Query         gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs    128 out of 21461
Neff          7.9 
Searched_HMMs 39220
Date          Sun May 29 18:06:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780476.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR02154 PhoB phosphate regul 100.0 6.9E-39 1.8E-43  244.1  12.6  123    1-123     1-123 (226)
  2 PRK11107 hybrid sensory histid 100.0 4.8E-34 1.2E-38  216.3  16.6  120    3-122   669-788 (920)
  3 PRK09581 pleD response regulat 100.0 4.2E-33 1.1E-37  211.0  17.4  120    1-120     1-120 (457)
  4 PRK10841 hybrid sensory kinase 100.0 1.4E-32 3.5E-37  208.0  16.6  118    3-122   825-942 (947)
  5 PRK10161 transcriptional regul 100.0 6.1E-32 1.5E-36  204.3  16.5  122    1-122     1-122 (229)
  6 PRK11091 aerobic respiration c 100.0 1.7E-31 4.2E-36  201.8  16.3  120    2-122   525-645 (779)
  7 PRK09959 hybrid sensory histid 100.0 7.5E-31 1.9E-35  198.0  16.5  116    3-120   959-1074(1197)
  8 PRK10610 chemotaxis regulatory 100.0 1.3E-30 3.3E-35  196.6  17.4  120    3-122     6-126 (129)
  9 PRK10693 response regulator of 100.0 3.7E-30 9.4E-35  194.0  16.9  118    2-121     7-125 (337)
 10 PRK10923 glnG nitrogen regulat 100.0 1.1E-29 2.8E-34  191.3  15.7  119    1-121     1-120 (469)
 11 TIGR01387 cztR_silR_copR heavy 100.0 1.8E-31 4.7E-36  201.5   5.7  117    5-123     1-117 (219)
 12 CHL00148 orf27 Ycf27; Reviewed 100.0 6.9E-30 1.8E-34  192.5  13.7  119    1-122     5-123 (240)
 13 PRK11466 hybrid sensory histid 100.0 1.9E-29   5E-34  189.9  16.0  117    3-121   682-799 (912)
 14 PRK11083 DNA-binding response  100.0 5.9E-29 1.5E-33  187.1  16.6  119    2-122     3-121 (229)
 15 PRK09836 DNA-binding transcrip 100.0 3.8E-29 9.8E-34  188.2  15.6  117    4-122     2-118 (226)
 16 PRK10336 DNA-binding transcrip 100.0   3E-29 7.6E-34  188.8  14.9  117    4-122     2-118 (219)
 17 PRK10701 DNA-binding transcrip 100.0 1.3E-29 3.4E-34  190.8  13.1  118    2-122     1-118 (240)
 18 pfam00072 Response_reg Respons 100.0 4.3E-29 1.1E-33  187.9  15.2  111    5-117     1-111 (111)
 19 PRK11517 transcriptional regul 100.0 8.1E-29 2.1E-33  186.3  16.4  116    4-122     2-117 (223)
 20 PRK11361 acetoacetate metaboli 100.0 7.8E-29   2E-33  186.4  16.0  118    2-121     4-121 (457)
 21 PRK09468 ompR osmolarity respo 100.0   1E-28 2.6E-33  185.7  16.1  118    3-122     6-123 (239)
 22 PRK10955 DNA-binding transcrip 100.0 3.4E-29 8.7E-34  188.5  13.6  117    2-122     1-117 (232)
 23 PRK10529 DNA-binding transcrip 100.0   4E-29   1E-33  188.0  13.6  118    2-122     1-118 (225)
 24 PRK10766 DNA-binding transcrip 100.0 5.4E-29 1.4E-33  187.3  13.9  118    1-121     1-118 (224)
 25 cd00156 REC Signal receiver do 100.0 2.7E-28 6.8E-33  183.3  15.4  113    6-120     1-113 (113)
