSELQEIPVIAVTAFAMKGDEERIR----KGGCEAY-ISK 105 (123)
Q Consensus 70 ---~~~~~~~ipii~~t~~~~~~~~~~~~----~~g~~~~-l~K 105 (123)
.... ..-.++++++....++..++. ..+.++. ++|
T Consensus 107 ~~~~~~~-~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TK 149 (196)
T pfam00448 107 KIKRVIA-PDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTK 149 (196)
T ss_pred HHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9985228-730289985677821378999876004776268884
No 175
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=69.69 E-value=9.9 Score=19.21 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHCCCCEEEE-----EEECCCCCHHHHH-HHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 99998279989999-----5041296959999-999828576899599999249989999
Q gi|254780476|r 39 LELARQHKPDVIIM-----DIQLQEISGLEIT-KQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 39 l~~l~~~~~dlill-----D~~mp~~dG~el~-~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
++.++++++|++++ |-.-|-....+++ +-+.+... ..+|+|+++|......+.
T Consensus 32 ~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~~fl~~l~~-~~~~vvvIaGNHDS~~rL 90 (402)
T PRK10966 32 LEQAQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNHDSVATL 90 (402)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHH
T ss_conf 99999849999998875579999999999999999999996-699689994798987776
No 176
>PRK10128 putative aldolase; Provisional
Probab=69.26 E-value=10 Score=19.13 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHHHH
Q ss_conf 7999999982799899995041296959999999828576899599999249989999999769988998798-989999
Q gi|254780476|r 35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFM 113 (123)
Q Consensus 35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~ 113 (123)
.....+.+..--+|.+++|.+=--.+=-++...++........|++=+ ....+....++++.|+.+.+.-=+ +.++..
T Consensus 11 sp~~aEi~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~~~~piVRv-~~~~~~~i~r~LD~Ga~GiivP~V~tae~A~ 89 (250)
T PRK10128 11 TSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRP-VEGSKALIKQVLDIGAQTLLIPMVDTAEQAR 89 (250)
T ss_pred CHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHCCCCEEEECCCCCHHHHH
T ss_conf 979999998089899998177899999999999999986599719985-8999889999983789877854748699999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780476|r 114 ETIK 117 (123)
Q Consensus 114 ~~i~ 117 (123)
+.++
T Consensus 90 ~~V~ 93 (250)
T PRK10128 90 QVVS 93 (250)
T ss_pred HHHH
T ss_conf 9999
No 177
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=68.98 E-value=10 Score=19.09 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=67.9
Q ss_pred CCEEEEECCC----HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8778995399----899999999999789899998-------89799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIVEDN----ELNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~----~~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.|||.++-+| ....+.++..++..|+++... .+-...+..++...||+|++-.. .-+...++++.++
T Consensus 134 ~~~vaiv~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~i~~~~~~~pd~v~~~~~--~~~~~~~~~q~~~ 211 (336)
T cd06360 134 YKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFA--GGDAIKFVKQYDA 211 (336)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHH
T ss_conf 98699946874466999999999999739969999965899856799999998769899999356--6048999999997
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHH
Q ss_conf 85768995999992499899999997699889987989-------8999999999740
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS-------LSIFMETIKKYIG 121 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-------~~~L~~~i~~~l~ 121 (123)
..-..++|++.-............-+....-+..-|+. ..++.+..++..|
T Consensus 212 ~G~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g 269 (336)
T cd06360 212 AGLKAKIPLIGSGFLTDGTTLGAAGEAAEGVITALHYADTLDNPANQAFVKAYRAAYP 269 (336)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 3998780699865447888887657631676984003775688256999999999858
No 178
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=68.73 E-value=10 Score=19.06 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=61.7
Q ss_pred CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 7789-953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVM-IVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiL-iVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
|||- +-+|+. ...+.+++.++..|.++... .+-...+..++...||+|++- ....++..+++++|+.
T Consensus 139 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~V~~~--~~~~~~~~~~~q~~~~ 216 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIV--GNGPEGAQIANGMAKL 216 (347)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC
T ss_conf 66999970763668999999999986598675788407998348999999986699999994--7761799999999971
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCC
Q ss_conf 576899599999249989999999769
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGG 98 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g 98 (123)
. -+.|++...+.........+-...
T Consensus 217 G--~~~~~~g~~~~~~~~~~~~~g~~a 241 (347)
T cd06335 217 G--WKVPIISHWGLSGGNFIEGAGPAA 241 (347)
T ss_pred C--CCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 9--997679414777589998656641
No 179
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.70 E-value=10 Score=19.06 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=61.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 7789953998999999999997898999988-979999999827998999950412969599999998285768995999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTR-NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~-~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
..++++|.|+...+.. +..|+.+.-.+ +-.+.++.+.-++-..+++-+.-|. +-..+.+.+|+.. .++||++
T Consensus 441 ~~~vvid~d~~~v~~~----~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit~~d~~-~~~~iv~~~r~~~--p~~~Iia 513 (558)
T PRK10669 441 IPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY-EAGEIVASAREKN--PDIEIIA 513 (558)
T ss_pred CCEEEEECCHHHHHHH----HHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH-HHHHHHHHHHHHC--CCCEEEE
T ss_conf 9889998989999999----9689979997899889998579132499999819889-9999999999878--6986999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf 9924998999999976998899879
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKP 106 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KP 106 (123)
-+ ...++.++..+.|++..+.-.
T Consensus 514 Ra--~~~~~~~~L~~aGA~~VV~~~ 536 (558)
T PRK10669 514 RA--HYDDEVAYITERGANQVVMGE 536 (558)
T ss_pred EE--CCHHHHHHHHHCCCCEEECCH
T ss_conf 97--989999999977999898937
No 180
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=68.49 E-value=11 Score=19.03 Aligned_cols=69 Identities=13% Similarity=0.308 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 899999999999789899998---89799999998279989999504129-69599999998285768995999
Q gi|254780476|r 12 ELNMKLFRDLIETSGYIALQT---RNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii~ 81 (123)
..-...+...|+..||++... ...++-.+.+.+++||+|-+...+-. ...++.+..+++.... ++|+++
T Consensus 13 ~~g~~~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgiS~~~~~~~~~~~~~~~~~~~~~~-~v~vv~ 85 (125)
T cd02065 13 DIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGI-DIPVVV 85 (125)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf 7889999999997899899899988999999999860899999852113018999999999996799-875997
No 181
>PRK08904 consensus
Probab=68.48 E-value=11 Score=19.03 Aligned_cols=93 Identities=12% Similarity=0.268 Sum_probs=50.2
Q ss_pred HHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 9999978989-9998897999999982-7998999950412969599999998285768995999992499899999997
Q gi|254780476|r 19 RDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 (123)
Q Consensus 19 ~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~ 96 (123)
+++|...+.. +....+.++|+.+++. ..=.+=++.+.|-.-+.++..+.+++.. .++ +|..-+-...+...++.+
T Consensus 4 ~~~L~~~~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~a~~~i~~l~~~~--p~~-~vGaGTVl~~e~~~~a~~ 80 (207)
T PRK08904 4 REILTAGAVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLRTPVGLDAIRLIAKEV--PNA-IVGAGTVTNPEQLKAVED 80 (207)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHHH
T ss_conf 99998699799997699999999999999879988999579913999999999868--987-685531368999999998
Q ss_pred CCCCEEEECCCCHHHHHHH
Q ss_conf 6998899879898999999
Q gi|254780476|r 97 GGCEAYISKPISLSIFMET 115 (123)
Q Consensus 97 ~g~~~~l~KPi~~~~L~~~ 115 (123)
+|++ |+.-|.--.++.+.
T Consensus 81 aGA~-FiVSP~~~~~v~~~ 98 (207)
T PRK08904 81 AGAV-FAISPGLHESLAKA 98 (207)
T ss_pred CCCC-EEECCCCCHHHHHH
T ss_conf 4999-99848998999999
No 182
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=68.45 E-value=11 Score=19.03 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=64.8
Q ss_pred HHHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 999999--99999789899998897--99999998279989999504129695-----9999999828576899599999
Q gi|254780476|r 13 LNMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 13 ~~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t 83 (123)
...+.+ .+.|-..||.|....+. .-|.++..- =-..++=+.-|-.+| ...++.|++. .++|||+=-
T Consensus 122 D~~etl~Aae~Lv~eGF~VlpY~~dD~v~akrLe~~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vPvIVDA 196 (267)
T CHL00162 122 DPIGTLKAAEFLVRKGFTVLPYINADPVLAKQLEDI--GCATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDA 196 (267)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEC
T ss_conf 878999999999978999989548998999999865--986886345512368875899999999964---899889968
Q ss_pred ECCCHHHHHHHHHCCCCEEEECC-----CCHHHHHHHHHHHH
Q ss_conf 24998999999976998899879-----89899999999974
Q gi|254780476|r 84 AFAMKGDEERIRKGGCEAYISKP-----ISLSIFMETIKKYI 120 (123)
Q Consensus 84 ~~~~~~~~~~~~~~g~~~~l~KP-----i~~~~L~~~i~~~l 120 (123)
+-..+.+..+++++|+++.|.-- -+|-.+-++++.++
T Consensus 197 GiG~pSdAa~aMElG~DaVL~NTAIA~A~dPv~MA~A~k~AV 238 (267)
T CHL00162 197 GIGTPSEASQAMELGASGVLLNTAVAKAKNPEQMAKAMKLAV 238 (267)
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
T ss_conf 989678889999746777870167671699899999999999
No 183
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=68.17 E-value=11 Score=18.99 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=57.9
Q ss_pred CEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-------HHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 778995399---8999999999997898999988979999999-------827998999950412969599999998285
Q gi|254780476|r 3 KKVMIVEDN---ELNMKLFRDLIETSGYIALQTRNGMEALELA-------RQHKPDVIIMDIQLQEISGLEITKQIKEDS 72 (123)
Q Consensus 3 kkiLiVDD~---~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l-------~~~~~dlillD~~mp~~dG~el~~~ir~~~ 72 (123)
+||.+|--| .-..+.++.+-+..|..+..+.++.+..+.+ +.+.+|+|++|.-=-.-.--++.++++...
T Consensus 29 ~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~l~ 108 (173)
T cd03115 29 KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIK 108 (173)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 92899974887577999999999974985992277558799999999998756899899978887879999999999998
Q ss_pred CC-C-CCCEEEEEECCCHHHHHH--HH--HCCCCEE-EEC
Q ss_conf 76-8-995999992499899999--99--7699889-987
Q gi|254780476|r 73 EL-Q-EIPVIAVTAFAMKGDEER--IR--KGGCEAY-ISK 105 (123)
Q Consensus 73 ~~-~-~ipii~~t~~~~~~~~~~--~~--~~g~~~~-l~K 105 (123)
.. + .-.++++++....+..++ .+ ..|++++ ++|
T Consensus 109 ~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TK 148 (173)
T cd03115 109 RVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTK 148 (173)
T ss_pred HHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6448972157424655065899999987427997899971
No 184
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=68.14 E-value=11 Score=18.99 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=53.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CE----EEEECCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHHHHHHH
Q ss_conf 8778995399899999999999789--89----99988979999999827998999950412969-----5999999982
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSG--YI----ALQTRNGMEALELARQHKPDVIIMDIQLQEIS-----GLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~~----v~~a~~g~eal~~l~~~~~dlillD~~mp~~d-----G~el~~~ir~ 70 (123)
..|+-+||=|+...+.-+++|..+. .. -....+|.+-++...+ .||+|++|..=|..- -.++.+.+++
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~ 178 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVDSTDPVGPAEALFTEEFYEGCRR 178 (282)
T ss_pred CCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4337999708899999998666754335797368996107999874887-677899858899884302377999999998
Q ss_pred CCCCCCCCEEEE
Q ss_conf 857689959999
Q gi|254780476|r 71 DSELQEIPVIAV 82 (123)
Q Consensus 71 ~~~~~~ipii~~ 82 (123)
.- +.--|++.
T Consensus 179 ~L--~~~Gi~v~ 188 (282)
T COG0421 179 AL--KEDGIFVA 188 (282)
T ss_pred HC--CCCCEEEE
T ss_conf 62--88968999
No 185
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=67.83 E-value=8.2 Score=19.66 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=35.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC----EEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 7789953998999999999997898999988979999999827998----999950412969599999998285768995
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD----VIIMDIQLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~d----lillD~~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
+||+|||| .+.+-.+-.+|.+.+++.... ++++|.+-+... | +...++-.+..++|
T Consensus 118 ~kvvvveD-----------------V~TtG~s~~~A~~~i~~ag~~V~~v~~~vDR~e~~~~--E-~~A~~~f~~~y~~~ 177 (187)
T TIGR00336 118 DKVVVVED-----------------VITTGGSILEAVEAIQEAGGEVAGVIVIVDRQERGKG--E-LSAGQEFEKEYGLP 177 (187)
T ss_pred CEEEEEEC-----------------CCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCC--C-CCHHHHHHHHHCCE
T ss_conf 63899951-----------------4342479999999998618889999999826724331--0-13345546552864
Q ss_pred EEEEEE
Q ss_conf 999992
Q gi|254780476|r 79 VIAVTA 84 (123)
Q Consensus 79 ii~~t~ 84 (123)
++-+..
T Consensus 178 ~~sl~~ 183 (187)
T TIGR00336 178 LISLIT 183 (187)
T ss_pred EEEEEE
T ss_conf 432313
No 186
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=67.60 E-value=11 Score=18.93 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHH
Q ss_conf 897999999982799899995041296959999999828576899599999249989999999769988998798-9899
Q gi|254780476|r 33 RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSI 111 (123)
Q Consensus 33 ~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~ 111 (123)
.......+.+...-||.+++|.+=-..|--++...++........|++= .....+....++++.|+++.+.-=+ +.++
T Consensus 20 ~~sp~~~Ei~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~iVR-vp~~~~~~i~~~LD~Ga~GiivP~V~t~ee 98 (249)
T TIGR03239 20 LGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVR-PPWNEPVIIKRLLDIGFYNFLIPFVESAEE 98 (249)
T ss_pred CCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE-CCCCCHHHHHHHHCCCCCEEEECCCCCHHH
T ss_conf 8998999999718969999810448999999999999998469984897-999987899999708998789517455999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780476|r 112 FMETIK 117 (123)
Q Consensus 112 L~~~i~ 117 (123)
..+.++
T Consensus 99 a~~~v~ 104 (249)
T TIGR03239 99 AERAVA 104 (249)
T ss_pred HHHHHH
T ss_conf 999999
No 187
>PRK08782 consensus
Probab=66.95 E-value=11 Score=18.85 Aligned_cols=99 Identities=12% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 99999999978989-9998897999999982-799899995041296959999999828576899599999249989999
Q gi|254780476|r 15 MKLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 15 ~~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
..-..++|+..|.. |....+.++|..+++. ..=.+=++.+.|-.-++++..+.+++.. .++ ++...+--..+...
T Consensus 7 ~~~~~~~L~~~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt~~a~~~i~~l~~~~--p~~-~vGaGTV~~~e~~~ 83 (219)
T PRK08782 7 QNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIEALAMLKREL--PNI-VIGAGTVLSERQLR 83 (219)
T ss_pred HCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEEECCHHHHH
T ss_conf 255999998789789997599999999999999879987999679933999999999868--994-79999705899999
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 9997699889987989899999999
Q gi|254780476|r 93 RIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 93 ~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
++.++|++ |+.-|....++.+.-+
T Consensus 84 ~a~~aGA~-FiVSP~~~~~v~~~a~ 107 (219)
T PRK08782 84 QSVDAGAD-FLVTPGTPAPLARLLA 107 (219)
T ss_pred HHHHCCCC-EEECCCCCHHHHHHHH
T ss_conf 99984998-9987899799999999
No 188
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=66.73 E-value=12 Score=18.82 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC----CCHHHHHHHHHHCCCCCCC-CEEEEEE
Q ss_conf 98999999999997-8989999889799999998279989999504129----6959999999828576899-5999992
Q gi|254780476|r 11 NELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQE----ISGLEITKQIKEDSELQEI-PVIAVTA 84 (123)
Q Consensus 11 ~~~~~~~l~~~l~~-~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~----~dG~el~~~ir~~~~~~~i-pii~~t~ 84 (123)
|....+.+...|.. .||++.. +.++| |+||++..==. --.+.-+.+++.......- -+|+++|
T Consensus 12 N~~Dse~m~~~L~~~~G~~~~~--~~~~A---------Dv~i~NTC~vr~~ae~k~~~~l~~~~~~k~~~~~d~~i~V~G 80 (455)
T TIGR00089 12 NEADSEIMAGLLKEAAGYEVTD--DPEEA---------DVIIINTCAVREKAEQKVRSELGELAKLKKKNPDDAKIVVAG 80 (455)
T ss_pred CHHHHHHHHHHHHHHCCEEECC--CCCCC---------CEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 5788999999888744714338--86644---------579985345651578999999999998277788885899846
Q ss_pred CCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 499899999-9976998899879898999999999740
Q gi|254780476|r 85 FAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 85 ~~~~~~~~~-~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
--...+..+ ..+....+++.-|-+.+.+.+.|+++..
T Consensus 81 C~aq~~~~~l~~~~p~~d~~~G~~~~~~~~~~i~~~~~ 118 (455)
T TIGR00089 81 CLAQREGEELLKRIPEVDIVLGTQDVERIPELINSAEE 118 (455)
T ss_pred CCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 44323878999645856999843137889999999863
No 189
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.54 E-value=12 Score=18.80 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCCEEEEEC----CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCC
Q ss_conf 987789953----998999999999997898999988979999999827998999950412969-599999998285768
Q gi|254780476|r 1 MLKKVMIVE----DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQ 75 (123)
Q Consensus 1 m~kkiLiVD----D~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~ 75 (123)
|++|+-++- =|....+.+...|...||. ..+.+.++ -|++++...==-.+ --+..+.|++....+
T Consensus 1 ~~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~-~~~~~~~e---------ADvviiNTC~V~~~a~~k~~~~i~~~~~~~ 70 (437)
T COG0621 1 MMKKVYIETLGCQMNLYDSERMAGLLEAAGYE-ELVEDPEE---------ADVVIINTCAVREKAEQKVRSAIGELKKLK 70 (437)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCC---------CCEEEEECCEEEEHHHHHHHHHHHHHHHHC
T ss_conf 98459999668884277899999999876885-34698556---------888999667655359999999999999729
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9959999924998999999976998899879898999999999740
Q gi|254780476|r 76 EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 76 ~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
.--+|++||.......+.....--.+.+.=|-+.+.+.+.|.+++.
T Consensus 71 p~~~iiVtGC~aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~ 116 (437)
T COG0621 71 PDAKIIVTGCLAQAEEEILERAPEVDIVLGPQNKERLPEAIEKALR 116 (437)
T ss_pred CCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9978999687123578889508886099787347778999999861
No 190
>KOG1601 consensus
Probab=66.43 E-value=1 Score=24.92 Aligned_cols=104 Identities=12% Similarity=0.160 Sum_probs=62.8
Q ss_pred EEECCCHHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9953998999999999997898----999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGY----IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~----~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
+.+||+...+.++..++...-+ ......+..+.........+|+++-++.||++.|+++..++........+|+.+
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (340)
T KOG1601 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPS 98 (340)
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 45664446600011454346665555553457655443322355567667653335553213455214664546788654
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 9924998999999976998899879898
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPISL 109 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~ 109 (123)
.+..............++..|+.||...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 126 (340)
T KOG1601 99 MPSSNSSSSSSSSVSPSASLELTKPDRK 126 (340)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5544545544455466411245555553
No 191
>KOG4175 consensus
Probab=66.12 E-value=12 Score=18.75 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCEEEEEEECC--CCCHHHH-----------------HHHHHH-CCCCCCCCEEEEEECC------CHH
Q ss_conf 9999999827998999950412--9695999-----------------999982-8576899599999249------989
Q gi|254780476|r 36 MEALELARQHKPDVIIMDIQLQ--EISGLEI-----------------TKQIKE-DSELQEIPVIAVTAFA------MKG 89 (123)
Q Consensus 36 ~eal~~l~~~~~dlillD~~mp--~~dG~el-----------------~~~ir~-~~~~~~ipii~~t~~~------~~~ 89 (123)
..+++-++..-.|+|=+.+-.. -.||-.. ...+++ .++--.+||++++.+. .+.
T Consensus 35 ~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~ 114 (268)
T KOG4175 35 AKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN 114 (268)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 99998875279674886685676456773455667899872896899999999850468630266220144887640789
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 999999769988998798989999999997
Q gi|254780476|r 90 DEERIRKGGCEAYISKPISLSIFMETIKKY 119 (123)
Q Consensus 90 ~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~ 119 (123)
....+.++|+++|+.-.+.+++- ..++..
T Consensus 115 ~iq~ak~aGanGfiivDlPpEEa-~~~Rne 143 (268)
T KOG4175 115 YIQVAKNAGANGFIIVDLPPEEA-ETLRNE 143 (268)
T ss_pred HHHHHHHCCCCCEEECCCCHHHH-HHHHHH
T ss_conf 99999965877458506886898-999999
No 192
>PRK05595 replicative DNA helicase; Provisional
Probab=66.11 E-value=9.1 Score=19.42 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHCCCEEEEEC--CHHH----HHHHHHHCCCCEEEEEEE--CCCC-CH-------HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99997898999988--9799----999998279989999504--1296-95-------9999999828576899599999
Q gi|254780476|r 20 DLIETSGYIALQTR--NGME----ALELARQHKPDVIIMDIQ--LQEI-SG-------LEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 20 ~~l~~~g~~v~~a~--~g~e----al~~l~~~~~dlillD~~--mp~~-dG-------~el~~~ir~~~~~~~ipii~~t 83 (123)
..+..+.+.+.... +-.+ +..+-+++.+|+|++|+- |+.. .+ -++.+.+|....--++|||++|
T Consensus 279 ~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~ls 358 (444)
T PRK05595 279 GPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGKSSESRQQEVSEISRSIKALAKEMECPVIALS 358 (444)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99854897054899964899999999999873999899823763578988888999999999999999999699799970
Q ss_pred EC
Q ss_conf 24
Q gi|254780476|r 84 AF 85 (123)
Q Consensus 84 ~~ 85 (123)
=-
T Consensus 359 QL 360 (444)
T PRK05595 359 QL 360 (444)
T ss_pred CC
T ss_conf 26
No 193
>PRK13055 putative lipid kinase; Reviewed
Probab=65.83 E-value=12 Score=18.72 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=46.5
Q ss_pred CCCEEEEECC----C---HHHHHHHHHHHHHCCCEEEEE---CCHHHHHH---HHHHCCCCEEEEEEECCCCCHH--HHH
Q ss_conf 9877899539----9---899999999999789899998---89799999---9982799899995041296959--999
Q gi|254780476|r 1 MLKKVMIVED----N---ELNMKLFRDLIETSGYIALQT---RNGMEALE---LARQHKPDVIIMDIQLQEISGL--EIT 65 (123)
Q Consensus 1 m~kkiLiVDD----~---~~~~~~l~~~l~~~g~~v~~a---~~g~eal~---~l~~~~~dlillD~~mp~~dG~--el~ 65 (123)
||||+++|=+ + ......+...|+..|+++... ..+.+|.+ .+....+|+|+.= +-||- |++
T Consensus 1 MmKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~~tt~~~~~a~~~a~~a~~~g~d~Iva~----GGDGTinevv 76 (334)
T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEARRAAKAGFDLIIAA----GGDGTINEVV 76 (334)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE----CCCCHHHHHH
T ss_conf 970699999987789757889999999999869859999944178579999998765799899998----7760899999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 99982857689959999924998999999
Q gi|254780476|r 66 KQIKEDSELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 66 ~~ir~~~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
..+.... .-|.+.+-....-.+..+.
T Consensus 77 ngl~~~~---~~~~LgiIP~GTgNDfAr~ 102 (334)
T PRK13055 77 NGIAPLE---KRPKMAIIPAGTTNDYARA 102 (334)
T ss_pred HHHHCCC---CCCEEEEEECCCCHHHHHH
T ss_conf 9873469---9971899807770789998
No 194
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=64.57 E-value=13 Score=18.58 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 99999999999789899998897999999982799899995041296959999999828576899599999249989999
Q gi|254780476|r 13 LNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 13 ~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
...+.+...+-.|||.+..-++..-.+..+...- |......+|+.+ ....|.+++......
T Consensus 48 ~vi~~l~~nfv~wgwDvt~~sN~~~fl~~~~~~~--------------gs~as~t~r~~~-~d~~P~l~iV~~~rs---- 108 (136)
T cd02990 48 SIVQYLSQNFITWGWDMTKESNKARFLSSCTRHF--------------GSVAAQTIRNIK-TDQLPAILIIMGKRS---- 108 (136)
T ss_pred HHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHH--------------CHHHHHHHHHCC-CCCCCEEEEEEECCC----
T ss_conf 9999998365583201576567899999998750--------------648999998365-244886765664465----
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99976998899879898999999999740
Q gi|254780476|r 93 RIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 93 ~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
...+-+.+.-++.+++|+..+.+++.
T Consensus 109 ---~~evl~vi~Gn~~~dELl~~L~~~~E 134 (136)
T cd02990 109 ---SNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred ---CCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf ---42342335379999999999999876
No 195
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=64.10 E-value=13 Score=18.53 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHCCCC-EEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 979999999827998-99995041296-95--9999999828576899599999249989999999769988998
Q gi|254780476|r 34 NGMEALELARQHKPD-VIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 34 ~g~eal~~l~~~~~d-lillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
+..+.++.+.+..+. +++.|+.--++ .| +++++++++. .++|+++--+-....+..+..+.|+++.+.
T Consensus 147 ~~~~~i~~~~~~g~geiilt~i~~dGt~~G~d~~ll~~i~~~---~~~p~i~~GGv~s~~di~~l~~~g~~gviv 218 (234)
T cd04732 147 SLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 169999999745864699876425665356899999999865---799899981899999999999779989999
No 196
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=64.06 E-value=13 Score=18.52 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=59.6
Q ss_pred HHCCCEEEEECCHH--------HHH-HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 97898999988979--------999-999827998999950412969599999998285768995999992499899999
Q gi|254780476|r 23 ETSGYIALQTRNGM--------EAL-ELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 (123)
Q Consensus 23 ~~~g~~v~~a~~g~--------eal-~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~ 93 (123)
...+..+..+.+|. ++. +++.+..||+++.=.-=|..-|-.-+|.+-+. ..+|.|++|........+.
T Consensus 27 dRedI~vrv~gsGaKm~pe~~e~~~~~~l~~~~pDf~i~isPN~a~PGP~~ARE~l~~---~giP~IvI~D~p~~K~kd~ 103 (276)
T pfam01993 27 DREDIEVRVVGSGAKMDPECVEEVVLDMLEEFEPDFVIYISPNPAAPGPKKAREMLSD---SGYPAVIIGDAPGLKVKDE 103 (276)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHH
T ss_conf 3468649995266667988899999999986189989997899889995679999975---6998799837863325899
Q ss_pred HHHCCCCEEEECC
Q ss_conf 9976998899879
Q gi|254780476|r 94 IRKGGCEAYISKP 106 (123)
Q Consensus 94 ~~~~g~~~~l~KP 106 (123)
..+.|+-.++.|.
T Consensus 104 l~~~g~GYIivk~ 116 (276)
T pfam01993 104 MEEQGLGYILVKA 116 (276)
T ss_pred HHHCCCCEEEEEC
T ss_conf 9865984799836
No 197
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.02 E-value=13 Score=18.52 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=55.8
Q ss_pred HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 99999789899998897--999999982799899995041296959-----99999982857689959999924998999
Q gi|254780476|r 19 RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISGL-----EITKQIKEDSELQEIPVIAVTAFAMKGDE 91 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG~-----el~~~ir~~~~~~~ipii~~t~~~~~~~~ 91 (123)
.++|-..||.|....+. .-|-++. +-=-..++-+.-|-.+|. +.++.|++.. ++|||+=-+-..+.+.
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLe--e~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a---~VPviVDAGiG~pSdA 197 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLE--EAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA---DVPVIVDAGIGTPSDA 197 (262)
T ss_pred HHHHHHCCCEEEECCCCCHHHHHHHH--HCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHH
T ss_conf 99998679888503688789999998--649668633566566786757889999999738---9988986798976688
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99997699889987
Q gi|254780476|r 92 ERIRKGGCEAYISK 105 (123)
Q Consensus 92 ~~~~~~g~~~~l~K 105 (123)
.+++++|+++.|.-
T Consensus 198 a~aMElG~DaVL~N 211 (262)
T COG2022 198 AQAMELGADAVLLN 211 (262)
T ss_pred HHHHHHCCCEEEHH
T ss_conf 99986055432325
No 198
>PRK07413 hypothetical protein; Validated
Probab=63.70 E-value=13 Score=18.48 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=17.7
Q ss_pred HCCCCEEEEEEECCCCC-H----HHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 27998999950412969-5----999999982857689959999924998999
Q gi|254780476|r 44 QHKPDVIIMDIQLQEIS-G----LEITKQIKEDSELQEIPVIAVTAFAMKGDE 91 (123)
Q Consensus 44 ~~~~dlillD~~mp~~d-G----~el~~~ir~~~~~~~ipii~~t~~~~~~~~ 91 (123)
+..+|+|+||=-..-++ | =|++..|++.|...+ +++|+..-+...
T Consensus 123 sg~ydlVVLDEIn~Al~~Gll~~deVl~~L~~RP~~~e---VVlTGR~AP~eL 172 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVKTLKSRPEGLE---IIITGRAAPQSL 172 (382)
T ss_pred CCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCE---EEEECCCCCHHH
T ss_conf 89989899721667845798059999999970999988---999599999999
No 199
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=63.48 E-value=13 Score=18.46 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCEEEE-----EEECCCCCHHHHH-HHHHHCCCC-CCCCEEEEEECCCHHHHHH
Q ss_conf 999998279989999-----5041296959999-999828576-8995999992499899999
Q gi|254780476|r 38 ALELARQHKPDVIIM-----DIQLQEISGLEIT-KQIKEDSEL-QEIPVIAVTAFAMKGDEER 93 (123)
Q Consensus 38 al~~l~~~~~dlill-----D~~mp~~dG~el~-~~ir~~~~~-~~ipii~~t~~~~~~~~~~ 93 (123)
-++.++++++|+||+ |-.-|.----++. +.+++.... +.+|+|+++|..+..+..+
T Consensus 40 l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls 102 (275)
T TIGR00619 40 LLEILKAEQVDALLVAGDVFDTANPPAEAQELFYAFLLNLSDANPRLPIVVISGNHDSADRLS 102 (275)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHC
T ss_conf 999997389988997000078898879999999999999985389612787047888778611
No 200
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=63.44 E-value=13 Score=18.46 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=56.3
Q ss_pred CCEEEEECCCHHHH----HHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 87789953998999----999999997898999988---------97999999982799899995041296959999999
Q gi|254780476|r 2 LKKVMIVEDNELNM----KLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 (123)
Q Consensus 2 ~kkiLiVDD~~~~~----~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i 68 (123)
.||+|||-|....+ +.+...|+..|..+...+ +..++.+.++++.+|+|+-= -+.+-.+.++.|
T Consensus 31 ~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~D~ivav---GGGS~iD~AKai 107 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL---GGGSPHDCAKGI 107 (383)
T ss_pred CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCHHHHHHHH
T ss_conf 98799982845665746999999998769958996895279699999999999987399999993---896226789999
Q ss_pred H---------------HCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 8---------------28576899599999249989999
Q gi|254780476|r 69 K---------------EDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 69 r---------------~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
. .....+.+|+|.+.+-...+.+.
T Consensus 108 a~~~~~~~~~~d~~g~~~~~~~~lP~iaIPTTaGTGSE~ 146 (383)
T PRK09860 108 ALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEM 146 (383)
T ss_pred HHHHHCCCCHHHHHCCCCCCCCCCCEEEECCCCCCHHHH
T ss_conf 999808998899736675568889889873998457887
No 201
>PRK05636 replicative DNA helicase; Provisional
Probab=63.29 E-value=11 Score=19.00 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=40.0
Q ss_pred HHHHHHCCCEEEEECC--HHH----HHHHHHHCCCCEEEEEEE--CCCCCH-----H---HHHHHHHHCCCCCCCCEEEE
Q ss_conf 9999978989999889--799----999998279989999504--129695-----9---99999982857689959999
Q gi|254780476|r 19 RDLIETSGYIALQTRN--GME----ALELARQHKPDVIIMDIQ--LQEISG-----L---EITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~~--g~e----al~~l~~~~~dlillD~~--mp~~dG-----~---el~~~ir~~~~~~~ipii~~ 82 (123)
...+..+.+.+....+ -.+ +.++-+.+..++|++|+- |+.-+. . ++.+.+|....--++|||++
T Consensus 344 ~~~l~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVDYLQLm~~~~~~~~R~~ev~~ISr~LK~lAkel~vpVi~L 423 (507)
T PRK05636 344 LGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAI 423 (507)
T ss_pred HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99986198899849997699999999999861799989984588456888876689999999999999999979988997
Q ss_pred EECC
Q ss_conf 9249
Q gi|254780476|r 83 TAFA 86 (123)
Q Consensus 83 t~~~ 86 (123)
+=-+
T Consensus 424 sQLn 427 (507)
T PRK05636 424 SQLN 427 (507)
T ss_pred CCCC
T ss_conf 1268
No 202
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.25 E-value=13 Score=18.43 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHHCCCE-EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 99999978989-9998897999999982---7998999950412969599999998285768995999992499899999
Q gi|254780476|r 18 FRDLIETSGYI-ALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 (123)
Q Consensus 18 l~~~l~~~g~~-v~~a~~g~eal~~l~~---~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~ 93 (123)
+-..|+..+.. +....+.++|+..++. .-..++ .+.|-.-++++..+++|+.. .++ +|..-+-...+...+
T Consensus 6 ~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~i--EiTl~t~~a~~~I~~l~~~~--p~~-~iGaGTV~~~e~~~~ 80 (210)
T PRK07455 6 WLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLI--EITWNSDQPAELISQLREKL--PEC-IIGTGTLLTLEDLEE 80 (210)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEE--EEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHH
T ss_conf 9999997997999975999999999999998799889--99689988999999999878--996-898881878999999
Q ss_pred HHHCCCCEEEECCCCHHHHHHH
Q ss_conf 9976998899879898999999
Q gi|254780476|r 94 IRKGGCEAYISKPISLSIFMET 115 (123)
Q Consensus 94 ~~~~g~~~~l~KPi~~~~L~~~ 115 (123)
+.++|++ |+.-|....++.+.
T Consensus 81 a~~aGA~-FiVSP~~~~~vi~~ 101 (210)
T PRK07455 81 AIAAGAQ-FCFTPHVDLELIQA 101 (210)
T ss_pred HHHCCCC-EEECCCCCHHHHHH
T ss_conf 9986999-99868888999999
No 203
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=63.24 E-value=13 Score=18.43 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=53.4
Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-------CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 999978989999889799999998279989999504-------1296959999999828576899599999249989999
Q gi|254780476|r 20 DLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-------LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 20 ~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-------mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
+++...-..-.++.+-+++.+..+.. +|.|.+.-- ++.-.|++.++++++... +|++++-|. ..+...
T Consensus 99 ~~~~~~~iIG~S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~---iP~vAIGGi-~~~nv~ 173 (211)
T COG0352 99 ELLGPGLIIGLSTHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN---IPVVAIGGI-NLENVP 173 (211)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCC-CHHHHH
T ss_conf 74199978983049999999987639-9999988867889998877467899999998279---998998488-999999
Q ss_pred HHHHCCCCEE
Q ss_conf 9997699889
Q gi|254780476|r 93 RIRKGGCEAY 102 (123)
Q Consensus 93 ~~~~~g~~~~ 102 (123)
+..+.|+++.
T Consensus 174 ~v~~~Ga~gV 183 (211)
T COG0352 174 EVLEAGADGV 183 (211)
T ss_pred HHHHHCCCEE
T ss_conf 9998298769
No 204
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=63.18 E-value=12 Score=18.67 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=51.5
Q ss_pred HHHHHHHH------CCCEEEEECCHHH---HHHHHHHCCCCEEEEEEE---CCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999997------8989999889799---999998279989999504---12969599999998285768995999992
Q gi|254780476|r 17 LFRDLIET------SGYIALQTRNGME---ALELARQHKPDVIIMDIQ---LQEISGLEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 17 ~l~~~l~~------~g~~v~~a~~g~e---al~~l~~~~~dlillD~~---mp~~dG~el~~~ir~~~~~~~ipii~~t~ 84 (123)
.-..+|+. ..|....-+-|+. |+..+--++|.+|+-|=- |-..+|-++..-+|+..+.+.+-|+++|-
T Consensus 121 ~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARALv~~P~LvLADEPTAALD~~SGr~VV~Lm~~lA~eqGc~iL~VTH 200 (220)
T TIGR02982 121 KARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARALVARPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILLVTH 200 (220)
T ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 99999986060125540524367861689999999733897676257723322113389999999988771988999836
Q ss_pred C
Q ss_conf 4
Q gi|254780476|r 85 F 85 (123)
Q Consensus 85 ~ 85 (123)
-
T Consensus 201 D 201 (220)
T TIGR02982 201 D 201 (220)
T ss_pred C
T ss_conf 7
No 205
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.94 E-value=14 Score=18.40 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=55.8
Q ss_pred EEEEECCCHH----HHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 7899539989----999999999978989--9-99889799999998279989999504129695999999982857689
Q gi|254780476|r 4 KVMIVEDNEL----NMKLFRDLIETSGYI--A-LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76 (123)
Q Consensus 4 kiLiVDD~~~----~~~~l~~~l~~~g~~--v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ 76 (123)
.|||=|+.-. ..+.++..-+..++. + .++.+-.++.+.+... +|.|.+|=.=|+ ++-+.++.......
T Consensus 153 ~ilikdNHi~~~g~~~~ai~~~r~~~~~~~kIeVEv~~l~ea~~a~~~g-aDiI~LDn~~~e----~~k~~v~~~~~~~~ 227 (272)
T PRK05848 153 CLMLKDTHLKHIKDLKSFIQHARKNIPFTAKIEIECESLEEAKEAMNAG-ADIVMCDNMSVE----ETKEIVAYRNANYP 227 (272)
T ss_pred EEEECHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC-CCEEEECCCCHH----HHHHHHHHHHCCCC
T ss_conf 0788666887726899999999985899846999749999999998459-998995899999----99999998746488
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 95999992499899999997699889
Q gi|254780476|r 77 IPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 77 ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
-..+-.||.-..+...+..+.|+|.+
T Consensus 228 ~v~ieaSGGI~~~ni~~yA~~GvD~I 253 (272)
T PRK05848 228 HVLLEASGNISLETINAYAKSGVDAI 253 (272)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 77999979998999999996599999
No 206
>pfam09936 DUF2168 Uncharacterized protein conserved in bacteria (DUF2168). This domain, found in various hypothetical prokaryotic proteins, has no known function. It is also found in a few prokaryotic tRNA (guanine-N(1)-)-methyltransferases.
Probab=62.54 E-value=14 Score=18.36 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=67.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--CC-------------EEEEECCHHHHHHHHHH---CCCCEEEEEEE-CCCCCHHH
Q ss_conf 77899539989999999999978--98-------------99998897999999982---79989999504-12969599
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETS--GY-------------IALQTRNGMEALELARQ---HKPDVIIMDIQ-LQEISGLE 63 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~--g~-------------~v~~a~~g~eal~~l~~---~~~dlillD~~-mp~~dG~e 63 (123)
++.-||---+..++..++++..| |+ .|..++|-++|++-+.+ .+|-+|..+-. -|+.-+|+
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~~NP~R~eAl~~v~~~~sle~ai~~i~~~~G~~p~vvaTsAr~~~~~is~~ 122 (185)
T pfam09936 43 GRYYIVTPLEAQQALVERILAHWQEGYGGEYNPDRKEALSLVKVVSSLEEAIEDIEKRTGQRPLIVATSARKRPNTISYE 122 (185)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
T ss_conf 66799560199999999999873259786669678999857300602999999999961999779980475689973999
Q ss_pred HHHHHHHCCCCCCCCEEEE--EECCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999982857689959999--92499899999997699889987989
Q gi|254780476|r 64 ITKQIKEDSELQEIPVIAV--TAFAMKGDEERIRKGGCEAYISKPIS 108 (123)
Q Consensus 64 l~~~ir~~~~~~~ipii~~--t~~~~~~~~~~~~~~g~~~~l~KPi~ 108 (123)
-+++.-.+ ..-|++++ ||.....+... ..+|+..|+.
T Consensus 123 ~lr~~i~~---~~~P~LllFGTGwGL~~e~~~-----~~D~iLePI~ 161 (185)
T pfam09936 123 ELRKMIQE---REKPVLLLFGTGWGLAPEVLE-----QADYVLEPIR 161 (185)
T ss_pred HHHHHHHC---CCCCEEEEECCCCCCCHHHHH-----HCCEEECCCC
T ss_conf 99999844---588189996587687799997-----4686670563
No 207
>PRK06857 consensus
Probab=62.46 E-value=14 Score=18.35 Aligned_cols=92 Identities=11% Similarity=0.214 Sum_probs=45.2
Q ss_pred HHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf 99997898-99998897999999982-79989999504129695999999982857689959999924998999999976
Q gi|254780476|r 20 DLIETSGY-IALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG 97 (123)
Q Consensus 20 ~~l~~~g~-~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~ 97 (123)
+.|...+. -+....+.+++..+++. ..-.+=++.+.|-.-++++..+.+|+.. .++ +|..-+--..++..++.++
T Consensus 7 ~~l~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~--p~~-~vGaGTV~~~e~~~~a~~a 83 (209)
T PRK06857 7 EKLRALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSAAAAEAIRLLREAY--PDM-LIGAGTVLTPEQVDAAKEA 83 (209)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHHHC
T ss_conf 9999799799997599999999999999879988999589932999999999758--994-8999937679999999983
Q ss_pred CCCEEEECCCCHHHHHHH
Q ss_conf 998899879898999999
Q gi|254780476|r 98 GCEAYISKPISLSIFMET 115 (123)
Q Consensus 98 g~~~~l~KPi~~~~L~~~ 115 (123)
|++ |+.-|.--.++.+.
T Consensus 84 GA~-FiVSP~~~~~v~~~ 100 (209)
T PRK06857 84 GAD-FIVSPGFNPNTVKY 100 (209)
T ss_pred CCC-EEECCCCCHHHHHH
T ss_conf 999-99908999999999
No 208
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.27 E-value=14 Score=18.33 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=64.0
Q ss_pred HHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999--99999789899998897--99999998279989999504129695-----99999998285768995999992
Q gi|254780476|r 14 NMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 14 ~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~ 84 (123)
..+.+ .+.|-..||.|....+. .-|-++... =-..++=+.-|-.+| .+.++.|++.. ++|||+=-+
T Consensus 110 ~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLe~~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIVDAG 184 (256)
T PRK00208 110 PIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA--GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQA---DVPVIVDAG 184 (256)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC
T ss_conf 68999999999988998978678898999999974--9534520456434798879999999999867---998898578
Q ss_pred CCCHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf 499899999997699889987-----989899999999974
Q gi|254780476|r 85 FAMKGDEERIRKGGCEAYISK-----PISLSIFMETIKKYI 120 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l 120 (123)
-..+.+..+++++|+++.|.- --+|-.+-+.++.++
T Consensus 185 iG~pS~Aa~AMElG~DaVL~NTAIA~A~dPv~MA~A~~~AV 225 (256)
T PRK00208 185 IGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 225 (256)
T ss_pred CCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89766789998625543235568772699899999999999
No 209
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=61.88 E-value=14 Score=18.29 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=46.4
Q ss_pred HHHHHCCCE-EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 999978989-9998897999999982---799899995041296959999999828576899599999249989999999
Q gi|254780476|r 20 DLIETSGYI-ALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 (123)
Q Consensus 20 ~~l~~~g~~-v~~a~~g~eal~~l~~---~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~ 95 (123)
+.|...+.. +..+.+.++|+.+++. .-.. .+.+.|---+.++..+.+|+.. .+--+|-.-+--..++..++.