 26 PRK11173 two-component respons 100.0 4.1E-28 1.1E-32  182.2  16.2  118    1-121     1-119 (237)
 27 COG0745 OmpR Response regulato 100.0 5.6E-28 1.4E-32  181.5  15.5  119    3-123     1-119 (229)
 28 PRK10365 transcriptional regul 100.0 7.8E-28   2E-32  180.7  16.1  117    3-121     6-122 (441)
 29 PRK13557 histidine kinase; Pro 100.0 8.8E-28 2.2E-32  180.3  16.1  118    2-121   413-532 (538)
 30 PRK10046 dpiA two-component re 100.0 2.2E-27 5.6E-32  178.1  16.2  117    3-121     5-123 (225)
 31 PRK13856 two-component respons 100.0 2.5E-27 6.3E-32  177.8  16.2  117    2-121     1-118 (241)
 32 PRK10710 DNA-binding transcrip 100.0 1.3E-27 3.4E-32  179.3  14.3  118    2-122    10-127 (240)
 33 PRK10643 DNA-binding transcrip 100.0 3.6E-27 9.1E-32  176.9  16.5  117    4-122     2-118 (222)
 34 KOG0519 consensus              100.0 1.5E-27 3.9E-32  178.9  13.5  119    2-121   666-785 (786)
 35 PRK10816 DNA-binding transcrip 100.0 2.9E-27 7.4E-32  177.4  14.8  117    4-122     2-118 (223)
 36 PRK09390 fixJ response regulat  99.9 9.1E-27 2.3E-31  174.5  15.3  120    1-122     2-121 (202)
 37 PRK10430 DNA-binding transcrip  99.9 4.2E-26 1.1E-30  170.7  15.5  118    2-121     1-122 (239)
 38 TIGR02875 spore_0_A sporulatio  99.9 2.2E-26 5.5E-31  172.4  13.9  120    3-122     3-124 (270)
 39 COG2204 AtoC Response regulato  99.9 1.7E-25 4.4E-30  167.2  16.3  120    1-122     3-122 (464)
 40 COG4753 Response regulator con  99.9 1.6E-25 4.2E-30  167.3  14.0  119    2-122     1-122 (475)
 41 TIGR02956 TMAO_torS TMAO reduc  99.9 4.1E-26   1E-30  170.8  10.7  117    4-120   763-886 (1052)
 42 PRK13435 response regulator; P  99.9 3.8E-25 9.6E-30  165.2  15.4  113    3-121     2-116 (141)
 43 COG3437 Response regulator con  99.9   1E-24 2.6E-29  162.7  12.7  118    3-120    15-133 (360)
 44 PRK00742 chemotaxis-specific m  99.9   7E-24 1.8E-28  157.9  16.6  104    1-107     1-108 (345)
 45 TIGR01818 ntrC nitrogen regula  99.9 3.3E-24 8.5E-29  159.8  12.3  117    5-123     1-118 (471)
 46 COG3706 PleD Response regulato  99.9 1.9E-23 4.7E-28  155.5  15.6  121    2-122   132-252 (435)
 47 PRK12555 chemotaxis-specific m  99.9 1.6E-22 4.2E-27  150.1  14.8  102    3-107     2-107 (340)
 48 PRK09958 DNA-binding transcrip  99.9 8.1E-22 2.1E-26  146.1  15.3  116    4-121     2-118 (204)
 49 PRK09483 response regulator; P  99.9 1.7E-21 4.3E-26  144.3  16.0  118    2-121     1-120 (216)
 50 PRK10651 transcriptional regul  99.9 7.8E-22   2E-26  146.2  13.8  117    2-120     6-124 (216)
 51 PRK10403 transcriptional regul  99.9 1.6E-21 4.1E-26  144.4  14.6  118    2-121     6-125 (215)
 52 COG4565 CitB Response regulato  99.9 1.1E-20 2.7E-25  139.7  14.5  116    4-121     2-119 (224)
 53 COG4566 TtrR Response regulato  99.9 5.8E-21 1.5E-25  141.2  13.2  119    2-122     4-122 (202)