T Consensus 5 ~~~~~~plvaIlR~~~~~~a~~~~~al~~~Gi~--~iEVTl~tp~a~~~I~~l~~~~--~~~~~iGAGTVlt~e~~~~ai 80 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVKAL--GDDALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHC--CCCEEEEEEECCCHHHHHHHH
T ss_conf 999859979999589999999999999986998--8999179976999999999967--986599862046799999999
Q ss_pred HCCCCEEEECCCCHHHHHHH
Q ss_conf 76998899879898999999
Q gi|254780476|r 96 KGGCEAYISKPISLSIFMET 115 (123)
Q Consensus 96 ~~g~~~~l~KPi~~~~L~~~ 115 (123)
++|++ |+.-|.-..++.+.
T Consensus 81 ~aGA~-FiVSP~~~~~vi~~ 99 (206)
T PRK09140 81 DAGGR-LIVTPNIDPEVIRR 99 (206)
T ss_pred HCCCC-EEECCCCCHHHHHH
T ss_conf 85999-99999998999999
No 210
>PRK11587 putative phosphatase; Provisional
Probab=61.32 E-value=7.3 Score=19.96 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=55.4
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCC-----------------CCEEEEEEECCCCCH-HHHH
Q ss_conf 95399899999999999789899998---89799999998279-----------------989999504129695-9999
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQT---RNGMEALELARQHK-----------------PDVIIMDIQLQEISG-LEIT 65 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~-----------------~dlillD~~mp~~dG-~el~ 65 (123)
+||..+...+.++..++..|...... -.|..++..++... +.....+ ..+-..| .+++
T Consensus 14 LvDS~~~~~~a~~~~~~~~gi~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pG~~elL 92 (218)
T PRK11587 14 LVDSLPAVERAWCNWARRHGLAPDEVLAFIHGKQAITSLRHFMAGKSEAEIQAEFTRLEQIEATDTE-GITALPGAIALL 92 (218)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHH
T ss_conf 3349999999999999983989899999963861899999873689878999999999999998545-983794899999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCC---CEEE-------ECCCCHHHHHHHHHHH
Q ss_conf 9998285768995999992499899999997699---8899-------8798989999999997
Q gi|254780476|r 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC---EAYI-------SKPISLSIFMETIKKY 119 (123)
Q Consensus 66 ~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~---~~~l-------~KPi~~~~L~~~i~~~ 119 (123)
+++++ ..+|+-+.|+...+-........|. +.|+ .|| .|+-++.++++.
T Consensus 93 ~~L~~----~gi~~avvTs~~~~~~~~~~~~~~l~~~~~~v~~ddv~~~KP-~Pd~yl~A~~~L 151 (218)
T PRK11587 93 NHLNK----AGIPWAIVTSGSMPVASARHKAAGLPAPEVFVTAERVKRGKP-EPDAYLLGAQLL 151 (218)
T ss_pred HHHHH----CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHC
T ss_conf 99987----799778872682789999997238997869997110557899-868999999982
No 211
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=61.18 E-value=15 Score=18.21 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCEEEEECCC----HHHHHHHHHHHHHC--CCEEEE--------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 8778995399----89999999999978--989999--------889799999998279989999504129695999999
Q gi|254780476|r 2 LKKVMIVEDN----ELNMKLFRDLIETS--GYIALQ--------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 (123)
Q Consensus 2 ~kkiLiVDD~----~~~~~~l~~~l~~~--g~~v~~--------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ 67 (123)
.|||-++.+| ....+.++..++.. |+++.. ..+-...+..++...||+|++- ...-++..++++
T Consensus 143 ~k~vai~~~d~~~g~~~~~~~~~~~~~~~~g~~vv~~~~~p~~~~~Df~~~i~~i~~~~pd~v~~~--~~~~~~~~~~kq 220 (342)
T cd06329 143 GKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITG--NWGNDLLLLVKQ 220 (342)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHH
T ss_conf 976999369973769999999999998169958876785258887766999999986699999993--775569999999
Q ss_pred HHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 98285768995999992499899999997
Q gi|254780476|r 68 IKEDSELQEIPVIAVTAFAMKGDEERIRK 96 (123)
Q Consensus 68 ir~~~~~~~ipii~~t~~~~~~~~~~~~~ 96 (123)
.|+.. -+.|++..+.. ........-+
T Consensus 221 ~~~~g--~~~~~~~~~~~-~~~~~~~~g~ 246 (342)
T cd06329 221 AADAG--LKLPFYTPYLD-QPGNPAALGE 246 (342)
T ss_pred HHHCC--CCCCEEEEECC-CHHHHHHHHH
T ss_conf 99769--99818997078-7789987566
No 212
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=60.89 E-value=15 Score=18.18 Aligned_cols=109 Identities=18% Similarity=0.334 Sum_probs=63.8
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCC-----CE-----------EEEEEECCCCCH-
Q ss_conf 99539989999999999978989999-------8897999999982799-----89-----------999504129695-
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKP-----DV-----------IIMDIQLQEISG- 61 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~-----dl-----------illD~~mp~~dG- 61 (123)
++||..+...+.+++.+...|+.+.. .....+.+..+..... +. ...--..+-+.|
T Consensus 12 vLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv 91 (221)
T COG0637 12 TLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALELEGLKPIPGV 91 (221)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 80723999999999999985999888999986277615789999987346664458999999999876413567755119
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY 119 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~ 119 (123)
.+++.++|+.. +|+...|++............|..+|+ .|| .|+-++.+.++.
T Consensus 92 ~~~l~~L~~~~----i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP-~Pd~yL~Aa~~L 155 (221)
T COG0637 92 VELLEQLKARG----IPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKP-APDIYLLAAERL 155 (221)
T ss_pred HHHHHHHHHCC----CCEEEECCCHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCC-CCHHHHHHHHHC
T ss_conf 99999987559----98899749838889999998388331563773210467898-979999999984
No 213
>pfam07688 KaiA KaiA domain. The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure.
Probab=60.79 E-value=15 Score=18.17 Aligned_cols=74 Identities=9% Similarity=0.158 Sum_probs=55.7
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 95399899999999999789899998897999999982--7998999950412969599999998285768995999992
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~ 84 (123)
+.=-++...+.++.+|....|.+....++.+.++.+.+ +.+||+++-...... .+..++.+.. --+|.|++-.
T Consensus 5 lll~s~~L~q~~~~~L~~dRY~l~~~~s~~df~~~le~~~e~iDcLvle~~~~~~---~~~~qL~~~G--~LlPaVvl~~ 79 (283)
T pfam07688 5 LFVESEAIAQRLRRIFQGDRHYLSTFQSLDDFCAYLEDKRERIDCLILYYEANSL---PVLNRLYEQG--RLLPAILLEP 79 (283)
T ss_pred EEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCH---HHHHHHHHCC--CCCCEEEEEC
T ss_conf 9828889999999865568558885588889999999572568779995077766---9999999758--5365799715
Q ss_pred C
Q ss_conf 4
Q gi|254780476|r 85 F 85 (123)
Q Consensus 85 ~ 85 (123)
.
T Consensus 80 ~ 80 (283)
T pfam07688 80 S 80 (283)
T ss_pred C
T ss_conf 8
No 214
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=60.49 E-value=15 Score=18.14 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=22.8
Q ss_pred EEEEEEECCC------CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999504129------6959999999828576899599999249989999999769988998798
Q gi|254780476|r 49 VIIMDIQLQE------ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 49 lillD~~mp~------~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
++++|-.|-. .++.++++.+++. ..+|+++|+....+...+.+. |+.+.|.-|+
T Consensus 292 LLv~De~lr~~~~~~re~~~~ll~~ve~~----ggkV~Ivs~~he~Ge~Lk~lG-GiaaILRf~v 351 (352)
T COG1537 292 LLVTDELLRSDDVEEREDVEELLEEVESM----GGKVVIVSTEHEPGERLKALG-GIAAILRFPV 351 (352)
T ss_pred EEEEHHHHCCCCHHHHHHHHHHHHHHHHC----CCEEEEEECCCCCHHHHHHCC-CEEEEEEECC
T ss_conf 88642341463236689999999999973----986999935775067888506-7689998137
No 215
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=60.42 E-value=15 Score=18.14 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=50.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--C---EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHH
Q ss_conf 8778995399899999999999789--8---99-99889799999998279989999504129695-----999999982
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSG--Y---IA-LQTRNGMEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~---~v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~ 70 (123)
.++|-+||=|+...+.-+.+|..+. + .+ ....+|.+.++.. .+.||+|++|..=|..-+ .++.+.+++
T Consensus 99 v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~-~~~yDvII~D~~DP~~~~~~Lfs~eFy~~~~~ 177 (240)
T pfam01564 99 VEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDY-LVKFDVIIVDSTDPVGPAENLFSKEFYDLLKR 177 (240)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 53899975788999999998798524347985599981689999857-25445899958997653344422999999998
Q ss_pred CCCCCCCCEEEE
Q ss_conf 857689959999
Q gi|254780476|r 71 DSELQEIPVIAV 82 (123)
Q Consensus 71 ~~~~~~ipii~~ 82 (123)
.- +.=-|++.
T Consensus 178 ~L--~~~Gi~v~ 187 (240)
T pfam01564 178 AL--KEDGVFVT 187 (240)
T ss_pred HC--CCCCEEEE
T ss_conf 65--99978999
No 216
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=60.31 E-value=15 Score=18.13 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=62.6
Q ss_pred HHHCCCEEEEECCHH--------HHH-HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 997898999988979--------999-99982799899995041296959999999828576899599999249989999
Q gi|254780476|r 22 IETSGYIALQTRNGM--------EAL-ELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 22 l~~~g~~v~~a~~g~--------eal-~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
-...+.++....+|. .+. +.+.+..||+|+.-.-=|..-|-.-+|.+-++ +..|.|+++.........
T Consensus 27 AdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkd 103 (277)
T COG1927 27 ADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKD 103 (277)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCCHHHH
T ss_conf 14579659996166655868888877999985189889995799899994689998743---599779966886313678
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 99976998899879
Q gi|254780476|r 93 RIRKGGCEAYISKP 106 (123)
Q Consensus 93 ~~~~~g~~~~l~KP 106 (123)
...+.|+-.++.|+
T Consensus 104 eleeqGlGYIivk~ 117 (277)
T COG1927 104 ELEEQGLGYIIVKA 117 (277)
T ss_pred HHHHCCCEEEEECC
T ss_conf 99865870799627
No 217
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=60.31 E-value=7.9 Score=19.77 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=50.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 987789953998999999999997898999--988979999999827998999950412969599999998285
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS 72 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~ 72 (123)
|.++|.-||-++...+..+..|...|+.-. ...+|.+++. ...+||.|++....+... -.+.++++...
T Consensus 99 l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~--~~~pfD~Iii~~a~~~~P-~~l~~qL~~gG 169 (213)
T PRK00312 99 LVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWP--AYAPFDRILVTAAAPEIP-RALLDQLAEGG 169 (213)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCHHHH-HHHHHHCCCCC
T ss_conf 629289994289999999999998499876999688766787--669724899984341225-99998453297
No 218
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=59.94 E-value=15 Score=18.09 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=50.7
Q ss_pred CEEEEECCHHHHH---HHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC
Q ss_conf 8999988979999---9998279989999504129695---999999982857689959999924998999999976998
Q gi|254780476|r 27 YIALQTRNGMEAL---ELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE 100 (123)
Q Consensus 27 ~~v~~a~~g~eal---~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~ 100 (123)
|+...-.+-.... +.+++.-+..+++++.-|.... |+-+++||+.- +.|+|+ -+--..+|..++.+.|++
T Consensus 120 fQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~---~~p~i~-KGi~~~~DA~~a~~~G~d 195 (299)
T cd02809 120 FQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW---KGPLIL-KGILTPEDALRAVDAGAD 195 (299)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCEEE-ECCCCHHHHHHHHHCCCC
T ss_conf 7764369999999999999985999899970589878879999999999866---998799-727889999999985998
Q ss_pred EEEE
Q ss_conf 8998
Q gi|254780476|r 101 AYIS 104 (123)
Q Consensus 101 ~~l~ 104 (123)
+++.
T Consensus 196 gI~V 199 (299)
T cd02809 196 GIVV 199 (299)
T ss_pred EEEE
T ss_conf 8997
No 219
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=59.85 E-value=16 Score=18.08 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=46.2
Q ss_pred CCEEEEECCCHHH----HHHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 8778995399899----99999999978989999889---------7999999982799899995041296959999999
Q gi|254780476|r 2 LKKVMIVEDNELN----MKLFRDLIETSGYIALQTRN---------GMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 (123)
Q Consensus 2 ~kkiLiVDD~~~~----~~~l~~~l~~~g~~v~~a~~---------g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i 68 (123)
.||+|||-|.... .+-+...|...|.++...++ ..++++.++++.||+|+- +-+.+-.+.++.|
T Consensus 482 ~kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~~~~~~~~D~IIa---lGGGS~iDaAKai 558 (862)
T PRK13805 482 KKRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIA---LGGGSPMDAAKIM 558 (862)
T ss_pred CCEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHH
T ss_conf 9779998785187678899999999986983999669899939799999999998649999999---4783488999999
No 220
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=59.65 E-value=16 Score=18.06 Aligned_cols=87 Identities=10% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHCCCE-EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 999978989-9998897999999982---799899995041296959999999828576899599999249989999999
Q gi|254780476|r 20 DLIETSGYI-ALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 (123)
Q Consensus 20 ~~l~~~g~~-v~~a~~g~eal~~l~~---~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~ 95 (123)
.+|+..+.. +....+.++|.+.++. .-..+ +.+.|-.-+.++..+++|+.. .++ +|..-+-...+...++.
T Consensus 3 ~~L~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~--iEiTl~t~~a~~~I~~l~~~~--p~~-~iGaGTV~~~e~~~~a~ 77 (196)
T pfam01081 3 SILREAKIVPVIVIKDKEDALPLAEALAAGGIRV--LEVTLRTPCALDAIRLLRKNR--PDA-LVGAGTVLNAQQLAEAA 77 (196)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHH
T ss_conf 7896699799997799999999999999879988--999479827999999999649--996-79998376899999999
Q ss_pred HCCCCEEEECCCCHHHH
Q ss_conf 76998899879898999
Q gi|254780476|r 96 KGGCEAYISKPISLSIF 112 (123)
Q Consensus 96 ~~g~~~~l~KPi~~~~L 112 (123)
++|++ |+.-|..-.++
T Consensus 78 ~aGA~-FivSP~~~~~v 93 (196)
T pfam01081 78 EAGAQ-FVVSPGLTADL 93 (196)
T ss_pred HCCCC-EEECCCCHHHH
T ss_conf 74999-99978763999
No 221
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=59.60 E-value=16 Score=18.05 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 16 KLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 16 ~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
.-+.++-+..||.+..+..|.-|.+.+++.+|+.|+-=--. .++.+.++.... ..+|+..+-
T Consensus 76 ~~l~~la~~~G~~v~i~~Ggt~~rkii~~~~p~~IigVAC~-----~dL~~gi~~~~~-~~ip~~gV~ 137 (158)
T pfam01976 76 GDLKELAEEYGYKVYIVPGGTFAKKIIKEYRPKAIIGVACE-----RDLNEGIQDLKK-KGIPVQGVL 137 (158)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEEECH-----HHHHHHHHHHHC-CCCCEEEEE
T ss_conf 27999999809879996482899999987299989999204-----899999998650-899869997
No 222
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.53 E-value=16 Score=18.05 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=61.2
Q ss_pred EE-EECCC--HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEEC-CCCCHHHHHHHHHHCCC--CCCC
Q ss_conf 89-95399--899999999999789899998897999999982-799899995041-29695999999982857--6899
Q gi|254780476|r 5 VM-IVEDN--ELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQL-QEISGLEITKQIKEDSE--LQEI 77 (123)
Q Consensus 5 iL-iVDD~--~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~m-p~~dG~el~~~ir~~~~--~~~i 77 (123)
|- |--|. .-..+.++.+-.-.|..+..+.+..+.-+.+.. ..+|+|++|.-= ...| .+...++++.-. ..+.
T Consensus 209 V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D~IlIDTAGrs~~d-~~~~~el~~~~~~~~~~~ 287 (388)
T PRK12723 209 IKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLIDTIGKSPKD-FMKLAEMKELLNACGRDA 287 (388)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCC
T ss_conf 7999807875889999999999978806985788999999997249999999589988568-999999999997418984
Q ss_pred CE-EEEEECCCHHHHHHHHH----CCCCEE-EEC
Q ss_conf 59-99992499899999997----699889-987
Q gi|254780476|r 78 PV-IAVTAFAMKGDEERIRK----GGCEAY-ISK 105 (123)
Q Consensus 78 pi-i~~t~~~~~~~~~~~~~----~g~~~~-l~K 105 (123)
.+ +++++.....+..+..+ .|.+++ ++|
T Consensus 288 ~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I~TK 321 (388)
T PRK12723 288 EFHLAVSSTTKTSDIKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 5999987989999999999984279998499983
No 223
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=58.91 E-value=16 Score=17.98 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=64.3
Q ss_pred HHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99999--99999789899998897--99999998279989999504129695-----99999998285768995999992
Q gi|254780476|r 14 NMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 14 ~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~ 84 (123)
..+.+ .+.|-..||.|....+. .-|.++..- =-..++=+.-|-.+| ...++.|++.. ++|||+=-+
T Consensus 108 ~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLed~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIVDAG 182 (246)
T pfam05690 108 PIETLKAAEILVKEGFTVLPYTTDDPVLARRLEEA--GCAAVMPLGAPIGSGLGLRNPENLRIIIEEA---DVPVIVDAG 182 (246)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC
T ss_conf 78999999999978998988617998999999875--9849862244013688868999999999967---998898489
Q ss_pred CCCHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf 499899999997699889987-----989899999999974
Q gi|254780476|r 85 FAMKGDEERIRKGGCEAYISK-----PISLSIFMETIKKYI 120 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l 120 (123)
-..+.+..+++++|+++.|.- --++-.+-+.++.++
T Consensus 183 iG~pS~Aa~aMElG~DaVLvNTAIA~A~dPv~MA~A~~~Av 223 (246)
T pfam05690 183 IGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFKLAV 223 (246)
T ss_pred CCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89678899999745677773067773799899999999999
No 224
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.79 E-value=16 Score=17.97 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 99999999978989-9998897999999982-799899995041296959999999828576899599999249989999
Q gi|254780476|r 15 MKLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 15 ~~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
++-+-..|+..+.. +....+.+++..+++. ..=.+=++.+.|-.-++++..+.+++.. .++ +|..-+-...+...
T Consensus 5 ~~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~--p~~-~vGaGTVl~~e~~~ 81 (212)
T PRK06015 5 TEKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEV--EEA-IVGAGTILNAKQFE 81 (212)
T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCHHHHH
T ss_conf 999999998799799997799999999999999879988999689951999999999869--996-79542115699999
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 9997699889987989899999999
Q gi|254780476|r 93 RIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 93 ~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
++.++|++ |+.-|.-..++.+.-+
T Consensus 82 ~a~~aGA~-FiVSP~~~~~v~~~a~ 105 (212)
T PRK06015 82 DAAKAGSR-FIVSPGTTQELLAAAN 105 (212)
T ss_pred HHHHCCCC-EEECCCCCHHHHHHHH
T ss_conf 99984998-9985899999999999
No 225
>PRK11574 hypothetical protein; Provisional
Probab=58.60 E-value=11 Score=18.83 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=47.1
Q ss_pred CCCEEEEE-CCCHHH--HHHHHHHHHHCCCEEEEECCHHH-----------------HHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 98778995-399899--99999999978989999889799-----------------99999827998999950412969
Q gi|254780476|r 1 MLKKVMIV-EDNELN--MKLFRDLIETSGYIALQTRNGME-----------------ALELARQHKPDVIIMDIQLQEIS 60 (123)
Q Consensus 1 m~kkiLiV-DD~~~~--~~~l~~~l~~~g~~v~~a~~g~e-----------------al~~l~~~~~dlillD~~mp~~d 60 (123)
|+||+||. -|--.. .-...++|.+.|++|..++=+.+ .++-+....||+|++=-.||+.+
T Consensus 1 M~kk~LV~lA~GfEEiEa~~~vDvLRRagi~V~~asv~~~~~~~v~gs~gi~i~aD~~l~~v~~~~yD~ivlPGG~~ga~ 80 (196)
T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLTITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAE 80 (196)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCEEECCCCHHHCCCCCCCEEECCCCCHHHH
T ss_conf 98569999169850212518999997779849999853899737994799789578677777825588899178803799
Q ss_pred HHH----HHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 599----9999982857689959999924
Q gi|254780476|r 61 GLE----ITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 61 G~e----l~~~ir~~~~~~~ipii~~t~~ 85 (123)
-+. +.+.+|+... +.-+|-++-+.
T Consensus 81 ~L~~~~~v~~~lk~~~~-~gK~iAAICAa 108 (196)
T PRK11574 81 CFRDSPLLVETVKQFHR-SGRIVAAICAA 108 (196)
T ss_pred HHHHCHHHHHHHHHHHH-CCCEEEEECHH
T ss_conf 98739899999999998-79919998240
No 226
>PRK13140 consensus
Probab=58.50 E-value=16 Score=17.94 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999828576899599999249------9899999997699889987989899
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI 111 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~ 111 (123)
+++++++|+. .++|++++|.++ .+....++.++|+++.+.--+.+++
T Consensus 79 ~~~~~~~r~~---~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee 131 (257)
T PRK13140 79 FEQLKDIRKE---VQIPLILMGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDD 131 (257)
T ss_pred HHHHHHHHCC---CCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999997436---8988899905599985179999999998499869835998567
No 227
>PRK13175 consensus
Probab=58.37 E-value=16 Score=17.93 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=48.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC----HH------HHHHHHHHC
Q ss_conf 87789953998999999999997898999988979999999827998999950412969----59------999999828
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS----GL------EITKQIKED 71 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~d----G~------el~~~ir~~ 71 (123)
|+||.|+|=..-+..-+.+.|+..|+++....+..+. ..+|.+++ |+.. +. .+...|++.
T Consensus 1 M~kI~IiD~g~gn~~si~~al~~lg~~~~i~~~~~~i------~~~d~lIL----PGvGsf~~~~~~l~~~~l~~~i~~~ 70 (206)
T PRK13175 1 MPKIAVIDYGMGNLHSVCKALERLGAEPILTSDPADL------LAADALIL----PGVGAFDPAMQNLRSRGLIPPIKDA 70 (206)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHH------HCCCEEEE----CCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 9879999799768999999999879989997998998------32892896----8998526788755531871689999
Q ss_pred CCCCCCCEEEEE
Q ss_conf 576899599999
Q gi|254780476|r 72 SELQEIPVIAVT 83 (123)
Q Consensus 72 ~~~~~ipii~~t 83 (123)
- ....||+.+-
T Consensus 71 ~-~~g~PiLGIC 81 (206)
T PRK13175 71 I-ASGKPFLGIC 81 (206)
T ss_pred H-HCCCCEEEEE
T ss_conf 8-5699779986
No 228
>PHA02518 ParA-like protein; Provisional
Probab=58.35 E-value=16 Score=17.93 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH--CC-CEEEEECCHHHHHHHHH--HCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 87789953998999999999997--89-89999889799999998--27998999950412969599999998
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET--SG-YIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLEITKQIK 69 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~--~g-~~v~~a~~g~eal~~l~--~~~~dlillD~~mp~~dG~el~~~ir 69 (123)
.+|||+||=||.- .....+.. .+ -.+....-+......+. ...||.|++|. |...|..+...+.
T Consensus 29 G~~VlliD~DpQ~--s~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~viID~--pp~~~~~~~~al~ 97 (211)
T PHA02518 29 GHKVLLVDLDPQG--SSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDG--APQDSELARAALR 97 (211)
T ss_pred CCCEEEEECCCCC--CHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHH
T ss_conf 9948999779996--7889998522689974012136779999997406788899889--9974299999999
No 229
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=57.73 E-value=16 Score=18.05 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEEECCHHHH-HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 5399899999999999789899998897999-9999827998999950412969599999998285768
Q gi|254780476|r 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQ 75 (123)
Q Consensus 8 VDD~~~~~~~l~~~l~~~g~~v~~a~~g~ea-l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~ 75 (123)
|+|-....++|.++.+-.+-.|.+|.||... +..++.+--..-+.++.+|-+|-++|+|.| +|.++
T Consensus 266 l~n~~~~~~vL~k~~~f~~d~ilVAHNGasFD~~Fl~~~~~k~~~~~~~~p~IDTL~Lar~l--nP~y~ 332 (1264)
T TIGR01405 266 LENAPEIEEVLEKFKEFLKDSILVAHNGASFDIGFLNTNFEKVGLEPLENPVIDTLELARAL--NPEYK 332 (1264)
T ss_pred HCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--CCCCC
T ss_conf 37984178999999997697588862761036688988987627742336511388999983--73113
No 230
>PRK03612 spermidine synthase; Provisional
Probab=57.67 E-value=17 Score=17.86 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=49.0
Q ss_pred CEEEEECCCHHHHHHHHHH--HHHCCC------EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH------HHHHHH
Q ss_conf 7789953998999999999--997898------999-9889799999998279989999504129695------999999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDL--IETSGY------IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISG------LEITKQ 67 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~--l~~~g~------~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG------~el~~~ 67 (123)
++|-+||=|+...+..++. |..++. .+. ...||-.-++.. .++||+|++|..=|...+ -|+.+.
T Consensus 318 e~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~-~~~yDvIi~D~pdP~~~~~~~LYs~eFY~~ 396 (516)
T PRK03612 318 EQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-PETFDAIIVDLPDPSNPALGKLYSVEFYRL 396 (516)
T ss_pred CEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 6378995188999999857214444123234996489853789999868-887888998189979952246753999999
Q ss_pred HHHCCCCCCCCEEEE
Q ss_conf 982857689959999
Q gi|254780476|r 68 IKEDSELQEIPVIAV 82 (123)
Q Consensus 68 ir~~~~~~~ipii~~ 82 (123)
+|+.- +.=-+++.
T Consensus 397 ~~~~L--~~~G~~v~ 409 (516)
T PRK03612 397 LKRRL--APDGLLVV 409 (516)
T ss_pred HHHHC--CCCCEEEE
T ss_conf 99844--99958999
No 231
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=57.60 E-value=17 Score=17.85 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 9799999998279989999504129-695--9999999828576899599999249989999999769988998
Q gi|254780476|r 34 NGMEALELARQHKPDVIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 34 ~g~eal~~l~~~~~dlillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
+..+.++.+....-.++++|+.--+ +.| +++++++++.. ++|+++--+-...++..++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~~eii~t~Id~dGt~~G~d~~l~~~i~~~~---~~pvi~sGGv~s~~di~~l~~~g~~gviv 217 (233)
T cd04723 147 GPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA---DIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 899999999965895999864344656777999999999868---99899988999999999999789989998
No 232
>PRK09165 replicative DNA helicase; Provisional
Probab=57.10 E-value=16 Score=17.93 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=39.8
Q ss_pred HHHHHHCCCEEEEEC--CHHH----HHHHHHHCCCCEEEEEEE--CC--CCC-H----H---HHHHHHHHCCCCCCCCEE
Q ss_conf 999997898999988--9799----999998279989999504--12--969-5----9---999999828576899599
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGME----ALELARQHKPDVIIMDIQ--LQ--EIS-G----L---EITKQIKEDSELQEIPVI 80 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~e----al~~l~~~~~dlillD~~--mp--~~d-G----~---el~~~ir~~~~~~~ipii 80 (123)
..-+..+++.+.... +-.+ +..+-+++..++|++|+- |. ... + . ++.+.+|....--++|||
T Consensus 296 ~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livIDYLqLi~~~~~~~~~~R~~ev~~Isr~LK~lAkel~ipVi 375 (484)
T PRK09165 296 SQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVIDYLQLIRGSSKRSQDNRVQEISEITQGLKALAKELNIPVI 375 (484)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99997198489779998799999999999986099889995176357888886121999999999999999999699699
Q ss_pred EEEECC
Q ss_conf 999249
Q gi|254780476|r 81 AVTAFA 86 (123)
Q Consensus 81 ~~t~~~ 86 (123)
++|=-+
T Consensus 376 ~LsQLn 381 (484)
T PRK09165 376 ALSQLS 381 (484)
T ss_pred EECCCC
T ss_conf 974578
No 233
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=56.89 E-value=17 Score=17.78 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=23.9
Q ss_pred CEEEEECCC---HHHHHHHHHHHHHCCC-EEEEE-CCH
Q ss_conf 778995399---8999999999997898-99998-897
Q gi|254780476|r 3 KKVMIVEDN---ELNMKLFRDLIETSGY-IALQT-RNG 35 (123)
Q Consensus 3 kkiLiVDD~---~~~~~~l~~~l~~~g~-~v~~a-~~g 35 (123)
|||+||||+ -++.+.+..++...|- +|... .+.
T Consensus 361 krVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasP 398 (467)
T TIGR01134 361 KRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASP 398 (467)
T ss_pred CEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 75899942412071378999999872983898762588
No 234
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.88 E-value=17 Score=17.78 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHCCC-CEEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE-EECCC
Q ss_conf 897999999982799-89999504129-695--99999998285768995999992499899999997699889-98798
Q gi|254780476|r 33 RNGMEALELARQHKP-DVIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY-ISKPI 107 (123)
Q Consensus 33 ~~g~eal~~l~~~~~-dlillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~-l~KPi 107 (123)
-+..+.++.+..... .+++.|+.--+ +.| +++++++.+. .++|||+--+-...+|..++.+.|+++. +-|-+
T Consensus 148 ~~~~d~~~~~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~~---~~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkAl 224 (234)
T PRK13587 148 LNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA 224 (234)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 6799999999743987899840266574557999999999976---7999999899899999999998899899999750
No 235
>pfam06073 DUF934 Bacterial protein of unknown function (DUF934). This family consists of several bacterial proteins of unknown function. One of the members of this family is thought to be an oxidoreductase.
Probab=56.42 E-value=18 Score=17.74 Aligned_cols=74 Identities=5% Similarity=0.146 Sum_probs=51.3
Q ss_pred HHCCCCEEEEEEECCC---CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHH
Q ss_conf 8279989999504129---695999999982857689959999924998999999976998899879-898999999999
Q gi|254780476|r 43 RQHKPDVIIMDIQLQE---ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKK 118 (123)
Q Consensus 43 ~~~~~dlillD~~mp~---~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP-i~~~~L~~~i~~ 118 (123)
...-..+-++.+..|. .-||..++.+|+...++.- |--++.-..+-...+...|++.|..++ .+++..++.++.
T Consensus 14 ~~~L~~l~lI~i~Fp~f~DGRgfS~Ar~LR~r~gy~Ge--lRA~G~vl~DQl~~~~R~Gfdsf~l~~~~~~~~a~~~l~~ 91 (110)
T pfam06073 14 APDLDRLALIALDFPAFTDGRGYSQARLLRERYGYKGE--LRAVGDVLRDQLFFMLRCGFDSFALRADKDLEDALKALDR 91 (110)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCC--EEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 87545576799988987686240799999997199871--5774450098999999759887975698899999988620
No 236
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=56.38 E-value=18 Score=17.73 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=69.5
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHH---HHHCCCCEEEEEEEC----CCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 53998999999999997898999--98897999999---982799899995041----2969599999998285768995
Q gi|254780476|r 8 VEDNELNMKLFRDLIETSGYIAL--QTRNGMEALEL---ARQHKPDVIIMDIQL----QEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 8 VDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~---l~~~~~dlillD~~m----p~~dG~el~~~ir~~~~~~~ip 78 (123)
++|.+...+. -.-|...|+.+. -..+|-..+.. ++..++|.+=+|-.+ |+- -.+.+.|......-.+.
T Consensus 603 m~d~e~a~~~-L~~Lr~lGV~IALDDFGTGYSSLsYLs~Lk~LPID~LKIDRSFV~~L~~D--~aiv~aIiaLA~~LgL~ 679 (728)
T PRK11829 603 IQDLDEALRL-LRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPED--DAIARIISCVSDVLKVR 679 (728)
T ss_pred HCCHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECHHHHCCCCCC--HHHHHHHHHHHHHCCCE
T ss_conf 2299999999-99999789989996988743638999874169999770796886578888--99999999999987996
Q ss_pred EEEEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHH
Q ss_conf 99999249989999999769988----998798989999999
Q gi|254780476|r 79 VIAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETI 116 (123)
Q Consensus 79 ii~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i 116 (123)
+|+ -|-...+......+.|++. |+.||+..++|.+.-
T Consensus 680 VVA-EGVET~eQl~~L~~lGCd~~QGYlFSkPLP~dEFEarY 720 (728)
T PRK11829 680 VMA-EGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 720 (728)
T ss_pred EEE-ECCCHHHHHHHHHHCCCCEECCCEECCCCCHHHHHHHH
T ss_conf 999-67980999999997699975468426689999999999
No 237
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.35 E-value=18 Score=17.73 Aligned_cols=103 Identities=10% Similarity=0.112 Sum_probs=63.8
Q ss_pred CCEEEEECCCH---HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHCC----C
Q ss_conf 87789953998---9999999999978989999889799999998279989999504-12969599999998285----7
Q gi|254780476|r 2 LKKVMIVEDNE---LNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-LQEISGLEITKQIKEDS----E 73 (123)
Q Consensus 2 ~kkiLiVDD~~---~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-mp~~dG~el~~~ir~~~----~ 73 (123)
.|||-+|--|. -..+.++.+-+-.|.-+..+.+..+..+.+..+..|+||+|.- +...|- .-+.+++..- .
T Consensus 252 ~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlILIDTAGrS~rd~-~~~~eL~~ll~~~~~ 330 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGE 330 (432)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCCH-HHHHHHHHHHHHHCC
T ss_conf 9927999526653779999999999859945995189999999985699999992999897899-999999999986366
Q ss_pred CCCC-CEEEEEECCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf 6899-599999249989999999----7699889-987
Q gi|254780476|r 74 LQEI-PVIAVTAFAMKGDEERIR----KGGCEAY-ISK 105 (123)
Q Consensus 74 ~~~i-pii~~t~~~~~~~~~~~~----~~g~~~~-l~K 105 (123)
...+ ..+++|+.....+..... ..+.+++ ++|
T Consensus 331 ~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfTK 368 (432)
T PRK12724 331 KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 78851799997889989999999984269998499971
No 238
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=55.47 E-value=18 Score=17.64 Aligned_cols=83 Identities=27% Similarity=0.240 Sum_probs=49.1
Q ss_pred CCEEEEECCCHH----HHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 877899539989----99999999997898999988---------97999999982799899995041296959999999
Q gi|254780476|r 2 LKKVMIVEDNEL----NMKLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 (123)
Q Consensus 2 ~kkiLiVDD~~~----~~~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i 68 (123)
.+|+|||-|... ..+.+...|+..|+++.... +-.++++.++++.+|+|+-= -+.+-++.++.+
T Consensus 22 g~r~llVt~~~~~~~g~~~~l~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai---GGGS~iD~aK~i 98 (312)
T pfam00465 22 GARALIVTDPSLKKLGLLDRVLDSLEEAGIEVVVFDGVEPNPTLEEVDEAAAAAREEGADVIIAV---GGGSVIDTAKAI 98 (312)
T ss_pred CCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHH
T ss_conf 99799998958566763999999999749949998582799999999999999996499899980---897612499999
Q ss_pred HH---------------CCCCCCCCEEEEEECCC
Q ss_conf 82---------------85768995999992499
Q gi|254780476|r 69 KE---------------DSELQEIPVIAVTAFAM 87 (123)
Q Consensus 69 r~---------------~~~~~~ipii~~t~~~~ 87 (123)
.- ....+.+|+|.+-+-..
T Consensus 99 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 132 (312)
T pfam00465 99 ALLLTNPGDVWDYLGGKKLTKPALPLIAIPTTAG 132 (312)
T ss_pred HHHHCCCCCHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf 9997199988998557655567898899717866
No 239
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=55.11 E-value=19 Score=17.61 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=38.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 77899539989999999999978989999-8897999999982799899995041
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQL 56 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~m 56 (123)
-+|.-+|-++.-.+.+++.++..|..+.. ..++...-....+..||.|++|.-=
T Consensus 270 ~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILlDaPC 324 (428)
T PRK10901 270 AQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 324 (428)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEECCCC
T ss_conf 9289996988899999999997599739997765572331344567879975898
No 240
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=55.10 E-value=19 Score=17.61 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=68.9
Q ss_pred EECCCHHHHHHHHHHHHHCC-CE------EEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf 95399899999999999789-89------999889799999998279989999504129-69599999998285768995
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSG-YI------ALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g-~~------v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ip 78 (123)
+-.|...+.+.++++.+..+ .. +..+.+..+|++.+.+--+|-|+..-+=+. .+|.++++++.+.. +=+
T Consensus 95 L~~dg~iD~~~~~~Li~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~~~~A~~G~~~L~~L~~~a---~~~ 171 (248)
T PRK11572 95 LDVDGHVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILTSGQQSDAEQGLSLIMELIAQG---DAP 171 (248)
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC---CCC
T ss_conf 88999849999999999748980798620221499999999999759998988999787778899999999844---996
Q ss_pred EEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 999992499899999997699889
Q gi|254780476|r 79 VIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 79 ii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+|+--+.-......+..+.|+..|
T Consensus 172 iIm~GgGV~~~Ni~~~~~tG~~ei 195 (248)
T PRK11572 172 IIMAGAGVRAENLQKFLDAGVREV 195 (248)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 898789989999999997597789
No 241
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.06 E-value=19 Score=17.60 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=52.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC--CCEEEEEEECCCCCHH-HHHHHHHHCCCCCCC
Q ss_conf 9877899539989999999999978989999889799999998279--9899995041296959-999999828576899
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL-EITKQIKEDSELQEI 77 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~--~dlillD~~mp~~dG~-el~~~ir~~~~~~~i 77 (123)
|+|||||.--+.-.=..+...|...|+.+..+.--++.++.+.++. ..+.+.-...-+.+.. ++++++.+.. ..+
T Consensus 1 M~~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~--g~i 78 (256)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAH--GCP 78 (256)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHH--CCC
T ss_conf 999899984602999999999998899899998988999999997679976999811799999999999999983--998
Q ss_pred CEEEE
Q ss_conf 59999
Q gi|254780476|r 78 PVIAV 82 (123)
Q Consensus 78 pii~~ 82 (123)
-+++.
T Consensus 79 Dilin 83 (256)
T PRK07024 79 DVVIA 83 (256)
T ss_pred CEEEE
T ss_conf 79998
No 242
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=54.70 E-value=19 Score=17.57 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHCCCCEE
Q ss_conf 599999998285768995999992499-899999997699889
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAY 102 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~-~~~~~~~~~~g~~~~ 102 (123)
-|+++++|++. .+++|+++.-++.. .++..++.+.|+.-+
T Consensus 189 ~~d~l~~I~~~--v~~vPLVLHGgSG~~~e~i~~ai~~Gi~Kv 229 (293)
T PRK07315 189 DLDHLEKLTEA--VPGFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred CHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf 89999999851--799857975899999999999998195588
No 243
>PRK13180 consensus
Probab=54.67 E-value=19 Score=17.57 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 877899539989999999999978989999889799999998279989999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM 52 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlill 52 (123)
||||.|||=..-+..-+.+.|+..|+.+....+..+.- .+|.+++
T Consensus 1 MkkI~IiDyg~gNi~Sv~~al~~~g~~~~i~~~~~~~~------~~d~lIl 45 (209)
T PRK13180 1 MKRVVVLDYGSGNLRSAQRALERVGAEVEVTADPDAAL------NADGLVV 45 (209)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHH------HCCEEEE
T ss_conf 97799997894389999999998699899979999995------3896899
No 244
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=54.26 E-value=19 Score=17.53 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=48.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----HHH----HHHHHCCC
Q ss_conf 8778995399899999999999789899998897999999982799899995041296959----999----99982857
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL----EIT----KQIKEDSE 73 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~----el~----~~ir~~~~ 73 (123)
||+|.|+|=-.-+...+.+.|+..|+.+....+.++. ..+|.+++ |+...+ +-+ ..|++..
T Consensus 1 Mk~I~Iid~G~~n~~si~~~l~~lg~~~~i~~~~~~l------~~~d~iIL----PGvG~~~~~~~~l~~~~~~i~~~~- 69 (201)
T PRK13143 1 MKMIVIIDYGLGNLRSVSKGLERAGADVEITSDPEEI------LSADGIVL----PGVGAFGDVMENLGPLKETINEAV- 69 (201)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHH------HHCCEEEE----CCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 9889999889719999999999869859992899998------43796797----388818899987651579999999-
Q ss_pred CCCCCEEEEE
Q ss_conf 6899599999
Q gi|254780476|r 74 LQEIPVIAVT 83 (123)
Q Consensus 74 ~~~ipii~~t 83 (123)
.+..||+.+=
T Consensus 70 ~~~~PiLGIC 79 (201)
T PRK13143 70 DDGKPFLGIC 79 (201)
T ss_pred HCCCCEEEEE
T ss_conf 8699879980
No 245
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=54.01 E-value=20 Score=17.50 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=49.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC----CCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 899539989999999999978989999889799999998279989999504129----6959999999828576899599
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE----ISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~----~dG~el~~~ir~~~~~~~ipii 80 (123)
|+|||--..+..-+.+.|+..|+++....+-.. .+.+....||-|++.-. |+ .+-..+.+++.+ ..+|++
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~-~~~~~~~~~dgvils~G-P~~~~~~~~~~~~~~i~~----~~~Pil 74 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTP-LEEIKLKNPKGIILSGG-PSSVYEEDAPRVDPEIFE----LGVPVL 74 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHCCCCEEEECCC-CCCCCCCCCCHHHHHHHH----CCCCEE
T ss_conf 799999863899999999977994999969999-89997349898998999-998555798333099984----799999
Q ss_pred EEE
Q ss_conf 999
Q gi|254780476|r 81 AVT 83 (123)
Q Consensus 81 ~~t 83 (123)
.+-
T Consensus 75 GIC 77 (181)
T cd01742 75 GIC 77 (181)
T ss_pred EEH
T ss_conf 985
No 246
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.81 E-value=20 Score=17.49 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=62.5
Q ss_pred CEEE-EECCCHH---HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 7789-9539989---9999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVM-IVEDNEL---NMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiL-iVDD~~~---~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
|||- +-+|++. .++.++..++..|+++... .+-...+..+++..||.|++-.. ..++..++++.|+.
T Consensus 141 kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~--~~~~~~~~kqa~~~ 218 (351)
T cd06334 141 KKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGW--GVMNPVAIKEAKRV 218 (351)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHC
T ss_conf 7899995686276899999999999769979888806999835899999999769899999377--37899999999975
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 57689959999924998999999976998899
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
. + +.|++..+....+.....+-+. +++++
T Consensus 219 G-~-~~~~ig~~~~~~~~~~~~aG~a-a~G~~ 247 (351)
T cd06334 219 G-L-DDKFIGNWWSGDEEDVKPAGDA-AKGYK 247 (351)
T ss_pred C-C-CCCEEEEECCCCHHHHHHHHHH-CCCEE
T ss_conf 9-9-9857975167889999972111-17738
No 247
>PRK13561 putative phosphodiesterase; Provisional
Probab=53.15 E-value=20 Score=17.42 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHH---CCCCEEEEEEEC----CCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 98999999999997898999--98897999999982---799899995041----2969599999998285768995999
Q gi|254780476|r 11 NELNMKLFRDLIETSGYIAL--QTRNGMEALELARQ---HKPDVIIMDIQL----QEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~---~~~dlillD~~m----p~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
+..........|+..|+.+- -..+|-..+..++. -++|.+=+|-.+ |+ .-.+++.|-+..+.-.+++|+
T Consensus 532 ~~~~~~~~l~~Lr~~Gv~ialDDFGtGySSL~yL~~~~~Lpid~lKID~sfv~~l~~--d~~iv~aii~la~~lgl~vIA 609 (651)
T PRK13561 532 DPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPE--DSSMVAAIIMLAQSLNLQMIA 609 (651)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCEEEECHHHHCCCCC--CHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999999978999999899996420999853467999979889899738866--399999999999987995999
Q ss_pred EEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHH
Q ss_conf 99249989999999769988----99879898999999
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEA----YISKPISLSIFMET 115 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~ 115 (123)
.|-..++......+.|++. |+.||+..++|...
T Consensus 610 -EGVEt~~q~~~L~~lGcd~~QGy~fs~Plp~~eFe~~ 646 (651)
T PRK13561 610 -EGVETEAQRDWLAKAGVGVAQGFLFARPLPIEIFEER 646 (651)
T ss_pred -ECCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
T ss_conf -2688499999999769998756813748999999998
No 248
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=53.15 E-value=20 Score=17.42 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=63.0
Q ss_pred HHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 9999978989999889--799999998279989999504129695-----999999982857689959999924998999
Q gi|254780476|r 19 RDLIETSGYIALQTRN--GMEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTAFAMKGDE 91 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~~--g~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~~~~~~~~ 91 (123)
.+.|-..||.|....+ ..-|.++..- =-..+|=+.-|-.+| ...++.|++.. ++|||+=-+-..+.+.
T Consensus 191 ae~Lv~eGF~VlpY~~dDpv~akrLed~--Gc~avMPlgsPIGSg~Gi~n~~~i~~i~e~~---~vpvivDAGiG~pS~A 265 (327)
T PRK11840 191 AEVLVKEGFQVMVYCSDDPIAAKRLEDA--GAVAVMPLGAPIGSGLGIQNPYTIRLIVEGA---KVPVLVDAGVGTASDA 265 (327)
T ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHH
T ss_conf 9999978988988716986899999875--9838862245234788868999999999736---9978995798987899
Q ss_pred HHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf 99997699889987-----989899999999974
Q gi|254780476|r 92 ERIRKGGCEAYISK-----PISLSIFMETIKKYI 120 (123)
Q Consensus 92 ~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l 120 (123)
.++++.|+++.|.- --+|-.+-++++.++
T Consensus 266 ~~aMElG~daVL~NTAiA~a~~Pv~MA~A~~~av 299 (327)
T PRK11840 266 AVAMELGCDGVLMNTAIAEAKNPILMARAMKLAV 299 (327)
T ss_pred HHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9998636666663367672699799999999999
No 249
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=52.75 E-value=20 Score=17.39 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=10.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 789953998999999999997898
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGY 27 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~ 27 (123)
+|.-+|=||...+.++..++..+.
T Consensus 126 ~V~a~DlNp~a~~~l~~N~~lN~v 149 (199)
T pfam02475 126 RVYAVELNPEAVKYLKENIKLNKV 149 (199)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 899982899999999999998099
No 250
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=51.83 E-value=21 Score=17.30 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=36.0
Q ss_pred CEEEEECCCHHH---------HHHHHHHHHHCCCEEEEECCHH------HHHHHHHH--CCCCEEEEEEEC
Q ss_conf 778995399899---------9999999997898999988979------99999982--799899995041
Q gi|254780476|r 3 KKVMIVEDNELN---------MKLFRDLIETSGYIALQTRNGM------EALELARQ--HKPDVIIMDIQL 56 (123)
Q Consensus 3 kkiLiVDD~~~~---------~~~l~~~l~~~g~~v~~a~~g~------eal~~l~~--~~~dlillD~~m 56 (123)
+=|+|+|+|... .+-+..-++.+||.|..+.+|. +|++.++. .+|-+|++...+
T Consensus 175 nLi~i~D~N~iqidG~t~~~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~~~kPt~Ii~~Tii 245 (333)
T pfam00456 175 NLIAFYDDNRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLIICRTVI 245 (333)
T ss_pred CEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 78999745754217984535551099998764907999469999999999999998658998169864215
No 251
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=51.56 E-value=21 Score=17.27 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=44.6
Q ss_pred CCCEEEEEEECCCC-C--HHHHHHHHHHCCCCCCCCEEEEEECCCHHHH----HHHHHCCCCEEEE
Q ss_conf 99899995041296-9--5999999982857689959999924998999----9999769988998
Q gi|254780476|r 46 KPDVIIMDIQLQEI-S--GLEITKQIKEDSELQEIPVIAVTAFAMKGDE----ERIRKGGCEAYIS 104 (123)
Q Consensus 46 ~~dlillD~~mp~~-d--G~el~~~ir~~~~~~~ipii~~t~~~~~~~~----~~~~~~g~~~~l~ 104 (123)
.+.+=++-+.||.. . --|.++.++......++|-|.+|+.-..... .-+.++|++++|.
T Consensus 197 d~GadvlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~ 262 (306)
T COG3684 197 DSGADVLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLA 262 (306)
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 378756986233002676199999998740477898698846766777589999999738860674
No 252
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=51.40 E-value=22 Score=17.26 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=29.9
Q ss_pred HHCCCCEEEEEEE--C-CCCCH---H----HHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 8279989999504--1-29695---9----999999828576899599999249
Q gi|254780476|r 43 RQHKPDVIIMDIQ--L-QEISG---L----EITKQIKEDSELQEIPVIAVTAFA 86 (123)
Q Consensus 43 ~~~~~dlillD~~--m-p~~dG---~----el~~~ir~~~~~~~ipii~~t~~~ 86 (123)
..+.+|+|++|+- | +.-.+ . ++++.+|+...-.++|||+++-..
T Consensus 120 ~~~~~~~vvvDylql~~~~~~~~~~~~~i~~i~~~Lk~lA~e~~v~Vi~~sQln 173 (242)
T cd00984 120 KEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLS 173 (242)
T ss_pred HHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 836998999826985467776657999999999999999999799399984678
No 253
>PRK12857 putative aldolase; Reviewed
Probab=50.52 E-value=22 Score=17.18 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEE--------CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHCCCCEE
Q ss_conf 89799999998279989999504--------129695999999982857689959999924998-99999997699889
Q gi|254780476|r 33 RNGMEALELARQHKPDVIIMDIQ--------LQEISGLEITKQIKEDSELQEIPVIAVTAFAMK-GDEERIRKGGCEAY 102 (123)
Q Consensus 33 ~~g~eal~~l~~~~~dlillD~~--------mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~-~~~~~~~~~g~~~~ 102 (123)
.+.++|.+.+++...|+.-.-+. -|.. -|+.+++|++.- ++|+++.-++..+ ++..++.+.|+.-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGn~HG~yk~~p~L-~~~~L~~I~~~~---~vPLVLHGgSGi~~e~i~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPYKGVPKL-DFDRLAKIRELV---NIPLVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCC-CHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHCCEEE
T ss_conf 89999999999879787701205666776898856-999999998616---9998976899999999999998097599
No 254
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.48 E-value=22 Score=17.17 Aligned_cols=42 Identities=33% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 969599999998285768995999992499899999997699889
Q gi|254780476|r 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 58 ~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
..-..++++.+|+.. ++|++...........+++++.|..|+
T Consensus 266 ~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~a~~~l~~g~~D~ 307 (327)
T cd02803 266 EGYFLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILAEGKADL 307 (327)
T ss_pred CCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCH
T ss_conf 522389999999976---981999899899999999998899312
No 255
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=50.42 E-value=22 Score=17.17 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=59.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 789953998999999999997898999988-9799999998279989999504129695999999982857689959999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTR-NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~-~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.+++||.|+...+.+ ...|+.+.... +-.+.|+.+.-+..+.+++...=+ ..-..++..+|+.. ...+|++.
T Consensus 22 ~v~vId~d~~~~~~~----~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d-~~n~~~~~~~r~~~--~~~~iiar 94 (115)
T pfam02254 22 PVVVIDKDPERVEEL----REEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDD-EANILIVLLARELN--PAKKIIAR 94 (115)
T ss_pred CEEEEECCHHHHHHH----HHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCH-HHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 999999987998778----866986999956886678761920287999962984-99999999999978--99809999
Q ss_pred EECCCHHHHHHHHHCCCCEEE
Q ss_conf 924998999999976998899
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l 103 (123)
+ ..+.......+.|++..+
T Consensus 95 ~--~~~~~~~~l~~~Gad~vi 113 (115)
T pfam02254 95 A--NDPEHAELLRRLGADEVI 113 (115)
T ss_pred E--CCHHHHHHHHHCCCCEEE
T ss_conf 8--789999999976989997
No 256
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=50.28 E-value=22 Score=17.15 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHHHHCCCCEEEECCCCH----HHHHHHHHHHHHCC
Q ss_conf 9999976998899879898----99999999974039
Q gi|254780476|r 91 EERIRKGGCEAYISKPISL----SIFMETIKKYIGEA 123 (123)
Q Consensus 91 ~~~~~~~g~~~~l~KPi~~----~~L~~~i~~~l~~a 123 (123)
..-+..+|+++|+.-|+.+ ....+.++.+++.|
T Consensus 50 ~aaa~aAG~~Gy~H~Pv~~g~~~pd~ve~fraa~~aA 86 (136)
T TIGR01244 50 KAAAEAAGLTGYLHLPVTAGDLTPDDVETFRAALEAA 86 (136)
T ss_pred HHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999856888610054217888762689999999822
No 257
>PRK03220 consensus
Probab=50.24 E-value=22 Score=17.15 Aligned_cols=80 Identities=13% Similarity=0.239 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCC-CEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE------C
Q ss_conf 999999982799-899995041296-95--9999999828576899599999249989999999769988998------7
Q gi|254780476|r 36 MEALELARQHKP-DVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS------K 105 (123)
Q Consensus 36 ~eal~~l~~~~~-dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~------K 105 (123)
.+.++.+.+... .+++.|+.--++ .| +++++.+++.. ++|+|+--+-...++..++.+.|+++.+. +
T Consensus 162 ~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~~~---~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~ 238 (257)
T PRK03220 162 VEWAARGAELGVGEILLNSMDADGTKAGFDLEMLRAVRAAV---TVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFG 238 (257)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 99999986269888999988686602378969999999748---999899878999999999997899799874687889
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9898999999999
Q gi|254780476|r 106 PISLSIFMETIKK 118 (123)
Q Consensus 106 Pi~~~~L~~~i~~ 118 (123)
-+++.++.+.++.
T Consensus 239 ~~s~~~~k~~l~~ 251 (257)
T PRK03220 239 ELTIGQVKAALAA 251 (257)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9889999999998
No 258
>PRK08760 replicative DNA helicase; Provisional
Probab=50.19 E-value=23 Score=17.15 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=41.1
Q ss_pred HHHHHHCCCEEEEEC--CHH----HHHHHHHHCCCCEEEEEEE--C--CCCCH------HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999997898999988--979----9999998279989999504--1--29695------999999982857689959999
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGM----EALELARQHKPDVIIMDIQ--L--QEISG------LEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~----eal~~l~~~~~dlillD~~--m--p~~dG------~el~~~ir~~~~~~~ipii~~ 82 (123)
...+..+.+.+.... +.. .+..+-+.+..++|++|+- | |+... -++.+.+|....--++|||++
T Consensus 306 ~~~l~~~~l~idD~~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~~~~r~~~v~~isr~lK~lAkel~vpVi~L 385 (476)
T PRK08760 306 IKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIAL 385 (476)
T ss_pred HHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99986088168579999999999999999872799879997076415888874488999999999999999979978996
Q ss_pred EEC
Q ss_conf 924
Q gi|254780476|r 83 TAF 85 (123)
Q Consensus 83 t~~ 85 (123)
+=-
T Consensus 386 sQL 388 (476)
T PRK08760 386 SQL 388 (476)
T ss_pred CCC
T ss_conf 315
No 259
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=50.09 E-value=23 Score=17.14 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----E--EEC-----CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 999950412969599999998285768995999----9--924-----99899999997699889987989899999999
Q gi|254780476|r 49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIA----V--TAF-----AMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 49 lillD~~mp~~dG~el~~~ir~~~~~~~ipii~----~--t~~-----~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
+++=|-.|.+-.-+|.+..... ..+.++-+|+ + ++. .......+....|.+.+-..--+.+.+..+++
T Consensus 132 ~~iGDGel~EG~~wEAl~~A~~-~~L~nLi~ivD~N~~~~~g~~~~~~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~ 210 (255)
T cd02012 132 VLLGDGELQEGSVWEAASFAGH-YKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALE 210 (255)
T ss_pred EEECCCCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9942511033128999999855-587756999868982625603025476889999996698111017999999999999
Q ss_pred HH
Q ss_conf 97
Q gi|254780476|r 118 KY 119 (123)
Q Consensus 118 ~~ 119 (123)
++
T Consensus 211 ~a 212 (255)
T cd02012 211 EA 212 (255)
T ss_pred HH
T ss_conf 99
No 260
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=49.81 E-value=23 Score=17.11 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHH
Q ss_conf 999999982857689959999924998999999976998899-----------879898999999999
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKK 118 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~ 118 (123)
.++++.+|+. .+++-++|+.............|..+|+ .|| +|+.++.++++
T Consensus 99 ~e~L~~L~~~----g~~l~I~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~v~~~KP-~P~~~~~a~~~ 161 (228)
T PRK13222 99 KETLAALKAA----GYPLAVVTNKPEPFVAPLLEALGIADYFSVVIGGDSLPNKKP-DPAPLLLACEK 161 (228)
T ss_pred HHHHHHHHHC----CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHHH
T ss_conf 9999999987----996477548749999999886276533234663222477787-86999999998
No 261
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=49.80 E-value=21 Score=17.30 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHHHCCCEEEEEC--CHHHH---HHHH-HHC-CCCEEEEEEE--CCCCCH-------HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999997898999988--97999---9999-827-9989999504--129695-------999999982857689959999
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGMEA---LELA-RQH-KPDVIIMDIQ--LQEISG-------LEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~ea---l~~l-~~~-~~dlillD~~--mp~~dG-------~el~~~ir~~~~~~~ipii~~ 82 (123)
...+..+.+.+.... +..+- .+.+ +++ .+|+|++|+- |..-++ -++.+.+|....--++|||++
T Consensus 271 ~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l 350 (421)
T TIGR03600 271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL 350 (421)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99861687899669988767899999999986289869997578653788888889999999999999999979978997
Q ss_pred EECC
Q ss_conf 9249
Q gi|254780476|r 83 TAFA 86 (123)
Q Consensus 83 t~~~ 86 (123)
|=-+
T Consensus 351 sQLn 354 (421)
T TIGR03600 351 AQLN 354 (421)
T ss_pred CCCC
T ss_conf 0578
No 262
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=49.61 E-value=23 Score=17.09 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred EEEEECCCH-------HHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 789953998-------9999999999978--9899998897999999982799899995041296959999999828576
Q gi|254780476|r 4 KVMIVEDNE-------LNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 (123)
Q Consensus 4 kiLiVDD~~-------~~~~~l~~~l~~~--g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~ 74 (123)
.|||=|+.- ...+.++..-+.. ..-..++.|-+++.+.+... +|.|++|=.-|+. =-+.++.+++.
T Consensus 159 ~vLIKdNH~~~~~~~~~~~~ai~~~r~~~p~~kIeVEv~tl~~~~ea~~~g-aD~IlLDnmsp~~-l~~av~~~~~~--- 233 (284)
T PRK06096 159 TILLFANHRHFLHDNQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQ-PDVLQLDKFSPQQ-ATEIAQIAPSL--- 233 (284)
T ss_pred EEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC-CCEEEECCCCHHH-HHHHHHHHHHH---
T ss_conf 588700249887253579999999997589998899809999999998579-9999968989999-99999998721---
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 8995999992499899999997699889
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
..-.++-.||.-..+......+.|++-+
T Consensus 234 ~~~~~lEaSGGI~~~ni~~yA~tGVD~i 261 (284)
T PRK06096 234 APHCTLALTGGINLTTLKNYLDCGIRLF 261 (284)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 7977999989999999999998099999
No 263
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=49.50 E-value=19 Score=17.54 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=49.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8778995399899999999999789899--9988979999999827998999950412969599999998285
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIA--LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS 72 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v--~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~ 72 (123)
..+|--||-++...+.-++.|...|+.- ....+|..++. ...+||.|++.-..|..- -.+..+++...
T Consensus 101 ~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~--~~apfD~Iiv~aa~~~iP-~~l~~qL~~gG 170 (214)
T PRK13942 101 SGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYE--ENAPYDRIYVTAAGPDIP-KPLLEQLKDGG 170 (214)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCCCCC-HHHHHHCCCCC
T ss_conf 78579997179999999999986376875898567566784--459812799985176578-99999628895
No 264
>TIGR01334 modD modD protein; InterPro: IPR006242 The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=49.49 E-value=23 Score=17.08 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=65.9
Q ss_pred ECCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 539989999999999978--989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r 8 VEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 8 VDD~~~~~~~l~~~l~~~--g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
..|+......+.++=+.. .=-+.++++-++|+.+++.. ||++=||=--|. .+-+.....+...+.|-+.++|.
T Consensus 169 l~D~~Dw~gai~rLkq~APE~KItvEadt~~qa~~~l~a~-PDilQLdKFtpq----Q~~~~~~~l~~~~~~~tLa~aGG 243 (277)
T TIGR01334 169 LSDNEDWSGAITRLKQQAPEKKITVEADTLKQALAVLRAD-PDILQLDKFTPQ----QVKELLELLKLLDKIITLAVAGG 243 (277)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC-CCEEECCCCCHH----HHHHHHHHHHHHCCCCCEEEECC
T ss_conf 1780027899988774378772687405989999997448-976632368888----99999999997376765340078
Q ss_pred CCHHHHHHHHHCCCCEEEE
Q ss_conf 9989999999769988998
Q gi|254780476|r 86 AMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 86 ~~~~~~~~~~~~g~~~~l~ 104 (123)
-.........+.|++=|++
T Consensus 244 iN~~n~a~Y~~~Gi~lfiT 262 (277)
T TIGR01334 244 INKENVADYLELGIDLFIT 262 (277)
T ss_pred CCHHHHHHHHHCCCEEEEE
T ss_conf 7877899998625204642
No 265
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=49.22 E-value=23 Score=17.06 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC------EEEEC-CCCHHHHHHHHHHHH
Q ss_conf 99999982857689959999924998999999976998------89987-989899999999974
Q gi|254780476|r 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE------AYISK-PISLSIFMETIKKYI 120 (123)
Q Consensus 63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~------~~l~K-Pi~~~~L~~~i~~~l 120 (123)
++++++++.... ++|||.+.+-....|..+.+.+|++ +++.+ |--.+++.+-+.+++
T Consensus 229 ~~v~~l~~~~~~-~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l 292 (310)
T COG0167 229 RVVAELYKRLGG-DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWL 292 (310)
T ss_pred HHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 999999984289-9748984686969999999982975640411210208509999999999999
No 266
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=49.13 E-value=23 Score=17.05 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHH-------HHHHHCCC--CCCC-
Q ss_conf 99899999999999789899998897999999982--799899995041296959999-------99982857--6899-
Q gi|254780476|r 10 DNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEIT-------KQIKEDSE--LQEI- 77 (123)
Q Consensus 10 D~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~el~-------~~ir~~~~--~~~i- 77 (123)
.+..+..-+.++.+..|+..-.+-|...-++.+.. +..|+||+=--=||-.|-.+. |++|+.-. ....
T Consensus 90 Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TPl~~~~~~L~~~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~ 169 (216)
T TIGR01163 90 EATEHIHRLLQLIKELGAKAGIVLNPATPLEALEYVLEDVDLVLLMSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLS 169 (216)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77626799999999718970688679999878998987629899887607998841105789999999999986027995
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 599999249989999999769988998
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
..|-+=|.-......++.++|+|-++.
T Consensus 170 ~~ieVDGGv~~~ni~~~~~AGAD~~Va 196 (216)
T TIGR01163 170 ILIEVDGGVNEDNIAEVAEAGADILVA 196 (216)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 589971798976799999758989998
No 267
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=48.82 E-value=17 Score=17.78 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCE
Q ss_conf 9999999828576899599999249989999999769988
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA 101 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~ 101 (123)
-+.++.+++ ..+|||.+|++...+.+.--..+|..+
T Consensus 22 ~~~l~~L~e----~~iPvI~CtSKTAAEv~~lr~~L~L~~ 57 (224)
T TIGR02463 22 APWLTRLQE----AGIPVILCTSKTAAEVEALRKALGLTG 57 (224)
T ss_pred HHHHHHHHH----CCCCEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 999999997----589764258730789999999848898
No 268
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=48.67 E-value=24 Score=17.01 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----HHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 999999999978989999-8897999999982799899995041296959----99999982857689959999924998
Q gi|254780476|r 14 NMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGL----EITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~----el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
..+-+...-...|+++.+ +.|.+|.-..++ -...+| .++=-+...| +...++...-. ++.-+|.-||-...
T Consensus 144 ~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~-~ga~iI--GINnRdL~tf~vdl~~t~~la~~~p-~~~~~IsESGI~~~ 219 (254)
T COG0134 144 QLEELVDRAHELGMEVLVEVHNEEELERALK-LGAKII--GINNRDLTTLEVDLETTEKLAPLIP-KDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCCEE--EEECCCCCHHEECHHHHHHHHHHCC-CCCEEEECCCCCCH
T ss_conf 9999999999769923899789999999996-799889--9837884021006889999884487-77589961798999
Q ss_pred HHHHHHHHCCCCEEEEC
Q ss_conf 99999997699889987
Q gi|254780476|r 89 GDEERIRKGGCEAYISK 105 (123)
Q Consensus 89 ~~~~~~~~~g~~~~l~K 105 (123)
.+.....+.|+++||.=
T Consensus 220 ~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 220 EDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999997489989963
No 269
>PRK08082 consensus
Probab=48.63 E-value=24 Score=17.00 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=38.8
Q ss_pred HHHHHCCCEEEEECC--HHH----HHHHHHHCCCCEEEEEEE--C--CCCCH-------HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999978989999889--799----999998279989999504--1--29695-------999999982857689959999
Q gi|254780476|r 20 DLIETSGYIALQTRN--GME----ALELARQHKPDVIIMDIQ--L--QEISG-------LEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 20 ~~l~~~g~~v~~a~~--g~e----al~~l~~~~~dlillD~~--m--p~~dG-------~el~~~ir~~~~~~~ipii~~ 82 (123)
..+..+++.+....+ -.+ +..+-+.+..++|++|+- | ++..+ -++.+.+|....--++|||++
T Consensus 281 ~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~livIDYlqLi~~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~l 360 (453)
T PRK08082 281 GSLSNAGIYIDDTPGIRVNEIRAKCRRLKQEQGLGMILIDYLQLIQGSGRSGENRQQEVSEISRTLKALARELEVPVIAL 360 (453)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 98506973897899998999999999999866998899950773377898887899999999999999999969979996
Q ss_pred EECC
Q ss_conf 9249
Q gi|254780476|r 83 TAFA 86 (123)
Q Consensus 83 t~~~ 86 (123)
|=-+
T Consensus 361 sQLn 364 (453)
T PRK08082 361 SQLS 364 (453)
T ss_pred CCCC
T ss_conf 4478
No 270
>PRK11059 regulatory protein CsrD; Provisional
Probab=48.42 E-value=24 Score=16.98 Aligned_cols=98 Identities=10% Similarity=0.124 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEEEECC-CC----CHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99899999999999789899--9988979999999827998999950412-96----95999999982857689959999
Q gi|254780476|r 10 DNELNMKLFRDLIETSGYIA--LQTRNGMEALELARQHKPDVIIMDIQLQ-EI----SGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 10 D~~~~~~~l~~~l~~~g~~v--~~a~~g~eal~~l~~~~~dlillD~~mp-~~----dG~el~~~ir~~~~~~~ipii~~ 82 (123)
+|......+.+.|...|+.+ ..+..|-..+..+++-++|.+=+|-.+= ++ +-..+++.|-.......+.||+
T Consensus 532 ~~~~~~~~~l~~L~~lG~~~aiDdFG~g~sSl~YLk~lpvd~LKID~SfVr~I~~~~enq~~V~sIi~~a~~l~~~VIA- 610 (642)
T PRK11059 532 QHIDRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHQRTENQLFVRSLVGACAGTETQVFA- 610 (642)
T ss_pred HCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-
T ss_conf 4899999999999976987999899997666899963999999988888637126931079999999999867997999-
Q ss_pred EECCCHHHHHHHHHCCCCE----EEECCCC
Q ss_conf 9249989999999769988----9987989
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEA----YISKPIS 108 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~----~l~KPi~ 108 (123)
.+-...+..+...+.|+++ |+.||..
T Consensus 611 EGVEt~~q~~~L~~lGvd~~QGy~f~~P~P 640 (642)
T PRK11059 611 EGVESREEWQTLQILGVSGGQGDFFASPQP 640 (642)
T ss_pred EECCCHHHHHHHHHCCCCEEECCEECCCCC
T ss_conf 623869999999980998322473178889
No 271
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=48.25 E-value=24 Score=16.97 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999999978989------999889799---999998279989999504129695---999999982857689959999
Q gi|254780476|r 15 MKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 15 ~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~~ 82 (123)
++.+.++++..|.. +..-+-|+. |+..+--..|+++++|=-+...|- .++...|++......+|+|++
T Consensus 106 ~~~~~~~~~~l~l~~l~~r~p~~LSGGq~QRvaiARAL~~~P~lLllDEP~s~LD~~~~~~i~~~l~~l~~~~~~til~V 185 (352)
T PRK11144 106 PAQFDKIVSLLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAQEINIPILYV 185 (352)
T ss_pred HHHHHHHHHHCCCHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999775995676278646592452349999987249999998784002797799999999999999739889999
Q ss_pred EEC
Q ss_conf 924
Q gi|254780476|r 83 TAF 85 (123)
Q Consensus 83 t~~ 85 (123)
|-.
T Consensus 186 THd 188 (352)
T PRK11144 186 SHS 188 (352)
T ss_pred ECC
T ss_conf 399
No 272
>PRK13117 consensus
Probab=47.74 E-value=25 Score=16.92 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=33.5
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEE--EE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHH---------HHHHHHHHCCC
Q ss_conf 9953998999999999997898999--98-897999999982799899995041296959---------99999982857
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIAL--QT-RNGMEALELARQHKPDVIIMDIQLQEISGL---------EITKQIKEDSE 73 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~--~a-~~g~eal~~l~~~~~dlillD~~mp~~dG~---------el~~~ir~~~~ 73 (123)
+++|=-....+-+...+...|.... .+ .+..+=++.+.+....+|-+ ...++.+|- +++++||+
T Consensus 127 IipDLP~eE~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~-vs~~GvTG~~~~~~~~~~~~i~~ik~--- 202 (268)
T PRK13117 127 LIADVPVEESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGRGYTYL-LSRAGVTGAENKAAAPLNHLVEKLKE--- 202 (268)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE-EECCCCCCCCCCCCHHHHHHHHHHHH---
T ss_conf 85799978858999999867983799847999999999999747985999-83677788986662779999999996---
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 689959999924998999999976998899
Q gi|254780476|r 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 74 ~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
..++|+.+=-|-..+++..+..+.++++.+
T Consensus 203 ~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvI 232 (268)
T PRK13117 203 YNAPPPLQGFGISEPEQVKAAIKAGAAGAI 232 (268)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 479986998378999999999863899899
No 273
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.62 E-value=25 Score=16.91 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=67.8
Q ss_pred CEEEE--ECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 77899--53998---99999999999789899998-------89799999998279989999504129695999999982
Q gi|254780476|r 3 KKVMI--VEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 3 kkiLi--VDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
||+-+ .+|+. ...+.+++.++..|.++... .+-..-+..+++..||+|++-.. .-++..++++.|+
T Consensus 137 k~vav~~~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~~--~~~~~~~~~q~~~ 214 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISAL--AADGGNLVRQLRE 214 (344)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHH
T ss_conf 88999994897589999999999998769858998716898601789999987519999999457--4259999999997
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHH
Q ss_conf 857689959999924998999999976998899879898-------999999999740
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL-------SIFMETIKKYIG 121 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~-------~~L~~~i~~~l~ 121 (123)
.. -+.|++.-++..........-+..-.-+..-|+.+ ..|.+..++..|
T Consensus 215 ~G--~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~F~~~y~~~~g 270 (344)
T cd06348 215 LG--YNGLIVGGNGFNTPNVFPVCQAACDGVLVAQAYSPENDTPVNRDFVEAYKKKYG 270 (344)
T ss_pred CC--CCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 69--997099866778789998678985987999716876787789999999999868
No 274
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=47.33 E-value=25 Score=16.88 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=47.8
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 9999889799999998279989999504129695999999982857689959999924998999999976998899
Q gi|254780476|r 28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 28 ~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
-..++.|-+|+.+.+.. .+|.|++|=.-|+ +=-+..+.+++. ..-..+-.||.-......+..+.|++.+.
T Consensus 186 IeVEv~~~~q~~~a~~~-g~d~I~LDn~s~~-~ik~~v~~~~~~---~~~v~ieaSGgI~~~ni~~yA~tGvD~Is 256 (272)
T cd01573 186 IVVEVDSLEEALAAAEA-GADILQLDKFSPE-ELAELVPKLRSL---APPVLLAAAGGINIENAAAYAAAGADILV 256 (272)
T ss_pred EEEEECCHHHHHHHHHC-CCCEEEECCCCHH-HHHHHHHHHHCC---CCCEEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 89983999999999846-9999997799999-999999997444---88769999899999999999973999998
No 275
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.29 E-value=25 Score=16.88 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=42.1
Q ss_pred CCCCEEEEEEECCC-CC---HH----------HHHHHHHHCCCCCCCCEEEEEECCCHHHHH----HHHHCCC--CEEEE
Q ss_conf 79989999504129-69---59----------999999828576899599999249989999----9997699--88998
Q gi|254780476|r 45 HKPDVIIMDIQLQE-IS---GL----------EITKQIKEDSELQEIPVIAVTAFAMKGDEE----RIRKGGC--EAYIS 104 (123)
Q Consensus 45 ~~~dlillD~~mp~-~d---G~----------el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~~~~~g~--~~~l~ 104 (123)
..|.+=++-+.+|. ++ |+ +.++..++.....++|-|++|+.-....-. -+.++|+ ++||-
T Consensus 198 ~~ygvDvlKvE~Pvn~~~veg~~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGa~fsG~L~ 277 (340)
T PRK12858 198 PRYGVDVLKVEVPVDMKFVEGRDGFAAAYTQEEAFKLFREQSDATPLPFIFLSAGVTPELFLRELEFAKQAGADFNGVLC 277 (340)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 66698679962666612022456753213599999999999735499979981899989999999999985997235534
No 276
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=47.25 E-value=25 Score=16.88 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCEEEE-----EEECCCCCHH-HHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 799999998279989999-----5041296959-999999828576899599999249989999
Q gi|254780476|r 35 GMEALELARQHKPDVIIM-----DIQLQEISGL-EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 (123)
Q Consensus 35 g~eal~~l~~~~~dlill-----D~~mp~~dG~-el~~~ir~~~~~~~ipii~~t~~~~~~~~~ 92 (123)
-.++++.+.++.+|+|++ |-.=|...-. .+.+.+|.... ..+||+++.|........
T Consensus 29 f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~-~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 29 FDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKD-AGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCC
T ss_conf 999999999706999998155578899998999999999998754-698289972789860126
No 277
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=47.20 E-value=25 Score=16.87 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=36.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEE--EECCCCCHHHHHH
Q ss_conf 77899539989999999999978989-99-98897999999982799899995--0412969599999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYI-AL-QTRNGMEALELARQHKPDVIIMD--IQLQEISGLEITK 66 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~-v~-~a~~g~eal~~l~~~~~dlillD--~~mp~~dG~el~~ 66 (123)
.+|..+|-|+...+..++.++..+.+ +. ..++..+ -+....||+|+.. +.-....++++.+
T Consensus 56 ~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~---~~~~~~fD~IvsNPP~h~g~~~~~~~~~ 120 (170)
T pfam05175 56 LEVTMVDINARALESARANLAANGLENGEVFWSDLYS---AVEPGKFDLIISNPPFHAGKATDYDVAQ 120 (170)
T ss_pred CEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 6798515449999999999998099848999744666---5778866089989772114203289999
No 278
>PRK13224 consensus
Probab=46.89 E-value=25 Score=16.84 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=56.6
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEECC--------HHHHHHHHHH-----------------CCCCEEEEEEECCCCCH
Q ss_conf 9539989999999999978989999889--------7999999982-----------------79989999504129695
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQTRN--------GMEALELARQ-----------------HKPDVIIMDIQLQEISG 61 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~a~~--------g~eal~~l~~-----------------~~~dlillD~~mp~~dG 61 (123)
+||..+.....+.+.+...|+....... ....++.+.. +.+.-.... ...-..|
T Consensus 12 LvDS~~~~~~a~~~~l~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~pG 90 (216)
T PRK13224 12 LVDSAPDIHAAVNAALAEEGAAPLTLAEVTGFVGNGVPVLVQRVIAARGLAPDAHRELQARFMAHYEADATA-LTRVYPG 90 (216)
T ss_pred HHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCC
T ss_conf 675999999999999998799999999999996588899999998754999689999999999999974023-4872837
Q ss_pred -HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHH
Q ss_conf -999999982857689959999924998999999976998899-----------879898999999999
Q gi|254780476|r 62 -LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKK 118 (123)
Q Consensus 62 -~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~ 118 (123)
.++++.+|+. .+|+-++|++............|..+|+ .|| +|+-++.++++
T Consensus 91 ~~e~L~~L~~~----g~~laivTn~~~~~~~~~L~~~gl~~~Fd~iv~~d~v~~~KP-~Pe~~l~a~~~ 154 (216)
T PRK13224 91 VEAALRHLKAE----GWRLGLCTNKPVGPTRAILAHFGLAELFDVVIGGDSLPQRKP-DPAPLRAAFAA 154 (216)
T ss_pred HHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHCCCHHHCCEEECCCCCCCCCC-CHHHHHHHHHH
T ss_conf 99999999977----996687608934778889987394432474654466899999-99999999973
No 279
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=46.80 E-value=26 Score=16.83 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=49.6
Q ss_pred EEEEECCCH-----HHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 789953998-----9999999999978989999-8897999999982799899995041296959999999828576899
Q gi|254780476|r 4 KVMIVEDNE-----LNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 4 kiLiVDD~~-----~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
||++|=++- .....+++.+...++.... ..+-.+. .....+|+|+....++ ....+.
T Consensus 1 ~ilvvC~~G~~tS~ll~~~l~~~~~~~~~~~~v~~~~~~~~---~~~~~~DlIist~~l~--------------~~~~~~ 63 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPLA--------------ARFLGK 63 (84)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHC---CCCCCCCEEEEEECCC--------------CCCCCC
T ss_conf 99999999889999999999999886882899986123314---1435988899900247--------------544799
Q ss_pred CEEEEEECCCHHHHHHHHH
Q ss_conf 5999992499899999997
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRK 96 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~ 96 (123)
|++.++......+..+..+
T Consensus 64 p~i~v~~~~~~~d~~~i~~ 82 (84)
T cd00133 64 PVIVVSPLLNEKDGEKILE 82 (84)
T ss_pred CEEEEECCCCHHHHHHHHH
T ss_conf 8899977999899999995
No 280
>PRK08694 consensus
Probab=46.74 E-value=26 Score=16.83 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHCCCEEEEEC--CHHH----HHHHHHHC--CCCEEEEEEE--CC--CCCH------HHHHHHHHHCCCCCCCCEE
Q ss_conf 999997898999988--9799----99999827--9989999504--12--9695------9999999828576899599
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGME----ALELARQH--KPDVIIMDIQ--LQ--EISG------LEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~e----al~~l~~~--~~dlillD~~--mp--~~dG------~el~~~ir~~~~~~~ipii 80 (123)
..-+..+.+.+.... +-.+ +.++.+++ ++++|++|+- |+ +..+ -++.+.+|....--++|||
T Consensus 295 ~~~l~~~pl~idd~~~~t~~~i~a~~r~~~~~~~~kl~~vvIDYLqLi~~~~~~~~r~~~i~~isr~LK~lAkel~ipvi 374 (468)
T PRK08694 295 VVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPII 374 (468)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99986299689769999887999999999998389873899736754168887655999999999999999999799899
Q ss_pred EEEECC
Q ss_conf 999249
Q gi|254780476|r 81 AVTAFA 86 (123)
Q Consensus 81 ~~t~~~ 86 (123)
++|=-+
T Consensus 375 ~LsQLn 380 (468)
T PRK08694 375 ALSQLS 380 (468)
T ss_pred EECCCC
T ss_conf 963268
No 281
>PRK06953 short chain dehydrogenase; Provisional
Probab=46.68 E-value=26 Score=16.82 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHCCCCCCCCEE
Q ss_conf 8778995399899999999999789899998897999999982799899995041296959-999999828576899599
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL-EITKQIKEDSELQEIPVI 80 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~-el~~~ir~~~~~~~ipii 80 (123)
||.+||.=-+.=.=..+.+.|...|+.|..+..-.++++.++....+.+-+|+.=+. .+ .+..++. ...+.++
T Consensus 1 MK~~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~--~v~~~~~~~~----~~~ldil 74 (222)
T PRK06953 1 MKTVLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAALRALGAEALALDVADPE--SIAGLGWKLD----GEALDAA 74 (222)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCHH--HHHHHHHHHC----CCCCCEE
T ss_conf 999999475729999999999988899999968888899988421517774058999--9999998623----6776789
Q ss_pred EEEE
Q ss_conf 9992
Q gi|254780476|r 81 AVTA 84 (123)
Q Consensus 81 ~~t~ 84 (123)
+.-+
T Consensus 75 i~nA 78 (222)
T PRK06953 75 VYVA 78 (222)
T ss_pred EEEC
T ss_conf 9816
No 282
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=46.66 E-value=26 Score=16.82 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=66.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH------HHCCCCEEEE------EEECCC----------CCH
Q ss_conf 789953998999999999997898999988979999999------8279989999------504129----------695
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA------RQHKPDVIIM------DIQLQE----------ISG 61 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l------~~~~~dlill------D~~mp~----------~dG 61 (123)
||||.-=-.-..+=|.++|..+|..|.=-.|.-++++.. +...|||++= .+.||+ +-|
T Consensus 449 RvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEG 528 (667)
T TIGR00631 449 RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG 528 (667)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCC
T ss_conf 48998201677889999970588379871455789999999998447884088600020024651148899763278889
Q ss_pred H-----HHHHHHHHCCCCCCCCEEEEEECCCHHHHH--------HHHH---CCCCEEEECCCCH
Q ss_conf 9-----999999828576899599999249989999--------9997---6998899879898
Q gi|254780476|r 62 L-----EITKQIKEDSELQEIPVIAVTAFAMKGDEE--------RIRK---GGCEAYISKPISL 109 (123)
Q Consensus 62 ~-----el~~~ir~~~~~~~ipii~~t~~~~~~~~~--------~~~~---~g~~~~l~KPi~~ 109 (123)
| .|.|.|-...+..+=.|||.-..-+..... +..+ .-.+++..||++.
T Consensus 529 FLRSerSLIQTIGRAARN~~G~VilYAD~iT~sM~~AI~ET~RRR~~Q~~YNe~HgItP~ti~K 592 (667)
T TIGR00631 529 FLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIEETERRRKIQIAYNEEHGITPQTIRK 592 (667)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 9866302788988875257965999728700789999998788899999999753897885405
No 283
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=46.63 E-value=26 Score=16.82 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=52.3
Q ss_pred CCEEEEECCCH----HHHHHHHHHHHHCCCEEEEE---C----CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 87789953998----99999999999789899998---8----9799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQT---R----NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~a---~----~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.||+-++.+|- ...+.++..++..|.++... . +-..-+..+++..||+|++- ..+-++..++++.|+
T Consensus 134 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~kik~a~pD~v~~~--~~~~~~~~~~kq~~~ 211 (359)
T TIGR03407 134 AKRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNT--LNGDSNVAFFKQLKN 211 (359)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHH
T ss_conf 987999945873058999999999997599737788257987558999999997699999993--746205799999998
Q ss_pred CCCC-CCCCEEEE
Q ss_conf 8576-89959999
Q gi|254780476|r 71 DSEL-QEIPVIAV 82 (123)
Q Consensus 71 ~~~~-~~ipii~~ 82 (123)
..-. +.+|+...
T Consensus 212 ~G~~~~~~~~~~~ 224 (359)
T TIGR03407 212 AGITAKDVPVVSF 224 (359)
T ss_pred HCCCCCCCEEEEE
T ss_conf 2899767758985
No 284
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=46.45 E-value=25 Score=16.90 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=48.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CC-CCCH---HHHHHHHHHCCCCCC
Q ss_conf 877899539989999999999978989999889799999998279989999504-12-9695---999999982857689
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-LQ-EISG---LEITKQIKEDSELQE 76 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-mp-~~dG---~el~~~ir~~~~~~~ 76 (123)
+++|||+|-.......+.+.+...|+...+.-.-....+.++...||.+++--. |. ..++ -.....|+... ...
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~-~p~ 79 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAG-VPG 79 (198)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHC-CCC
T ss_conf 9579999579707679999998739826999857888011566688889985898877644333055789999718-888
Q ss_pred CCEEEEE
Q ss_conf 9599999
Q gi|254780476|r 77 IPVIAVT 83 (123)
Q Consensus 77 ipii~~t 83 (123)
.||+.+-
T Consensus 80 ~pvLGIC 86 (198)
T COG0518 80 KPVLGIC 86 (198)
T ss_pred CCEEEEC
T ss_conf 8789987
No 285
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.28 E-value=26 Score=16.79 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99998279989999504129695999999982857689959999924998999999976998899879898999999999
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
++.+..-+||+|+.... .+.-+...++++. .+|++++......+..+.....|- .+.|+=..+++.+.+++
T Consensus 50 ~E~I~~L~PDLVi~~~~---~~~~~~~~~l~~~----gi~v~~~~~~~~~~~~~~i~~lg~--i~g~~~~A~~~i~~~~~ 120 (245)
T cd01144 50 LERVLALKPDLVIAWDD---CNVCAVVDQLRAA----GIPVLVSEPQTLDDILADIRRLGT--LAGRPARAEELAEALRR 120 (245)
T ss_pred HHHHHCCCCCEEEEECC---CCHHHHHHHHHCC----CCEEEEECCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_conf 99995259964774268---7768899987604----976998489999999999999998--74974689999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780476|r 119 YI 120 (123)
Q Consensus 119 ~l 120 (123)
.+
T Consensus 121 ~l 122 (245)
T cd01144 121 RL 122 (245)
T ss_pred HH
T ss_conf 99
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=46.12 E-value=26 Score=16.77 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=10.1
Q ss_pred CCCCEEEECCCCHHHHHHHHHH
Q ss_conf 6998899879898999999999
Q gi|254780476|r 97 GGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 97 ~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
+|+.-++.. ++++|...+.+
T Consensus 250 l~vp~~vv~--~~~~l~~~l~~ 269 (282)
T TIGR03499 250 LGVPVKVAR--DPKELAKALER 269 (282)
T ss_pred HCCEEEEEC--CHHHHHHHHHH
T ss_conf 597489939--99999999986
No 287
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=46.12 E-value=26 Score=16.77 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|.-+++.+- ..+|||. |.... ..+..+.|.++|+.+|-+++.|.++|.+++.+
T Consensus 277 g~~~lEAma-----~G~PvIa-s~~gg---~~e~i~~g~~G~lv~~~d~~~la~ai~~ll~d 329 (359)
T cd03823 277 PLVIREALA-----AGVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred CHHHHHHHH-----CCCCEEE-CCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 479999998-----2998998-88998---17560379867998999999999999999849
No 288
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=46.04 E-value=26 Score=16.77 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=50.6
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCC--EEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7789953998----999999999997898--99998-------8979999999827998999950412969599999998
Q gi|254780476|r 3 KKVMIVEDNE----LNMKLFRDLIETSGY--IALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK 69 (123)
Q Consensus 3 kkiLiVDD~~----~~~~~l~~~l~~~g~--~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir 69 (123)
|||.++.+|. ...+.++..++..|. ++... .+-..-+..+++..||+|++-. -..+...++++.+
T Consensus 139 k~vaii~~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~~~~pd~v~~~~--~~~~~~~~~~q~~ 216 (346)
T cd06330 139 KTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSL--WGGDLVTFVRQAN 216 (346)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHH
T ss_conf 08999938956779999999999986178965888882589986469999999967999999906--6457999999999
Q ss_pred HCCCCCCCCEEEEE
Q ss_conf 28576899599999
Q gi|254780476|r 70 EDSELQEIPVIAVT 83 (123)
Q Consensus 70 ~~~~~~~ipii~~t 83 (123)
+..-....+++...