 54 PRK09935 transcriptional regul  99.9 2.2E-20 5.6E-25  137.8  15.6  118    2-121     3-122 (210)
 55 PRK10360 DNA-binding transcrip  99.9 3.1E-20   8E-25  137.0  15.8  115    2-121     1-117 (196)
 56 COG2197 CitB Response regulato  99.9 6.1E-20 1.5E-24  135.3  16.2  116    4-121     2-119 (211)
 57 COG0784 CheY FOG: CheY-like re  99.8   2E-19 5.2E-24  132.3  16.5  119    1-121     4-125 (130)
 58 PRK13837 two-component VirA-li  99.8   2E-19   5E-24  132.4  15.0  116    3-122   700-817 (831)
 59 PRK10840 transcriptional regul  99.8 3.7E-19 9.4E-24  130.8  16.0  117    3-121     4-125 (216)
 60 PRK11697 putative two-componen  99.8 3.6E-19 9.3E-24  130.9  15.7  115    2-121     1-117 (239)
 61 COG3947 Response regulator con  99.8 4.5E-19 1.1E-23  130.3  11.1  114    3-120     1-114 (361)
 62 PRK09191 two-component respons  99.8 8.9E-19 2.3E-23  128.6  12.2  115    1-120   136-252 (261)
 63 COG2201 CheB Chemotaxis respon  99.7 6.6E-17 1.7E-21  117.9  12.6  104    2-108     1-108 (350)
 64 TIGR02915 PEP_resp_reg putativ  99.7 3.8E-17 9.6E-22  119.3  11.3  114    5-121     1-119 (451)
 65 COG4567 Response regulator con  99.7   6E-16 1.5E-20  112.4  13.0  115    3-119    10-124 (182)
 66 PRK10100 DNA-binding transcrip  99.7   2E-15 5.1E-20  109.4  13.6  116    2-120    10-125 (216)
 67 PRK13558 bacterio-opsin activa  99.6 1.2E-15 3.1E-20  110.6   7.7  114    4-121    19-132 (674)
 68 COG3707 AmiR Response regulato  99.6 1.1E-14 2.7E-19  105.2  11.7  116    1-119     4-120 (194)
 69 PRK11475 DNA-binding transcrip  99.5 1.1E-12 2.7E-17   93.7  12.0  106   15-122     3-115 (205)
 70 COG3279 LytT Response regulato  99.4 4.5E-12 1.1E-16   90.1   9.3  115    2-120     1-117 (244)
 71 PRK09581 pleD response regulat  99.3 1.1E-10 2.9E-15   82.0  13.9  116    3-119   156-271 (457)
 72 PRK11107 hybrid sensory histid  99.3 1.1E-10 2.9E-15   82.1  12.6  112    2-117   536-647 (920)
 73 COG3706 PleD Response regulato  99.2 1.7E-11 4.3E-16   86.8   5.5   92   25-120    11-102 (435)
 74 smart00448 REC cheY-homologous  99.1 2.3E-10 5.8E-15   80.3   8.3   55    3-57      1-55  (55)
 75 pfam06490 FleQ Flagellar regul  98.6 1.3E-06 3.3E-11   58.7  11.7  107    4-119     1-107 (109)
 76 cd02067 B12-binding B12 bindin  97.2  0.0074 1.9E-07   37.2  10.7   94   12-107    13-111 (119)
 77 TIGR01815 TrpE-clade3 anthrani  97.0  0.0031   8E-08   39.3   7.1  100    2-107   524-624 (726)
 78 PRK13566 anthranilate synthase  97.0   0.003 7.7E-08   39.4   6.6   78    2-83    523-602 (724)
 79 pfam03709 OKR_DC_1_N Orn/Lys/A  96.6   0.028 7.2E-07   33.8   9.3   66   15-85      6-72  (111)
 80 cd02072 Glm_B12_BD B12 binding  96.4   0.087 2.2E-06   31.0  12.2  109    9-118    10-128 (128)
 81 COG4999 Uncharacterized domain  96.2   0.017 4.4E-07   35.1   6.4  110    2-117    11-122 (140)
 82 PRK02261 methylaspartate mutas  96.2    0.11 2.7E-06   30.5  13.5  117    3-122     4-136 (137)
 83 cd02070 corrinoid_protein_B12-  95.8    0.16 4.1E-06   29.5  10.7  100    4-106    84-192 (201)
 84 COG2185 Sbm Methylmalonyl-CoA   95.8    0.16 4.1E-06   29.5  11.8  112    8-121    22-138 (143)
 85 PRK09522 bifunctional anthrani  95.4   0.095 2.4E-06   30.8   7.3   77    2-83      1-84  (531)
 86 PRK05637 anthranilate synthase  95.3   0.039 9.9E-07   33.0   5.0   78    2-83      1-80  (208)
 87 cd02071 MM_CoA_mut_B12_BD meth  95.2    0.26 6.6E-06   28.3  13.7  107    9-117    10-121 (122)
 88 PRK07206 hypothetical protein;  94.5     0.4   1E-05   27.2  13.1  121    1-122     1-181 (415)
 89 pfam00563 EAL EAL domain. This  94.4    0.33 8.3E-06   27.7   7.9   94   11-106   130-233 (233)
 90 COG0512 PabA Anthranilate/para  94.4   0.094 2.4E-06   30.8   5.1   79    2-83      1-81  (191)
 91 PRK09426 methylmalonyl-CoA mut  94.1     0.5 1.3E-05   26.6  11.6  118    3-122   583-713 (715)
 92 PRK06895 para-aminobenzoate sy  92.9     0.7 1.8E-05   25.8   7.4   78    1-83      1-80  (191)
 93 PRK10551 hypothetical protein;  92.3    0.97 2.5E-05   25.0  10.3  108    8-118   394-512 (518)
 94 PRK00758 GMP synthase subunit   92.3    0.39 9.9E-06   27.3   5.5   73    4-83      1-74  (184)
 95 cd01948 EAL EAL domain. This d  91.5    0.82 2.1E-05   25.4   6.4   94   15-109   134-238 (240)
 96 smart00052 EAL Putative diguan  91.3    0.69 1.8E-05   25.9   5.8   95   15-110   135-240 (241)
 97 pfam05582 Peptidase_U57 YabG p  91.2     1.3 3.3E-05   24.3  11.0   98    1-100   104-222 (287)
 98 PRK09776 putative sensor prote  91.1     1.3 3.4E-05   24.2   9.7  108    7-116   993-1111(1116)
 99 pfam02310 B12-binding B12 bind  91.0     1.3 3.4E-05   24.2  10.4   92    9-103    11-109 (121)
100 cd02068 radical_SAM_B12_BD B12  90.9     1.4 3.6E-05   24.1  10.1  103   13-118     3-109 (127)
101 TIGR02855 spore_yabG sporulati  90.9     1.4 3.6E-05   24.1  10.0  102    1-106   112-235 (292)
102 PRK05928 hemD uroporphyrinogen  90.6     1.5 3.7E-05   24.0  11.1  115    3-122   127-252 (252)
103 COG2200 Rtn c-di-GMP phosphodi  90.2     1.6 4.1E-05   23.7  11.1  105   14-119   137-252 (256)
104 PRK10060 RNase II stability mo  90.0     1.7 4.2E-05   23.7  11.3  110    8-119   537-657 (663)
105 PRK07649 para-aminobenzoate/an  89.9    0.87 2.2E-05   25.3   5.3   74    5-83      2-79  (195)
106 PRK09590 celB cellobiose phosp  89.8     1.7 4.4E-05   23.6   8.9   97    2-118     1-102 (104)
107 PRK08007 para-aminobenzoate sy  89.3    0.88 2.2E-05   25.2   4.9   89    5-100     2-92  (187)
108 PRK11359 cAMP phosphodiesteras  89.1       2   5E-05   23.2  10.7  105   15-120   680-795 (799)
109 PRK10909 rsmD 16S rRNA m(2)G96  88.8     2.1 5.3E-05   23.1   9.2   82    2-84     75-158 (198)