T Consensus 217 ~~G~~~~~~~~~~~ 230 (346)
T cd06330 217 ARGLFDGTTVVLTL 230 (346)
T ss_pred HCCCCCCCEEEEEC
T ss_conf 74987797499965
No 289
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=45.76 E-value=27 Score=16.74 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=55.0
Q ss_pred HHHHHHHHHH--CCCCEEEEEEE------CCC--CCHH-HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 7999999982--79989999504------129--6959-99999982857689959999924998999999976998899
Q gi|254780476|r 35 GMEALELARQ--HKPDVIIMDIQ------LQE--ISGL-EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 35 g~eal~~l~~--~~~dlillD~~------mp~--~dG~-el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
-.++++...+ -.|=+|++|-. |.+ ..|+ |=..++|+.. +.-||+||-+--....=+.|+|+|+|+
T Consensus 414 lD~av~qVa~~GgTPLvVc~dn~iyGVIyLKDiVK~Gi~ERF~qLR~~G----ikTiM~TGDNrlTAa~IA~EAGVDdFi 489 (675)
T TIGR01497 414 LDEAVDQVAKQGGTPLVVCVDNKIYGVIYLKDIVKSGIKERFEQLRKMG----IKTIMLTGDNRLTAAVIAKEAGVDDFI 489 (675)
T ss_pred HHHHHHHHHHCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf 6788999873289847999757789889873013786045788872258----668997289757899999762888520
Q ss_pred ECCCCHHHHHHHHHHH
Q ss_conf 8798989999999997
Q gi|254780476|r 104 SKPISLSIFMETIKKY 119 (123)
Q Consensus 104 ~KPi~~~~L~~~i~~~ 119 (123)
.- .+||.=++.|+|.
T Consensus 490 AE-a~PEdKi~~I~~e 504 (675)
T TIGR01497 490 AE-ATPEDKIEVIKKE 504 (675)
T ss_pred CC-CCCHHHHHHHHHH
T ss_conf 15-8836789999875
No 290
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=45.61 E-value=27 Score=16.73 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=35.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--CCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 77899539989999999999978--9899998897-------99999998279989999504129695999999982
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETS--GYIALQTRNG-------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~--g~~v~~a~~g-------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.||-++=.++...+.....++.. |..+....+| ++-++.+.+..||+|++-+.+|.= -.++.++++
T Consensus 49 ~~v~llG~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~div~vglG~PkQ--E~~~~~~~~ 123 (172)
T pfam03808 49 KRVFLLGGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDLLFVGLGAPKQ--EKWIARNRA 123 (172)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHH
T ss_conf 838998088899999999999887995599987999986899999999984599999995698177--999999998
No 291
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.59 E-value=27 Score=16.72 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC---HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 99997898999988979999999827998999950412969---5999999982857689959999924998
Q gi|254780476|r 20 DLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS---GLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 20 ~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~d---G~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
.+|..........+-..-|+..+--..|++.+||--+.-.| --|++..+.......++||+-+|-+..+
T Consensus 120 hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 120 HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 678508775676155677788887549773430684032365104677899999876218878999368999
No 292
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.15 E-value=27 Score=16.68 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=36.0
Q ss_pred CHHHHHHH---HHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 98999999---99999789899998897------9999999827998999950412969599999998285768995999
Q gi|254780476|r 11 NELNMKLF---RDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 11 ~~~~~~~l---~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|+...+++ .+.++..||.+..+.++ .++++.+.++.+|-+++- |...--+..+.+++ .++|+|+
T Consensus 11 n~ff~~~~~~ie~~~~~~Gy~~~i~~s~~d~~~e~~~i~~l~~~~vdGiIi~---~~~~~~~~~~~l~~----~~iP~V~ 83 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALI---GLDHSPALLDLLAR----RGVPYVA 83 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHHH----CCCCEEE
T ss_conf 9899999999999999859999999589998999999999996599999991---89999899999997----5998999
Q ss_pred E
Q ss_conf 9
Q gi|254780476|r 82 V 82 (123)
Q Consensus 82 ~ 82 (123)
+
T Consensus 84 ~ 84 (268)
T cd06273 84 T 84 (268)
T ss_pred E
T ss_conf 8
No 293
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=45.13 E-value=27 Score=16.68 Aligned_cols=95 Identities=8% Similarity=-0.028 Sum_probs=67.1
Q ss_pred HHHHHHHCCCEEEEECCHH--HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 9999997898999988979--99999982799899995041296959999999828576899599999249989999999
Q gi|254780476|r 18 FRDLIETSGYIALQTRNGM--EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 (123)
Q Consensus 18 l~~~l~~~g~~v~~a~~g~--eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~ 95 (123)
++.-|..-.-++-.-.+-. =..+.+...-||.+++|.+=-..|.-.++.+++........|||=.. ........+.+
T Consensus 8 fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ikq~L 86 (255)
T COG3836 8 FKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIKQLL 86 (255)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECC-CCCHHHHHHHH
T ss_conf 99998579966875215885799999985688879962532676589999999875325999866488-89889999996
Q ss_pred HCCCCEEEECCCC-HHHHH
Q ss_conf 7699889987989-89999
Q gi|254780476|r 96 KGGCEAYISKPIS-LSIFM 113 (123)
Q Consensus 96 ~~g~~~~l~KPi~-~~~L~ 113 (123)
+.|+...|.-=++ .++-.
T Consensus 87 D~GAqtlliPmV~s~eqAr 105 (255)
T COG3836 87 DIGAQTLLIPMVDTAEQAR 105 (255)
T ss_pred CCCCCEEEEECCCCHHHHH
T ss_conf 2163136640358999999
No 294
>PTZ00089 transketolase; Provisional
Probab=45.13 E-value=27 Score=16.68 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=44.8
Q ss_pred CEEEEECCCH---------HHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHH--CCCCEEEEEEEC----CCCC
Q ss_conf 7789953998---------999999999997898999988979-------99999982--799899995041----2969
Q gi|254780476|r 3 KKVMIVEDNE---------LNMKLFRDLIETSGYIALQTRNGM-------EALELARQ--HKPDVIIMDIQL----QEIS 60 (123)
Q Consensus 3 kkiLiVDD~~---------~~~~~l~~~l~~~g~~v~~a~~g~-------eal~~l~~--~~~dlillD~~m----p~~d 60 (123)
+=|+++|+|. ...+-+..-++..||.|..+.+|. +|++..+. .+|-+|+....+ |..+
T Consensus 179 nLi~i~D~N~i~idg~~~~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak~~~~kPtlI~~~T~iG~Gs~~eG 258 (670)
T PTZ00089 179 RLILLYDDNKITIDGNTDLSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAKKNLKQPSLIIVQTACGFGTKVEG 258 (670)
T ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
T ss_conf 88999917721146885436566599999980771343366777999999999999855899848996422246557678
Q ss_pred ---------HHHHHHHHHHCCCC
Q ss_conf ---------59999999828576
Q gi|254780476|r 61 ---------GLEITKQIKEDSEL 74 (123)
Q Consensus 61 ---------G~el~~~ir~~~~~ 74 (123)
|-|-++..|+...+
T Consensus 259 t~~~HG~pLg~eei~~~K~~lG~ 281 (670)
T PTZ00089 259 TCKSHGLALKDEDLKKAKEFFGL 281 (670)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 75535887776999999997399
No 295
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=45.02 E-value=27 Score=16.67 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCC-EEE----EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHCCCCC
Q ss_conf 87789953998999999999997898-999----9889799999998279989999504129695999999-98285768
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGY-IAL----QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ-IKEDSELQ 75 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~-~v~----~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~-ir~~~~~~ 75 (123)
.++|+-+||-..... .|+ ++. ...+-.++++.+.++.||+|+++ ++...+.++. ++. ....
T Consensus 108 ~~~i~tiEdPvE~~~--------~~~~Q~~v~~~~g~~~~~~lr~~LR~dPDvi~ig----EiRD~eta~~a~~a-a~tG 174 (264)
T cd01129 108 EKNIITVEDPVEYQI--------PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVG----EIRDAETAEIAVQA-ALTG 174 (264)
T ss_pred CCEEEEEECCCCCCC--------CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEC----CCCCHHHHHHHHHH-HHHC
T ss_conf 850899867631456--------8873576166668789999999855699988746----88999999999999-9709
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 995999992499899999997699889
Q gi|254780476|r 76 EIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 76 ~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+.=+--+.+.+..+...+..++|++.+
T Consensus 175 hlV~tTlHa~~a~~~i~RL~~lgv~~~ 201 (264)
T cd01129 175 HLVLSTLHTNDAPGAITRLLDMGIESY 201 (264)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCHH
T ss_conf 969999703999999999998299989
No 296
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.95 E-value=27 Score=16.67 Aligned_cols=61 Identities=16% Similarity=0.328 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999999999789899998897------99999998279989999504129695999999982857689959999
Q gi|254780476|r 15 MKLFRDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.+.+...+...||.+..+.++ .+.++.+.++.+|-+++- |....-+..+.+++ ..+|+|.+
T Consensus 18 ~~~i~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi~---~~~~~~~~~~~l~~----~~iPvV~~ 84 (265)
T cd06285 18 YEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILG---DARSDDHFLDELTR----RGVPFVLV 84 (265)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHHH----CCCCEEEE
T ss_conf 999999999869989999799998999999999995699999976---88799899999996----79978998
No 297
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=44.69 E-value=28 Score=16.64 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 89959999924998999999976998899879898999999999740
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
..+|+|.- .... ..+....|.++|+..|-+++.|.+++.+++.
T Consensus 287 ~G~PvV~s-~~gg---~~eii~~~~~G~l~~~~d~~~l~~~i~~~l~ 329 (355)
T cd03819 287 MGRPVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CCCCEEEE-CCCC---CHHHCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 69989990-8999---4766158997899889999999999999986
No 298
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=44.64 E-value=23 Score=17.08 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=48.8
Q ss_pred CEEEE-ECC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC--CCHHHHHHHHHHCCCCCCCC
Q ss_conf 77899-539-989999999999978989999889799999998279989999504129--69599999998285768995
Q gi|254780476|r 3 KKVMI-VED-NELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE--ISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 3 kkiLi-VDD-~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~--~dG~el~~~ir~~~~~~~ip 78 (123)
|.||+ |.| +....--+.+.|...||.+.....-.+.| +++-..+-.+.+.-.+ -+--.+...|++ ..+-
T Consensus 1 KnVliSv~d~dK~~~l~~a~~l~~lGf~l~AT~GTa~~l---~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~----g~i~ 73 (116)
T cd01423 1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFL---LENGIPVTPVAWPSEEPQNDKPSLRELLAE----GKID 73 (116)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH---HHCCCCCEEEEEECCCCCCCCCCHHHHHHC----CCEE
T ss_conf 929999402038999999999998799999841899999---986996579878624678999669999976----9868
Q ss_pred EEEEEECC--------CHHHHHHHHHCCCC
Q ss_conf 99999249--------98999999976998
Q gi|254780476|r 79 VIAVTAFA--------MKGDEERIRKGGCE 100 (123)
Q Consensus 79 ii~~t~~~--------~~~~~~~~~~~g~~ 100 (123)
.|+-|... ....+..+.+.|+-
T Consensus 74 lVINtp~~~~~~~~~~g~~iRr~Av~~~Ip 103 (116)
T cd01423 74 LVINLPSNRGKRVLDNDYVMRRAADDFAVP 103 (116)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 999888999864335458999999975999
No 299
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=44.62 E-value=22 Score=17.16 Aligned_cols=70 Identities=31% Similarity=0.434 Sum_probs=43.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 8995399899999999999789-899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g-~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
|=|.|||..-|-. +.+...-+ |+.....+ +--++.+..-+||+|+-|..= --.+..+++... |.|++-
T Consensus 71 VGIADDnk~krI~-k~Vr~ki~~ytSVGTRs-QPslE~Is~LKPDLIIAD~sR----Hk~vy~eLkKIA-----PTi~Lk 139 (310)
T COG4594 71 VGIADDNKKKRIL-KDVRDKIDPYTSVGTRS-QPSLEAISALKPDLIIADSSR----HKKVYKELKKIA-----PTIALK 139 (310)
T ss_pred EEECCCCHHHHHH-HHHHHHCCCCCCCCCCC-CCCHHHHHCCCCCEEEECCHH----HHHHHHHHHHHC-----CEEEEC
T ss_conf 3311686165656-99985347742446778-987788860598769823045----677999997426-----546750
Q ss_pred EC
Q ss_conf 24
Q gi|254780476|r 84 AF 85 (123)
Q Consensus 84 ~~ 85 (123)
+.
T Consensus 140 S~ 141 (310)
T COG4594 140 SR 141 (310)
T ss_pred CC
T ss_conf 46
No 300
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=44.44 E-value=28 Score=16.62 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=46.1
Q ss_pred EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC----CCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 988979999999827998999950412969599999998285----768995999992499899999997699889
Q gi|254780476|r 31 QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 31 ~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~----~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
.+.+-.++++.+....+|.|.+|-.-| .++-.....+|... ...+-..|..|+.-.........+.|++.|
T Consensus 190 e~~~~~~~~~~~~~~~~~~IrlD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~SGgi~~~~i~~~a~~gvd~i 264 (281)
T cd00516 190 EVDTLEEALEAAKAGGADGIRLDSGSP-EELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVF 264 (281)
T ss_pred EECCHHHHHHHHHCCCCCEEEECCCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 978899999999549999999797995-889999999999987632578977999979999999999996798999
No 301
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=44.28 E-value=28 Score=16.61 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=59.4
Q ss_pred HHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHH----HHHHHHHHCCCC---CCCCEEEEEECCCHH
Q ss_conf 99999789899998897999999982--799899995041296959----999999828576---899599999249989
Q gi|254780476|r 19 RDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGL----EITKQIKEDSEL---QEIPVIAVTAFAMKG 89 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~----el~~~ir~~~~~---~~ipii~~t~~~~~~ 89 (123)
-...++.|...-.+-+...-++.+.. ...|+|++=..=|+-.|- +.+.+||+.... +.-..|-+-|.-...
T Consensus 102 i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~ 181 (220)
T COG0036 102 IQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLE 181 (220)
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 99999759857799789997789998986578999985779986631479999999999997402477599996896988
Q ss_pred HHHHHHHCCCCEEEECC-----CCHHHHHHHHHHHHH
Q ss_conf 99999976998899879-----898999999999740
Q gi|254780476|r 90 DEERIRKGGCEAYISKP-----ISLSIFMETIKKYIG 121 (123)
Q Consensus 90 ~~~~~~~~g~~~~l~KP-----i~~~~L~~~i~~~l~ 121 (123)
...++.++|++-++.=. =+....++.++..+.
T Consensus 182 t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 182 TIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred HHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8999997399999997778678119999999998762
No 302
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.23 E-value=28 Score=16.60 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=59.3
Q ss_pred CEE-EEECCCHH---HHHHHHHHHHHCCCEEEE---E----CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 778-99539989---999999999978989999---8----897999999982799899995041296959999999828
Q gi|254780476|r 3 KKV-MIVEDNEL---NMKLFRDLIETSGYIALQ---T----RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kki-LiVDD~~~---~~~~l~~~l~~~g~~v~~---a----~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
||+ ++.+|+.. ..+.++..++..|+++.. . .+-...+..+++..||+|++-. ...-++..+.+++|+.
T Consensus 139 k~vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~~pD~v~~~~-~~~~~~~~~~~q~~~~ 217 (347)
T cd06336 139 KKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGG-PSPAPAALVIKQAREL 217 (347)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHC
T ss_conf 789999237604699999999987525976999995488866779999999965969999916-6735799999999976
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 5768995999992499899999997699889
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
. -+.|++..++..............+++.
T Consensus 218 G--~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (347)
T cd06336 218 G--FKGGFLSCTGDKYDELLVATGADFMEGV 246 (347)
T ss_pred C--CCCCEEEECCCCCHHHHHHHHHHHHCCE
T ss_conf 9--9875898657666799998538864937
No 303
>PRK08506 replicative DNA helicase; Provisional
Probab=43.99 E-value=28 Score=16.58 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHHHCCCEEEEEC--CHHHHH---HHH-HHC-CCCEEEEEEE--CCCCCH--------HHHHHHHHHCCCCCCCCEEE
Q ss_conf 999997898999988--979999---999-827-9989999504--129695--------99999998285768995999
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGMEAL---ELA-RQH-KPDVIIMDIQ--LQEISG--------LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~eal---~~l-~~~-~~dlillD~~--mp~~dG--------~el~~~ir~~~~~~~ipii~ 81 (123)
...+..+.+.+.... +-.+-. +.+ +++ ..++|++||- |..... -++.+.+|....--++|||+
T Consensus 269 ~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livIDYLQLm~~~~~~~~R~~ev~~ISr~LK~lAkEl~vPVia 348 (473)
T PRK08506 269 CDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSKNFKDRHLQISEISRGLKLLARELDIPIIA 348 (473)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99986598899889999999999999999997699878996367554688875308899999999999999996997999
Q ss_pred EEEC
Q ss_conf 9924
Q gi|254780476|r 82 VTAF 85 (123)
Q Consensus 82 ~t~~ 85 (123)
+|=-
T Consensus 349 LSQL 352 (473)
T PRK08506 349 LSQL 352 (473)
T ss_pred ECCC
T ss_conf 7036
No 304
>PRK08104 consensus
Probab=43.90 E-value=28 Score=16.57 Aligned_cols=84 Identities=14% Similarity=0.266 Sum_probs=31.4
Q ss_pred HHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf 999978989-9998897999999982-79989999504129695999999982857689959999924998999999976
Q gi|254780476|r 20 DLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG 97 (123)
Q Consensus 20 ~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~ 97 (123)
++|+..... |....+.++|..+++. ..=.+=++.+.|-.-+.++..+.+++.. .++ +|..-+-...+..+++.++
T Consensus 10 ~ll~~~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~--p~~-~vGaGTV~~~e~~~~ai~a 86 (212)
T PRK08104 10 DIFTRGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTPCALEAIRAIAKEV--PEA-IVGAGTVLNPQQLAEVTEA 86 (212)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHHHC
T ss_conf 9997498689997799999999999999879988999688814999999999868--985-6854202679999999985
Q ss_pred CCCEEEECCC
Q ss_conf 9988998798
Q gi|254780476|r 98 GCEAYISKPI 107 (123)
Q Consensus 98 g~~~~l~KPi 107 (123)
|++ |+.-|.
T Consensus 87 GA~-FiVSP~ 95 (212)
T PRK08104 87 GAQ-FAISPG 95 (212)
T ss_pred CCC-EEECCC
T ss_conf 999-998489
No 305
>TIGR01556 rhamnosyltran rhamnosyltransferase; InterPro: IPR006446 This subfamily is composed of sequences from the gamma proteobacteria that function as L-rhamnosyltransferases in the synthesis of their respective surface polysaccharides. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In Pseudomonas aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids . .
Probab=43.81 E-value=28 Score=16.56 Aligned_cols=65 Identities=11% Similarity=0.248 Sum_probs=44.2
Q ss_pred CEEEEECCC--HHHHHHHHHHHHH-CCCEEEEECCHHHHHHH---------HHHCCCCEEEEEEE-CCCCCHHH-HHHHH
Q ss_conf 778995399--8999999999997-89899998897999999---------98279989999504-12969599-99999
Q gi|254780476|r 3 KKVMIVEDN--ELNMKLFRDLIET-SGYIALQTRNGMEALEL---------ARQHKPDVIIMDIQ-LQEISGLE-ITKQI 68 (123)
Q Consensus 3 kkiLiVDD~--~~~~~~l~~~l~~-~g~~v~~a~~g~eal~~---------l~~~~~dlillD~~-mp~~dG~e-l~~~i 68 (123)
-+|++||++ ..++.-+++.+.. ++..+..-++- +++.. ++.+.-.++++|.. .|..||.+ ++...
T Consensus 25 ~~~i~vDN~~~s~~~~~l~~~~~~~~~i~~i~ls~n-~GiA~AqN~Gl~~~~~~~~~~vlLlDqDS~~~~~~~~~fl~~~ 103 (291)
T TIGR01556 25 DKIIVVDNSSLSEIRSELKELLAKKEKIKLISLSDN-EGIAAAQNLGLKASFKKGVEKVLLLDQDSRPAEDGVNKFLAKE 103 (291)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 089999789543320578999850077689963785-4128898799999987389668885127843203489999999
No 306
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.80 E-value=28 Score=16.56 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCC----HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 99999999997898999-988979999999827998999950412969----5999999982857689959999924998
Q gi|254780476|r 14 NMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEIS----GLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~d----G~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
..+-+.......|.++. ++.+.+|.-..+.. .+++|=+ +=-+.. ..+...++...-. .+..+|.=||-...
T Consensus 109 ~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~-~a~iIGI--NnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~~~ 184 (217)
T cd00331 109 QLKELYELARELGMEVLVEVHDEEELERALAL-GAKIIGI--NNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTP 184 (217)
T ss_pred HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC-CCCEEEE--CCCCCHHCEECHHHHHHHHHHCC-CCCEEEECCCCCCH
T ss_conf 99999999999498279885899999999957-9987842--16771230347899999996489-89889982799999
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999999769988998
Q gi|254780476|r 89 GDEERIRKGGCEAYIS 104 (123)
Q Consensus 89 ~~~~~~~~~g~~~~l~ 104 (123)
.+.....+.|++++|.
T Consensus 185 ~di~~l~~~G~d~~LI 200 (217)
T cd00331 185 EDVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999999879999998
No 307
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=43.64 E-value=29 Score=16.55 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=47.4
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 99988979999999827998999950412969599999998285768995999992499899999997699889
Q gi|254780476|r 29 ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 29 v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
..++.+-+|+.+.+.. .+|.|++|=.-|+ +=-+....+|+... . ..+-.||.-..+...+..+.|++.+
T Consensus 84 ~VEv~tl~e~~~a~~~-~~d~I~LDn~spe-~l~~~v~~l~~~~~--~-v~iEaSGgI~~~ni~~yA~tGvD~I 152 (169)
T pfam01729 84 EVEVENLEELEEALEA-GADIIMLDNFSPE-EVREAVEELDERAG--R-VLLEVSGGITLDNVLEYAKTGVDVI 152 (169)
T ss_pred EEEEEHHHHHHHHHHC-CCCEEEECCCCHH-HHHHHHHHHHHHCC--C-EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 9996019989999846-9989997799999-99999999997589--6-7999618999999999997699999
No 308
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=43.55 E-value=29 Score=16.54 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHCCCCEEEEEEE--CC--CC---CHH----HHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 998279989999504--12--96---959----99999982857689959999924
Q gi|254780476|r 41 LARQHKPDVIIMDIQ--LQ--EI---SGL----EITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 41 ~l~~~~~dlillD~~--mp--~~---dG~----el~~~ir~~~~~~~ipii~~t~~ 85 (123)
+.+.+.+|+|++|+- |. +. +-. ++++.+|.....-++||++++--
T Consensus 135 ~~~~~~~~~vvIDylqll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~Vi~lsQl 190 (271)
T cd01122 135 MAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99828998899831785036786773189999999999999999979977999526
No 309
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=43.39 E-value=29 Score=16.52 Aligned_cols=79 Identities=19% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCEEEEECCCH----HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 87789953998----999999999997898999988-------9799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQTR-------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~a~-------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.||+-++.+|- ...+.++..++..|.++.... +-...+..++...||+|++ ..++-++..++++.|+
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~ki~~a~pD~v~~--~~~g~~~~~~~~q~~~ 210 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVS--TVNGDSNVAFFKQLKA 210 (348)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf 98799991685134899999999999859989999813799756799999999769999999--4765124899999998
Q ss_pred CCCC-CCCCEEEE
Q ss_conf 8576-89959999
Q gi|254780476|r 71 DSEL-QEIPVIAV 82 (123)
Q Consensus 71 ~~~~-~~ipii~~ 82 (123)
..-. +.+|++..
T Consensus 211 ~G~~~~~~~~~~~ 223 (348)
T cd06355 211 AGITASKVPVLSF 223 (348)
T ss_pred HCCCCCCCEEEEE
T ss_conf 1787667358884
No 310
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.27 E-value=29 Score=16.52 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=35.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
Q ss_conf 87789953998999999999997---89899998897999999982799899995041296959999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET---SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~---~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~ 65 (123)
.++||-+||--....-=++-|=+ .|.. +.+-..||+..-++.||+|++ -.|-+..-.+++
T Consensus 154 ~~HIlTIEDPIE~vh~skkslI~QREvG~d---T~sF~~aLraALReDPDVIlv-GEmRD~ETi~~A 216 (353)
T COG2805 154 AKHILTIEDPIEYVHESKKSLINQREVGRD---TLSFANALRAALREDPDVILV-GEMRDLETIRLA 216 (353)
T ss_pred CCCEEEECCCHHHHHCCHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHH
T ss_conf 751687237468650432766668774542---788999999986029997998-213469999999
No 311
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=43.24 E-value=29 Score=16.51 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.7
Q ss_pred HHCCCCEEEEEEECCCC-----CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 82799899995041296-----959999999828576899599999249989999999
Q gi|254780476|r 43 RQHKPDVIIMDIQLQEI-----SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 (123)
Q Consensus 43 ~~~~~dlillD~~mp~~-----dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~ 95 (123)
...|.-+.++|...-+. -|-.+++.|-.. ...++|+|++||+...--.+-.+
T Consensus 125 ~~~P~~~av~dF~FmGGSmGSVvGeK~vraie~A-~~~~~P~~i~sASGGARMQE~~~ 181 (292)
T TIGR00515 125 YGMPIVVAVMDFSFMGGSMGSVVGEKIVRAIEKA-VADRVPLVIFSASGGARMQEGLL 181 (292)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCCHHHHHHHH
T ss_conf 4842799975143458863026888999999999-87379889996787516899988
No 312
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=43.02 E-value=29 Score=16.49 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=48.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 7899539989999999999978989--99988979999999827998999950412969599999998285
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS 72 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~ 72 (123)
+|.-+|-++...+.-+..|..+|+. .....+|.+++. ...+||.|++.-..|..- -.+..+++...
T Consensus 100 ~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~--~~apfD~Iiv~aa~~~iP-~~l~~qL~~gG 167 (205)
T pfam01135 100 RVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWP--EFAPYDAIHVGAAAPEIP-EALIDQLKEGG 167 (205)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCEEEEEEECCCCC-HHHHHHCCCCC
T ss_conf 699983589999999999998488865898456455883--339805899975067688-99999628797
No 313
>PRK04195 replication factor C large subunit; Provisional
Probab=43.00 E-value=29 Score=16.49 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=50.9
Q ss_pred HHHHCCCEEEEE--CC--HHHHHHHHH----H------CCCCEEEEEEECCCCC------HH-HHHHHHHHCCCCCCCCE
Q ss_conf 999789899998--89--799999998----2------7998999950412969------59-99999982857689959
Q gi|254780476|r 21 LIETSGYIALQT--RN--GMEALELAR----Q------HKPDVIIMDIQLQEIS------GL-EITKQIKEDSELQEIPV 79 (123)
Q Consensus 21 ~l~~~g~~v~~a--~~--g~eal~~l~----~------~~~dlillD~~mp~~d------G~-el~~~ir~~~~~~~ipi 79 (123)
+.+..||++.+. ++ +.+.++... . .+..+|++|= .++++ |. ++.+-|++ ...||
T Consensus 60 lAk~~g~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDE-vD~l~~~~d~gg~~al~~~ik~----s~~Pi 134 (403)
T PRK04195 60 LANDYGWEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDE-VDGIHGNADRGGVRAILEIIKK----AKNPI 134 (403)
T ss_pred HHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHC----CCCEE
T ss_conf 999849985997710114789999999987606887788734999634-3445724447999999999854----88708
Q ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999924998999999976998899879898999999999740
Q gi|254780476|r 80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|++....... ..+.+...+..+-.+|++.+.+...++++..
T Consensus 135 Ili~Nd~~~~-~~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~ 175 (403)
T PRK04195 135 ILTANDPYDP-SLRPLRNACLMIEFKRLSKRSIVPVLKRICR 175 (403)
T ss_pred EEEECCCCCC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 9982684556-7177997661221799499999999999999
No 314
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=42.83 E-value=30 Score=16.47 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 8778995-3998---9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r 2 LKKVMIV-EDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 (123)
Q Consensus 2 ~kkiLiV-DD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~ 70 (123)
.|||-++ +|+. ...+.++..++..|.+|.. ..+-...+..++...||+|++- +..-++..+++++|+
T Consensus 132 ~kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~ 209 (333)
T cd06331 132 GKRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLST--LVGDSNVAFYRQFAA 209 (333)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHH
T ss_conf 987999944861789999999999998599499999706997247999999876599999993--566039999999997
Q ss_pred CCCCCCCCEEEEEECCCHHHH
Q ss_conf 857689959999924998999
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDE 91 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~ 91 (123)
..-... .+.+.+........
T Consensus 210 ~G~~~~-~~~~~~~~~~~~~~ 229 (333)
T cd06331 210 AGLDAD-RIPILSLTLDENEL 229 (333)
T ss_pred CCCCCC-CEEEEECCCCHHHH
T ss_conf 599966-61899754567889
No 315
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=42.76 E-value=30 Score=16.47 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=63.3
Q ss_pred CEE-EEECCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 778-9953998---9999999999978989999-------8897999999982799899995041296959999999828
Q gi|254780476|r 3 KKV-MIVEDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kki-LiVDD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
||+ +|.+|+. ...+.++..++..|.++.. ..+-...+..++...||+|++- ....++..++++.|+.
T Consensus 136 kkva~i~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~ 213 (334)
T cd06327 136 KKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLA--NAGADTVNAIKQAAEF 213 (334)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC
T ss_conf 87999953745669999999999996598799999628997556899988775599999991--6654799999999974
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCE-EEECCCC-------HHHHHHHHHHHHH
Q ss_conf 576899599999249989999999769988-9987989-------8999999999740
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGGCEA-YISKPIS-------LSIFMETIKKYIG 121 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~-~l~KPi~-------~~~L~~~i~~~l~ 121 (123)
.-.. ++.+.+...........-...+++ |.+-|+. ..+|.+..++..|
T Consensus 214 G~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g 269 (334)
T cd06327 214 GLTK--GQKLAGLLLFLTDVHSLGLDAAQGLYLTTAWYWDLPNDETRAFVKRFQAKYG 269 (334)
T ss_pred CCCC--CCEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9988--8678864677799987527861857997056656677779999999999868
No 316
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=42.70 E-value=30 Score=16.46 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=36.6
Q ss_pred HCCCCEEEEEE------ECCCCCHH--HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 27998999950------41296959--9999998285768995999992499899999997699889
Q gi|254780476|r 44 QHKPDVIIMDI------QLQEISGL--EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 44 ~~~~dlillD~------~mp~~dG~--el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+.-.|++=+.. .++...|+ .+++.||+.. ++||+...........+++++.|..|+
T Consensus 238 ~~GvD~i~vs~G~~~~~~~~~~~g~~~~~a~~ik~~~---~ipvi~vG~i~~~~~ae~~l~~G~aD~ 301 (337)
T PRK13523 238 EQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIKEHA---NIATGAVGLITTGAQAEEILNNNRADL 301 (337)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCH
T ss_conf 7499989957885547767778753348999999876---970999838699999999998799479
No 317
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.54 E-value=30 Score=16.45 Aligned_cols=96 Identities=11% Similarity=0.250 Sum_probs=61.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 778995399899999999999789899998-8979999999827998999950412969599999998285768995999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQT-RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a-~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
.++.++|.|+...+.. ...|+.+.-. .+-.+-++.+.-++-.++++-+.=| .+-.++.+.+|++. +++||++
T Consensus 424 i~~vviD~d~~~V~~~----r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~-~~~~~iv~~~r~~~--P~l~I~a 496 (602)
T PRK03659 424 MRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-EDTMKLVELCQQHF--PHLHILA 496 (602)
T ss_pred CCEEEEECCHHHHHHH----HHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCH-HHHHHHHHHHHHHC--CCCEEEE
T ss_conf 9989997867999999----978990897589999999867904058899982989-99999999999878--6996999
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 99249989999999769988998798
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
=+ ....+..+..+.|++.++.--+
T Consensus 497 Ra--r~~~~~~~L~~~Ga~~vv~Et~ 520 (602)
T PRK03659 497 RA--RGRVEAHELLQAGVTQFSRETF 520 (602)
T ss_pred EE--CCHHHHHHHHHCCCCEEECCHH
T ss_conf 86--9789999999789997866278
No 318
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=42.09 E-value=30 Score=16.41 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|.-+++... ..+|+|..-.... ..+..+.|.++||.+|-+.+.|.++|.+.+.+
T Consensus 273 p~vllEAma-----~G~PvIatd~~~G---~~EiI~dg~nG~Lv~~~d~~~la~~i~~li~~ 326 (361)
T PRK09922 273 PMTLLEAMS-----YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 326 (361)
T ss_pred CCHHHHHHH-----HCCCEEEECCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 728999999-----5998999759999---08871589837997799999999999999848
No 319
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=41.79 E-value=31 Score=16.38 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 99999827998999950412-----969599999998285768995999992499899999997
Q gi|254780476|r 38 ALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 (123)
Q Consensus 38 al~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~ 96 (123)
|.+++.+..+|+|++|=-.. -.+==|+..-+++.|...+ |++|+...+.......+
T Consensus 114 a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~---vIiTGr~ap~~lie~AD 174 (198)
T COG2109 114 AKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTH---VIITGRGAPPELIELAD 174 (198)
T ss_pred HHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCE---EEEECCCCCHHHHHHHH
T ss_conf 99997388878899721268887388879999999955998767---99979999989999877
No 320
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.61 E-value=31 Score=16.36 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=51.4
Q ss_pred HHHHHHHHHHCCC-CEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHC---CCCEEEE---
Q ss_conf 7999999982799-899995041296-95--999999982857689959999924998999999976---9988998---
Q gi|254780476|r 35 GMEALELARQHKP-DVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG---GCEAYIS--- 104 (123)
Q Consensus 35 g~eal~~l~~~~~-dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~---g~~~~l~--- 104 (123)
..+.++.+.+... .+++.|+.--++ .| +++++.+++.. ++|+|+--+-...++..+..+. |+++.+.
T Consensus 147 ~~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l~~~i~~~~---~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG~A 223 (241)
T PRK00748 147 LEDLAKRFEDAGVAAIIYTDISRDGTLSGPNVELTRELAAAT---PIPVIASGGVSSLDDIRALKALGPEGVEGVIVGKA 223 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHH
T ss_conf 899999998558756999887056854768999999999868---99899988999999999998603179248998789
Q ss_pred ---CCCCHHHHHHHHHH
Q ss_conf ---79898999999999
Q gi|254780476|r 105 ---KPISLSIFMETIKK 118 (123)
Q Consensus 105 ---KPi~~~~L~~~i~~ 118 (123)
.-++.++.+..++.
T Consensus 224 ly~g~i~l~eal~~~~~ 240 (241)
T PRK00748 224 LYEGKFDLAEALACWQN 240 (241)
T ss_pred HHCCCCCHHHHHHHHHC
T ss_conf 87799899999998652
No 321
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.54 E-value=31 Score=16.36 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=47.2
Q ss_pred CCEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE------CCCCHHHHHHHHH
Q ss_conf 9899995041296-95--9999999828576899599999249989999999769988998------7989899999999
Q gi|254780476|r 47 PDVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS------KPISLSIFMETIK 117 (123)
Q Consensus 47 ~dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~------KPi~~~~L~~~i~ 117 (123)
-.+++.|+.-.++ .| +++++++++. .++|+|+--+-...++..++.+.|+++.+. .-+++.++.+.++
T Consensus 167 geil~tdI~rDGt~~G~d~~l~~~i~~~---~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~L~ 243 (252)
T PRK13597 167 GEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRYLA 243 (252)
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHH
T ss_conf 9999975737684447695999999850---7998999789899999999987899699871276779999999999999
No 322
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.47 E-value=31 Score=16.35 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHCCCCEEEEEEECCC----CCHH----------HHHHHHHHCCCCCCCCEEEEEECCCHHHHH----HHHHCCC--C
Q ss_conf 998279989999504129----6959----------999999828576899599999249989999----9997699--8
Q gi|254780476|r 41 LARQHKPDVIIMDIQLQE----ISGL----------EITKQIKEDSELQEIPVIAVTAFAMKGDEE----RIRKGGC--E 100 (123)
Q Consensus 41 ~l~~~~~dlillD~~mp~----~dG~----------el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~~~~~g~--~ 100 (123)
......|.+=++-+..|. ..|+ +..+..|+.....++|-|++|+......-. -+.++|+ +
T Consensus 191 efs~~~ygvDvlKvE~Pvn~~~veg~~~ge~~yt~~ea~~~fke~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGa~fs 270 (324)
T PRK12399 191 VFSKPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAATDLPYIYLSAGVSAELFQETLVFAHEAGAKFN 270 (324)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 97033569876986157660101355667521129999999999874459997998089998999999999998599733
Q ss_pred EEEE
Q ss_conf 8998
Q gi|254780476|r 101 AYIS 104 (123)
Q Consensus 101 ~~l~ 104 (123)
+||-
T Consensus 271 G~L~ 274 (324)
T PRK12399 271 GVLC 274 (324)
T ss_pred CEEE
T ss_conf 5534
No 323
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=41.17 E-value=31 Score=16.32 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=49.2
Q ss_pred ECCHHHHHHHHH-HCCCCEE-EEEEECCCCCHHHHHHHHH----HC-CCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf 889799999998-2799899-9950412969599999998----28-57689959999924998999999976
Q gi|254780476|r 32 TRNGMEALELAR-QHKPDVI-IMDIQLQEISGLEITKQIK----ED-SELQEIPVIAVTAFAMKGDEERIRKG 97 (123)
Q Consensus 32 a~~g~eal~~l~-~~~~dli-llD~~mp~~dG~el~~~ir----~~-~~~~~ipii~~t~~~~~~~~~~~~~~ 97 (123)
.++-+||+..+. +.+|.+| ++...|-+--|-+..+.|| ++ +++++++||.+++-+-++..+..+..
T Consensus 76 ~~~i~eAid~l~~r~kP~~IGl~sTgLtEtrG~Di~~~~r~~r~~hvp~~~g~~vv~VnTPDF~G~~e~G~A~ 148 (451)
T TIGR01285 76 DEHIEEAIDTLKKRAKPKVIGLLSTGLTETRGEDIARVVRQFREKHVPQLKGTEVVLVNTPDFKGSLEDGYAK 148 (451)
T ss_pred CCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 6038899897305878548998744554123000378999998864055439628998778754623458999
No 324
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.91 E-value=32 Score=16.30 Aligned_cols=112 Identities=13% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCEEEEE-CCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 8778995-399899999999999789--8999988979999999827998999950412969599999998285768995
Q gi|254780476|r 2 LKKVMIV-EDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 2 ~kkiLiV-DD~~~~~~~l~~~l~~~g--~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
...||+. |+|+...+.+.+..++|| |.+....|...-++.+++ .=+.+-+.|=+.+--++...||+.... -
T Consensus 32 A~gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~nw~~~i~~wk~---gG~vvHLTMYG~~i~dv~~ei~~~~k~---~ 105 (179)
T COG1303 32 ADGILLDGEEDEKVVESVEDVVERWGGPFFVKFGVNWRKVIREWKE---GGIVVHLTMYGLNIDDVIDEIRESKKD---V 105 (179)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC---CCEEEEEEECCCCCHHHHHHHHHCCCC---E
T ss_conf 7547973764377999999999854997799972238999987404---877999996277630341898746872---7
Q ss_pred EEEEEECCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHH
Q ss_conf 999992499899999997699889987989-899999999974
Q gi|254780476|r 79 VIAVTAFAMKGDEERIRKGGCEAYISKPIS-LSIFMETIKKYI 120 (123)
Q Consensus 79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-~~~L~~~i~~~l 120 (123)
+|++-+.--+....+..+..+ +.=+.|.+ ...|.-.+.+++
T Consensus 106 lvvVGaeKVp~evYelADyNV-~VgnQPHSEVaaLAvFLDRl~ 147 (179)
T COG1303 106 LVVVGAEKVPGEVYELADYNV-SVGNQPHSEVAALAVFLDRLF 147 (179)
T ss_pred EEEECCCCCCHHHHHHCCCCE-ECCCCCCHHHHHHHHHHHHHH
T ss_conf 999756628888964234413-307876089999999999971
No 325
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=40.89 E-value=32 Score=16.30 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=66.6
Q ss_pred EEECCCHHHHHHHH---HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99539989999999---999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r 6 MIVEDNELNMKLFR---DLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 6 LiVDD~~~~~~~l~---~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
||--|++..-.-++ .-+...|..+...+|..+.--.--.++.|+=++--- -.-.|..+-+.+++.. ++.--++|
T Consensus 39 Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A-~KP~~~~fr~Al~~m~-l~~~~vvm- 115 (175)
T COG2179 39 LVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA-KKPFGRAFRRALKEMN-LPPEEVVM- 115 (175)
T ss_pred EECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHCC-CCHHHEEE-
T ss_conf 11046998999999999999865977999818978888766652597234022-5962799999999809-98368799-
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHH
Q ss_conf 92499899999997699889987989-89999999997
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPIS-LSIFMETIKKY 119 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi~-~~~L~~~i~~~ 119 (123)
.|...-.|..-.-.+|+..++.+|+. ++.+...+.|.
T Consensus 116 VGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR~ 153 (175)
T COG2179 116 VGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINRW 153 (175)
T ss_pred ECCHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 85125566641341472799998711664055555689
No 326
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=40.62 E-value=32 Score=16.27 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=49.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEE----EECCHHHHHHHHHHCCC-CEEEEEEE--------CCCCCH----------H
Q ss_conf 9953998999999999997898999----98897999999982799-89999504--------129695----------9
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIAL----QTRNGMEALELARQHKP-DVIIMDIQ--------LQEISG----------L 62 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~----~a~~g~eal~~l~~~~~-dlillD~~--------mp~~dG----------~ 62 (123)
+.+||-+..+. +.+-|-.-|..+. ....+.||++.++.+.| |+++==-. -....| -
T Consensus 14 i~~~~~~~A~~-lA~aL~egG~~~~EvTlRT~~A~~aI~~l~~~~P~~~~iGAGTVL~~~Q~~~A~~AGA~F~vSPG~~p 92 (205)
T TIGR01182 14 IRIDDVEDALP-LAKALIEGGLRVLEVTLRTPVALEAIRALRKEVPKDALIGAGTVLNPEQLRQAVAAGAQFIVSPGLTP 92 (205)
T ss_pred EEECCHHHHHH-HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCCEEECCCCCH
T ss_conf 87267877789-99999867980898851472168999999972823348716764898999999970895787697888
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999982857689959999924998999999976998899879
Q gi|254780476|r 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106 (123)
Q Consensus 63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP 106 (123)
++++... .+.+|+| =|-.++....++++.|++.+-.=|
T Consensus 93 ~l~~~~~----~~~~P~i--PGV~tpsEi~~Al~~G~~~lKlFP 130 (205)
T TIGR01182 93 ELAKHAK----DKGIPII--PGVATPSEIMLALELGITALKLFP 130 (205)
T ss_pred HHHHHHH----HCCCCEE--CCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9999985----0888121--777687899999875774652125
No 327
>PRK06202 hypothetical protein; Provisional
Probab=40.60 E-value=32 Score=16.27 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=52.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
+|.=+|=|+...+.-+..-...|..+..+.. +++.. ..+.||+|+....+-..+.-++..-++........-+++
T Consensus 91 ~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~--d~l~~-~~~~~DvV~~sl~LHHf~d~ql~~ll~~~~~~ar~~vvi 165 (233)
T PRK06202 91 EVTAIDPDPRAIRFARANARRRGVTFRFAVS--DELVA-EGERFDVVYSNHFLHHLDDADVVRLLADMAALARRLVLH 165 (233)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCCEEEEEH--HHHCC-CCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 8999779889999998734036983699734--32024-578875760324686498299999999999863826997
No 328
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=40.54 E-value=32 Score=16.26 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=35.1
Q ss_pred CHHHHHH---HHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9899999---999999789899998897------9999999827998999950412969599999998285768995999
Q gi|254780476|r 11 NELNMKL---FRDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 11 ~~~~~~~---l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|+...++ +...++..||.+..+.+. .+.++.+.++.+|-+++-- ...--+..+.+++ ..+|+|+
T Consensus 11 npff~~~~~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~~---~~~~~~~~~~l~~----~~iPvV~ 83 (265)
T cd06299 11 NPYFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVP---HEQSAEQLEDLLK----RGIPVVF 83 (265)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE---CCCCHHHHHHHHH----CCCCEEE
T ss_conf 89999999999999998599899997899989999999999947999999980---6799899999996----6998998
Q ss_pred E
Q ss_conf 9
Q gi|254780476|r 82 V 82 (123)
Q Consensus 82 ~ 82 (123)
+
T Consensus 84 i 84 (265)
T cd06299 84 V 84 (265)
T ss_pred E
T ss_conf 3
No 329
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=40.39 E-value=15 Score=18.24 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEE-------E-EEECCCCC---HHHHHHHHHHCCCCCCCCEEEE-
Q ss_conf 999999997898-999988979999999827998999-------9-50412969---5999999982857689959999-
Q gi|254780476|r 16 KLFRDLIETSGY-IALQTRNGMEALELARQHKPDVII-------M-DIQLQEIS---GLEITKQIKEDSELQEIPVIAV- 82 (123)
Q Consensus 16 ~~l~~~l~~~g~-~v~~a~~g~eal~~l~~~~~dlil-------l-D~~mp~~d---G~el~~~ir~~~~~~~ipii~~- 82 (123)
..+++.++..+. +.-.+-||.-||..=+.. |+-|= - ++.||+.. =-|++..+|+..+..++|+|+=
T Consensus 3 ~~fR~a~~~~~ilq~pGa~n~~~AL~Ae~aG-F~A~YLSGaa~aa~sLGlPDLG~~tL~Eva~~~r~Itr~~~LPlLVD~ 81 (287)
T TIGR02317 3 KRFREAIAKEDILQIPGAINGLVALLAERAG-FEAIYLSGAAVAAGSLGLPDLGITTLTEVAERARRITRVTDLPLLVDA 81 (287)
T ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHHHHCC-CCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 1059998568974871406189999998637-556610168774132067767667878999998877753048727863
Q ss_pred -EECCCHHHHH----HHHHCCCCE
Q ss_conf -9249989999----999769988
Q gi|254780476|r 83 -TAFAMKGDEE----RIRKGGCEA 101 (123)
Q Consensus 83 -t~~~~~~~~~----~~~~~g~~~ 101 (123)
||+...=... +..++|+-+
T Consensus 82 DTGFGea~nvaRTVreme~AGaAa 105 (287)
T TIGR02317 82 DTGFGEALNVARTVREMEDAGAAA 105 (287)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 328983544999999999844540
No 330
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=40.28 E-value=32 Score=16.24 Aligned_cols=70 Identities=24% Similarity=0.393 Sum_probs=47.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----------HHHHHHHHC
Q ss_conf 8778995399899999999999789899998897999999982799899995041296959----------999999828
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL----------EITKQIKED 71 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~----------el~~~ir~~ 71 (123)
|++|.|||=..-|..-++..|+..|+++....+.++.. .-|.++ +|+..-| .+.+.|++.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~------~AD~li----LPGVGaf~~am~~L~~~gl~~~i~~~ 70 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL------KADKLI----LPGVGAFGAAMANLRERGLIEAIKEA 70 (204)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHH------HCCEEE----ECCCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 97899997286359999999997598069816988971------088878----66978889999988863669999999
Q ss_pred CCCCCCCEEEE
Q ss_conf 57689959999
Q gi|254780476|r 72 SELQEIPVIAV 82 (123)
Q Consensus 72 ~~~~~ipii~~ 82 (123)
-. ...|++.+
T Consensus 71 ~~-~~kP~LGI 80 (204)
T COG0118 71 VE-SGKPFLGI 80 (204)
T ss_pred HH-CCCCEEEE
T ss_conf 75-59977998
No 331
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.19 E-value=33 Score=16.23 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=25.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH
Q ss_conf 78995399899999999999789899998897
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNG 35 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g 35 (123)
.+.|+-||+..++-+.+++++.||.+....++
T Consensus 27 ~l~Vlvd~~~a~~ni~~~a~~~G~~v~~~e~~ 58 (67)
T cd03421 27 EIEVLVDNEVAKENVSRFAESRGYEVSVEEKG 58 (67)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 79999868417889999999779987899839
No 332
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.94 E-value=33 Score=16.21 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999828576899599999249------9899999997699889987989899
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI 111 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~ 111 (123)
|++++++|.+ .++|++++|.++ .+.....+.+.|+++.+.--+.+++
T Consensus 80 ~~~v~~~r~~---~~~PivlMtY~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE 132 (263)
T CHL00200 80 LSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE 132 (263)
T ss_pred HHHHHHHHHC---CCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 9999998606---7998899862068887388999999998499868747999788
No 333
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.80 E-value=33 Score=16.20 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCC
Q ss_conf 989999999999978989------999889799---999998279989999504129695---99999998285768995
Q gi|254780476|r 11 NELNMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIP 78 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ip 78 (123)
++..++.+.+.|+..|.. +..-+-|+. |+..+-...|+++++|=-....|- .++.+.+++......+.
T Consensus 102 ~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~LD~~~~~~l~~~l~~l~~~~~~T 181 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT 181 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 29999999999987699878728945589899999999999865999999718876559899999999999999974998
Q ss_pred EEEEEEC
Q ss_conf 9999924
Q gi|254780476|r 79 VIAVTAF 85 (123)
Q Consensus 79 ii~~t~~ 85 (123)
+|++|-.
T Consensus 182 vi~vTHd 188 (211)
T cd03298 182 VLMVTHQ 188 (211)
T ss_pred EEEECCC
T ss_conf 9999889
No 334
>PRK13127 consensus
Probab=39.74 E-value=33 Score=16.19 Aligned_cols=112 Identities=9% Similarity=0.116 Sum_probs=66.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECCCCCHH---------HHHHHHHHCC
Q ss_conf 899539989999999999978989999--8-897999999982799899995041296959---------9999998285
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQ--T-RNGMEALELARQHKPDVIIMDIQLQEISGL---------EITKQIKEDS 72 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~--a-~~g~eal~~l~~~~~dlillD~~mp~~dG~---------el~~~ir~~~ 72 (123)
++++|=-....+-+...+...|+.... + .+..+=++.+.+....+|-+ +...+.+|. +.++++|+
T Consensus 119 lIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~-vs~~GvTG~~~~~~~~~~~~i~~ik~-- 195 (262)
T PRK13127 119 LIIPDLPVEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFVYL-VSRLGVTGAREDVEEATFDLLKRART-- 195 (262)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE-EECCCCCCCCCCCHHHHHHHHHHHHH--
T ss_conf 996699978999999999855832799858999899999998438981899-84355568765552889999999996--
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE---------CCCCHHHHHHHHHHHH
Q ss_conf 76899599999249989999999769988998---------7989899999999974
Q gi|254780476|r 73 ELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS---------KPISLSIFMETIKKYI 120 (123)
Q Consensus 73 ~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~---------KPi~~~~L~~~i~~~l 120 (123)
..++|+.+=-|-..+++..+..+.|+++.+. +..+.+++.+.+.++.
T Consensus 196 -~t~~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSaiv~~i~~~~~~~~~~~~v~~~~ 251 (262)
T PRK13127 196 -TCKNKIAVGFGISKGEHAEELLDAGADGVIVGSALVDIIAEGGDNEEVADRLEELA 251 (262)
T ss_pred -CCCCCEEEEEEECCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -17998489933488999999986499999987899999996699789999999999
No 335
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.50 E-value=33 Score=16.17 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH---H----------CCCCEEEEEEECC-----------
Q ss_conf 877899539989999999999978989999889799999998---2----------7998999950412-----------
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---Q----------HKPDVIIMDIQLQ----------- 57 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~---~----------~~~dlillD~~mp----------- 57 (123)
||||||+===.+-+.. .++|...|..|....+..++++... + ...|+|+..=..|
T Consensus 3 ~KkvlV~GlG~SG~s~-a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGi~~~~p~~~~a~~ 81 (418)
T PRK00683 3 LQRVVVLGLGVTGKSV-ARFLAQKGVYVIGVDNSLEALQSCPYIHERYLEGAEEFPEQVDLVVRSPGIKPYHPWVEAAVA 81 (418)
T ss_pred CCEEEEEEECHHHHHH-HHHHHHCCCEEEEECCCHHHHHHCCHHHHHCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 8669998088879999-999997829899982981454546145554056233242349899989985998899999998
Q ss_pred ----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH-----HHHHCCCCEEEE
Q ss_conf ----96959999999828576899599999249989999-----999769988998
Q gi|254780476|r 58 ----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE-----RIRKGGCEAYIS 104 (123)
Q Consensus 58 ----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~-----~~~~~g~~~~l~ 104 (123)
-++.+|++-+ .....+.|+|.+||........ -....|...++.
T Consensus 82 ~~i~i~seiel~~~---~~~~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~ 134 (418)
T PRK00683 82 LKIPVVTDIQLAFQ---TPEFQRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAM 134 (418)
T ss_pred CCCCCCCHHHHHHH---HHHHCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEE
T ss_conf 69975407999974---244147987999768986609999999998679981888
No 336
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=39.34 E-value=34 Score=16.15 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=39.4
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99998279989999504129695999999982857689959999924998-99999997699889987989899999999
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK-GDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~-~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
++.+..-+||+|+.... ..+-+...++++ ..+|++.+.+.... +........|- .+-|+=..+++.+.++
T Consensus 51 ~E~il~l~PDLVi~~~~---~~~~~~~~~L~~----~gi~v~~~~~~~~~~~~~~~i~~lg~--i~g~e~~A~~li~~~~ 121 (235)
T cd01149 51 AEGVLSLKPTLVIASDE---AGPPEALDQLRA----AGVPVVTVPSTPTLDGLLTKIRQVAQ--ALGVPEKGEALAQEVR 121 (235)
T ss_pred HHHHHHCCCCEEEEECC---CCHHHHHHHHHH----CCCCEEECCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf 99997379988998177---683999999996----29907955898887899999999745--0665689999999999
Q ss_pred HHH
Q ss_conf 974
Q gi|254780476|r 118 KYI 120 (123)
Q Consensus 118 ~~l 120 (123)
+.+
T Consensus 122 ~~l 124 (235)
T cd01149 122 QRL 124 (235)
T ss_pred HHH
T ss_conf 999
No 337
>PRK10436 hypothetical protein; Provisional
Probab=39.09 E-value=34 Score=16.13 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 7999999982799899995
Q gi|254780476|r 35 GMEALELARQHKPDVIIMD 53 (123)
Q Consensus 35 g~eal~~l~~~~~dlillD 53 (123)
-..+++.+-++.||+|++.
T Consensus 273 fa~~lrs~LRqDPDVImvG 291 (461)
T PRK10436 273 FQRVLRALLRQDPDVIMVG 291 (461)
T ss_pred HHHHHHHHHCCCCCEEEEC
T ss_conf 9999999874699999865
No 338
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.05 E-value=34 Score=16.13 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=10.7
Q ss_pred HHHHHHCCCCEEEEEE
Q ss_conf 9999827998999950
Q gi|254780476|r 39 LELARQHKPDVIIMDI 54 (123)
Q Consensus 39 l~~l~~~~~dlillD~ 54 (123)
++.+..-+||+|+..-
T Consensus 65 ~E~I~~l~PDLIi~~~ 80 (270)
T cd01140 65 LEAIAALKPDLIIIGG 80 (270)
T ss_pred HHHHHHCCCCEEEECC
T ss_conf 9999713999999838
No 339
>PRK13137 consensus
Probab=39.02 E-value=34 Score=16.12 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 99999998285768995999992499------899999997699889987989899
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAM------KGDEERIRKGGCEAYISKPISLSI 111 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~------~~~~~~~~~~g~~~~l~KPi~~~~ 111 (123)
|++++++|+. .++|+|+++.++. +....++.++|+++.+.--+.+++
T Consensus 89 l~~~~~~r~~---~~~PivlM~Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE 141 (266)
T PRK13137 89 LELVRELRAL---TDTPLVIMTYLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQ 141 (266)
T ss_pred HHHHHHHCCC---CCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999975556---8987899934589987589999999997696099947999788
No 340
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=39.01 E-value=34 Score=16.12 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99998279989999504-12969599999998285768995999992
Q gi|254780476|r 39 LELARQHKPDVIIMDIQ-LQEISGLEITKQIKEDSELQEIPVIAVTA 84 (123)
Q Consensus 39 l~~l~~~~~dlillD~~-mp~~dG~el~~~ir~~~~~~~ipii~~t~ 84 (123)
++.+...+||+||.+.. +.+..+.....++++. .+|++++..
T Consensus 72 ~E~il~l~PDlIi~~~~~~~~~~~~~~~~~l~~~----gipv~~~~~ 114 (284)
T cd01148 72 KETVLAARPDLVFGGWSYGFDKGGLGTPDSLAEL----GIKTYILPE 114 (284)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHC----CCCEEEECC
T ss_conf 9999736998898345434453203339999865----996899244
No 341
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=38.83 E-value=34 Score=16.11 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE
Q ss_conf 99999999789899998897------99999998279989999
Q gi|254780476|r 16 KLFRDLIETSGYIALQTRNG------MEALELARQHKPDVIIM 52 (123)
Q Consensus 16 ~~l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlill 52 (123)
+.+.+.+...||.+..+.+. .+.++.+.++.+|-+++
T Consensus 19 ~gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl 61 (259)
T cd01542 19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIIL 61 (259)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999986998999978999899999999999569998999
No 342
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.67 E-value=34 Score=16.09 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEE--------CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHCCCCEE
Q ss_conf 89799999998279989999504--------12969599999998285768995999992499-899999997699889
Q gi|254780476|r 33 RNGMEALELARQHKPDVIIMDIQ--------LQEISGLEITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAY 102 (123)
Q Consensus 33 ~~g~eal~~l~~~~~dlillD~~--------mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~-~~~~~~~~~~g~~~~ 102 (123)
.+.++|.+...+...|++-.-+. =|+. -|+.+++|++. .++|+++.-+++. .++..++.+.|+.-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGn~HG~y~~~p~l-~~~~L~~I~~~---~~iPLVLHGgSG~~~e~i~~ai~~Gi~Kv 229 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKI-DFQRLAEIREV---VDVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred CCHHHHHHHHHHHCCCEEHHHHCCCCCCCCCCCCC-CHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHCCEEEE
T ss_conf 99999999999879781223323546777999947-89999999730---79998976999999999999997690699
No 343
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.63 E-value=34 Score=16.09 Aligned_cols=72 Identities=29% Similarity=0.362 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCCEEEEEEE-------CCCC-CH--------HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCC
Q ss_conf 99999998279989999504-------1296-95--------99999998285768995999992499899999997699
Q gi|254780476|r 36 MEALELARQHKPDVIIMDIQ-------LQEI-SG--------LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC 99 (123)
Q Consensus 36 ~eal~~l~~~~~dlillD~~-------mp~~-dG--------~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~ 99 (123)
.|.+++++++.|.+||+|-- +-.. +| .||+.++-.=....++.|||-|....--|..-...-.+
T Consensus 234 RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~ 313 (406)
T COG1222 234 RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRF 313 (406)
T ss_pred HHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC
T ss_conf 99999874149849998311223111136888850999999999998605889788768998558855557665088754
Q ss_pred CEEEECCC
Q ss_conf 88998798
Q gi|254780476|r 100 EAYISKPI 107 (123)
Q Consensus 100 ~~~l~KPi 107 (123)
+-.+-=|.
T Consensus 314 DRkIEfpl 321 (406)
T COG1222 314 DRKIEFPL 321 (406)
T ss_pred CCEEECCC
T ss_conf 53011689
No 344
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.55 E-value=35 Score=16.08 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=36.5
Q ss_pred HCCCEEEE-ECCHH-----HHHHHHHHCCCCEEEEEEECCCC-CH-------HHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 78989999-88979-----99999982799899995041296-95-------999999982857689959999924
Q gi|254780476|r 24 TSGYIALQ-TRNGM-----EALELARQHKPDVIIMDIQLQEI-SG-------LEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 24 ~~g~~v~~-a~~g~-----eal~~l~~~~~dlillD~~mp~~-dG-------~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
..|+.+.- .-+|. +.-+.+.+.+++++++|+.--.. ++ ..+++.||+ ..+++||++++..
T Consensus 29 ~lg~~viNlG~sG~g~le~~~a~~i~~~~a~~~vi~~g~N~~~~~~~~~~~~~~~V~~ir~--~~p~tPIvlv~~~ 102 (177)
T cd01844 29 RLGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRE--THPDTPILLVSPR 102 (177)
T ss_pred HCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECC
T ss_conf 5499777146675431028899998618998899963467887478999999999999998--7889978998336
No 345
>KOG0781 consensus
Probab=38.50 E-value=35 Score=16.07 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=37.5
Q ss_pred HCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 78989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r 24 TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 24 ~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
..||.-..+.-+.+|++..+.+-||+|++|.-=---|--.|.+.+.........-.|++.+.
T Consensus 444 ekGYgkd~a~vak~AI~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgE 505 (587)
T KOG0781 444 EKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGE 505 (587)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHH
T ss_conf 61047782899999999998669878998354433478067899999974479865998505
No 346
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=38.39 E-value=35 Score=16.06 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=36.8
Q ss_pred CCHHHHHHH---HHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 998999999---99999789899998897------999999982799899995041296959999999828576899599
Q gi|254780476|r 10 DNELNMKLF---RDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 10 D~~~~~~~l---~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+|+...+++ .+.++..||.+..+.++ .++++.+.++.+|-+++-. .+.+--+..+.+++ +.+|+|
T Consensus 10 ~npf~~~~~~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~--~~~~~~~~~~~l~~----~~iPvV 83 (266)
T cd06282 10 ANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTV--ADAATSPALDLLDA----ERVPYV 83 (266)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCHHHHHHHHH----CCCCEE
T ss_conf 688999999999999998799899997999979999999999965998799963--78775599999985----599789
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 81 AV 82 (123)
Q Consensus 81 ~~ 82 (123)
++
T Consensus 84 ~~ 85 (266)
T cd06282 84 LA 85 (266)
T ss_pred EE
T ss_conf 99
No 347
>TIGR02102 pullulan_Gpos pullulanase, extracellular; InterPro: IPR011838 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterised members of this family include a surface-located pullulanase from Streptococcus pneumoniae and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity ..
Probab=38.12 E-value=16 Score=18.06 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=35.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEE
Q ss_conf 987789953998999999999997898999-----9889799999998279989999
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-----QTRNGMEALELARQHKPDVIIM 52 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-----~a~~g~eal~~l~~~~~dlill 52 (123)
|+||||| .-.+.+.+-++--||... -|++-+.|++.+++=.|++|.+
T Consensus 637 MsrR~LV-----DSI~Ylv~efKvDGFRFDMMGDHDA~sI~~Ay~~Ak~iNPN~iMi 688 (1164)
T TIGR02102 637 MSRRVLV-----DSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 688 (1164)
T ss_pred HHHHHHH-----HHHHHHHHHEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 2000233-----334544300000541307876321899999999987318977996
No 348
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=38.09 E-value=35 Score=16.04 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=12.0
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCC
Q ss_conf 9999998285768995999992499899999997699
Q gi|254780476|r 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC 99 (123)
Q Consensus 63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~ 99 (123)
++++.+++ +.+++-++|+.............|.
T Consensus 89 e~L~~L~~----~g~~l~ivTn~~~~~~~~~l~~~gl 121 (214)
T PRK13288 89 ETLQTLKK----QGYKLGIVTTKARDTVEMGLKLTGL 121 (214)
T ss_pred HHHHHHHH----CCCCEEEEECCCHHHHHHHHHHHCC
T ss_conf 99999997----7992677535756999999997222
No 349
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=37.97 E-value=35 Score=16.03 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|+-+++..- ..+|+|... .... ......|.++|+.+|-+++.|.++|++.+..
T Consensus 274 Gi~~vEAma-----~G~PvIa~~-~gG~---~e~v~~g~tG~l~~~~~~~~la~ai~~~~~~ 326 (351)
T cd03804 274 GIVPVEAMA-----SGTPVIAYG-KGGA---LETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CCHHHHHHH-----CCCCEEEEC-CCCC---CCEECCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 975999997-----699889828-9997---5501589978995989999999999999859
No 350
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=37.80 E-value=36 Score=16.01 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=62.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 78995399899999999999789899998-89799999998279989999504129695999999982857689959999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYIALQT-RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a-~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
++.++|.|+...+..+ ..|+.+.-. .+-.+-++.+.-++-.++++-+.=|+ .-.++.+.+|+.. +++||++-
T Consensus 424 ~~vviD~d~~~V~~~r----~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~~-~~~~iv~~~r~~~--P~l~IiaR 496 (615)
T PRK03562 424 KMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ-TNLQLTELVKEHF--PHLQIIAR 496 (615)
T ss_pred CEEEEECCHHHHHHHH----HCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH-HHHHHHHHHHHHC--CCCEEEEE
T ss_conf 8799979999999999----679908976899999998679140688999949899-9999999999758--99869998
Q ss_pred EECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9249989999999769988998798
Q gi|254780476|r 83 TAFAMKGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 83 t~~~~~~~~~~~~~~g~~~~l~KPi 107 (123)
+ ....+..+..+.|++..+.--+
T Consensus 497 a--rd~~~~~~L~~~Ga~~vv~Et~ 519 (615)
T PRK03562 497 A--RDVDHYIRLRQAGVEKPERETF 519 (615)
T ss_pred E--CCHHHHHHHHHCCCCEEECCHH
T ss_conf 3--9778899999789998966658
No 351
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=37.67 E-value=34 Score=16.10 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=58.8
Q ss_pred EECCCHHHHHHHH------------HHHHHCCCEEE----E------ECCHHHHHHHHHHCCCCEEEEEEECCCCCH---
Q ss_conf 9539989999999------------99997898999----9------889799999998279989999504129695---
Q gi|254780476|r 7 IVEDNELNMKLFR------------DLIETSGYIAL----Q------TRNGMEALELARQHKPDVIIMDIQLQEISG--- 61 (123)
Q Consensus 7 iVDD~~~~~~~l~------------~~l~~~g~~v~----~------a~~g~eal~~l~~~~~dlillD~~mp~~dG--- 61 (123)
.|-||....+++. .+|+..|..+. . ..--..|++++.+..||.++++.-||--.-
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~ 197 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMG 197 (275)
T ss_pred ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCC
T ss_conf 12774899999768863777788999999709425305999731685233387889986079973999998138850105
Q ss_pred -------HHHHHHHHH-CCCCCCCCEEEEEECCCHHHHH----HHHHCCCCEEEECCCC
Q ss_conf -------999999982-8576899599999249989999----9997699889987989
Q gi|254780476|r 62 -------LEITKQIKE-DSELQEIPVIAVTAFAMKGDEE----RIRKGGCEAYISKPIS 108 (123)
Q Consensus 62 -------~el~~~ir~-~~~~~~ipii~~t~~~~~~~~~----~~~~~g~~~~l~KPi~ 108 (123)
-|..+-++. ....++ |+++=-+...-..+. .+..+|++ -+++|..
T Consensus 198 ~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~ 254 (275)
T COG1856 198 NSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPR 254 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCC-EEECCCC
T ss_conf 77976989999999999985899-746741476753678788888871885-0445985
No 352
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.60 E-value=36 Score=15.99 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=53.5
Q ss_pred CEEEEECCCHHHHHHH--HHHHH--HCCCEEEEECCHHHHHHHHHHCCCCEEEEEE----ECCCCC---H-----HHHHH
Q ss_conf 7789953998999999--99999--7898999988979999999827998999950----412969---5-----99999
Q gi|254780476|r 3 KKVMIVEDNELNMKLF--RDLIE--TSGYIALQTRNGMEALELARQHKPDVIIMDI----QLQEIS---G-----LEITK 66 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l--~~~l~--~~g~~v~~a~~g~eal~~l~~~~~dlillD~----~mp~~d---G-----~el~~ 66 (123)
+|+|.|--++...++= .+-|. ..+..+....+-++-++.+.+.+|+++++|- ..|+++ | -|.+.
T Consensus 121 ~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~ 200 (456)
T COG1066 121 GKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAA 200 (456)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHH
T ss_conf 95799967767899999999828996455774112899999999854997899965412302633579985899999999
Q ss_pred HHHHCCCCCCCCEEEE
Q ss_conf 9982857689959999
Q gi|254780476|r 67 QIKEDSELQEIPVIAV 82 (123)
Q Consensus 67 ~ir~~~~~~~ipii~~ 82 (123)
.+.+....++++++++
T Consensus 201 ~L~~~AK~~~i~~fiV 216 (456)
T COG1066 201 ELMRLAKTKNIAIFIV 216 (456)
T ss_pred HHHHHHHHCCCEEEEE
T ss_conf 9999998759739999
No 353
>PRK07589 ornithine cyclodeaminase; Validated
Probab=37.60 E-value=36 Score=15.99 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=35.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf 77899539989999999999978989999889799999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE 40 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~ 40 (123)
++|.+.+=|+...+.+.+-++..|+.+..+.|.++|.+
T Consensus 155 ~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~s~~eAv~ 192 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVRCRSVAEAVE 192 (346)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 68999828879999999998726980899499999972
No 354
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.52 E-value=36 Score=15.98 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=31.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 987789953998999999999997898999988979999
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL 39 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal 39 (123)
|.|||||..--+..+++++. ++.+|+......+..++.
T Consensus 1 M~~kvLIANRGEIA~RiiRt-~~elgi~tVavys~~D~~ 38 (449)
T PRK08591 1 MFDKILIANRGEIALRILRA-CKELGIKTVAVHSTADRD 38 (449)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCCEEEECCHHHCC
T ss_conf 96448896784999999999-998499499986857527
No 355
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=37.40 E-value=36 Score=15.97 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 89959999924998999999976998899879898999999999740
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
..+|||.. .... ..+....|.++||..| +.++|.+++.+.+.
T Consensus 322 ~G~PVVas-d~gG---~~E~I~~g~~G~Lv~~-d~~~la~~i~~ll~ 363 (392)
T cd03805 322 AGKPVIAC-NSGG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAN 363 (392)
T ss_pred CCCCEEEE-CCCC---CHHHEECCCEEEEECC-CHHHHHHHHHHHHC
T ss_conf 79999994-8998---6766457966999595-99999999999978
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.33 E-value=36 Score=15.97 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=64.1
Q ss_pred EE-EEECCC--HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEE-CCCCCHHH---HHHHHHHCCCCC
Q ss_conf 78-995399--899999999999789899998897999999982-79989999504-12969599---999998285768
Q gi|254780476|r 4 KV-MIVEDN--ELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQ-LQEISGLE---ITKQIKEDSELQ 75 (123)
Q Consensus 4 ki-LiVDD~--~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~-mp~~dG~e---l~~~ir~~~~~~ 75 (123)
|| ||-=|+ .-..+.++.+-.-.|.-+.++.+..+--+.+.+ ...|+||+|.- +...|... +-..++..+ .
T Consensus 242 kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~--~ 319 (412)
T PRK05703 242 KVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDLILIDTAGRSQRDPRLISELKALIENSK--P 319 (412)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC--C
T ss_conf 17999837677779999999999719737984799999999987158997999689889789999999999986248--8
Q ss_pred CCCEEEEEECCCHHHHHHHH----HCCCCEEEECCC
Q ss_conf 99599999249989999999----769988998798
Q gi|254780476|r 76 EIPVIAVTAFAMKGDEERIR----KGGCEAYISKPI 107 (123)
Q Consensus 76 ~ipii~~t~~~~~~~~~~~~----~~g~~~~l~KPi 107 (123)
.-..+++|+.....+..... ..|+++++.-=+
T Consensus 320 ~~~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~TKl 355 (412)
T PRK05703 320 IDVYLVLSATTKYRDLKDIVKHFSRLPLDGLILTKL 355 (412)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 718999759899899999999846799987999711
No 357
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.03 E-value=37 Score=15.94 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=37.0
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH-HHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99998279989999504129695999999982857689959999924998999-99997699889987989899999999
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~-~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
++.+..-.||+|+....... ......+.+. ..+|++.+.....-++. ......| ..+-|+=+.+++.+.++
T Consensus 67 ~E~i~al~PDlVi~~~~~~~---~~~~~~~~~~---~gip~v~~~~~~~~~~~~~~i~~lg--~i~g~e~~A~~l~~~~~ 138 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDP---TSIADDLQKK---TGIPVVVLDGGDSLEDTPEQIRLLG--KVLGKEERAEELISFIE 138 (262)
T ss_pred HHHHHCCCCCEEEEECCCCC---HHHHHHHHHH---HCCCEEECCCCCCHHHHHHHHHHHH--HHHCCHHHHHHHHHHHH
T ss_conf 99996069988998467770---6789999998---7997897489999999999999999--99696478999999999
Q ss_pred HHH
Q ss_conf 974
Q gi|254780476|r 118 KYI 120 (123)
Q Consensus 118 ~~l 120 (123)
+.+
T Consensus 139 ~~~ 141 (262)
T cd01147 139 SIL 141 (262)
T ss_pred HHH
T ss_conf 999
No 358
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=36.89 E-value=37 Score=15.93 Aligned_cols=88 Identities=9% Similarity=0.161 Sum_probs=54.3
Q ss_pred CEEE-EECCCHH---HHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 7789-9539989---999999999978989999-------8897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVM-IVEDNEL---NMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiL-iVDD~~~---~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
|||- +.+|++. ..+.++..++..|.++.. ..+-...+..++...||+|++-. ..-++..+++++|+.
T Consensus 137 kkvavl~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~--~~~~~~~~~~q~~~~ 214 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVG--AYKAAAAFIRALRKA 214 (336)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf 759999358758899999999999977993799998689987779999999847979999927--827999999999976
Q ss_pred CCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 57689959999924998999999
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
. -+.|++..+...........
T Consensus 215 G--~~~~~~~~~~~~~~~~~~~~ 235 (336)
T cd06326 215 G--GGAQFYNLSFVGADALARLL 235 (336)
T ss_pred C--CCCEEEEECCCCHHHHHHHH
T ss_conf 9--99759985677739999976
No 359
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=36.78 E-value=37 Score=15.92 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=42.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf 8995399899999999999789899998-------897999999982799899995041296959
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGL 62 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~ 62 (123)
|||.=.+-..-..+++.|. -++++... .+.....+.+++.+||+|+=---+...|+.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~a 66 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKA 66 (281)
T ss_pred EEEECCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 8997698767999999717-784399515765555685899999986199989987320365413
No 360
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.75 E-value=37 Score=15.91 Aligned_cols=94 Identities=6% Similarity=0.013 Sum_probs=54.2
Q ss_pred EEEEECCCHHHHHHHHHHH----HHCC-CE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 7899539989999999999----9789-89-9998897999999982799899995041296959999999828576899
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLI----ETSG-YI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l----~~~g-~~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
.|||=|+.-....-+...+ +..+ .. ..++.|-+++.+.+.. .+|.|++|=.-|+ +=-+..+.++.. ..-
T Consensus 171 ~iLIKdNHi~~~g~i~~ai~~~r~~~~~~kIeVEv~sl~q~~ea~~~-gaDiImLDNms~e-~~~~av~~~~~~---~~~ 245 (288)
T PRK07896 171 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE-GAELILLDNFPVW-QTQEAVQRRDAR---APT 245 (288)
T ss_pred EEEEEHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-CCCEEEECCCCHH-HHHHHHHHHHCC---CCC
T ss_conf 28986214653086999999999858996199997979999998746-9999997799999-999999998376---987
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 5999992499899999997699889
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+.+-.||.-..+...+..+.|++.+
T Consensus 246 v~lEaSGgI~~~ni~~yA~tGVD~I 270 (288)
T PRK07896 246 VLLESSGGLTLDTAAAYAATGVDYL 270 (288)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 4899988999999999996599999
No 361
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=36.75 E-value=37 Score=15.91 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCEEEEECCCHHH---HHHHHHHHHHCCCEEEEECC
Q ss_conf 8778995399899---99999999978989999889
Q gi|254780476|r 2 LKKVMIVEDNELN---MKLFRDLIETSGYIALQTRN 34 (123)
Q Consensus 2 ~kkiLiVDD~~~~---~~~l~~~l~~~g~~v~~a~~ 34 (123)
.+|||||||=-.+ .+...++++..|-+|..+..
T Consensus 114 g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aF 149 (175)
T TIGR01090 114 GQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAF 149 (175)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 890899832201267899999999985961687455
No 362
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=36.67 E-value=37 Score=15.90 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=38.5
Q ss_pred CHHHHHH---HHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEE---ECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 9899999---999999789899998897------9999999827998999950---412969599999998285768995
Q gi|254780476|r 11 NELNMKL---FRDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDI---QLQEISGLEITKQIKEDSELQEIP 78 (123)
Q Consensus 11 ~~~~~~~---l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~---~mp~~dG~el~~~ir~~~~~~~ip 78 (123)
|+...++ +.+.+...||.+..+.++ .++++.+.+..+|-+++.- ..+.. ..+.++++++ .++|
T Consensus 11 n~ff~~~~~gi~~~~~~~gy~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~-~~~~~~~l~~----~~iP 85 (273)
T cd01541 11 DYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNP-NIDLYLKLEK----LGIP 85 (273)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHH----CCCC
T ss_conf 5799999999999999869989999789998999999999996599989992531035787-7799999997----6998
Q ss_pred EEEEEE
Q ss_conf 999992
Q gi|254780476|r 79 VIAVTA 84 (123)
Q Consensus 79 ii~~t~ 84 (123)
+|++..
T Consensus 86 vV~i~~ 91 (273)
T cd01541 86 YVFINA 91 (273)
T ss_pred EEEEEC
T ss_conf 999956
No 363
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.49 E-value=37 Score=15.89 Aligned_cols=67 Identities=16% Similarity=0.344 Sum_probs=34.8
Q ss_pred CCHHHHHHH---HHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 998999999---999997898999988979------99999982799899995041296959999999828576899599
Q gi|254780476|r 10 DNELNMKLF---RDLIETSGYIALQTRNGM------EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 10 D~~~~~~~l---~~~l~~~g~~v~~a~~g~------eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+|+...+++ .+.+...||.+..+.+.. +.++.+.+..+|-|++-. +..+. ...+.+++ .++|+|
T Consensus 10 ~npf~~~l~~gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~--~~~~~-~~~~~l~~----~~iPvV 82 (270)
T cd06296 10 DSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVT--PELTS-AQRAALRR----TGIPFV 82 (270)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCH-HHHHHHHH----CCCCEE
T ss_conf 539999999999999998499899997999969999999999954999999906--88999-99999997----499999
Q ss_pred EEE
Q ss_conf 999
Q gi|254780476|r 81 AVT 83 (123)
Q Consensus 81 ~~t 83 (123)
++.
T Consensus 83 ~id 85 (270)
T cd06296 83 VVD 85 (270)
T ss_pred EEC
T ss_conf 987
No 364
>PRK06101 short chain dehydrogenase; Provisional
Probab=36.46 E-value=37 Score=15.88 Aligned_cols=57 Identities=9% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 877899539989999999999978989999889799999998279989999504129
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~ 58 (123)
||+|||.=-..-.=+.+...|...|+.|..+.--++.++.+.++..++..+.....+
T Consensus 1 MktvlITGassGIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd 57 (241)
T PRK06101 1 MTSVLITGATSGIGKQLALDYAKAGWKVIACGRNEAVLDELHDQSSNIFTLAFDVTD 57 (241)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 998999224049999999999987998999989999999999732880489852267
No 365
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.42 E-value=37 Score=15.88 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|.-+++..- ..+|||.-...+. .+.....|.++|+.+|-+.+.|.+.|.+.+.+
T Consensus 279 g~~~lEAma-----~G~PVVat~~gg~---~~~i~~~~~~G~l~~~~d~~~l~~~i~~ll~~ 332 (357)
T cd03795 279 GIVLLEAMA-----FGKPVISTEIGTG---GSYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CHHHHHHHH-----CCCCEEEECCCCC---HHHHEECCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 667999998-----7998999359998---15605569579997899999999999999779
No 366
>PRK13173 consensus
Probab=36.41 E-value=37 Score=15.88 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=40.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf 8778995399899999999999789899998897999999982799899995041296959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~ 62 (123)
|+||.|+|=-.-+..-+...|+..|+++....+..+- ..+|.++ +|+..-|
T Consensus 1 M~kI~IiDyg~gNi~Sv~~al~~lg~~~~i~~~~~~i------~~~d~lI----LPGVGsF 51 (211)
T PRK13173 1 MTKIALLDYGMGNLHSASKALSAVGAEVSITNDPKVI------AAADKIV----FPGVGAM 51 (211)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHH------HHCCEEE----ECCCCCH
T ss_conf 9879999689449999999999869988996799998------4389689----7577868
No 367
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=36.34 E-value=38 Score=15.87 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=32.7
Q ss_pred HHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 999827998999950412-----9695999999982857689959999924998999999
Q gi|254780476|r 40 ELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 40 ~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
+.+.+..+|+++||=-+. -++--++.+-|++.|...+ +++|+...+......
T Consensus 89 ~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~e---vVlTGr~~p~~L~e~ 145 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLE---LVLTGRNAPKELIEA 145 (159)
T ss_pred HHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf 998688989997366899998599179999999984899978---999699999999985
No 368
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=36.27 E-value=38 Score=15.87 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHH----HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 9877899539989999999999978989999-88979----999999827998999950412969599999998285768
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGM----EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQ 75 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~----eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~ 75 (123)
|+.+|.++=|..+.. .|.-.|+.... +++++ ++++.+.+..+++|++.-.+- -.+-+.+|+....+
T Consensus 1 ~~~~I~VIGd~dtv~-----GFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~IIiite~~a----~~i~~~i~~~~~~~ 71 (104)
T COG1436 1 MMMKIAVIGDRDTVT-----GFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDLA----EKIREEIRRIIRSS 71 (104)
T ss_pred CCEEEEEEECCCHHH-----CEEEECCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEHHHH----HHHHHHHHHHHHCC
T ss_conf 951899997601302-----046604236798458057899999861348812999827887----65689999876416
Q ss_pred CCCEEEEEEC
Q ss_conf 9959999924
Q gi|254780476|r 76 EIPVIAVTAF 85 (123)
Q Consensus 76 ~ipii~~t~~ 85 (123)
..|.++.-.+
T Consensus 72 ~~P~iv~IPs 81 (104)
T COG1436 72 VLPAIVEIPS 81 (104)
T ss_pred CCCEEEEECC
T ss_conf 8657999379
No 369
>PRK06904 replicative DNA helicase; Validated
Probab=36.00 E-value=38 Score=15.84 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHC-CCCEEEEEEE--CC--CCCH------HHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 827-9989999504--12--9695------999999982857689959999924
Q gi|254780476|r 43 RQH-KPDVIIMDIQ--LQ--EISG------LEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 43 ~~~-~~dlillD~~--mp--~~dG------~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
+++ ..++|++|+- |+ +..+ -++.+.+|....--++|||+++=-
T Consensus 330 ~~~~~l~~vvIDYLqL~~~~~~~~~r~~ei~~isr~LK~lAkel~ipvi~LsQL 383 (472)
T PRK06904 330 RENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALSQL 383 (472)
T ss_pred HHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 873899789963886604888777788999999999999999979988997326
No 370
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=35.94 E-value=38 Score=15.84 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=39.0
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHH-HHHHHHCCCCCCCCEE-EEEECCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99998279989999504129695999-9999828576899599-9992499899999997699889987
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEI-TKQIKEDSELQEIPVI-AVTAFAMKGDEERIRKGGCEAYISK 105 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el-~~~ir~~~~~~~ipii-~~t~~~~~~~~~~~~~~g~~~~l~K 105 (123)
.+++++++||+|+.=.-+|- .+ +..+|+.....++|++ ++|.+.. ........+++.|+.-
T Consensus 82 ~~~i~~~~PD~IV~Thp~~~----~~~l~~lk~~~~~~~~p~~tViTD~~~--~H~~W~~~~~D~y~Va 144 (169)
T pfam06925 82 AALLKEFQPDIIISTHPLPA----AVPLSVLKSKGLLKRVLVVTVVTDFRT--CHPFWLHPEIDRYYVP 144 (169)
T ss_pred HHHHHHHCCCEEEECCHHHH----HHHHHHHHHCCCCCCCCEEEEECCCCC--CCCCCCCCCCCEEEEC
T ss_conf 99999849399999976266----789999998387889978999898866--6578168999989979
No 371
>PRK07579 hypothetical protein; Provisional
Probab=35.93 E-value=38 Score=15.84 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=23.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE
Q ss_conf 877899539989999999999978989
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYI 28 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~ 28 (123)
|+|||++-||....+.++.+..+-+..
T Consensus 1 ~~kil~~~dn~~~~~~~~~l~~~~~~~ 27 (245)
T PRK07579 1 MKKILVVTDNRTILSDFKNLIGSKNDV 27 (245)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 954999953588999999985799864
No 372
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.67 E-value=38 Score=15.81 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=63.8
Q ss_pred CCEEEEEC-C-CH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 87789953-9-98---99999999999789899998-------8979999999827998999950412969599999998
Q gi|254780476|r 2 LKKVMIVE-D-NE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK 69 (123)
Q Consensus 2 ~kkiLiVD-D-~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir 69 (123)
.||+-++- + +. ...+.++..++..|.++... .+-...+..++...||+|++-.. ..++..++++.|
T Consensus 135 ~~~vai~~~~~~~y~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~i~~i~~~~pD~v~~~~~--~~~~~~~~~q~~ 212 (334)
T cd06347 135 AKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGY--YTEVGLIAKQAR 212 (334)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHH
T ss_conf 878999984696687999999999999759748999715888887699999998659999999366--167999999999
Q ss_pred HCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHH
Q ss_conf 285768995999992499899999997699889987989-------8999999999740
Q gi|254780476|r 70 EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS-------LSIFMETIKKYIG 121 (123)
Q Consensus 70 ~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-------~~~L~~~i~~~l~ 121 (123)
+.. -+.|++..++...+......-+..-.-+..-|+. ...|.+..++..+
T Consensus 213 ~~G--~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~f~~~~~~~~g 269 (334)
T cd06347 213 ELG--IKVPILGGDGWDSPKLEEAGGAAAEGVYFTTHFSADDPTPKAKKFVKAYKAKYG 269 (334)
T ss_pred HCC--CCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 769--977699744668766776507875887999527866774668999999999978
No 373
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=35.60 E-value=39 Score=15.80 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=52.9
Q ss_pred CEE-EEECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 778-9953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r 3 KKV-MIVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kki-LiVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
||+ +|..|.. ...+.++..++..|.++... .+-...+..++...||+|++- +.+-++..+.++.++.
T Consensus 134 kkv~~i~~dy~~g~~~~~~~~~~~~~~G~eVv~e~~~p~g~~Dfs~~l~kI~~a~pD~V~~~--~~g~~~~~f~rq~~~~ 211 (374)
T TIGR03669 134 KKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSM--LVGANHASFYEQAASA 211 (374)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHC
T ss_conf 94899963664147899999999986698899999668999668999999986799999990--5587479999999974
Q ss_pred CCCCCCCEEEEEEC
Q ss_conf 57689959999924
Q gi|254780476|r 72 SELQEIPVIAVTAF 85 (123)
Q Consensus 72 ~~~~~ipii~~t~~ 85 (123)
. -++|+...++.
T Consensus 212 G--l~~p~~~~~~~ 223 (374)
T TIGR03669 212 N--LNLPMGTSTAM 223 (374)
T ss_pred C--CCCCCCCEEEE
T ss_conf 9--99863220232
No 374
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=35.41 E-value=39 Score=15.79 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=52.2
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 778995-3998---9999999999978989999-------8897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVMIV-EDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiLiV-DD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
||+-++ +|++ ...+.++..++..|.++.. ..+-..-+..++...||+|++- ....++..++++.|+.
T Consensus 142 k~vaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pd~i~~~--~~~~~~~~~~~q~~~~ 219 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVA--GHFPDAVLLVRQMKEL 219 (345)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHC
T ss_conf 68999964863036899999999986597499999717987658999999986799999990--7771599999999976
Q ss_pred CCCCCCCEEEEEECC
Q ss_conf 576899599999249
Q gi|254780476|r 72 SELQEIPVIAVTAFA 86 (123)
Q Consensus 72 ~~~~~ipii~~t~~~ 86 (123)
.- ..|++..+...
T Consensus 220 G~--~~~~~~~~~~~ 232 (345)
T cd06338 220 GY--NPKALYMTVGP 232 (345)
T ss_pred CC--CCCEEEEECCC
T ss_conf 99--98889984466
No 375
>LOAD_USPA consensus
Probab=34.77 E-value=40 Score=15.73 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=7.8
Q ss_pred CEEEE-ECCCHHHHHHHHH
Q ss_conf 77899-5399899999999
Q gi|254780476|r 3 KKVMI-VEDNELNMKLFRD 20 (123)
Q Consensus 3 kkiLi-VDD~~~~~~~l~~ 20 (123)
||||+ +|.++.....++.