110 PRK05670 anthranilate synthase  88.3       1 2.6E-05   24.9   4.7   77    4-83      1-79  (192)
111 COG4122 Predicted O-methyltran  88.1     1.8 4.5E-05   23.5   5.8   75    3-83     85-165 (219)
112 PRK13223 phosphoglycolate phos  87.0     2.2 5.7E-05   22.9   5.8  106    7-119    24-170 (272)
113 CHL00101 trpG anthranilate syn  87.0     1.7 4.3E-05   23.6   5.2   74    5-83      2-79  (190)
114 PRK01372 ddl D-alanine--D-alan  86.9     2.7 6.9E-05   22.5  10.1  117    1-120     3-166 (304)
115 PRK06774 para-aminobenzoate sy  86.9     1.5 3.8E-05   23.9   4.9   76    5-83      2-79  (191)
116 KOG1562 consensus               86.7     2.8   7E-05   22.4   7.0   64    4-67    147-216 (337)
117 COG1568 Predicted methyltransf  86.3     0.8   2E-05   25.5   3.2   89    1-90    174-266 (354)
118 TIGR00078 nadC nicotinate-nucl  86.2     2.9 7.5E-05   22.2   9.3   80   15-101   173-257 (276)
119 cd06358 PBP1_NHase Type I peri  85.6     3.1   8E-05   22.1  12.7   88    2-93    132-230 (333)
120 PRK08857 para-aminobenzoate sy  85.6     1.7 4.2E-05   23.7   4.6   87    5-100     2-92  (192)
121 PRK11596 EAL domain-containing  85.0     3.4 8.7E-05   21.9   9.1   94   22-116   149-252 (255)
122 PRK13229 consensus              84.9     2.2 5.5E-05   23.0   4.9  114    1-119     5-163 (234)
123 cd06268 PBP1_ABC_transporter_L  84.6     3.5   9E-05   21.8  12.3  102    2-107   135-247 (298)
124 PRK01130 N-acetylmannosamine-6  84.6     3.5   9E-05   21.8  13.7  105   11-120   104-220 (222)
125 cd01743 GATase1_Anthranilate_S  84.4     1.8 4.6E-05   23.4   4.3   74    5-83      1-78  (184)
126 pfam10087 DUF2325 Uncharacteri  84.2     3.7 9.4E-05   21.7   8.0   88    4-94      1-91  (96)
127 cd02069 methionine_synthase_B1  82.7     4.3 0.00011   21.3   9.7   95    9-106    99-202 (213)
128 PRK10624 L-1,2-propanediol oxi  82.5     4.3 0.00011   21.3   9.4   86    2-90     29-144 (381)
129 PRK10558 alpha-dehydro-beta-de  82.4     4.4 0.00011   21.2  10.4  106   11-117     3-111 (256)
130 PRK10310 galactitol-specific P  82.0     4.5 0.00011   21.2   7.4   80    1-96      1-90  (94)
131 pfam01596 Methyltransf_3 O-met  81.7     4.6 0.00012   21.1   7.5   79    3-85     70-155 (204)
132 pfam01861 DUF43 Protein of unk  81.6       3 7.8E-05   22.1   4.6   85    1-86     66-153 (243)
133 PRK00994 F420-dependent methyl  81.4     4.7 0.00012   21.0   9.1   81   23-106    28-116 (276)
134 PRK13138 consensus              81.2     4.8 0.00012   21.0   6.3   45   62-108    78-128 (264)
135 PRK05752 uroporphyrinogen-III   80.8       5 0.00013   20.9  12.9  113    2-123   130-254 (255)
136 pfam00117 GATase Glutamine ami  80.8     4.9 0.00013   20.9   5.4   74    6-83      1-78  (187)
137 pfam00478 IMPDH IMP dehydrogen  80.7       5 0.00013   20.9   6.0   60   40-102   229-289 (467)