T Consensus 1 k~Ilv~vd~s~~s~~a~~~ 19 (135)
T LOAD_USPA 1 KKILVAIDGSPESEKALRW 19 (135)
T ss_pred CEEEEEECCCHHHHHHHHH
T ss_conf 9899998699899999999
No 376
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.66 E-value=40 Score=15.72 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCEEEEECCCHH------HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC--------------------EEEEEE
Q ss_conf 9877899539989------99999999997898999988979999999827998--------------------999950
Q gi|254780476|r 1 MLKKVMIVEDNEL------NMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--------------------VIIMDI 54 (123)
Q Consensus 1 m~kkiLiVDD~~~------~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~d--------------------lillD~ 54 (123)
|+-|+|++=..|. ..-.++.-|+..||.|..+++. .|+++++--.|| .+++--
T Consensus 1 mtgkvlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate-Aa~kLlevaD~ek~Y~de~vdlek~~ed~ie~~~~la~ 79 (148)
T COG4081 1 MTGKVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE-AALKLLEVADPEKYYVDETVDLEKYLEDPIEGGILLAA 79 (148)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECCH-HHHEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHEEEE
T ss_conf 97428998059999852047898887763058517996287-66210554276640544101187752225743203777
Q ss_pred ECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHHCC
Q ss_conf 41296959999999828576899599999249989999999769988998798-9899999999974039
Q gi|254780476|r 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGEA 123 (123)
Q Consensus 55 ~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~~~l~~a 123 (123)
-+++-.|...+-.++...+.....|| + +..-++..+++....+.-+..+-+ +|..+..+|.++|+.+
T Consensus 80 FvhNDag~~yavT~ka~sn~~~~aiV-f-gr~~~d~leet~~lda~v~~ar~~HnP~rlvnrid~il~~~ 147 (148)
T COG4081 80 FVHNDAGLQYAVTLKAVSNPDTYAIV-F-GREAEDRLEETGFLDAEVIGARAKHNPKRLVNRIDDILEAS 147 (148)
T ss_pred EECCCCCHHHHHHHHHHCCCCCEEEE-E-CCHHHHHHHHHHCCCCCEEEEHHCCCCHHHHHHHHHHHHCC
T ss_conf 85387423122215654388646654-1-53667899987237650365310158388999999997325
No 377
>PRK06321 replicative DNA helicase; Provisional
Probab=34.53 E-value=40 Score=15.70 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=34.5
Q ss_pred HHHHHCCCEEEEECC--HHH----HHHHHHHCCCCEEEEEEE--CCCC----CH------H-HHHHHHHHCCCCCCCCEE
Q ss_conf 999978989999889--799----999998279989999504--1296----95------9-999999828576899599
Q gi|254780476|r 20 DLIETSGYIALQTRN--GME----ALELARQHKPDVIIMDIQ--LQEI----SG------L-EITKQIKEDSELQEIPVI 80 (123)
Q Consensus 20 ~~l~~~g~~v~~a~~--g~e----al~~l~~~~~dlillD~~--mp~~----dG------~-el~~~ir~~~~~~~ipii 80 (123)
.-+..+.+.+....+ -.+ +..+-+.+..++|++|+- |... ++ + ++.+.+|....--++|||
T Consensus 304 ~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vvIDYlqL~~~~~~~~~~~~r~~~i~~isr~lK~lAkel~vpvi 383 (472)
T PRK06321 304 NEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGTLRNSESRQTEISEISRMLKNLARELNIPIL 383 (472)
T ss_pred HHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99854875786799998999999999998738998799972774167777777888999999999999999999799799
Q ss_pred EEEEC
Q ss_conf 99924
Q gi|254780476|r 81 AVTAF 85 (123)
Q Consensus 81 ~~t~~ 85 (123)
+++=-
T Consensus 384 ~LsQL 388 (472)
T PRK06321 384 CLSQL 388 (472)
T ss_pred EECCC
T ss_conf 97226
No 378
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=34.53 E-value=40 Score=15.70 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=55.9
Q ss_pred EEEEECCCHHHHH----HHHHHHHHCC--CE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 7899539989999----9999999789--89-999889799999998279989999504129695999999982857689
Q gi|254780476|r 4 KVMIVEDNELNMK----LFRDLIETSG--YI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76 (123)
Q Consensus 4 kiLiVDD~~~~~~----~l~~~l~~~g--~~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ 76 (123)
.|||=|+.-.... .++..=+..+ .. ..++.|-+|+.+.+... +|.|++|= |+=-++-+.++......+
T Consensus 153 ~iLikdNHi~~~g~~~~av~~~r~~~~~~~kIeVEv~tl~ea~~a~~~g-~D~I~LDn----~~~~~~~~~v~~~~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAG-ADIIMLDN----MSPEELKEAVKLLKGLPR 227 (269)
T ss_pred EEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC-CCEEEECC----CCHHHHHHHHHHHCCCCC
T ss_conf 2898050686738999999999986899843999949899999999769-99999879----899999999998477998
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 959999924998999999976998899
Q gi|254780476|r 77 IPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 77 ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
..+-.||.-..+...+..+.|++.+-
T Consensus 228 -v~ieaSGgI~~~ni~~ya~~GvD~Is 253 (269)
T cd01568 228 -VLLEASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred -EEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf -59999899999999999975999999
No 379
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=34.27 E-value=38 Score=15.82 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 99999999978989999889799999998279989999504129695999999982857689959999924998
Q gi|254780476|r 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK 88 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~ 88 (123)
..-+++.|+..||+|..-.+..++ ..+|++++--.=.++=|++ + .....|||=-+|..-+
T Consensus 10 Ls~v~e~L~~~Gy~Vv~l~~~~~~------~~~da~VitG~d~N~mGi~-------d-~~t~~pVI~A~G~Tae 69 (80)
T pfam03698 10 LSNIEEALKEKGYEVVRLKNEQDA------QGCDACVVTGLDSNMMGIE-------D-TVTKAPVIDASGLTAE 69 (80)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCCCC-------C-CCCCCCEEECCCCCHH
T ss_conf 259999999779878867870325------6658899958986521441-------3-3456874866899999
No 380
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=34.18 E-value=41 Score=15.67 Aligned_cols=86 Identities=22% Similarity=0.404 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCCEEEEECC---HHHHHHHHHHCCCCEEEEEEECCC-CCH-HHHHHHHHHCCCCCCCCEEEE-EECCCH
Q ss_conf 99999999978989999889---799999998279989999504129-695-999999982857689959999-924998
Q gi|254780476|r 15 MKLFRDLIETSGYIALQTRN---GMEALELARQHKPDVIIMDIQLQE-ISG-LEITKQIKEDSELQEIPVIAV-TAFAMK 88 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~~a~~---g~eal~~l~~~~~dlillD~~mp~-~dG-~el~~~ir~~~~~~~ipii~~-t~~~~~ 88 (123)
-.++..+|+..||++.--.+ .++..+.+++++||+|-+.-.|-. |-| -++..++++. ..++ |++.+ -+..-.
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~ee-GiRd-~v~v~vGGApvt 198 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEE-GIRD-KVIVMVGGAPVT 198 (227)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHC-CCCC-CEEEEECCCCCC
T ss_conf 99999999837957874389998799999999728756640687788799799999999976-8854-748852686246
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999999769988998
Q gi|254780476|r 89 GDEERIRKGGCEAYIS 104 (123)
Q Consensus 89 ~~~~~~~~~g~~~~l~ 104 (123)
.+. +-+.|++.|-.
T Consensus 199 q~~--a~~iGAD~~~~ 212 (227)
T COG5012 199 QDW--ADKIGADAYAE 212 (227)
T ss_pred HHH--HHHHCCCCCCC
T ss_conf 899--99718775676
No 381
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822 This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=33.82 E-value=41 Score=15.63 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHH------CCCE----EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98999999999997------8989----9998897999999982799899995041296959999999828576899599
Q gi|254780476|r 11 NELNMKLFRDLIET------SGYI----ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 11 ~~~~~~~l~~~l~~------~g~~----v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+...|++++++|.. +|-. -...++--+-++++..++ =||+.=-|-+==|+.|++. .-+-+|||
T Consensus 302 e~~qR~Vl~~vl~~iD~YDLYGkvAyPK~H~~~dvP~lYRLAA~~r--GiFVNPALTEPFGLTLlEA-----AAcGLPiv 374 (445)
T TIGR02472 302 ESSQREVLTEVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARRR--GIFVNPALTEPFGLTLLEA-----AACGLPIV 374 (445)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC--CEEECCCCCCCCHHHHHHH-----HHCCCCEE
T ss_conf 1578999999987630002456402688888112326789998659--8676272125301689999-----97699721
Q ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9992499899999997699889987989899999999974039
Q gi|254780476|r 81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 (123)
Q Consensus 81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a 123 (123)
+ |.-+.+.+...-. -|+-|.=|.+.+.+-.++.+++.++
T Consensus 375 A-T~DGGP~dI~~~C---~NGLLvd~ld~e~i~~AL~~alsd~ 413 (445)
T TIGR02472 375 A-TEDGGPRDIIANC---RNGLLVDVLDLEAIASALEQALSDS 413 (445)
T ss_pred E-CCCCCCHHHHHHC---CCCCEECCCCHHHHHHHHHHHCCCH
T ss_conf 0-7864866888428---8875005789899999999733890
No 382
>pfam07537 CamS CamS sex pheromone cAM373 precursor. This family includes CamS, from which Staphylococcus aureus sex pheromone staph-cAM373 is processed.
Probab=33.79 E-value=37 Score=15.88 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=17.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999999982857689959999
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~ 82 (123)
-+++++||+...++++||.+-
T Consensus 150 ~~il~rlR~~~~lk~vPI~ia 170 (318)
T pfam07537 150 QEVLNRIRQNDNLKNVPITFA 170 (318)
T ss_pred HHHHHHHHHCCCCCCCCEEEE
T ss_conf 999999984168788897999
No 383
>PRK07004 replicative DNA helicase; Provisional
Probab=33.69 E-value=42 Score=15.62 Aligned_cols=68 Identities=28% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHHCCCEEEEEC--CHHHHHH---HH-HH-CCCCEEEEEEE--CCCCC-H-------HHHHHHHHHCCCCCCCCEEE
Q ss_conf 999997898999988--9799999---99-82-79989999504--12969-5-------99999998285768995999
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGMEALE---LA-RQ-HKPDVIIMDIQ--LQEIS-G-------LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~eal~---~l-~~-~~~dlillD~~--mp~~d-G-------~el~~~ir~~~~~~~ipii~ 81 (123)
...+..+.+.+.... +..+-.. .+ ++ +..++|++|+- |+..+ | -++.+.+|....--++|||+
T Consensus 290 ~~~l~~~~l~IdD~~~lt~~~ira~~Rr~~~~~g~l~lvviDYlqli~~~~~~~~r~~ei~~isr~lK~lAkel~ipvi~ 369 (460)
T PRK07004 290 VQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 369 (460)
T ss_pred HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99985597489689873078999999999974358889985077544788888889999999999999999996997899
Q ss_pred EEECC
Q ss_conf 99249
Q gi|254780476|r 82 VTAFA 86 (123)
Q Consensus 82 ~t~~~ 86 (123)
++--+
T Consensus 370 lsQLn 374 (460)
T PRK07004 370 LSQLN 374 (460)
T ss_pred ECCCC
T ss_conf 70468
No 384
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.65 E-value=42 Score=15.62 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 99999827998999950412-----9695999999982857689959999924998999999
Q gi|254780476|r 38 ALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 38 al~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
|.+.+.+..+|++++|=-.. -.+-=++.+-|++.|...+ +++|+..-+......
T Consensus 107 a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~e---vVLTGR~ap~eLie~ 165 (178)
T PRK07414 107 TQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVD---VILTGPEMPESLLAI 165 (178)
T ss_pred HHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf 99998688988899703689987699259999999981899988---999699999999998
No 385
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.64 E-value=42 Score=15.62 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=32.2
Q ss_pred HHHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 9998279989999504129-----695999999982857689959999924998999999
Q gi|254780476|r 40 ELARQHKPDVIIMDIQLQE-----ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 40 ~~l~~~~~dlillD~~mp~-----~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
+.+.+..+|+++||=-+.- ++--++..-|++.|...+ +++|+..-+......
T Consensus 108 ~~l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~rp~~~e---vVLTGR~~p~~L~e~ 164 (190)
T PRK05986 108 RMLADESYDLVVLDELTYALKYGYLDLEEVLEALNNRPGMQH---VVITGRGAPRELIEA 164 (190)
T ss_pred HHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf 998588888895376799985599589999999982899876---999799999999986
No 386
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=33.28 E-value=42 Score=15.58 Aligned_cols=97 Identities=19% Similarity=0.088 Sum_probs=55.9
Q ss_pred EEEECCCHH----HHHHHHHHHHHC-CCEEEEEC--CHHHHHHHHHHCCCCEEEEEEECCCCC-------HHHHHHHHHH
Q ss_conf 899539989----999999999978-98999988--979999999827998999950412969-------5999999982
Q gi|254780476|r 5 VMIVEDNEL----NMKLFRDLIETS-GYIALQTR--NGMEALELARQHKPDVIIMDIQLQEIS-------GLEITKQIKE 70 (123)
Q Consensus 5 iLiVDD~~~----~~~~l~~~l~~~-g~~v~~a~--~g~eal~~l~~~~~dlillD~~mp~~d-------G~el~~~ir~ 70 (123)
|.+.+..+. ..+.++...+.+ +..+.... +....-..+.+.--|.+.++.....-. .++++.++++
T Consensus 88 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (200)
T cd04722 88 VEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR 167 (200)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99789996543006899999998448964999689999999999998099799970874678887666116899999998
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 8576899599999249989999999769988998
Q gi|254780476|r 71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
..++||++-.+.....+..++...|+++++.
T Consensus 168 ---~~~ipvi~~gGi~~~~~~~~~~~~gAdgv~v 198 (200)
T cd04722 168 ---GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred ---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf ---5799989975879999999999859988981
No 387
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=33.27 E-value=42 Score=15.58 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=58.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHH--HHHCCCCEEEEEEECCCCCH-HHHHHHHHHCCCCCC
Q ss_conf 877899539989999999999978989--9998897999999--98279989999504129695-999999982857689
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALEL--ARQHKPDVIIMDIQLQEISG-LEITKQIKEDSELQE 76 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~--l~~~~~dlillD~~mp~~dG-~el~~~ir~~~~~~~ 76 (123)
.++|.=||-++...+..+...+..|.. ...+.+..+.+.. ...++||+|++| |--.| -++++.|-+. +.
T Consensus 316 ~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~vi~D---PPR~G~~~~i~~l~~~---~p 389 (440)
T PRK13168 316 AAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKVLLD---PPRAGAFEVMQALAKL---KP 389 (440)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEC---CCCCCHHHHHHHHHHC---CC
T ss_conf 67688760579999999999997499987899746456635578637999989999---8852789999999847---98
Q ss_pred CCEEEEEECCC--HHHHHHHHHCCCCEEEECCC
Q ss_conf 95999992499--89999999769988998798
Q gi|254780476|r 77 IPVIAVTAFAM--KGDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 77 ipii~~t~~~~--~~~~~~~~~~g~~~~l~KPi 107 (123)
-.||-+|=... .-|.....+.|..=-=..|+
T Consensus 390 ~~IvYVSCnPaTlARDl~~L~~~GY~l~~i~~v 422 (440)
T PRK13168 390 KRIVYVSCNPATLARDAGVLVEAGYRLKRAGVL 422 (440)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 979999389899999999998789489599996
No 388
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=33.23 E-value=42 Score=15.58 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 97699889987989899999999974
Q gi|254780476|r 95 RKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 95 ~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
.+.|.++|+..|-+.+.|.++|.+++
T Consensus 303 v~~~~~G~lv~~~d~~~la~ai~~ll 328 (365)
T cd03825 303 VDHGVTGYLAKPGDPEDLAEGIEWLL 328 (365)
T ss_pred HCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 60798279979999999999999998
No 389
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=33.23 E-value=42 Score=15.58 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=44.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEE------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHCCCC
Q ss_conf 877899539989999999999978989999------889799999998279989999504129695999999-9828576
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQ------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ-IKEDSEL 74 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~-ir~~~~~ 74 (123)
.++|+-+||..... +......+.. ..+-.++++...++.||+|++. ++-+.|.+.. ++.. ..
T Consensus 30 ~~~IiTiEDPiE~~------~~~~~~~i~q~e~g~~~~sf~~~lr~aLR~~PDvI~vG----EiRd~et~~~al~aa-~T 98 (198)
T cd01131 30 THHILTIEDPIEFV------HESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG----EMRDLETIRLALTAA-ET 98 (198)
T ss_pred CCEEEEECCCHHHH------CCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECC----CCCCHHHHHHHHHHH-HC
T ss_conf 83699964737752------36764488733307886379999999985488857527----778999999999999-71
Q ss_pred CCCCEEE-EEECCCHHHHHHHHHC
Q ss_conf 8995999-9924998999999976
Q gi|254780476|r 75 QEIPVIA-VTAFAMKGDEERIRKG 97 (123)
Q Consensus 75 ~~ipii~-~t~~~~~~~~~~~~~~ 97 (123)
-+. ++. +.+.+-.+...+..+.
T Consensus 99 GHl-V~sTlHa~sa~~ai~Rl~~~ 121 (198)
T cd01131 99 GHL-VMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred CCE-EEEEECCCCHHHHHHHHHHH
T ss_conf 993-99976759899999999996
No 390
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=33.05 E-value=43 Score=15.56 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=34.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC-----------CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 9999504129695999999982857689959999924-----------99899999997699889987989899999999
Q gi|254780476|r 49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF-----------AMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 49 lillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~-----------~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
+|+=|-.|-+-+-||.+..-- +.++.++-.|+=-.. .......+....|.+-.=.+--+.+++.+++.
T Consensus 146 vilGDGEl~EG~~WEAam~Aa-h~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~ 224 (243)
T COG3959 146 VILGDGELDEGQVWEAAMTAA-HYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALE 224 (243)
T ss_pred EEECCCCCCCCCHHHHHHHHH-HHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 995575436652799999998-7053767999945874247765432685200788884380689975847999999998
Q ss_pred HH
Q ss_conf 97
Q gi|254780476|r 118 KY 119 (123)
Q Consensus 118 ~~ 119 (123)
+.
T Consensus 225 ~~ 226 (243)
T COG3959 225 KA 226 (243)
T ss_pred HH
T ss_conf 41
No 391
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=32.94 E-value=43 Score=15.55 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=15.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 7789953998999999999997
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIET 24 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~ 24 (123)
+.|||||-+....+.....+..
T Consensus 1 ~~vlVVEK~avf~~L~~~~~~~ 22 (160)
T cd00223 1 DFVLVVEKEAVFQRLIEEGFHE 22 (160)
T ss_pred CEEEEEECHHHHHHHHHCCCCC
T ss_conf 9799996499999999748564
No 392
>PRK13129 consensus
Probab=32.79 E-value=43 Score=15.54 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 999999828576899599999249------9899999997699889987989899
Q gi|254780476|r 63 EITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI 111 (123)
Q Consensus 63 el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~ 111 (123)
++++++|+. .++|++++|.++ .+....++.++|+++.+.--+.+++
T Consensus 85 ~~~~~~r~~---~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE 136 (267)
T PRK13129 85 EMLESLKGK---LTIPIILFTYYNPLLNRGMERFCEQAAAAGVAGLVVPDLPLEE 136 (267)
T ss_pred HHHHHHHCC---CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999985434---7888899861078988559999999986698757678999899
No 393
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=32.68 E-value=43 Score=15.52 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHCCC-EEEE--------ECCHHHHHHHHHH---CCCCEEEEEEECCCCCH-------HHHHHHHHHC
Q ss_conf 98999999999997898-9999--------8897999999982---79989999504129695-------9999999828
Q gi|254780476|r 11 NELNMKLFRDLIETSGY-IALQ--------TRNGMEALELARQ---HKPDVIIMDIQLQEISG-------LEITKQIKED 71 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~-~v~~--------a~~g~eal~~l~~---~~~dlillD~~mp~~dG-------~el~~~ir~~ 71 (123)
|+-|.+.--+-.++.|- .+.. +.+-+.-+++.++ --.|-|.+ -+|.| |||.+.||+.
T Consensus 116 D~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~I----KDMaGlLTP~~AYELV~alK~~ 191 (616)
T TIGR01108 116 DPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELAKELLEMGVDSICI----KDMAGLLTPKVAYELVSALKKE 191 (616)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE----ECCCCCCCHHHHHHHHHHHHHH
T ss_conf 877899999999973897899997124684367888999999999818860552----0200464415899999999742
Q ss_pred CCCCCCCEEEEEEC--CC-HHHHHHHHHCCCCEE
Q ss_conf 57689959999924--99-899999997699889
Q gi|254780476|r 72 SELQEIPVIAVTAF--AM-KGDEERIRKGGCEAY 102 (123)
Q Consensus 72 ~~~~~ipii~~t~~--~~-~~~~~~~~~~g~~~~ 102 (123)
. .++||=+.|-. +. +-...++.++|++.+
T Consensus 192 ~--~n~pvhLH~H~TtGmA~~AllkA~EAG~d~i 223 (616)
T TIGR01108 192 F--GNLPVHLHSHATTGMAEMALLKAIEAGADMI 223 (616)
T ss_pred C--CCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 3--9746886324723379999998887078800
No 394
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=32.60 E-value=43 Score=15.52 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=48.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHH----HHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCCC
Q ss_conf 899539989999999999978989----999889799999----99827998999950412969--59999999828576
Q gi|254780476|r 5 VMIVEDNELNMKLFRDLIETSGYI----ALQTRNGMEALE----LARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSEL 74 (123)
Q Consensus 5 iLiVDD~~~~~~~l~~~l~~~g~~----v~~a~~g~eal~----~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~~ 74 (123)
++.+||.-..+.. |+.+|.. .....|.++... .++...-=.++.|-.||.++ |+++.+..++..
T Consensus 33 ~iaaEDTR~t~~L----L~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~g-- 106 (275)
T COG0313 33 VIAAEDTRVTRKL----LSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAG-- 106 (275)
T ss_pred EEEEECCHHHHHH----HHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCC--
T ss_conf 9999514779999----9973999834503478677879999999866984899805899766685099999999869--
Q ss_pred CCCCEEEEEECC
Q ss_conf 899599999249
Q gi|254780476|r 75 QEIPVIAVTAFA 86 (123)
Q Consensus 75 ~~ipii~~t~~~ 86 (123)
++|+.+.|-.
T Consensus 107 --i~V~~lPG~s 116 (275)
T COG0313 107 --IRVVPLPGPS 116 (275)
T ss_pred --CCEEECCCCC
T ss_conf --9189668834
No 395
>PRK13227 consensus
Probab=32.47 E-value=44 Score=15.50 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf 999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY 119 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~ 119 (123)
.++++.+|+. .+++-++|+.............|..+|+ .|| +|+.++..+++.
T Consensus 102 ~~~L~~Lk~~----g~~~~ivTn~~~~~~~~~l~~~gl~~~Fd~iv~~ddv~~~KP-~P~~~~~~~~~l 165 (228)
T PRK13227 102 KETLEALKAQ----GYPLALVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKP-HPAPLLLVCEKL 165 (228)
T ss_pred HHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 9999999987----996578845706766678886093554344300333577799-759999999981
No 396
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.36 E-value=44 Score=15.49 Aligned_cols=65 Identities=25% Similarity=0.391 Sum_probs=40.1
Q ss_pred HHHHHHHH---HCCCCEEEEE-------EECCCCCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 99999998---2799899995-------04129695--999999982857689959999924998999999976998899
Q gi|254780476|r 36 MEALELAR---QHKPDVIIMD-------IQLQEISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 36 ~eal~~l~---~~~~dlillD-------~~mp~~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
+|++++++ +.-.|.+=+. ..+|...| .++++.||+.. .+||+...+...++..+++++.|..|++
T Consensus 241 ~e~~~~a~~l~~~gvd~i~vs~G~~~~~~~~~~~~~~~~~~a~~ik~~~---~ipvi~~G~i~~p~~ae~~l~~G~~DlV 317 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 9999999999975997899558987766667778642679999999878---9839997998999999999987994006
No 397
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=32.02 E-value=44 Score=15.46 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCE
Q ss_conf 89999999999978989------999889799---999998279989999504129695---999999982857689959
Q gi|254780476|r 12 ELNMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPV 79 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipi 79 (123)
....+.+.++++..|.. ...-+.|+. |+..+-...|+++++|=-+...|- .++...+++......+++
T Consensus 105 ~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~ 184 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184 (213)
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99999999999875992465099556999999999999998759998998388764298999999999999999749989
Q ss_pred EEEEEC
Q ss_conf 999924
Q gi|254780476|r 80 IAVTAF 85 (123)
Q Consensus 80 i~~t~~ 85 (123)
|++|..
T Consensus 185 i~vTHd 190 (213)
T cd03301 185 IYVTHD 190 (213)
T ss_pred EEECCC
T ss_conf 999999
No 398
>PRK05899 transketolase; Reviewed
Probab=31.96 E-value=44 Score=15.45 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=33.6
Q ss_pred EEEEECCCHHHH---------HHHHHHHHHCCCEEEEECCHH------HHHHHHHH--CCCCEEEEEEE
Q ss_conf 789953998999---------999999997898999988979------99999982--79989999504
Q gi|254780476|r 4 KVMIVEDNELNM---------KLFRDLIETSGYIALQTRNGM------EALELARQ--HKPDVIIMDIQ 55 (123)
Q Consensus 4 kiLiVDD~~~~~---------~~l~~~l~~~g~~v~~a~~g~------eal~~l~~--~~~dlillD~~ 55 (123)
=|+|+|||.... +-+...++.+||.+....+|. .|++.++. .+|-+|+.-..
T Consensus 182 LIvI~ndN~~sIdg~v~~~~~~~l~~rf~a~Gw~vi~v~DGhD~~~I~~Ai~~Ak~~~~kPtvI~v~Ti 250 (661)
T PRK05899 182 LIVIYDDNRISIDGDTSGWFSEDTKKRFEAYGWHVIEVVDGHDVEAIDAAIEEAKAETDKPTLIIAKTI 250 (661)
T ss_pred EEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 899994797000664042105989999997698678437999999999999999864699868999823
No 399
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=31.92 E-value=44 Score=15.45 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=55.2
Q ss_pred CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 7789-953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVM-IVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiL-iVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
|||- +.+|++ ...+.+++.++..|.++... .+-...+..++...||.|++-... .++.-+.+++|+.
T Consensus 134 kkvail~~~~~yg~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~~pD~v~~~~~~--~~~~~~~~q~~~~ 211 (312)
T cd06333 134 KTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSG--TPAALPAKNLRER 211 (312)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHC
T ss_conf 88999961760559999999999997799399999727987677999999985698999994575--1699999999976
Q ss_pred CCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 57689959999924998999999
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
. -+.|++.-.+.........+
T Consensus 212 G--~~~~~~~~~~~~~~~~~~~~ 232 (312)
T cd06333 212 G--YKGPIYQTHGVASPDFLRLA 232 (312)
T ss_pred C--CCCCEEECCCCCCHHHHHHH
T ss_conf 9--98708812766787999987
No 400
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=31.81 E-value=45 Score=15.44 Aligned_cols=98 Identities=11% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-----------------------CCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 9999999997898999988979999999827-----------------------99899995041296959999999828
Q gi|254780476|r 15 MKLFRDLIETSGYIALQTRNGMEALELARQH-----------------------KPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-----------------------~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
.-.+...|+..|+++..++|. .|+++++-- .+|+++. -+.+-.|..-+-..+..
T Consensus 16 ~lYl~~~Lk~~G~~v~Va~np-AA~kLl~vaDpe~~Ylk~~~dld~~l~~i~e~~~d~~~~--FvHNDagvsYa~T~~~i 92 (138)
T pfam09001 16 ALYLSNKLKDKGFRVVVAANP-AALKLLEVADPEKYYLKEVVDLDKGIADIAEGDFDLIFG--FVHNDAGVSYAVTMKAV 92 (138)
T ss_pred HHHHHHHHHHCCCCEEEECCH-HHHHHHHHCCCCCCHHCCEEEHHHHHHHHHCCCCCEEEE--EEECCCHHHHHHHHHHH
T ss_conf 999999987669606996698-887361211876400104355999874552068887999--97356226678988875
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHH
Q ss_conf 576899599999249989999999769988998798-98999999999
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKK 118 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~~ 118 (123)
++.+...|| + +.. .+...+..+.++.-+..+-+ ++..|..++.+
T Consensus 93 ~~~~~~aiV-F-g~~-~e~la~~i~~~~e~i~~ra~HNP~pl~~kld~ 137 (138)
T pfam09001 93 SNAKTYAIV-F-GEH-AEELAETIEFDAEVIAARAFHNPMPLKVKLDE 137 (138)
T ss_pred CCCCEEEEE-E-CCC-HHHHHHHHCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 478658999-3-588-79999986489817984312486666555214
No 401
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=31.63 E-value=45 Score=15.42 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=23.6
Q ss_pred HCCCEEEEECCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 7898999988979999999827998999950
Q gi|254780476|r 24 TSGYIALQTRNGMEALELARQHKPDVIIMDI 54 (123)
Q Consensus 24 ~~g~~v~~a~~g~eal~~l~~~~~dlillD~ 54 (123)
..+..|..+.+-.+|.+.+.++.+|+|++|=
T Consensus 119 ~~~~~v~V~~~R~~~~~~l~~~~~dviIlDD 149 (334)
T PRK00652 119 RTGAPVAVSPDRVKAIKALLALGADIIILDD 149 (334)
T ss_pred CCCCCEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf 7898399956689999999965999999747
No 402
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.53 E-value=45 Score=15.41 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=54.1
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCC--HHHHHHHHHHCCCCCCC
Q ss_conf 778995--399899999999999789899998897999999982-7998999950412969--59999999828576899
Q gi|254780476|r 3 KKVMIV--EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS--GLEITKQIKEDSELQEI 77 (123)
Q Consensus 3 kkiLiV--DD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~d--G~el~~~ir~~~~~~~i 77 (123)
+||.+. -.+....+.++..|...|..+....+.......+.. .+-|+++. +..++.+ -.++++..|+ +.+
T Consensus 14 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~-iS~sg~~~~~~~~~~~ak~----~g~ 88 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA-ISFSGETKETVEAAEIAKE----RGA 88 (139)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHH----CCC
T ss_conf 92899980815999999999972589827987962778888745999999999-7686363789999999998----699
Q ss_pred CEEEEEECCCHHHHH
Q ss_conf 599999249989999
Q gi|254780476|r 78 PVIAVTAFAMKGDEE 92 (123)
Q Consensus 78 pii~~t~~~~~~~~~ 92 (123)
|+|.+|+........
T Consensus 89 ~ii~IT~~~~s~l~~ 103 (139)
T cd05013 89 KVIAITDSANSPLAK 103 (139)
T ss_pred EEEEEECCCCCHHHH
T ss_conf 799997999997799
No 403
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.52 E-value=45 Score=15.41 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=58.0
Q ss_pred EEEECCCHH----HHHHHHHHHHHCCC--EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 899539989----99999999997898--99-998897999999982799899995041296959999999828576899
Q gi|254780476|r 5 VMIVEDNEL----NMKLFRDLIETSGY--IA-LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 5 iLiVDD~~~----~~~~l~~~l~~~g~--~v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
|||=|+.-. ..+.++..-+..++ .+ .++.+-+++.+.+.. .+|.|.+|=.-| .+=-+..+.+|+.. .+
T Consensus 166 iLIkdNHi~~~g~i~~ai~~~r~~~~~~~~IeVEv~~l~q~~~a~~~-g~DiI~LDnm~~-~~~~~~v~~l~~~~--~~- 240 (285)
T PRK07428 166 VMIKDNHIQAAGGIGEAITRIRQQIPYPLTIEVETETLEQVQEALEY-GADIIMLDNMPV-DQMQQAVQLIRQQN--PR- 240 (285)
T ss_pred EEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC-CCCEEEECCCCH-HHHHHHHHHHHHHC--CC-
T ss_conf 56777475202899999999997489982699996989999999966-999999879999-99999999987308--98-
Q ss_pred CEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 59999924998999999976998899
Q gi|254780476|r 78 PVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 78 pii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
.++-.||.-..+...+..+.|++.+.
T Consensus 241 v~iEaSGgIn~~ni~~yA~tGVD~Is 266 (285)
T PRK07428 241 VKIEASGNITLETIRAVAETGVDYIS 266 (285)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 89999899999999999974999998
No 404
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=31.32 E-value=46 Score=15.39 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCHHH-HHHHHHHCCCCEEEEEEE---CCCCCH----HHHHHHHHHCCCCCCCCEEE
Q ss_conf 9989999999999978989999889799-999998279989999504---129695----99999998285768995999
Q gi|254780476|r 10 DNELNMKLFRDLIETSGYIALQTRNGME-ALELARQHKPDVIIMDIQ---LQEISG----LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 10 D~~~~~~~l~~~l~~~g~~v~~a~~g~e-al~~l~~~~~dlillD~~---mp~~dG----~el~~~ir~~~~~~~ipii~ 81 (123)
.++...+.++..+.-.=+.+..+..+.+ ..........|.+++|.. .++.+| |+++...+ ...| ++
T Consensus 85 e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~~-----~~~~-~~ 158 (208)
T COG0135 85 EDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKLR-----LSKP-VM 158 (208)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCEECHHHCCCCC-----CCCC-EE
T ss_conf 99999999985348756999986776224455441487748998188877789788677977705424-----5698-79
Q ss_pred EEECCCHHHHHHHHHCCC
Q ss_conf 992499899999997699
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGC 99 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~ 99 (123)
+.|.-.++...++++.+.
T Consensus 159 LAGGL~p~NV~~ai~~~~ 176 (208)
T COG0135 159 LAGGLNPDNVAEAIALGP 176 (208)
T ss_pred EECCCCHHHHHHHHHHCC
T ss_conf 977889899999998359
No 405
>PRK03094 hypothetical protein; Provisional
Probab=31.01 E-value=46 Score=15.36 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 999999999789899998897999999982799899995041296959999999828576899599999249
Q gi|254780476|r 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA 86 (123)
Q Consensus 15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~ 86 (123)
..-++++|+..||+|..-.+..+| +..|++++--.=.++=|++ +. ....|||=-+|..
T Consensus 10 Ls~v~~~L~~~GY~Vv~l~~~~~a------~~~Da~ViTG~d~N~mGiq-------d~-~t~~pVI~A~GlT 67 (80)
T PRK03094 10 LTDVQQALKQKGYEVVTLNSEQDA------QGCDCCVVTGQDSNVMGIA-------DT-STKGSVITASGLT 67 (80)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCCCC-------CC-CCCCCEEECCCCC
T ss_conf 259999999779878966871433------5678899958976522644-------13-4568748678999
No 406
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.00 E-value=46 Score=15.36 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCCCEEEEEEECC---------------CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH----H-HHHCCCCEEEE
Q ss_conf 7998999950412---------------96959999999828576899599999249989999----9-99769988998
Q gi|254780476|r 45 HKPDVIIMDIQLQ---------------EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE----R-IRKGGCEAYIS 104 (123)
Q Consensus 45 ~~~dlillD~~mp---------------~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~-~~~~g~~~~l~ 104 (123)
+.+|+|+..=..| -++..|++.++ .+.|+|.+||........ . ....|.+.++.
T Consensus 71 ~~~d~vV~SPgI~~~~p~~~~a~~~~i~v~~~~el~~~~------~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~ 144 (450)
T PRK02472 71 ENFDLMVKNPGIPYDNPMVEEALEKGIPIITEVELAYLI------SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLA 144 (450)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHHHHHHHH------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 788799989987999999999998699674387888875------15978998279997319999999999749973999
No 407
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=30.96 E-value=46 Score=15.36 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEE
Q ss_conf 999999999978989------999889799---999998279989999504129695---99999998285768995999
Q gi|254780476|r 14 NMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~ 81 (123)
.++...+.|...|.. +.+-+-|+. ++..+-.+.|+++++|=-..+.|- .++.+.+|+..+...+.||+
T Consensus 129 ~~~~~~~~L~~vgl~~~~~~~~~~LSGGqkQRv~IArAL~~~P~iLllDEPta~LDp~~~~~i~~~l~~l~~~~g~Til~ 208 (262)
T PRK09984 129 QKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208 (262)
T ss_pred HHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999987799656509853489999999999999971999999838867799999999999999999854979999
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 82 VT 83 (123)
Q Consensus 82 ~t 83 (123)
+|
T Consensus 209 vt 210 (262)
T PRK09984 209 TL 210 (262)
T ss_pred EC
T ss_conf 88
No 408
>PRK06823 ornithine cyclodeaminase; Validated
Probab=30.65 E-value=47 Score=15.32 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=35.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf 77899539989999999999978989999889799999
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE 40 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~ 40 (123)
++|.+.+-++..++.+.+.++..|+.+..+.+.+++..
T Consensus 154 ~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~eav~ 191 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAH 191 (315)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 09999469979999999999861990799489999974
No 409
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.55 E-value=47 Score=15.31 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCC-CEEEEEEECCCC-CHH--HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH-HCCCCEE
Q ss_conf 999999982799-899995041296-959--999999828576899599999249989999999-7699889
Q gi|254780476|r 36 MEALELARQHKP-DVIIMDIQLQEI-SGL--EITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAY 102 (123)
Q Consensus 36 ~eal~~l~~~~~-dlillD~~mp~~-dG~--el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~-~~g~~~~ 102 (123)
.+.++.+.+... .+++.|+.-.++ .|+ ++++.+++. .++|+|+--|-...++..+++ +.|+++.
T Consensus 155 ~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~---~~ipiIasGGi~s~~di~~l~~~~~v~gv 223 (253)
T PRK01033 155 VEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELIKKISSA---VKIPVTALGGAGSLDDIADLIQEAGASAA 223 (253)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 9999998746977999987848897668799999999987---89999997898999999999986797399
No 410
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=30.46 E-value=47 Score=15.31 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=36.6
Q ss_pred ECCHHHHHHHHHH---C-CCCEEEEEEECCCCCH--H----------HHHHHHHHCCCCCCCCEEE-EEECC--CHHHHH
Q ss_conf 8897999999982---7-9989999504129695--9----------9999998285768995999-99249--989999
Q gi|254780476|r 32 TRNGMEALELARQ---H-KPDVIIMDIQLQEISG--L----------EITKQIKEDSELQEIPVIA-VTAFA--MKGDEE 92 (123)
Q Consensus 32 a~~g~eal~~l~~---~-~~dlillD~~mp~~dG--~----------el~~~ir~~~~~~~ipii~-~t~~~--~~~~~~ 92 (123)
+.+.+|-.+.++. . ..|.+-+.+.-|...+ . ++++.+|+ ..++||++ +|... ..+...
T Consensus 100 ~~~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~~---~~~~Pv~vKlsP~~~~i~~ia~ 176 (301)
T PRK07259 100 GSTPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKS---VSKVPVIVKLTPNVTDIVEIAK 176 (301)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCHHHHHHHHH
T ss_conf 6776899999998645568888999654788885266608799999999999987---3489779980787121999999
Q ss_pred HHHHCCCCEEEE
Q ss_conf 999769988998
Q gi|254780476|r 93 RIRKGGCEAYIS 104 (123)
Q Consensus 93 ~~~~~g~~~~l~ 104 (123)
.+.+.|+++++.
T Consensus 177 ~~~~~gadgvv~ 188 (301)
T PRK07259 177 AAEEAGADGLSL 188 (301)
T ss_pred HHHHCCCCEEEE
T ss_conf 999759988999
No 411
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=30.42 E-value=47 Score=15.30 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE--------------------ECCHHHHHHHHHHCCCCEEEEEEE---------CCCC
Q ss_conf 39989999999999978989999--------------------889799999998279989999504---------1296
Q gi|254780476|r 9 EDNELNMKLFRDLIETSGYIALQ--------------------TRNGMEALELARQHKPDVIIMDIQ---------LQEI 59 (123)
Q Consensus 9 DD~~~~~~~l~~~l~~~g~~v~~--------------------a~~g~eal~~l~~~~~dlillD~~---------mp~~ 59 (123)
|+|-...+-+.++....|..|+. ..+.++|.+.+++...|.+-..+. -|..
T Consensus 109 eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG~~HG~yk~~~p~L 188 (283)
T pfam01116 109 EENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSEDEALYTDPEEAKEFVERTGVDSLAVAIGNVHGVYKPLEPKL 188 (283)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 99999999999999873984899750036756676777632225899999999998698878764365344468999866
Q ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHCCCCEE
Q ss_conf 95999999982857689959999924998-99999997699889
Q gi|254780476|r 60 SGLEITKQIKEDSELQEIPVIAVTAFAMK-GDEERIRKGGCEAY 102 (123)
Q Consensus 60 dG~el~~~ir~~~~~~~ipii~~t~~~~~-~~~~~~~~~g~~~~ 102 (123)
| |+++++|++.- ++|+++.-++..+ ++..++.+.|+.-+
T Consensus 189 ~-~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 228 (283)
T pfam01116 189 D-FDRLKEIQAAV---DVPLVLHGGSGVPDEEIRKAIKLGVAKI 228 (283)
T ss_pred C-HHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf 9-99999999873---9987865899999999999998396699
No 412
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=30.36 E-value=47 Score=15.30 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=52.6
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHHCCCEEE-------EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 778995-3998999999999997898999-------98897999999982799899995041296959999999828576
Q gi|254780476|r 3 KKVMIV-EDNELNMKLFRDLIETSGYIAL-------QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 (123)
Q Consensus 3 kkiLiV-DD~~~~~~~l~~~l~~~g~~v~-------~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~ 74 (123)
||+-++ +|+..-+.....+-+.++-++. ...+-...+..++...||+|++ .++..++..++++.|+..-.
T Consensus 135 kkvail~~d~~~g~~~~~~~~~~~~~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~v~~--~~~~~~~~~~~~q~~~~g~~ 212 (333)
T cd06332 135 KKVVIIAPDYAAGKDAVAGFKRTFKGEVVEEVYTPLGQLDFSAELAQIRAAKPDAVFV--FLPGGMAVNFVKQYDQAGLK 212 (333)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHHCCCC
T ss_conf 7799995786476999999999727041346754788655899999998669799999--35753799999999974998
Q ss_pred CCCCEEEEEECCCHHHHHHH
Q ss_conf 89959999924998999999
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~ 94 (123)
.++|++.-.....+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (333)
T cd06332 213 KKIPLYGPGFLTDQDTLPAQ 232 (333)
T ss_pred CCCCEEEECCCCCHHHHHHH
T ss_conf 78618986054788899856
No 413
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=30.24 E-value=48 Score=15.28 Aligned_cols=72 Identities=10% Similarity=0.203 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 99999982799899995041296959999999828576899599999249989999999769988998798989999999
Q gi|254780476|r 37 EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 (123)
Q Consensus 37 eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i 116 (123)
+..+.+.+ ++|+--...-.-.|+.+++.+|.. .-|.+++-.-. .-.+.+-+-+.=|.++++|++.+
T Consensus 44 ~vv~~in~---n~v~Wggdv~~~Eg~~va~~l~~~----~fPfla~i~l~-------~~~m~vv~r~eG~~~p~el~~~L 109 (116)
T cd02991 44 EVIEYINT---RMLFWACSVAKPEGYRVSQALRER----TYPFLAMIMLK-------DNRMTIVGRLEGLIQPEDLINRL 109 (116)
T ss_pred HHHHHHHH---CEEEEEEECCCHHHHHHHHHCCCC----CCCEEEEEEEE-------CCCEEEEEEEECCCCHHHHHHHH
T ss_conf 99999750---869999755975899999976888----79958999970-------88348999952689989999999
Q ss_pred HHHHHC
Q ss_conf 997403
Q gi|254780476|r 117 KKYIGE 122 (123)
Q Consensus 117 ~~~l~~ 122 (123)
++++.+
T Consensus 110 ~~~i~~ 115 (116)
T cd02991 110 TFIMDA 115 (116)
T ss_pred HHHHHC
T ss_conf 999856
No 414
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=30.15 E-value=48 Score=15.27 Aligned_cols=52 Identities=17% Similarity=0.334 Sum_probs=31.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC--EEEEEEE---CCCCCHHHHH
Q ss_conf 87789953998999999999997898999988979999999827998--9999504---1296959999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQ---LQEISGLEIT 65 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~d--lillD~~---mp~~dG~el~ 65 (123)
|+|||+|+-++.--.-.+..| +.+.++.+++.+|+ ++..|+. +|..|+--+.
T Consensus 1 MskvL~I~as~~~~~S~S~~l------------~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~ 57 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKL------------ADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLA 57 (202)
T ss_pred CCEEEEEECCCCCCCCHHHHH------------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH
T ss_conf 963899954777652589999------------999999999749998189865113877656899983
No 415
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=30.10 E-value=28 Score=16.60 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 7899539989999999999978989-99-988979999999827998999950412969599999998285768995999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYI-AL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~-v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
+|.=||-++...+.-+..|...|+. |. ...+|..++. ..-|||.|++-..-|++- -.++.+++..... -+|+=+
T Consensus 102 ~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~p--e~APYD~IIVTAaa~~IP-~aLldQLk~GGRL-ViPvn~ 177 (317)
T PRK13943 102 LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--EFSPYDVIFVTVGVDEVP-ETWFTQLKEGGRV-IVPINL 177 (317)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCCCCC-HHHHHHCCCCCEE-EEEEEE
T ss_conf 599998679999999999997799864999799888886--679977899985276489-9999961859699-998410
Q ss_pred EEECCCHHHHHHHHHCCC
Q ss_conf 992499899999997699
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGC 99 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~ 99 (123)
.....++....+..+.++
T Consensus 178 ~~~~~q~~~~~~k~~~~~ 195 (317)
T PRK13943 178 KLSRRQPAFLFKKKDPYL 195 (317)
T ss_pred EEECCCCCEEEEECCCCC
T ss_conf 650568653577437764
No 416
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=30.06 E-value=48 Score=15.26 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC-CCHHHHHHHHHCCCCEEE
Q ss_conf 799999998279989999504129695999999982857689959999924-998999999976998899
Q gi|254780476|r 35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF-AMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~-~~~~~~~~~~~~g~~~~l 103 (123)
-+.+++.++...||+|=+ ||+. -.++.+++++.. .+|+|+ .|. ..+++..+++++|+.+.=
T Consensus 105 l~~~~~~i~~~~PD~IEi---lPG~-~p~~i~~i~~~~---~~PiIA-GGLI~~~edv~~aL~aGA~aVS 166 (174)
T pfam04309 105 LERSIEQIEKLEPDFIEV---LPGV-MPKVIQEITERT---NIPIIA-GGLIRTEEEVREALKAGAVAVS 166 (174)
T ss_pred HHHHHHHHHHCCCCEEEE---CCHH-HHHHHHHHHHHC---CCCEEE-ECCCCCHHHHHHHHHCCCEEEE
T ss_conf 999999986479899999---8666-999999999747---999997-6783889999999984996998
No 417
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=30.04 E-value=43 Score=15.52 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=19.7
Q ss_pred HHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 999827998999950412969599999998
Q gi|254780476|r 40 ELARQHKPDVIIMDIQLQEISGLEITKQIK 69 (123)
Q Consensus 40 ~~l~~~~~dlillD~~mp~~dG~el~~~ir 69 (123)
+.+....+|+|+.| ..|+.+|.....+.+
T Consensus 111 ~~~~~~~~DvVlSD-mAPn~tG~~~~D~~~ 139 (209)
T PRK11188 111 ERVGDSKVDVVMSD-MAPNMSGTPAVDIPR 139 (209)
T ss_pred HHHCCCCCCEEECC-CCCCCCCCHHHHHHH
T ss_conf 98589873089666-665667870335999
No 418
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=30.02 E-value=48 Score=15.26 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|+-+++.+. .-+|+|. |... ...+....|.++|+..|-+++.|.+.|.+++.+
T Consensus 316 gl~~lEAma-----~G~PvIa-s~~g---g~~e~v~~g~~G~l~~~~d~~~la~ai~~ll~d 368 (398)
T cd03800 316 GLTALEAMA-----CGLPVVA-TAVG---GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHH-----CCCCEEE-CCCC---CCHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 148999998-----2999999-3899---807774179718997899999999999999779
No 419
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=30.01 E-value=34 Score=16.14 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=31.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE----EECC-CHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHH
Q ss_conf 9999504129695999999982857689959999----9249-9899999997699889-98798989999999997
Q gi|254780476|r 49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV----TAFA-MKGDEERIRKGGCEAY-ISKPISLSIFMETIKKY 119 (123)
Q Consensus 49 lillD~~mp~~dG~el~~~ir~~~~~~~ipii~~----t~~~-~~~~~~~~~~~g~~~~-l~KPi~~~~L~~~i~~~ 119 (123)
+++=|-.+-+-.-||.+...... . .++-+|+- +... ...........|.+.+ ..---+.+++.++++++
T Consensus 102 ~l~GDGEl~EG~~wEA~~~A~~~-~-~nli~iid~N~~~i~~~~~~~~~~f~afGw~~v~~vDGhd~~~i~~al~~a 176 (195)
T cd02007 102 AVIGDGALTGGMAFEALNNAGYL-K-SNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKVLKEV 176 (195)
T ss_pred EEECCCHHHHHHHHHHHHHHHHC-C-CCEEEEEECCCEEECCCCCCCCCHHHHCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 99778114018999999997651-8-986999967987614886664236877488677860789999999999998
No 420
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=29.89 E-value=48 Score=15.25 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCHHHHHHH---HHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 998999999---99999789899998897------999999982799899995041296959999999828576899599
Q gi|254780476|r 10 DNELNMKLF---RDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 10 D~~~~~~~l---~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+|+...+++ .+.++..||.+..+.+. .+.++.+.++.+|-+++ ++...--+..+.+++ ..+|+|
T Consensus 10 ~npf~~~l~~gie~~~~~~gy~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~---~~~~~~~~~~~~l~~----~~~PvV 82 (268)
T cd06298 10 TNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIF---MGGKISEEHREEFKR----SPTPVV 82 (268)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHH----CCCCEE
T ss_conf 7989999999999999987998999989999899999999999669999998---267799999999996----699899
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 81 AV 82 (123)
Q Consensus 81 ~~ 82 (123)
.+
T Consensus 83 ~i 84 (268)
T cd06298 83 LA 84 (268)
T ss_pred EE
T ss_conf 95
No 421
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.55 E-value=49 Score=15.21 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEE
Q ss_conf 999999999978989------999889799---999998279989999504129695---99999998285768995999
Q gi|254780476|r 14 NMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~ 81 (123)
.++.+.+.|+..|.. ...-+.|+. |+..+-...|+++++|=-+...|- .++.+.|++......+.+|+
T Consensus 107 ~~~rv~e~l~~v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~~~~i~~~l~~l~~~~~~T~i~ 186 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred HHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 99999999875897787619966699899999999999865999999808876469999999999999999985999999
Q ss_pred EEEC
Q ss_conf 9924
Q gi|254780476|r 82 VTAF 85 (123)
Q Consensus 82 ~t~~ 85 (123)
+|-.
T Consensus 187 VTHd 190 (232)
T cd03300 187 VTHD 190 (232)
T ss_pred ECCC
T ss_conf 9999
No 422
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.39 E-value=49 Score=15.20 Aligned_cols=99 Identities=21% Similarity=0.194 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC-CCEEEEEECCCH
Q ss_conf 98999999999997-8989999889799999998279989999504129695999999982857689-959999924998
Q gi|254780476|r 11 NELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE-IPVIAVTAFAMK 88 (123)
Q Consensus 11 ~~~~~~~l~~~l~~-~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~-ipii~~t~~~~~ 88 (123)
|...|++++++..+ ..+.+.-..-|-|-+-.=..+..|++++ +.=|...++.++++|++..+--. -+|-++-+...+
T Consensus 119 ~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~viv-VvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 119 NALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDLVIV-VVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCEEEE-EECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 8999999999751667489996334566656563257877999-957877888889999999987187549999950341
Q ss_pred H---HHHHHHHCCCCEEEECCCCHH
Q ss_conf 9---999999769988998798989
Q gi|254780476|r 89 G---DEERIRKGGCEAYISKPISLS 110 (123)
Q Consensus 89 ~---~~~~~~~~g~~~~l~KPi~~~ 110 (123)
. ....+.+.|-.-.-.=|.+++
T Consensus 198 ~e~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 198 EEELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 1577776532279748997169878
No 423
>PRK05748 replicative DNA helicase; Provisional
Probab=29.36 E-value=49 Score=15.19 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHHHHHHCCCEEEEEC--CHHHH---H-HHHHHC-CCCEEEEEEE--C--CCCCH----H---HHHHHHHHCCCCCCCCE
Q ss_conf 9999997898999988--97999---9-999827-9989999504--1--29695----9---99999982857689959
Q gi|254780476|r 18 FRDLIETSGYIALQTR--NGMEA---L-ELARQH-KPDVIIMDIQ--L--QEISG----L---EITKQIKEDSELQEIPV 79 (123)
Q Consensus 18 l~~~l~~~g~~v~~a~--~g~ea---l-~~l~~~-~~dlillD~~--m--p~~dG----~---el~~~ir~~~~~~~ipi 79 (123)
....+..+++.+.... +-.+- . ++.+++ ..++|++|+- | |+.++ . ++.+.+|....--++||
T Consensus 279 a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vviDYlqli~~~~~~~~~r~~ev~~isr~lK~lAkel~ipv 358 (448)
T PRK05748 279 AVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIVIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPV 358 (448)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 99998659837855898868999999999999759988999716864477787764399999999999999999969988
Q ss_pred EEEEECC
Q ss_conf 9999249
Q gi|254780476|r 80 IAVTAFA 86 (123)
Q Consensus 80 i~~t~~~ 86 (123)
|+++=-+
T Consensus 359 i~lsQLn 365 (448)
T PRK05748 359 IALSQLS 365 (448)
T ss_pred EEECCCC
T ss_conf 9970268
No 424
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=29.27 E-value=49 Score=15.18 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 998279989999504129-----695999999982857689959999924998999999
Q gi|254780476|r 41 LARQHKPDVIIMDIQLQE-----ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 41 ~l~~~~~dlillD~~mp~-----~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~ 94 (123)
.+.+..+|++++|=-+.- ++=-++..-|++.|...+ +++|+..-+......
T Consensus 91 ~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~e---vVlTGr~~p~~L~e~ 146 (172)
T pfam02572 91 ALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQH---VVLTGRGAPPELIEL 146 (172)
T ss_pred HHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf 97588989997355799975599689999999982899877---999899999999997
No 425
>PRK06483 short chain dehydrogenase; Provisional
Probab=29.13 E-value=50 Score=15.17 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=54.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCH-HHHHHHHHHCCCCCCCC
Q ss_conf 9877899539989999999999978989999-889799999998279989999504129695-99999998285768995
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISG-LEITKQIKEDSELQEIP 78 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG-~el~~~ir~~~~~~~ip 78 (123)
|.|+|||.=-..-.=..+...|...|+.|.. ..+..++.+.+++.....+-.|+. +.+. -++.+++.+. +..+-
T Consensus 1 M~ktVlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~l~~~~~~~~~~Dv~--~~~~v~~~~~~~~~~--~g~id 76 (236)
T PRK06483 1 MSAPILITGAGQRIGLALAKHLLAQGQPVIVSYRSHYPAIDELRQAGATCIQADFS--TNAGIMAFIDELKQH--TDGLR 76 (236)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHHH--HCCCC
T ss_conf 99879997899889999999999889989999598479999998569989992279--999999999999998--39975
Q ss_pred EEEEEE
Q ss_conf 999992
Q gi|254780476|r 79 VIAVTA 84 (123)
Q Consensus 79 ii~~t~ 84 (123)
+++..+
T Consensus 77 ~lVnNA 82 (236)
T PRK06483 77 AIIHNA 82 (236)
T ss_pred EEEECC
T ss_conf 999777
No 426
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=29.12 E-value=50 Score=15.17 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf 877899539989999999999978989999889799999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE 40 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~ 40 (123)
.++|.+.+=++..++.+.+.++..|+.+..+.+.++|++
T Consensus 154 i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~~av~ 192 (312)
T pfam02423 154 IEEIRIYDRDPEAAEKFARNLQGKGFEIVACTSAEEAVE 192 (312)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 768999968989999999999834996599489999971
No 427
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=29.02 E-value=50 Score=15.16 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=56.6
Q ss_pred EECCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCC--CCEEEEEEECCCCCHHHHHHH-HHHCCCCCCCCEEE
Q ss_conf 9539989999999999978--989999889799999998279--989999504129695999999-98285768995999
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGLEITKQ-IKEDSELQEIPVIA 81 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~--g~~v~~a~~g~eal~~l~~~~--~dlillD~~mp~~dG~el~~~-ir~~~~~~~ipii~ 81 (123)
.|=..|.....-+++|+.. +++...++|-.+|.+++.+.+ ....+..-.-...-|++++.. |. +.....+..++
T Consensus 101 ~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~-D~~~N~TRF~v 179 (279)
T COG0077 101 TVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELYGLDILAENIE-DEPNNRTRFLV 179 (279)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHCCCHHHHHCCC-CCCCCEEEEEE
T ss_conf 88747289999999999728883699817889999999728986736876987897739576761355-78888578999
Q ss_pred EEE
Q ss_conf 992
Q gi|254780476|r 82 VTA 84 (123)
Q Consensus 82 ~t~ 84 (123)
++-
T Consensus 180 l~r 182 (279)
T COG0077 180 LSR 182 (279)
T ss_pred EEC
T ss_conf 965
No 428
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.97 E-value=50 Score=15.15 Aligned_cols=100 Identities=10% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCEEEEEC--CCHH---HHHHHHHHHHHCCCEEEEECCHHHHHHH-----------H-----HHCCCCEEEEEEECCCCC
Q ss_conf 87789953--9989---9999999999789899998897999999-----------9-----827998999950412969
Q gi|254780476|r 2 LKKVMIVE--DNEL---NMKLFRDLIETSGYIALQTRNGMEALEL-----------A-----RQHKPDVIIMDIQLQEIS 60 (123)
Q Consensus 2 ~kkiLiVD--D~~~---~~~~l~~~l~~~g~~v~~a~~g~eal~~-----------l-----~~~~~dlillD~~mp~~d 60 (123)
.|+|+||- +++. ..+.+.+.|...|+.+....+....... + ..+..|+++.= +.|
T Consensus 4 ~R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l----GGD 79 (303)
T PRK03372 4 ERTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVL----GGD 79 (303)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE----CCC
T ss_conf 8889999708998999999999999997889899970401002444555565422345322335785589997----787
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 5999999982857689959999924998999999976998899879898999999999740
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
|- +++..|.. ....+||+-+. .|--+||+. +.++++.+.+.+++.
T Consensus 80 GT-~L~aar~~-~~~~iPilGiN-------------~G~lGFLt~-~~~~~~~~~l~~i~~ 124 (303)
T PRK03372 80 GT-FLRAAELA-RNADVPVLGVN-------------LGHVGFLAE-AEREDLDEAVERVVD 124 (303)
T ss_pred HH-HHHHHHHH-CCCCCCEEEEE-------------CCCCEEECC-CCHHHHHHHHHHHHC
T ss_conf 89-99999984-44799889872-------------598213124-698899999999980
No 429
>KOG2335 consensus
Probab=28.92 E-value=50 Score=15.15 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=57.9
Q ss_pred EECCCHHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHH---HCCCCEEEEEEECCCCCH-------HHHHHHHHHCC
Q ss_conf 953998999999999997898----9999889799999998---279989999504129695-------99999998285
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGY----IALQTRNGMEALELAR---QHKPDVIIMDIQLQEISG-------LEITKQIKEDS 72 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~----~v~~a~~g~eal~~l~---~~~~dlillD~~mp~~dG-------~el~~~ir~~~ 72 (123)
+.|+-+...++++.+-...+. .+....+-++.++.++ .-.-+.+.+--.-+...| |+..+.||++-
T Consensus 122 L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~ 201 (358)
T KOG2335 122 LMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV 201 (358)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 02388999999999985259986999985576787899999998679868999365577628888876779999999747
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHH-CCCCEEEE
Q ss_conf 768995999992499899999997-69988998
Q gi|254780476|r 73 ELQEIPVIAVTAFAMKGDEERIRK-GGCEAYIS 104 (123)
Q Consensus 73 ~~~~ipii~~t~~~~~~~~~~~~~-~g~~~~l~ 104 (123)
+++|+++--+-....+...+.+ .|+++.+.
T Consensus 202 --~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335 202 --PDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred --CCCCEEEECCCCCHHHHHHHHHHHCCCEEEE
T ss_conf --6770895088576899999999758746886
No 430
>KOG0780 consensus
Probab=28.91 E-value=50 Score=15.15 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC-C-CCCEEEEEECCCHHHHHHH
Q ss_conf 7999999982799899995041296959999999828576-8-9959999924998999999
Q gi|254780476|r 35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL-Q-EIPVIAVTAFAMKGDEERI 94 (123)
Q Consensus 35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~-~-~ipii~~t~~~~~~~~~~~ 94 (123)
..++++..+.+.+|+|++|..=-...-.++..++++.... + +.-|.++-++.....+.++
T Consensus 172 a~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780 172 ASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
T ss_conf 99999988863972899827873012489999999998515987389998562007679999
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=28.90 E-value=50 Score=15.15 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEE-EEECCCHHHHHHHH
Q ss_conf 7999999982799899995041296959999999828-5768995999-99249989999999
Q gi|254780476|r 35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED-SELQEIPVIA-VTAFAMKGDEERIR 95 (123)
Q Consensus 35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~-~~~~~ipii~-~t~~~~~~~~~~~~ 95 (123)
+.|+++..+.+.+|+||+|..=-+.---+|.++.++- ...+.--||+ +-|+-..+...+|.
T Consensus 192 A~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIGQAA~~QAk 254 (453)
T TIGR01425 192 ASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIGQAAFSQAK 254 (453)
T ss_pred ECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 002011322127847998379873225888899876863349983699806616678899999
No 432
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.60 E-value=51 Score=15.12 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCE------EEEECCHHHH---HHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEE
Q ss_conf 999999999978989------9998897999---99998279989999504129695---99999998285768995999
Q gi|254780476|r 14 NMKLFRDLIETSGYI------ALQTRNGMEA---LELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~------v~~a~~g~ea---l~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~ 81 (123)
..+...++++..|.. +..-+.|+.- +..+-...|+++++|=-....|- .++.+.+++......+++|+
T Consensus 108 ~~~~v~e~l~~~gl~~~~~~~P~~LSGGq~QRVaiARAL~~~P~llLlDEP~saLD~~~~~~i~~~l~~l~~~~~~t~i~ 187 (214)
T cd03297 108 DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF 187 (214)
T ss_pred HHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 99999999987799778608977799299999999999871999999808876669999999999999999985998999
Q ss_pred EEEC
Q ss_conf 9924
Q gi|254780476|r 82 VTAF 85 (123)
Q Consensus 82 ~t~~ 85 (123)
+|..
T Consensus 188 VTHd 191 (214)
T cd03297 188 VTHD 191 (214)
T ss_pred ECCC
T ss_conf 9899
No 433
>PRK07773 replicative DNA helicase; Validated
Probab=28.58 E-value=51 Score=15.11 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHCCCCEEEEEEE--CCCCCH--------HHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 8279989999504--129695--------999999982857689959999924
Q gi|254780476|r 43 RQHKPDVIIMDIQ--LQEISG--------LEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 43 ~~~~~dlillD~~--mp~~dG--------~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
+.+..++|++||- |..-+. -++.+.+|....--++|||++|--
T Consensus 310 ~~~~l~lIvvDYLQLm~~~~~~~~R~qevs~isr~LK~lAkeL~vPVialsQl 362 (868)
T PRK07773 310 QKANLKLIVVDYLQLMTSGKKYESRQQEVSEFSRHLKLLAKELEVPVIALSQL 362 (868)
T ss_pred HCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 52699889996155247898876298999999899999998758978987103
No 434
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=28.52 E-value=51 Score=15.11 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHH----HHC---CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9989999999999978989999-88979999999----827---998999950412969599999998285768995999
Q gi|254780476|r 10 DNELNMKLFRDLIETSGYIALQ-TRNGMEALELA----RQH---KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 10 D~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l----~~~---~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
++......+.+++..+||.-.+ .....+++-.+ +.. .+.+-+- .--+..|+-.++++||..... -||+
T Consensus 117 ~~~~ls~A~~dlv~~~~W~~ftiiYe~~~~L~rLq~ll~~~~~~~~~i~vr-~l~~~~d~r~vLkeIk~~~~~---~iIi 192 (333)
T cd06394 117 SNEDISVAVAGILNSFNYPTASLICAKAECLLRLEELLRQFLISKETLSVR-MLDDSRDPTPLLKEIRDDKTA---TIII 192 (333)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCCHHHHHHHHHHCCCC---EEEE
T ss_conf 989999999999997699669999707356899999987216789807999-878899867999999857774---7999
Q ss_pred -EEECCCHHHHHHHHHCCCCE----EEECCCC
Q ss_conf -99249989999999769988----9987989
Q gi|254780476|r 82 -VTAFAMKGDEERIRKGGCEA----YISKPIS 108 (123)
Q Consensus 82 -~t~~~~~~~~~~~~~~g~~~----~l~KPi~ 108 (123)
.+.........++.+.|..+ |+.-.++
T Consensus 193 Dc~~e~~~~iLkqa~qlgM~~~~y~YiiT~LD 224 (333)
T cd06394 193 DANASMSHTILLKASELGMTSAFYKYILTTMD 224 (333)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 88788899999999973004677089996353
No 435
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=28.50 E-value=51 Score=15.11 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=5.1
Q ss_pred HHHHCCCCEEEE
Q ss_conf 998279989999
Q gi|254780476|r 41 LARQHKPDVIIM 52 (123)
Q Consensus 41 ~l~~~~~dlill 52 (123)
.+..-+||+|+.
T Consensus 86 ~I~aLkPDLIi~ 97 (289)
T TIGR03659 86 KIKSLKPTVVLS 97 (289)
T ss_pred HHHHCCCCEEEE
T ss_conf 997369978995
No 436
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=28.36 E-value=51 Score=15.09 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=47.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEEE-ECCC-CCHH----------HHHHHHH
Q ss_conf 77899539989999999999978-98999988979999999827998999950-4129-6959----------9999998
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETS-GYIALQTRNGMEALELARQHKPDVIIMDI-QLQE-ISGL----------EITKQIK 69 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~~a~~g~eal~~l~~~~~dlillD~-~mp~-~dG~----------el~~~ir 69 (123)
+||+++|-|...-++++..+..- .|+-.+ --....+.+.++||+||=- +-|- -||+ ++-+.+.
T Consensus 249 q~v~f~DTD~i~T~vfa~~y~G~eDfeql~----P~~~~~i~~~r~DL~ll~~p~tew~~Dg~R~l~~~~~R~~F~~~l~ 324 (346)
T TIGR01526 249 QKVAFIDTDFITTQVFAKLYEGREDFEQLH----PFLKKTIAEYRFDLTLLLKPNTEWVDDGLRSLGSEESRKEFQELLE 324 (346)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCCHHHCC----HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 747898477678999998707865544506----2788776327884799727998734288520774322789999999
Q ss_pred HCCCCCCCCEEEEEECC
Q ss_conf 28576899599999249
Q gi|254780476|r 70 EDSELQEIPVIAVTAFA 86 (123)
Q Consensus 70 ~~~~~~~ipii~~t~~~ 86 (123)
+.-.-..++.+.++..+
T Consensus 325 ~~L~~~~~~f~~v~~~~ 341 (346)
T TIGR01526 325 RALAEFGLSFVVVEEDD 341 (346)
T ss_pred HHHHHCCCCEEEEECCC
T ss_conf 99997099469983387
No 437
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.28 E-value=52 Score=15.08 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCCEEEEEEECCCCCH------------HHHHHHHHHCCCCCCCCEEE-EEECC--CHHHHHHHHHCCCCEEE
Q ss_conf 9989999504129695------------99999998285768995999-99249--98999999976998899
Q gi|254780476|r 46 KPDVIIMDIQLQEISG------------LEITKQIKEDSELQEIPVIA-VTAFA--MKGDEERIRKGGCEAYI 103 (123)
Q Consensus 46 ~~dlillD~~mp~~dG------------~el~~~ir~~~~~~~ipii~-~t~~~--~~~~~~~~~~~g~~~~l 103 (123)
..|.+-+.+.-|...+ .++++.+|+ ..++||++ +|... .......+.+.|+++++
T Consensus 115 gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~---~~~~Pi~vKlsP~~~~i~~ia~~~~~~g~dgiv 184 (296)
T cd04740 115 GADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK---ATDVPVIVKLTPNVTDIVEIARAAEEAGADGLT 184 (296)
T ss_pred CCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 8988999788998676367757499999999999986---048966997189800099999999976998899
No 438
>PRK13116 consensus
Probab=28.17 E-value=52 Score=15.07 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=15.1
Q ss_pred CCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 899599999249------989999999769988998798989
Q gi|254780476|r 75 QEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLS 110 (123)
Q Consensus 75 ~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~ 110 (123)
+++|++++|.++ .+....++.++|+++.+.--+.++
T Consensus 93 ~~~PivlM~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~e 134 (278)
T PRK13116 93 PEVPIGMLIYGNVPFTRGLDRFYQEFAEAGADSILLPDVPVR 134 (278)
T ss_pred CCCCEEEEECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 987689980572887727999999997769758994699978
No 439
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=27.89 E-value=52 Score=15.04 Aligned_cols=99 Identities=25% Similarity=0.321 Sum_probs=65.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-----------EEEECCHHHHHHHHHH----CCCC-EEEEEEECCC-CCH--HH
Q ss_conf 77899539989999999999978989-----------9998897999999982----7998-9999504129-695--99
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYI-----------ALQTRNGMEALELARQ----HKPD-VIIMDIQLQE-ISG--LE 63 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~-----------v~~a~~g~eal~~l~~----~~~d-lillD~~mp~-~dG--~e 63 (123)
.|+.|.-..-...+.+++...++.-+ -..+.+-.+.|+.++. +..+ +|+||+.-=+ +.| .+
T Consensus 104 ~R~vVaTETl~~~ell~e~~rnyPPer~VVSlDfK~~~L~~~~l~~~leevrd~l~~f~~~GlI~LdI~sVGt~~G~n~e 183 (230)
T TIGR00734 104 DRVVVATETLDSTELLKEILRNYPPERIVVSLDFKEKRLDASSLEESLEEVRDLLNSFDLDGLIVLDISSVGTSKGVNLE 183 (230)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHH
T ss_conf 63688624504678999986158986379998400552000130456888875306631013798336330567787888
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 99999828576899599999249989999999769988998
Q gi|254780476|r 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 64 l~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
+++..+... +-||+.=-|-....+.+.+.++|+++.|.
T Consensus 184 ll~~~l~l~---e~PV~~GGGi~g~EdlEl~~~mGv~avLv 221 (230)
T TIGR00734 184 LLKKVLELS---ERPVILGGGIKGVEDLELLKEMGVSAVLV 221 (230)
T ss_pred HHHHHHHHH---CCCEEECCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 999886442---48714068736751078888568765755
No 440
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=27.85 E-value=52 Score=15.04 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=43.9
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 999999827998999950412969-59999999828576899599999249989999999769988998
Q gi|254780476|r 37 EALELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 (123)
Q Consensus 37 eal~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~ 104 (123)
+-.+.+-+.-.|++++|.-=.+-. =+++.+.||+. +.++|||+ -+-...+-.....++|++....
T Consensus 241 eRa~~Lv~aGvDvlvIDtAhGhs~~v~~~ik~ik~~--~p~v~vIa-GNVaT~~~a~~Li~aGAD~vkV 306 (499)
T PTZ00314 241 ERAAALIDAGVDVLVLDSSQGNSIYQIDFIKWIKST--YPHLEVIA-GNVVTQDQAKNLIDAGADGIRI 306 (499)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH--CCCCCEEE-EEECHHHHHHHHHHCCCCEEEE
T ss_conf 999999986998999816887727899999998852--79884676-4331099999999749987997
No 441
>pfam03830 PTSIIB_sorb PTS system sorbose subfamily IIB component.
Probab=27.71 E-value=53 Score=15.02 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 87789953998999999999997---89899998897999999982799
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET---SGYIALQTRNGMEALELARQHKP 47 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~---~g~~v~~a~~g~eal~~l~~~~~ 47 (123)
.++|++|||....-.+.+..+.. .|..+.. .+-++|.+.+.+..+
T Consensus 26 ~~~IiVvdD~~A~d~~~k~~l~ma~P~gvk~~i-~sv~~a~~~l~~~~~ 73 (151)
T pfam03830 26 ANRIIVVNDEVANDELRKTLLKMAAPAGVKVSI-FSVEKAIEVIKKGKY 73 (151)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEE-EEHHHHHHHHHCCCC
T ss_conf 999999775224799999999963899987999-879999999857677
No 442
>PRK10867 signal recognition particle protein; Provisional
Probab=27.66 E-value=53 Score=15.02 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 8778995399---899999999999789899998897-------999999982799899995041296959999999828
Q gi|254780476|r 2 LKKVMIVEDN---ELNMKLFRDLIETSGYIALQTRNG-------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 2 ~kkiLiVDD~---~~~~~~l~~~l~~~g~~v~~a~~g-------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
.|+||+|--| +...+.++.+-+..|..+..-..+ .+|++.++.+.+|+|++|.-=-.-.--++..++++.
T Consensus 129 ~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i 208 (453)
T PRK10867 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV 208 (453)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHH
T ss_conf 98379855887705899999999985198043678899889999999999997799999997876012108889999999
Q ss_pred CCC--CCCCEEEEEECCCHHHHHHHH----HCCCCEEEE
Q ss_conf 576--899599999249989999999----769988998
Q gi|254780476|r 72 SEL--QEIPVIAVTAFAMKGDEERIR----KGGCEAYIS 104 (123)
Q Consensus 72 ~~~--~~ipii~~t~~~~~~~~~~~~----~~g~~~~l~ 104 (123)
... .+--++++-+....+...++. ..++++.+.
T Consensus 209 ~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~~~~gvIl 247 (453)
T PRK10867 209 HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVL 247 (453)
T ss_pred HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 876378713797432235668999999998559870787
No 443
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.54 E-value=53 Score=15.01 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=20.0
Q ss_pred CHHHHHHHH---HHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEE
Q ss_conf 989999999---99997898999988979------9999998279989999
Q gi|254780476|r 11 NELNMKLFR---DLIETSGYIALQTRNGM------EALELARQHKPDVIIM 52 (123)
Q Consensus 11 ~~~~~~~l~---~~l~~~g~~v~~a~~g~------eal~~l~~~~~dlill 52 (123)
|+...++++ +.+...||.+..+.+.. +.++.+.++.+|-+++
T Consensus 11 npff~~l~~~ie~~~~~~Gy~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi 61 (264)
T cd06274 11 NRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIV 61 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 879999999999999986998999938999899999999999669987997
No 444
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=27.40 E-value=53 Score=14.99 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=39.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 877899539989999999999978989----9998897999999982-7998999950
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYI----ALQTRNGMEALELARQ-HKPDVIIMDI 54 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~----v~~a~~g~eal~~l~~-~~~dlillD~ 54 (123)
.+.|.-||-+....+..++.+.-.|+. -..+.+.-+.++.++. .+||+|++|=
T Consensus 146 A~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~VilDP 203 (286)
T pfam10672 146 ASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVIIDP 203 (286)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECC
T ss_conf 8779999198899999999999769995436999830999999986179998799879
No 445
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=27.37 E-value=54 Score=14.99 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
|+-+++.+- ..+|||.--.... .......|.++++.+|-+++.|.++|.+++.+
T Consensus 266 gl~~lEAma-----~G~PvIas~~~gg---~~e~v~~~~~G~l~~~~d~~~la~~i~~ll~~ 319 (348)
T cd03820 266 PMVLLEAMA-----FGLPVISFDCPTG---PSEIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred CCHHHHHHH-----CCCCEEEECCCCC---HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 708999998-----6999999679988---49995389629998899999999999999779
No 446
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.36 E-value=54 Score=14.99 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHHCCCCEE
Q ss_conf 499899999997699889
Q gi|254780476|r 85 FAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 85 ~~~~~~~~~~~~~g~~~~ 102 (123)
.+..+...+..++|++.|
T Consensus 362 nda~~ai~RL~~mGv~~~ 379 (500)
T COG2804 362 NDAPGAITRLLEMGVEPY 379 (500)
T ss_pred CCHHHHHHHHHHCCCCHH
T ss_conf 765889999998499889
No 447
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.31 E-value=54 Score=14.98 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=54.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 77899539989999999999978989--99988979999999827-9989999504129695999999982857689959
Q gi|254780476|r 3 KKVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV 79 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi 79 (123)
.||--+|-|+...+.+++.+...|+. .....++.+++. .. .||.||+.-. -..+ ++++..-. .++.---
T Consensus 59 ~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~---~~~~~daiFIGGg-~~i~--~ile~~~~--~l~~ggr 130 (187)
T COG2242 59 GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP---DLPSPDAIFIGGG-GNIE--EILEAAWE--RLKPGGR 130 (187)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHC---CCCCCCEEEECCC-CCHH--HHHHHHHH--HCCCCCE
T ss_conf 5599992588899999999998499967999546457636---9999999998798-7778--99999999--7186876
Q ss_pred EEEEECCCHHH---HHHHHHCCCC
Q ss_conf 99992499899---9999976998
Q gi|254780476|r 80 IAVTAFAMKGD---EERIRKGGCE 100 (123)
Q Consensus 80 i~~t~~~~~~~---~~~~~~~g~~ 100 (123)
+++.+...+.. .+...+.|+.
T Consensus 131 lV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 131 LVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
T ss_conf 999860088899999999972985
No 448
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=27.30 E-value=54 Score=14.98 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999827998999950412969599999998285768995999992499899999997699889987
Q gi|254780476|r 36 MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 (123)
Q Consensus 36 ~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~K 105 (123)
+++++.+.+...|.|++.-..-..+-=++++.|++. .++|+|++-+.... ..-++|.|+.-
T Consensus 22 ~~~~~~~~~sgtDaI~VGGS~~~~~~d~~v~~ik~~---~~lPviLfPg~~~~------vs~~aDailf~ 82 (231)
T pfam01884 22 EEIIEIVAESGTDAIMIGGSTGGVTLDNVVRLIKKV---YGLPIILFPGNPSG------VSRYADAIFFM 82 (231)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH---CCCCEEEECCCHHH------CCCCCCEEEEE
T ss_conf 999999997499999988988885689999999985---39998995698676------58677846656
No 449
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=27.24 E-value=54 Score=14.97 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 599999998285768995999992499899999997699889987989899999999974
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l 120 (123)
|.-+++.+- ..+|||+ |.... ..+..+.|.++|+.+|-+++.|.+.+.+.+
T Consensus 277 g~~~lEAma-----~G~pvI~-s~~gg---~~e~i~~g~~G~l~~~~d~~~la~~i~~l~ 327 (353)
T cd03811 277 PNVLLEAMA-----LGTPVVA-TDCPG---PREILEDGENGLLVPVGDEAALAAAALALL 327 (353)
T ss_pred CHHHHHHHH-----CCCCEEE-CCCCC---HHHHHCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 538999998-----0998999-48998---489844898389978999999999999998
No 450
>KOG0189 consensus
Probab=27.16 E-value=54 Score=14.97 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----HCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 999999999978989999889799999998-----2799899995041296959999999828576899599999
Q gi|254780476|r 14 NMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 14 ~~~~l~~~l~~~g~~v~~a~~g~eal~~l~-----~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t 83 (123)
-++++..-+...|-.+.++.+|.+.+.++. ..+|-++++|..=-.-.-+.+...+... +.+++|-.+-
T Consensus 34 P~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~Vekk--Y~~i~I~~~~ 106 (261)
T KOG0189 34 PQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKK--YGNIRIHVYF 106 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCEEEEEEC
T ss_conf 899999999972148999864645037999998739996169953344485887899999875--4865789975
No 451
>KOG2292 consensus
Probab=26.97 E-value=54 Score=14.95 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=37.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 9877899539989999999999978989999889799999998279989999
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM 52 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlill 52 (123)
|..|.-+||+|.=|...+...=+.+ +++.+.|++.+++...|-|++
T Consensus 556 MAnRTtlVDNNTWNNtHIa~VGkAM------sS~EekayeImr~lDVdYVLV 601 (751)
T KOG2292 556 MANRTTLVDNNTWNNTHIATVGKAM------SSPEEKAYEIMRELDVDYVLV 601 (751)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC------CCCHHHHHHHHHHCCCCEEEE
T ss_conf 1452498516865405788877641------892777999999738878999
No 452
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.89 E-value=55 Score=14.94 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=32.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 98778995399899999999999789899998897999999
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL 41 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~ 41 (123)
|-|||||+.--+..+++++. +..+|++.....+..++...
T Consensus 1 M~~kvLIANRGEIA~Ri~rt-~~elgi~tvavys~~D~~a~ 40 (449)
T PRK06111 1 MFQKVLIANRGEIAVRIIRT-CQKLGIRTVAIYSEADEDAL 40 (449)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCCEEEECCHHHCCCH
T ss_conf 97618998787999999999-99849979999173645683
No 453
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=21 Score=17.32 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=40.6
Q ss_pred CCCEEEEEC------CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCH
Q ss_conf 987789953------9989999999999978989999889799999998279989999504129695
Q gi|254780476|r 1 MLKKVMIVE------DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 (123)
Q Consensus 1 m~kkiLiVD------D~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG 61 (123)
|+||+|||= .-+.-..+++..|+..||.|....+. +|+.--.-+..|+|+=-..|..+.-
T Consensus 2 m~~kalIvwgGW~gHeP~~~ahi~~~~l~ee~f~vev~~~t-~afad~s~~d~~lIvP~~tms~I~k 67 (239)
T COG3828 2 MEKKALIVWGGWRGHEPETRAHIIKGPLEEEGFLVEVGGTT-EAFADPSLQDLDLIVPEKTMSTIEK 67 (239)
T ss_pred CCCCEEEEECCCCCCCCHHCCHHCCCCCHHHCEEEEECCCC-CCCCCCCCCCHHHHCHHHHCCCCCH
T ss_conf 97515899725467885120201048682124489964742-2113732021223150554175759
No 454
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=26.75 E-value=55 Score=14.92 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 29695999999982857689959999924998999999976998899
Q gi|254780476|r 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 57 p~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
|..--.++++++|+.. ++||+...+....+..+++++.|..|++
T Consensus 269 ~~g~~~~~a~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V 312 (343)
T cd04734 269 PPGPFLPLAARIKQAV---DLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred CCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 7643488999999972---9859997998999999999987996216
No 455
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.70 E-value=55 Score=14.92 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 99998279989999504129-695999999982857689959999924
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii~~t~~ 85 (123)
++.+.+-+||+||+...... .++-++.+++++ ..+|++.+...
T Consensus 84 ~E~il~l~PDvVi~~~~~~~~~~~~~~~~~l~~----~GIpVv~~~~~ 127 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQ----AGIPVVFVDFR 127 (342)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH----CCCCEEEEECC
T ss_conf 999962199889994434565445679999997----19988999468
No 456
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=26.67 E-value=55 Score=14.91 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf 999982799899995041296-95999999982857689959999924998999999976998899
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEI-SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~-dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l 103 (123)
.+.+.+.-.|+|++|..=-.. .-.++++.||+. +.++|||+ -+-...+-.+...++|++...
T Consensus 99 ~~~l~~ag~d~i~IDvAhG~~~~~~~~ik~ir~~--~p~~~Iia-GNV~T~e~a~~L~~~GaD~vk 161 (325)
T cd00381 99 AEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK--YPNVDVIA-GNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred HHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHH--CCCCCEEE-CCCCCHHHHHHHHHCCCCEEE
T ss_conf 9999976998999870003458899999999976--89975686-456689999999866998999
No 457
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=26.53 E-value=31 Score=16.33 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 899999999999789
Q gi|254780476|r 12 ELNMKLFRDLIETSG 26 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g 26 (123)
...++.+...+...|
T Consensus 16 ~~~~~~LA~kI~~~~ 30 (156)
T PRK09177 16 HRDARALAWRLLPAG 30 (156)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998508
No 458
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=26.49 E-value=16 Score=17.94 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHH------HCCCCE----E----EEEEECCCCC---HH--------HHHHH
Q ss_conf 9999999999978989999889799999998------279989----9----9950412969---59--------99999
Q gi|254780476|r 13 LNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDV----I----IMDIQLQEIS---GL--------EITKQ 67 (123)
Q Consensus 13 ~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~------~~~~dl----i----llD~~mp~~d---G~--------el~~~ 67 (123)
.....+...|+.+.+.-...=-|-||++.+. ++.|.+ + -++=|.|+-+ |. +.|-.
T Consensus 486 ~d~~~iA~~f~~~kiDgL~IIGGFEAf~al~qL~~aR~~YP~F~IPmv~iPATISNNVPGTe~SLG~DTaLN~i~~~cD~ 565 (777)
T TIGR02478 486 KDLGEIAYKFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDK 565 (777)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 53899999998609887999760368899999999986188557885786660107787244302201577789987263
Q ss_pred HHHCCCCCCCCEEEEEEC-CCHHHH--HHHHHCCCCE--EEECCCCHHHHHHHHHH
Q ss_conf 982857689959999924-998999--9999769988--99879898999999999
Q gi|254780476|r 68 IKEDSELQEIPVIAVTAF-AMKGDE--ERIRKGGCEA--YISKPISLSIFMETIKK 118 (123)
Q Consensus 68 ir~~~~~~~ipii~~t~~-~~~~~~--~~~~~~g~~~--~l~KPi~~~~L~~~i~~ 118 (123)
||+...-++-.+.++=.. ...++. .-.+..|++. .---||+.+.|-+-|..
T Consensus 566 IkqSA~askrRvFVvEtmGG~sGYLAt~~GLa~GA~a~Yi~Eegi~l~~L~~Di~~ 621 (777)
T TIGR02478 566 IKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGISLKDLQEDIEH 621 (777)
T ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 22353011475699997089716899999886462478864789788999999999
No 459
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=26.48 E-value=56 Score=14.89 Aligned_cols=68 Identities=26% Similarity=0.295 Sum_probs=36.7
Q ss_pred EEECCHHHHHHHHHHCCCCEEEEEEECC-------CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 9988979999999827998999950412-------969599999998285768995999992499899999997699889
Q gi|254780476|r 30 LQTRNGMEALELARQHKPDVIIMDIQLQ-------EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 30 ~~a~~g~eal~~l~~~~~dlillD~~mp-------~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
.++.+-.++.+ +.+...|.+++.--.| .--|++.++++++.. ++||+++-| -......++.+.|++++
T Consensus 100 ~S~h~~~e~~~-a~~~gaDYi~~gpvf~T~sK~~~~~~g~~~~~~~~~~~---~~Pv~AiGG-I~~~n~~~~~~~Ga~gv 174 (180)
T pfam02581 100 VSTHTLEEALE-AEALGADYIGFGPVFPTPTKPDAPPLGLEGLRAIAEAV---NIPVVAIGG-ITPENVPEVLEAGADGV 174 (180)
T ss_pred ECCCCHHHHHH-HHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC-CCHHHHHHHHHCCCCEE
T ss_conf 44788999999-98719980887476777999998878989999999858---999999909-89999999998599889
No 460
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.41 E-value=56 Score=14.89 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 89959999924998999999976998899879898999999999740
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~ 121 (123)
..+|+|+ |.... ..+....|.++|+..|-+.++|.++|.+++.