138 PRK13226 phosphoglycolate phos  79.5       4  0.0001   21.5   4.6  107    7-119    15-156 (221)
139 PRK09423 gldA glycerol dehydro  79.5     5.5 0.00014   20.7   7.2   78    2-85     29-117 (366)
140 cd01522 RHOD_1 Member of the R  79.4     5.6 0.00014   20.6   5.8   66   34-101     2-91  (117)
141 PRK09482 xni exonuclease IX; P  79.4     5.6 0.00014   20.6   6.6  113    1-118     1-117 (256)
142 PRK03958 tRNA 2'-O-methylase;   78.5     5.9 0.00015   20.5   9.0  100    2-107    31-133 (175)
143 pfam04131 NanE Putative N-acet  78.4       6 0.00015   20.5   9.9   85   17-106    83-174 (192)
144 pfam00977 His_biosynth Histidi  78.4       6 0.00015   20.5   6.4   65   37-104   151-219 (229)
145 PRK13118 consensus              78.4       6 0.00015   20.5   7.3   48   62-111    82-135 (269)
146 PRK02645 ppnK inorganic polyph  78.3       6 0.00015   20.5   9.6   90    2-109     3-102 (304)
147 cd04730 NPD_like 2-Nitropropan  78.1     6.1 0.00016   20.4  10.8   83   18-104    94-184 (236)
148 PRK13337 putative lipid kinase  77.9     6.2 0.00016   20.4   7.7   77    1-83      1-91  (305)
149 pfam03602 Cons_hypoth95 Conser  77.5     6.4 0.00016   20.3   9.1   82    2-83     66-150 (181)
150 COG1454 EutG Alcohol dehydroge  76.7     6.7 0.00017   20.2  10.3   86    3-91     30-143 (377)
151 PRK05718 keto-hydroxyglutarate  75.9       7 0.00018   20.1  11.5   98   14-115     4-103 (212)
152 cd06342 PBP1_ABC_LIVBP_like Ty  75.8     7.1 0.00018   20.0  13.7  116    2-121   135-268 (334)
153 cd01121 Sms Sms (bacterial rad  75.7     7.1 0.00018   20.0   6.9   81    3-83    111-207 (372)
154 PRK07765 para-aminobenzoate sy  75.5     7.2 0.00018   20.0   5.8   75    4-83      2-83  (221)
155 COG0157 NadC Nicotinate-nucleo  75.3     7.3 0.00019   20.0  10.9   92    5-102   161-259 (280)
156 PRK00120 putative deoxyribonuc  75.3     4.4 0.00011   21.2   3.9   32    1-32      1-32  (197)
157 PRK10826 2-deoxyglucose-6-phos  75.1     7.4 0.00019   19.9   6.4  108    7-119    18-161 (222)
158 PRK05993 short chain dehydroge  74.9     7.5 0.00019   19.9   7.5   56    1-56      3-58  (277)
159 PRK08385 nicotinate-nucleotide  74.7     7.6 0.00019   19.9   7.8   72   28-102   186-257 (279)
160 PRK04128 1-(5-phosphoribosyl)-  74.2     7.8  0.0002   19.8   8.1   73   26-103   136-209 (228)
161 TIGR02253 CTE7 HAD superfamily  73.7       8  0.0002   19.7   6.0   55   60-119   117-182 (244)
162 cd04729 NanE N-acetylmannosami  73.7       8  0.0002   19.7  10.7   90   12-105   109-206 (219)
163 PRK08017 short chain dehydroge  73.4     8.2 0.00021   19.7   7.6   57    1-57      1-57  (256)
164 PRK00811 spermidine synthase;   72.9     8.4 0.00021   19.6   5.9   77    3-82    103-191 (283)
165 TIGR00708 cobA cob(I)alamin ad  72.9       8  0.0002   19.7   4.7   56   38-96    106-166 (191)
166 PRK13585 1-(5-phosphoribosyl)-  72.3     8.7 0.00022   19.5   7.3   80   35-117   150-239 (240)
167 PRK06552 keto-hydroxyglutarate  71.8     8.9 0.00023   19.5  11.4   99   16-117     4-106 (209)
168 PRK07053 glutamine amidotransf  71.5     4.5 0.00011   21.2   3.1   81    1-83      1-90  (235)
169 cd04509 PBP1_ABC_transporter_G  71.1     9.3 0.00024   19.4  12.3  104    2-107   136-250 (299)
170 PRK11823 DNA repair protein Ra  70.5     9.6 0.00024   19.3   9.1   81    3-83    118-214 (454)
171 cd04728 ThiG Thiazole synthase  70.2     9.7 0.00025   19.3   8.7  102   14-120   109-224 (248)
172 COG0742 N6-adenine-specific me  70.2     9.7 0.00025   19.2   9.5   82    2-83     66-153 (187)
173 pfam03796 DnaB_C DnaB-like hel  69.8     6.4 0.00016   20.3   3.6   42   43-84    126-179 (186)
174 pfam00448 SRP54 SRP54-type pro  69.7      10 0.00025   19.2   9.8  101    2-105    29-149 (196)
175 PRK10966 exonuclease subunit S  69.7     9.9 0.00025   19.2   4.6   53   39-92     32-90  (402)
176 PRK10128 putative aldolase; Pr  69.3      10 0.00026   19.1  10.3   82   35-117    11-93  (250)
177 cd06360 PBP1_alkylbenzenes_lik  69.0      10 0.00026   19.1  14.9  118    2-121   134-269 (336)
178 cd06335 PBP1_ABC_ligand_bindin  68.7      10 0.00027   19.1  12.6   92    3-98    139-241 (347)
179 PRK10669 putative cation:proto  68.7      10 0.00027   19.1   9.4   95    3-106   441-536 (558)
180 cd02065 B12-binding_like B12 b  68.5      11 0.00027   19.0   7.7   69   12-81     13-85  (125)
181 PRK08904 consensus              68.5      11 0.00027   19.0  11.4   93   19-115     4-98  (207)
182 CHL00162 thiG thiamin biosynth  68.4      11 0.00027   19.0   9.4  103   13-120   122-238 (267)
183 cd03115 SRP The signal recogni  68.2      11 0.00027   19.0   9.8  103    3-105    29-148 (173)
184 COG0421 SpeE Spermidine syntha  68.1      11 0.00027   19.0   7.2   78    2-82    100-188 (282)
185 TIGR00336 pyrE orotate phospho  67.8     8.2 0.00021   19.7   3.8   62    3-84    118-183 (187)
186 TIGR03239 GarL 2-dehydro-3-deo  67.6      11 0.00028   18.9  10.1   84   33-117    20-104 (249)
187 PRK08782 consensus              67.0      11 0.00029   18.8  11.6   99   15-117     7-107 (219)
188 TIGR00089 TIGR00089 RNA modifi  66.7      12 0.00029   18.8   9.0  100   11-121    12-118 (455)
189 COG0621 MiaB 2-methylthioadeni  66.5      12  0.0003   18.8   8.1  111    1-121     1-116 (437)
190 KOG1601 consensus               66.4       1 2.5E-05   24.9  -1.1  104    6-109    19-126 (340)
191 KOG4175 consensus               66.1      12  0.0003   18.8   6.3   83   36-119    35-143 (268)
192 PRK05595 replicative DNA helic  66.1     9.1 0.00023   19.4   3.8   66   20-85    279-360 (444)
193 PRK13055 putative lipid kinase  65.8      12 0.00031   18.7   7.6   87    1-94      1-102 (334)