T Consensus 293 ~G~PvIa-t~~gg---~~e~v~~g~~G~l~~~~d~~~la~~i~~ll~ 335 (371)
T cd04962 293 CGVPVVA-SNAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CCCCEEE-CCCCC---HHHHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 6994998-68998---3899708971899789999999999999976
No 461
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.17 E-value=56 Score=14.86 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999828576899599999249------9899999997699889987989899
Q gi|254780476|r 62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI 111 (123)
Q Consensus 62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~ 111 (123)
|++++++|+. .++|+++++.++ .+....++.+.|+++.+.--+.+++
T Consensus 74 f~~~~~~r~~---~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE 126 (256)
T PRK13111 74 LELLREIRAK---PTIPIVLMTYYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEE 126 (256)
T ss_pred HHHHHHHHCC---CCCCEEEEEECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999998606---8998899850308987099999999997599779816999788
No 462
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.91 E-value=57 Score=14.83 Aligned_cols=101 Identities=10% Similarity=0.179 Sum_probs=61.1
Q ss_pred CEEEEECCCHH---HHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEE-CCCCCH--HHHHHHHHHCCCCC
Q ss_conf 77899539989---9999999999789899998897999999982-79989999504-129695--99999998285768
Q gi|254780476|r 3 KKVMIVEDNEL---NMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQ-LQEISG--LEITKQIKEDSELQ 75 (123)
Q Consensus 3 kkiLiVDD~~~---~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~-mp~~dG--~el~~~ir~~~~~~ 75 (123)
++|-+|--|.. -.+.++.+=.-.|+.+..+.+..+--..+.. ...++||+|.- |...|- .+-++.++.....
T Consensus 379 ~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~- 457 (557)
T PRK12727 379 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQV- 457 (557)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCC-
T ss_conf 8189997266408799999999998397579828999999999983699989994999884699999999987514776-
Q ss_pred CCCEEEEEECCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf 99599999249989999999----7699889-987
Q gi|254780476|r 76 EIPVIAVTAFAMKGDEERIR----KGGCEAY-ISK 105 (123)
Q Consensus 76 ~ipii~~t~~~~~~~~~~~~----~~g~~~~-l~K 105 (123)
-.++++++.....+..... ..+.+++ ++|
T Consensus 458 -~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TK 491 (557)
T PRK12727 458 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTK 491 (557)
T ss_pred -CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf -3599996889989999999985379987489961
No 463
>pfam01497 Peripla_BP_2 Periplasmic binding protein. This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport.
Probab=25.61 E-value=58 Score=14.80 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=36.7
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99998279989999504129695999999982857689959999924998999999976998899879898999999999
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
++.+..-.||+|+.+..... -+....+++ ..+|++.+.......+..+.++. +-..+.++=..+++...+++
T Consensus 53 ~E~i~~l~PDlVi~~~~~~~---~~~~~~~~~----~gipvv~~~~~~~~~~~~~~i~~-lg~~~g~~~~a~~~~~~~~~ 124 (236)
T pfam01497 53 VEKLAALKPDLIIGSAGIGL---TDKAYELLS----LIIPTVIFESSSTGEGILEQIRA-LGELLGLEDEAEELVAELDS 124 (236)
T ss_pred HHHHHHCCCCEEEEECCCCC---HHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHH
T ss_conf 99997159998997267673---689999995----79978994289998999999999-99996981789999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780476|r 119 YI 120 (123)
Q Consensus 119 ~l 120 (123)
.+
T Consensus 125 ~~ 126 (236)
T pfam01497 125 AI 126 (236)
T ss_pred HH
T ss_conf 99
No 464
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.52 E-value=58 Score=14.79 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 877899539989999999999978989999889799999998
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR 43 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~ 43 (123)
||+|||.=-+.-.=..+...|...|+.+..+.-..+.++.+.
T Consensus 1 MK~vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDTERLERIA 42 (243)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 997999157459999999999987998999989889999999
No 465
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=25.38 E-value=58 Score=14.77 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=51.6
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHH---HHHHHHCCCCEEEEE------------------E-ECCCCCHHH
Q ss_conf 9539989999999999978989999-8897999---999982799899995------------------0-412969599
Q gi|254780476|r 7 IVEDNELNMKLFRDLIETSGYIALQ-TRNGMEA---LELARQHKPDVIIMD------------------I-QLQEISGLE 63 (123)
Q Consensus 7 iVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~ea---l~~l~~~~~dlillD------------------~-~mp~~dG~e 63 (123)
+.-++.....-+.+.|-..|+.+.+ .-+...| ++.++++.|++++== + ..|+. --+
T Consensus 10 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t~~a~~~i~~l~~~~~~~~iGaGTV~~~~~~~~a~~aGa~FivsP~~-~~~ 88 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL-DPE 88 (190)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCC-CHH
T ss_conf 9779999999999999986998899967880299999999986898089652347799999999859989973779-999
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999998285768995999992499899999997699889987989
Q gi|254780476|r 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108 (123)
Q Consensus 64 l~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~ 108 (123)
+++.-++. ++|.+ .+-..+.+..++++.|++-.-.=|.+
T Consensus 89 v~~~a~~~----~~~~i--PGv~TpsEi~~A~~~G~~~vK~FPa~ 127 (190)
T cd00452 89 VVKAANRA----GIPLL--PGVATPTEIMQALELGADIVKLFPAE 127 (190)
T ss_pred HHHHHHHC----CCCEE--CCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999982----99665--78799999999998799989989551
No 466
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.36 E-value=58 Score=14.77 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=36.2
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 9999827998999950412969599999998285768995999992499-899999997699889987989899999999
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAYISKPISLSIFMETIK 117 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~-~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~ 117 (123)
++.+..-+||+|+..... +-+..+.+++ ..+|++.+..... .+........|- .+.|+=+.+++.+.++
T Consensus 53 ~E~i~~l~PDLVi~~~~~----~~~~~~~L~~----~gi~v~~~~~~~~~~~~~~~i~~lg~--i~g~~~~A~~l~~~~~ 122 (195)
T cd01143 53 VEKIVALKPDLVIVSSSS----LAELLEKLKD----AGIPVVVLPAASSLDEIYDQIELIGK--ITGAEEEAEKLVKEMK 122 (195)
T ss_pred HHHHHCCCCCEEEEECCC----CHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH
T ss_conf 999961699999982787----4779999864----18859997589999999999999999--9697477999999999
Q ss_pred HHH
Q ss_conf 974
Q gi|254780476|r 118 KYI 120 (123)
Q Consensus 118 ~~l 120 (123)
+.+
T Consensus 123 ~~~ 125 (195)
T cd01143 123 QKI 125 (195)
T ss_pred HHH
T ss_conf 999
No 467
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.35 E-value=58 Score=14.77 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=38.5
Q ss_pred CHHHHHHH---HHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 98999999---999997898999988979------999999827998999950412969599999998285768995999
Q gi|254780476|r 11 NELNMKLF---RDLIETSGYIALQTRNGM------EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 11 ~~~~~~~l---~~~l~~~g~~v~~a~~g~------eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~ 81 (123)
|+...+++ .+.++..||.+..+.+.. +.++.+.+..+|-|++- |..+..+.... +. ..+|+|+
T Consensus 11 npf~~~i~~gi~~~~~~~gy~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~~---~~~~~~~~~~~-~~----~~~P~V~ 82 (263)
T cd06280 11 NPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFA---PTRATLRRLAE-LR----LSFPVVL 82 (263)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHH-HC----CCCCEEE
T ss_conf 7899999999999999869989999789998999999999981698799987---88787679999-70----8996899
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 82 VT 83 (123)
Q Consensus 82 ~t 83 (123)
+.
T Consensus 83 id 84 (263)
T cd06280 83 ID 84 (263)
T ss_pred EC
T ss_conf 92
No 468
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=25.29 E-value=48 Score=15.27 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=7.0
Q ss_pred CEEEEECCCHHHHHHH
Q ss_conf 7789953998999999
Q gi|254780476|r 3 KKVMIVEDNELNMKLF 18 (123)
Q Consensus 3 kkiLiVDD~~~~~~~l 18 (123)
||||||||=....+.+
T Consensus 88 kkVLIVDDI~DTG~Tl 103 (192)
T COG2236 88 KKVLIVDDIVDTGETL 103 (192)
T ss_pred CEEEEEECCCCCHHHH
T ss_conf 8589982333761769
No 469
>PRK08006 replicative DNA helicase; Provisional
Probab=25.26 E-value=59 Score=14.76 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=38.1
Q ss_pred HHHHHHCCCEEEEEC--CHHHH----HHHHHHC-CCCEEEEEEE--C--CCCCH------HHHHHHHHHCCCCCCCCEEE
Q ss_conf 999997898999988--97999----9999827-9989999504--1--29695------99999998285768995999
Q gi|254780476|r 19 RDLIETSGYIALQTR--NGMEA----LELARQH-KPDVIIMDIQ--L--QEISG------LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 19 ~~~l~~~g~~v~~a~--~g~ea----l~~l~~~-~~dlillD~~--m--p~~dG------~el~~~ir~~~~~~~ipii~ 81 (123)
...++.+.+.+.... +-.+- .++.+++ ..++|++|+- | |...+ -++.+.+|....--++|||+
T Consensus 302 ~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~~~~r~~ei~~isr~lK~lAkel~ipVi~ 381 (471)
T PRK08006 302 GILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVA 381 (471)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99975188577368999899999999999986489868996388661678744106689999999999999996996899
Q ss_pred EEECC
Q ss_conf 99249
Q gi|254780476|r 82 VTAFA 86 (123)
Q Consensus 82 ~t~~~ 86 (123)
++=-+
T Consensus 382 LsQLn 386 (471)
T PRK08006 382 LSQLN 386 (471)
T ss_pred ECCCC
T ss_conf 70168
No 470
>PRK13555 azoreductase; Provisional
Probab=25.25 E-value=59 Score=14.76 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=10.1
Q ss_pred CCEEEEECCCHH
Q ss_conf 877899539989
Q gi|254780476|r 2 LKKVMIVEDNEL 13 (123)
Q Consensus 2 ~kkiLiVDD~~~ 13 (123)
|+|||.|+-++.
T Consensus 1 M~kiL~I~aS~r 12 (208)
T PRK13555 1 MSKVLFVKANDR 12 (208)
T ss_pred CCEEEEEECCCC
T ss_conf 982799977899
No 471
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=24.99 E-value=59 Score=14.73 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCEEEEECCHHHHHH---HHHHCCCCEEEEEEE-CCCCC
Q ss_conf 9999999978989999889799999---998279989999504-12969
Q gi|254780476|r 16 KLFRDLIETSGYIALQTRNGMEALE---LARQHKPDVIIMDIQ-LQEIS 60 (123)
Q Consensus 16 ~~l~~~l~~~g~~v~~a~~g~eal~---~l~~~~~dlillD~~-mp~~d 60 (123)
+.++...+.-.=.+.|+.+|-.|.+ .+++.-.|+|++|.. +|..+
T Consensus 105 ~~~~~~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dVIVtDHHC~~~~~ 153 (705)
T TIGR00644 105 EALRELKENGVSLIITVDNGISAHEEIEYAKELGIDVIVTDHHCLPPET 153 (705)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 9999998669839998268742699999998669819997256798489
No 472
>PRK05973 replicative DNA helicase; Provisional
Probab=24.94 E-value=59 Score=14.72 Aligned_cols=41 Identities=7% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCCCEEEEEEE--CCCCCHH-HH---HHHHHHCCCCCCCCEEEEEEC
Q ss_conf 79989999504--1296959-99---999982857689959999924
Q gi|254780476|r 45 HKPDVIIMDIQ--LQEISGL-EI---TKQIKEDSELQEIPVIAVTAF 85 (123)
Q Consensus 45 ~~~dlillD~~--mp~~dG~-el---~~~ir~~~~~~~ipii~~t~~ 85 (123)
+..++|++||- |-..+.. |+ .+.+|...+-..+|||++|=-
T Consensus 146 ~~~~LIVIDYLQLM~~~r~~~eiseisRsLK~lAkEl~vPVvaLSQL 192 (237)
T PRK05973 146 PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARKRGVILVFISQI 192 (237)
T ss_pred CCCCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 89968999767752667788668999999999999869939994003
No 473
>PRK08840 replicative DNA helicase; Provisional
Probab=24.76 E-value=60 Score=14.71 Aligned_cols=66 Identities=23% Similarity=0.391 Sum_probs=37.1
Q ss_pred HHHHCCCEEEEECC--HHH----HHHHHHHC-CCCEEEEEEE--C--CCCCH------HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99978989999889--799----99999827-9989999504--1--29695------9999999828576899599999
Q gi|254780476|r 21 LIETSGYIALQTRN--GME----ALELARQH-KPDVIIMDIQ--L--QEISG------LEITKQIKEDSELQEIPVIAVT 83 (123)
Q Consensus 21 ~l~~~g~~v~~a~~--g~e----al~~l~~~-~~dlillD~~--m--p~~dG------~el~~~ir~~~~~~~ipii~~t 83 (123)
+.+...+.+....+ -.+ +.++.+.+ ..++|++|+- | |+..+ -++.+.+|....--++|||+++
T Consensus 297 ~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~~~~r~~~i~~isr~lK~lAkel~vpVv~ls 376 (464)
T PRK08840 297 LMEKKNMYIDDSSGLTPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPALQDNRTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 98479958856998757999999999998648987899618866067886403678999999999999999699899963
Q ss_pred ECC
Q ss_conf 249
Q gi|254780476|r 84 AFA 86 (123)
Q Consensus 84 ~~~ 86 (123)
=-+
T Consensus 377 QLn 379 (464)
T PRK08840 377 QLN 379 (464)
T ss_pred CCC
T ss_conf 168
No 474
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.73 E-value=60 Score=14.70 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCE
Q ss_conf 89999999999978989------999889799---999998279989999504129695---999999982857689959
Q gi|254780476|r 12 ELNMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPV 79 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipi 79 (123)
....+...++|+..|.. ..+.+.|+. |+..+-...|+++++|=-....|- .++...|++...-..+.+
T Consensus 111 ~e~~~rv~~~l~~v~l~~~~~~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP~s~LD~~~~~~i~~~l~~l~~e~~~T~ 190 (239)
T cd03296 111 AEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190 (239)
T ss_pred HHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99999999998654997677489666999898999999987649998997388664699999999999999999859989
Q ss_pred EEEEEC
Q ss_conf 999924
Q gi|254780476|r 80 IAVTAF 85 (123)
Q Consensus 80 i~~t~~ 85 (123)
|++|..
T Consensus 191 i~vTHd 196 (239)
T cd03296 191 VFVTHD 196 (239)
T ss_pred EEECCC
T ss_conf 999889
No 475
>PRK13136 consensus
Probab=24.66 E-value=60 Score=14.69 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCC-----HHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 9999998285768995999992499-----89999999769988998798989
Q gi|254780476|r 63 EITKQIKEDSELQEIPVIAVTAFAM-----KGDEERIRKGGCEAYISKPISLS 110 (123)
Q Consensus 63 el~~~ir~~~~~~~ipii~~t~~~~-----~~~~~~~~~~g~~~~l~KPi~~~ 110 (123)
++++.+|+ ..++|++++|.++. +....++.++|+++.+.--+..+
T Consensus 78 ~~v~~~r~---~~~~pivlM~Y~N~i~~~G~~f~~~~~~~GvdGlIipDLP~e 127 (253)
T PRK13136 78 TLITSFRQ---HSEIPIILFTYFNPLLAAGDKIYQQMKSAGVDGCLVVDLPVE 127 (253)
T ss_pred HHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHH
T ss_conf 99998225---789888998651799997999999999749872006789977
No 476
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.63 E-value=60 Score=14.69 Aligned_cols=113 Identities=14% Similarity=0.026 Sum_probs=64.8
Q ss_pred CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 7789-953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVM-IVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiL-iVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
|||- +.+|+. ...+.+...++..|.++... .+-...+..+++..||+|++-. ..-++..++++.|+.
T Consensus 138 kkvail~~~~~yG~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~~pD~v~~~~--~~~~~~~~~kq~~~~ 215 (312)
T cd06346 138 KSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIG--YPETGSGILRSAYEQ 215 (312)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf 648999957726699999999999987998999996699984559999999866999999946--734799999999975
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCC-EEEECCCCH----HHHHHHHHHH
Q ss_conf 57689959999924998999999976998-899879898----9999999997
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGDEERIRKGGCE-AYISKPISL----SIFMETIKKY 119 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~-~~l~KPi~~----~~L~~~i~~~ 119 (123)
. -..|++.-++...+......-...+. -|..-|... +.|.+.-++.
T Consensus 216 G--~~~~~~~~~g~~~~~~~~~~g~~~~~g~~~~~p~~~~~~~~~F~~~y~~~ 266 (312)
T cd06346 216 G--LFDKFLLTDGMKSDSFLPADGGYILAGSYGTSPGAGGPGLEAFTSAYKAA 266 (312)
T ss_pred C--CCCCEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9--99977964455687899987799748568927799987999999999998
No 477
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=24.62 E-value=60 Score=14.69 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=31.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 899599999249989999999769988998798989999999997403
Q gi|254780476|r 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 (123)
Q Consensus 75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 122 (123)
..+|||. |..+. ..+....|-++|+.+|-++++|.+.+.+.+..
T Consensus 298 ~G~PvI~-t~~gg---~~e~i~~~~~G~l~~~~d~~~l~~~i~~l~~~ 341 (374)
T cd03801 298 AGLPVVA-SDVGG---IPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred CCCCEEE-CCCCC---HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 6998999-78997---58885189718997899999999999999779
No 478
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.56 E-value=60 Score=14.68 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHCCCEEE--E-ECCHHHHHHHHHHCCCCEEEEEEECCCCCH-------HHHHHHHHHCCCCCCCCEEE
Q ss_conf 8999999999997898999--9-889799999998279989999504129695-------99999998285768995999
Q gi|254780476|r 12 ELNMKLFRDLIETSGYIAL--Q-TRNGMEALELARQHKPDVIIMDIQLQEISG-------LEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 12 ~~~~~~l~~~l~~~g~~v~--~-a~~g~eal~~l~~~~~dlillD~~mp~~dG-------~el~~~ir~~~~~~~ipii~ 81 (123)
+...+.+...++..|.... . -.+..+-++.+.......|-+ .+-+.+| -+..+++|+.. .++||.+
T Consensus 118 ~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~gFvY~--~~~gvTG~~~~~~~~~~i~~ik~~~--~~~Pv~v 193 (247)
T PRK13125 118 PDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSPLFIYL--GLYPATGVELPVYVERNIKRVRELV--GDVYLVA 193 (247)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE--EEECCCCCCCCCCHHHHHHHHHHHC--CCCCEEE
T ss_conf 67899999999976984699957998199999999868977999--9443678877325999999999856--9998588
Q ss_pred EEECCCHHHHHHHHHCCCCEEEECC----------C-CHHHHHHHHHHHHHC
Q ss_conf 9924998999999976998899879----------8-989999999997403
Q gi|254780476|r 82 VTAFAMKGDEERIRKGGCEAYISKP----------I-SLSIFMETIKKYIGE 122 (123)
Q Consensus 82 ~t~~~~~~~~~~~~~~g~~~~l~KP----------i-~~~~L~~~i~~~l~~ 122 (123)
=-|-..+++..+..+.|+|+.+.-- . ....+...++++|++
T Consensus 194 GFGI~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~~~v~~l~~al~e 245 (247)
T PRK13125 194 GFAIDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEALSLLKEIRGALDE 245 (247)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 3287999999999855899999878999999976989999999999999852
No 479
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=53 Score=15.01 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=44.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 87789953998999999999997-8989999---8897999999982799899995041296959999999828576899
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIET-SGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i 77 (123)
.||+-|||........+...=+. .|..+.. +.-.+--+.+++++.|++|++|-- .-.+=+..++..-. .-+
T Consensus 170 ~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEI----Gt~~d~~A~~ta~~-~GV 244 (308)
T COG3854 170 PKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEI----GTEEDALAILTALH-AGV 244 (308)
T ss_pred CCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECC----CCHHHHHHHHHHHH-CCC
T ss_conf 7328997150043034358860323221010465617888999999549957998343----64777999999985-485
Q ss_pred CEEEEEECCC
Q ss_conf 5999992499
Q gi|254780476|r 78 PVIAVTAFAM 87 (123)
Q Consensus 78 pii~~t~~~~ 87 (123)
.+ +.|++.+
T Consensus 245 kl-i~TaHG~ 253 (308)
T COG3854 245 KL-ITTAHGN 253 (308)
T ss_pred EE-EEEECCC
T ss_conf 89-9950441
No 480
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=24.30 E-value=61 Score=14.65 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 96959999999828576899599999249989999999769988998798989999999997
Q gi|254780476|r 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 (123)
Q Consensus 58 ~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~ 119 (123)
.-+--+..+++|+ ..+.++|+||-.......-+.+.|+++|+.. ..|++=++.|++.
T Consensus 452 Rp~a~eaI~~Lr~----~GI~vvMITGDn~~TA~aIA~elGIDd~~A~-~tPedKl~iVk~L 508 (684)
T PRK01122 452 KPGIKERFAQLRK----MGIKTVMITGDNPLTAAAIAAEAGVDDFLAE-ATPEDKLALIRQE 508 (684)
T ss_pred CHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCCHHHHHC-CCHHHHHHHHHHH
T ss_conf 7549999999998----7992999989896999999998495655657-9999999999999
No 481
>PRK01659 consensus
Probab=24.27 E-value=61 Score=14.65 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=47.3
Q ss_pred HHHHHHHHCCC-CEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH-CCCCEEEE------C
Q ss_conf 99999982799-899995041296-95--99999998285768995999992499899999997-69988998------7
Q gi|254780476|r 37 EALELARQHKP-DVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK-GGCEAYIS------K 105 (123)
Q Consensus 37 eal~~l~~~~~-dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~-~g~~~~l~------K 105 (123)
+.++.+.+... .+++.|+.-.++ .| +++++.+++. .++|+|+-.+-...++..++++ .++++.+. +
T Consensus 157 ~~i~~~~~~g~geil~tdI~rDG~~~G~dl~l~~~i~~~---~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~~ 233 (252)
T PRK01659 157 AWAKEAVRLGAGEILLTSMDADGTKNGFDLRLTKAISEA---VSVPVIASGGAGNADHMVEVFQKTTADAALAASIFHYG 233 (252)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 999999976997799998814585476898999999986---89999999179999999999974898265575477779
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9898999999999
Q gi|254780476|r 106 PISLSIFMETIKK 118 (123)
Q Consensus 106 Pi~~~~L~~~i~~ 118 (123)
-+++.++.+.+++
T Consensus 234 ~~sl~e~k~~L~~ 246 (252)
T PRK01659 234 ETSIKEVKAKLRE 246 (252)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9999999999998
No 482
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=24.26 E-value=61 Score=14.65 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=42.5
Q ss_pred HCCCCEEEEEEECCC----CCH----------HHHHHHHHHCCCCCCCCEEEEEECCCHHHHH----HHHHCCCC--EEE
Q ss_conf 279989999504129----695----------9999999828576899599999249989999----99976998--899
Q gi|254780476|r 44 QHKPDVIIMDIQLQE----ISG----------LEITKQIKEDSELQEIPVIAVTAFAMKGDEE----RIRKGGCE--AYI 103 (123)
Q Consensus 44 ~~~~dlillD~~mp~----~dG----------~el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~~~~~g~~--~~l 103 (123)
...|.+=++-+.+|. ..| -|..+..++.....++|-|++|+.-....-. -+.++|++ +||
T Consensus 196 ~~~ygvDvlKvE~Pvn~~~veg~~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGasf~G~L 275 (326)
T PRK04161 196 DKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLYFAAEAGAQFNGVL 275 (326)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 44569977985267760010245766541369999999999873539997998399998999999999998699845676
Q ss_pred E
Q ss_conf 8
Q gi|254780476|r 104 S 104 (123)
Q Consensus 104 ~ 104 (123)
-
T Consensus 276 ~ 276 (326)
T PRK04161 276 C 276 (326)
T ss_pred E
T ss_conf 5
No 483
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.23 E-value=61 Score=14.64 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=33.4
Q ss_pred CCHHHHHHHH---HHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 9989999999---9999789899998897------999999982799899995041296959999999828576899599
Q gi|254780476|r 10 DNELNMKLFR---DLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI 80 (123)
Q Consensus 10 D~~~~~~~l~---~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii 80 (123)
+|+...++++ ..+...||.+..+.++ .+.++.+.++.+|-|++--.-+ --+..+.+++ ..+|+|
T Consensus 10 ~npf~~~i~~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDgiIl~~~~~---~~~~~~~~~~----~~iPvV 82 (267)
T cd06283 10 TNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGN---NKELYQRLAK----NGKPVV 82 (267)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC---CHHHHHHHHH----CCCCEE
T ss_conf 759999999999999998699899997899989999999999966999999858779---9899999997----699899
Q ss_pred EE
Q ss_conf 99
Q gi|254780476|r 81 AV 82 (123)
Q Consensus 81 ~~ 82 (123)
.+
T Consensus 83 ~i 84 (267)
T cd06283 83 LV 84 (267)
T ss_pred EE
T ss_conf 96
No 484
>KOG2550 consensus
Probab=24.08 E-value=62 Score=14.63 Aligned_cols=96 Identities=26% Similarity=0.378 Sum_probs=62.6
Q ss_pred EEEEECCCHHHHHHHH--HHHHHCCCE---------------EEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHH
Q ss_conf 7899539989999999--999978989---------------999889799999998279989999504129-6959999
Q gi|254780476|r 4 KVMIVEDNELNMKLFR--DLIETSGYI---------------ALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEIT 65 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~--~~l~~~g~~---------------v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~ 65 (123)
|..||||+-....++. ++.++.+|- +-+-++.++-++++.+--.|+|++|..=-. .--++..
T Consensus 204 kl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi 283 (503)
T KOG2550 204 KLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI 283 (503)
T ss_pred CCCEECCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 65234367762334333456650278755567541356510136663016778886634886899966888504579999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 9998285768995999992499899999997699889
Q gi|254780476|r 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 66 ~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+.||+ .+.++.||. ..-......++.+.+|+++.
T Consensus 284 k~iK~--~yP~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550 284 KYIKE--TYPDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred HHHHH--HCCCCEEEC-CCEEEHHHHHHHHHCCCCEE
T ss_conf 99986--688863431-65533888999987367605
No 485
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=24.06 E-value=62 Score=14.63 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 799899995041296959999999828576899599999249989999999769988998798989999999
Q gi|254780476|r 45 HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 (123)
Q Consensus 45 ~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i 116 (123)
...|++++.-.+|.--..+++.++-+.-+.+..++++=++ .......++.++.-++.|| +..+|.+.+
T Consensus 125 ~~~d~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD~s---g~~L~~~l~~~~~P~lIKP-N~~El~~l~ 192 (309)
T PRK13508 125 EKVEVVAISGSLPAGLPQDYYAQLIELANNKGKKVVLDCS---GAALQAVLKSPYKPTVIKP-NIEELSQLL 192 (309)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHCCCCCCEECC-CHHHHHHHH
T ss_conf 5599999968889999859999999999855998999897---6999999846577727745-989999983
No 486
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.00 E-value=62 Score=14.62 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEE-EEEEECCC-CCHH----------HHHHHHH
Q ss_conf 8778995399899999999999789899998897999999982799899-99504129-6959----------9999998
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVI-IMDIQLQE-ISGL----------EITKQIK 69 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dli-llD~~mp~-~dG~----------el~~~ir 69 (123)
+.++|++|-|...-+++.+.. .|.+ -...-+.+.++++|++ ++|..-|- -||+ ++-..++
T Consensus 302 AnklLFcDTD~ltT~vyse~Y--~g~~------~P~l~~~a~~~~yDL~Lll~~DvpwVdDGlRd~~~~~~R~~f~~~lk 373 (411)
T PRK08099 302 ANKVAFIDTDFVTTQAFCKKY--EGRE------HPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKRFQNLLV 373 (411)
T ss_pred CCCEEEEECCHHHHHHHHHHH--CCCC------CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 597699838499999999997--3899------88999998635877899808998755678766678889999999999
Q ss_pred HCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 28576899599999249989999999
Q gi|254780476|r 70 EDSELQEIPVIAVTAFAMKGDEERIR 95 (123)
Q Consensus 70 ~~~~~~~ipii~~t~~~~~~~~~~~~ 95 (123)
+.-.-.++|-+.+-+-+..+..+++.
T Consensus 374 ~lL~k~ni~yv~I~~~~y~eR~~kAi 399 (411)
T PRK08099 374 EMLEENNIEYVRVESPDYDARFLRCV 399 (411)
T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 99998199769971788899999999
No 487
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=23.95 E-value=62 Score=14.61 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=21.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEE-ECCHHHHHHHHHHCCCCEEEE
Q ss_conf 7899539989999999999978989--999-889799999998279989999
Q gi|254780476|r 4 KVMIVEDNELNMKLFRDLIETSGYI--ALQ-TRNGMEALELARQHKPDVIIM 52 (123)
Q Consensus 4 kiLiVDD~~~~~~~l~~~l~~~g~~--v~~-a~~g~eal~~l~~~~~dlill 52 (123)
+|.-+|=++...++.+......|.. +.. .++ .++.+...+||+|+.
T Consensus 147 ~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D---~~~~~~~~~fDlIVS 195 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSD---LFAALPGRKYDLIVS 195 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC---HHHHCCCCCCCEEEE
T ss_conf 7999989999999999999860854336888351---433145777787997
No 488
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=23.91 E-value=62 Score=14.61 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=54.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH-HHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC-CCCCCCE
Q ss_conf 877899539989999999999978989999889799999-99827998999950412969599999998285-7689959
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGLEITKQIKEDS-ELQEIPV 79 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~-~l~~~~~dlillD~~mp~~dG~el~~~ir~~~-~~~~ipi 79 (123)
.+.+.+||-++..++.-+.+++...-. .......+... ...-.+.|+|++.+.+-++..-+-...+++.= .+. .+
T Consensus 59 l~~~~~vd~s~~m~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~DLVi~sy~L~El~~~~R~~~v~~LW~~~~--g~ 135 (275)
T pfam09243 59 LEPATVIDASEAALAIGEELARHIPAL-KHAWRARDVIGAALDFEPADLVTISYVLDELTPASREKVIDNLWAKAA--QA 135 (275)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCC-CCCEECCCCCCCCCCCCCCCEEEEECHHCCCCHHHHHHHHHHHHHHCC--CE
T ss_conf 768999748999999999998518434-543111431011245898788996142207997899999999999539--97
Q ss_pred EEEEECCCHHH-------HHHHHHCCCCEEEECCC
Q ss_conf 99992499899-------99999769988998798
Q gi|254780476|r 80 IAVTAFAMKGD-------EERIRKGGCEAYISKPI 107 (123)
Q Consensus 80 i~~t~~~~~~~-------~~~~~~~g~~~~l~KPi 107 (123)
+++...+.+.- ++..++.|+ ++.-|.
T Consensus 136 LVlVEpGtp~Gf~~I~~aR~~ll~~g~--hivAPC 168 (275)
T pfam09243 136 LVIVEPGTPAGWRRVLEARERLIAAGF--HIAAPC 168 (275)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCC--EEEEEC
T ss_conf 999918981799999999999986899--899719
No 489
>PRK06756 flavodoxin; Provisional
Probab=23.89 E-value=62 Score=14.61 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCEEEE------EEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 98999999999997898999988--9799999998279989999------504129695999999982857689959999
Q gi|254780476|r 11 NELNMKLFRDLIETSGYIALQTR--NGMEALELARQHKPDVIIM------DIQLQEISGLEITKQIKEDSELQEIPVIAV 82 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~v~~a~--~g~eal~~l~~~~~dlill------D~~mp~~dG~el~~~ir~~~~~~~ipii~~ 82 (123)
.+...+.+.+-++..|.+|.... +... ...+. .+|.+++ |-.||+ +-.+++..++.. .++..++-++
T Consensus 5 TE~mA~~Ia~g~~~~G~~V~~~~~~~~~~-~~~l~--~~d~~ilGspT~g~g~lp~-~~~~f~~~l~~~-~l~gk~~a~F 79 (138)
T PRK06756 5 TEEMADHIAGVIRETENEIEVIDIMDSPE-ASILE--QYDGIILGAYTWGDGDLPD-DFLDFYDAMDSI-DLTGKKAAVF 79 (138)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCC-HHHHH--HCCEEEEECCCCCCCCCCH-HHHHHHHHHHHC-CCCCCEEEEE
T ss_conf 99999999999997699079997026773-76897--5897999888768783777-899999998626-4479769999
Q ss_pred EE----CCCH-----HHHHHHHHCCCCEEEECCC
Q ss_conf 92----4998-----9999999769988998798
Q gi|254780476|r 83 TA----FAMK-----GDEERIRKGGCEAYISKPI 107 (123)
Q Consensus 83 t~----~~~~-----~~~~~~~~~g~~~~l~KPi 107 (123)
-+ +.+. ...++..+.|+.-+ ..|+
T Consensus 80 GsgD~~Yg~~g~av~~~~~~l~~~Ga~~~-~~~l 112 (138)
T PRK06756 80 GSCDSAYPKYGVAVDILIEKLQERGAAVV-LEGL 112 (138)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCEEC-CCCE
T ss_conf 33787666537579999999997799674-7876
No 490
>PRK09932 glycerate kinase II; Provisional
Probab=23.87 E-value=62 Score=14.60 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=45.9
Q ss_pred CCCCEEEE-----EEE-CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE---EECCCCHHHHHHH
Q ss_conf 79989999-----504-12969599999998285768995999992499899999997699889---9879898999999
Q gi|254780476|r 45 HKPDVIIM-----DIQ-LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY---ISKPISLSIFMET 115 (123)
Q Consensus 45 ~~~dlill-----D~~-mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~---l~KPi~~~~L~~~ 115 (123)
..-|+|+. |.+ +-+.-=..+++.-++ ..+|+|++.++-..+ .+...+.|++.+ +.+|.+.++-++.
T Consensus 283 ~~aDLVITGEG~~D~Qtl~GK~p~gVa~~A~~----~~~Pviai~G~~~~~-~~~~~~~Gi~a~fsi~~~~~sL~~a~~~ 357 (381)
T PRK09932 283 QGAALVITGEGRIDSQTAGGKAPLGVASVAKQ----FNVPVIGIAGVLGDG-VEVVHQYGIDAVFSILPRLAPLAEVLAS 357 (381)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCCC-HHHHHHCCCCEEEECCCCCCCHHHHHHH
T ss_conf 78999998998776668898859999999998----499989996245888-7889864984999779999899999997
Q ss_pred HHHHH
Q ss_conf 99974
Q gi|254780476|r 116 IKKYI 120 (123)
Q Consensus 116 i~~~l 120 (123)
-.+.|
T Consensus 358 a~~~L 362 (381)
T PRK09932 358 GETNL 362 (381)
T ss_pred HHHHH
T ss_conf 99999
No 491
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.74 E-value=63 Score=14.59 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=53.2
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 77899539989----9999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r 3 KKVMIVEDNEL----NMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED 71 (123)
Q Consensus 3 kkiLiVDD~~~----~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~ 71 (123)
|||-++.+|.. ....+++.++..|.++... .+-...+..+++..||+|++-. ...++..++++.++.
T Consensus 145 k~vav~~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~D~s~~v~~l~~~~pd~v~~~~--~~~~~~~~~~~~~~~ 222 (344)
T cd06345 145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGF--SGNVGVLFTQQWAEQ 222 (344)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHC
T ss_conf 499999607245599999999998753975999996589764549999999865999999906--743699999999975
Q ss_pred CCCCCCCEEEEEECCCHHH
Q ss_conf 5768995999992499899
Q gi|254780476|r 72 SELQEIPVIAVTAFAMKGD 90 (123)
Q Consensus 72 ~~~~~ipii~~t~~~~~~~ 90 (123)
.- ..+++.++.......
T Consensus 223 g~--~~~~~~~~~~~~~~~ 239 (344)
T cd06345 223 KV--PIPTIGISVEGNSPA 239 (344)
T ss_pred CC--CCCEEEEECCCCCHH
T ss_conf 99--988699974767888
No 492
>PRK05586 biotin carboxylase; Validated
Probab=23.64 E-value=63 Score=14.58 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 987789953998999999999997898999988979999
Q gi|254780476|r 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL 39 (123)
Q Consensus 1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal 39 (123)
|.|||||..--+..+++++. +..+|++.....+..+..
T Consensus 1 M~~kvLIANRGEIA~Ri~rt-~~~lgi~tVavys~~D~~ 38 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRA-CREMGIETVAVYSEIDKD 38 (447)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHCCCCEEEECCCCCCC
T ss_conf 97549998987999999999-998399599991703367
No 493
>PRK06141 ornithine cyclodeaminase; Validated
Probab=23.19 E-value=64 Score=14.53 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=35.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
Q ss_conf 8778995399899999999999789899998897999999
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL 41 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~ 41 (123)
-++|.|.+-++..++.+.+.++..|+.+..+.+.++|++-
T Consensus 150 i~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~av~~ 189 (313)
T PRK06141 150 IKQVRVWGRNPAKAAALAAELREQGFDAEVVTDLEAAVRQ 189 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 7589999389899999999998509975995899998610
No 494
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=23.13 E-value=65 Score=14.52 Aligned_cols=105 Identities=14% Similarity=0.258 Sum_probs=56.8
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEE--------ECCHHHHHHHHHHC-CCC--------------EEEEEEECCCCCHH
Q ss_conf 99539989999999999978989999--------88979999999827-998--------------99995041296959
Q gi|254780476|r 6 MIVEDNELNMKLFRDLIETSGYIALQ--------TRNGMEALELARQH-KPD--------------VIIMDIQLQEISGL 62 (123)
Q Consensus 6 LiVDD~~~~~~~l~~~l~~~g~~v~~--------a~~g~eal~~l~~~-~~d--------------lillD~~mp~~dG~ 62 (123)
.+||..+...+.++..++..|+.+.. ..+..+.++.+..+ ..+ .-+.+-.++.+.|.
T Consensus 14 tLvDSe~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~pga 93 (221)
T PRK10563 14 TLVDSEVICSRAYVTMFREFGITLDLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEHVYRAEVARLFDTELEAIAGA 93 (221)
T ss_pred CHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 84438999999999999986999899999998179979999999999739999999999999999999876358707139
Q ss_pred -HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE------------ECCCCHHHHHHHHHH
Q ss_conf -99999982857689959999924998999999976998899------------879898999999999
Q gi|254780476|r 63 -EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI------------SKPISLSIFMETIKK 118 (123)
Q Consensus 63 -el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l------------~KPi~~~~L~~~i~~ 118 (123)
++++++ .+|+.++|+.............|..+|+ .|| +|+-++.++++
T Consensus 94 ~elL~~l-------~~~~aivS~~~~~~~~~~L~~~gl~~~F~d~ivs~ddv~~~KP-~Pdiyl~A~~~ 154 (221)
T PRK10563 94 NALLESI-------TVPMCVVSNGPVSKMQHSLGKLGMLHYFPDKLFSGYDIQRWKP-DPALMFHAAEA 154 (221)
T ss_pred HHHHHHC-------CCCCEEEECCHHHHHHHHHHHCCCHHHCCCEEECHHHCCCCCC-CCHHHHHHHHH
T ss_conf 9999966-------8997898498799999999975982516878971100678998-80999999998
No 495
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=23.06 E-value=65 Score=14.51 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 979999999827998999950412969-599999998285768995999992499899999997699889
Q gi|254780476|r 34 NGMEALELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY 102 (123)
Q Consensus 34 ~g~eal~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~ 102 (123)
+..+-.+.+-+.-.|++++|.-=-+-. =++..++||+ .+.+++||+ ..-...+-.....++|++.+
T Consensus 227 d~~eR~~aLv~AGvDvlvIDtAHGhS~~vi~~vk~iK~--~~p~~~via-GNvaT~~~a~~Li~aGad~i 293 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVIDTAHGHQEKMLEAIRAVRA--LDPGVPLVA-GNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEE-EEHHHHHHHHHHHHCCCCEE
T ss_conf 58999999997699899975457664899999999984--089885787-43202999999997399976
No 496
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , . Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2. Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=22.98 E-value=58 Score=14.80 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEE
Q ss_conf 599999998285768995999
Q gi|254780476|r 61 GLEITKQIKEDSELQEIPVIA 81 (123)
Q Consensus 61 G~el~~~ir~~~~~~~ipii~ 81 (123)
|+|..+.|=++++++.||+|+
T Consensus 270 G~d~f~~~~~d~~~~~iP~~L 290 (318)
T TIGR00587 270 GFDAFRLLMQDERLKGIPIIL 290 (318)
T ss_pred CHHHHHHHHCCCCCCCCCCEE
T ss_conf 668899974373101588366
No 497
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.96 E-value=65 Score=14.50 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
Q ss_conf 98999999999997898999988979999999827998999950412969599999998285768995999992499899
Q gi|254780476|r 11 NELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGD 90 (123)
Q Consensus 11 ~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~ 90 (123)
+......+...|+..|.....++.| .+...+--+....|...-.++++.+|+.-. +||+...+....+.
T Consensus 222 ~~~e~~~~~~~l~~~GvD~i~vs~G--------~~~~~~~~~~~~~p~g~~~~~a~~ir~~~~---~Pvi~~G~i~~p~~ 290 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNTGIG--------WHEARVPTIATSVPRGAFAWATAKLKRAVD---IPVIASNRINTPEV 290 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCEEECCCCCCHHH
T ss_conf 9999999999999819999996377--------444668753345772366999999887548---34896599798999
Q ss_pred HHHHHHCCCCEEE
Q ss_conf 9999976998899
Q gi|254780476|r 91 EERIRKGGCEAYI 103 (123)
Q Consensus 91 ~~~~~~~g~~~~l 103 (123)
.+++++.|..|++
T Consensus 291 ae~~l~~g~aD~V 303 (353)
T cd02930 291 AERLLADGDADMV 303 (353)
T ss_pred HHHHHHCCCCCHH
T ss_conf 9999987996247
No 498
>PRK05693 short chain dehydrogenase; Provisional
Probab=22.93 E-value=65 Score=14.50 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 877899539989999999999978989999889799999998279989999504
Q gi|254780476|r 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 (123)
Q Consensus 2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~ 55 (123)
||-|||.=-+.-.=..+...|...|+.|..+.--.+.++.+.+..+..+-+|+.
T Consensus 1 MKvvlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dvt 54 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVN 54 (274)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECC
T ss_conf 998999488858999999999987999999979999999998489918998469
No 499
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=22.87 E-value=65 Score=14.49 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99998279989999504129695999999982857689959999924998999999976998899879898999999999
Q gi|254780476|r 39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 (123)
Q Consensus 39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~ 118 (123)
++.+..-.||+|+..... +-+...++++.. |++++.......+....++. .-..+.|+=..+++.+.+++
T Consensus 58 ~E~i~~l~PDLIi~~~~~----~~~~~~~L~~ia-----p~v~~~~~~~~~~~~~~i~~-lg~~~g~~~~A~~~i~~~~~ 127 (256)
T cd01146 58 LEAIAALKPDLILGSASR----HDEIYDQLSQIA-----PTVLLDSSPWLAEWKENLRL-IAKALGKEEEAEKLLAEYDQ 127 (256)
T ss_pred HHHHHCCCCCEEEECCCC----CHHHHHHHHHHC-----CCCCCCCCCCHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHH
T ss_conf 999960899989964876----888999997348-----74555688988999999999-99996985899999999999
Q ss_pred HHHC
Q ss_conf 7403
Q gi|254780476|r 119 YIGE 122 (123)
Q Consensus 119 ~l~~ 122 (123)
.+.+
T Consensus 128 ~i~~ 131 (256)
T cd01146 128 RLAE 131 (256)
T ss_pred HHHH
T ss_conf 9999
No 500
>PRK00861 putative lipid kinase; Reviewed
Probab=22.86 E-value=65 Score=14.49 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCEEEEECC-------CHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH---CCCCEEEE
Q ss_conf 9877899539-------989999999999978-9899998897999999982---79989999
Q gi|254780476|r 1 MLKKVMIVED-------NELNMKLFRDLIETS-GYIALQTRNGMEALELARQ---HKPDVIIM 52 (123)
Q Consensus 1 m~kkiLiVDD-------~~~~~~~l~~~l~~~-g~~v~~a~~g~eal~~l~~---~~~dlill 52 (123)
|+||+++|=+ .....+.++..|+.. .+++.......+|-+++++ +.+|+|+.
T Consensus 1 M~kr~~~IvNP~aG~g~~~~~~~~i~~~l~~~~~~~v~~T~~~~~a~~la~~a~~~~~d~vv~ 63 (296)
T PRK00861 1 MTRSACLIFNPVAGQGNPEVDLALIRAILQPEMDLDIYLTTPEIGADALAQEAVERGAELIIA 63 (296)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 970799999867899864657999999997299689999578886999999998679989999
Done!