194 cd02990 UAS_FAF1 UAS family, F  64.6      13 0.00032   18.6   6.0   87   13-121    48-134 (136)
195 cd04732 HisA HisA.  Phosphorib  64.1      13 0.00033   18.5   8.0   68   34-104   147-218 (234)
196 pfam01993 MTD methylene-5,6,7,  64.1      13 0.00033   18.5   9.7   81   23-106    27-116 (276)
197 COG2022 ThiG Uncharacterized e  64.0      13 0.00033   18.5   8.3   82   19-105   123-211 (262)
198 PRK07413 hypothetical protein;  63.7      13 0.00034   18.5   4.3   45   44-91    123-172 (382)
199 TIGR00619 sbcd nuclease SbcCD,  63.5      13 0.00034   18.5   4.7   56   38-93     40-102 (275)
200 PRK09860 putative alcohol dehy  63.4      13 0.00034   18.5  11.1   88    2-92     31-146 (383)
201 PRK05636 replicative DNA helic  63.3      11 0.00027   19.0   3.7   68   19-86    344-427 (507)
202 PRK07455 keto-hydroxyglutarate  63.3      13 0.00034   18.4  11.5   92   18-115     6-101 (210)
203 COG0352 ThiE Thiamine monophos  63.2      13 0.00034   18.4   8.9   78   20-102    99-183 (211)
204 TIGR02982 heterocyst_DevA ABC   63.2      12 0.00031   18.7   4.0   69   17-85    121-201 (220)
205 PRK05848 nicotinate-nucleotide  62.9      14 0.00035   18.4  10.5   94    4-102   153-253 (272)
206 pfam09936 DUF2168 Uncharacteri  62.5      14 0.00035   18.4   9.5   98    3-108    43-161 (185)
207 PRK06857 consensus              62.5      14 0.00035   18.3  11.3   92   20-115     7-100 (209)
208 PRK00208 thiG thiazole synthas  62.3      14 0.00036   18.3   9.6  102   14-120   110-225 (256)
209 PRK09140 2-dehydro-3-deoxy-6-p  61.9      14 0.00036   18.3  11.5   91   20-115     5-99  (206)
210 PRK11587 putative phosphatase;  61.3     7.3 0.00019   20.0   2.6  107    7-119    14-151 (218)
211 cd06329 PBP1_SBP_like_3 Peripl  61.2      15 0.00037   18.2  10.3   90    2-96    143-246 (342)
212 COG0637 Predicted phosphatase/  60.9      15 0.00038   18.2   7.1  109    6-119    12-155 (221)
213 pfam07688 KaiA KaiA domain. Th  60.8      15 0.00038   18.2   8.7   74    7-85      5-80  (283)
214 COG1537 PelA Predicted RNA-bin  60.5      15 0.00039   18.1   4.1   54   49-107   292-351 (352)
215 pfam01564 Spermine_synth Sperm  60.4      15 0.00039   18.1   6.3   78    2-82     99-187 (240)
216 COG1927 Mtd Coenzyme F420-depe  60.3      15 0.00039   18.1   9.8   82   22-106    27-117 (277)
217 PRK00312 pcm protein-L-isoaspa  60.3     7.9  0.0002   19.8   2.6   69    1-72     99-169 (213)
218 cd02809 alpha_hydroxyacid_oxid  59.9      15 0.00039   18.1   8.9   74   27-104   120-199 (299)
219 PRK13805 bifunctional acetalde  59.8      16  0.0004   18.1  10.3   64    2-68    482-558 (862)
220 pfam01081 Aldolase KDPG and KH  59.7      16  0.0004   18.1  10.9   87   20-112     3-93  (196)
221 pfam01976 DUF116 Protein of un  59.6      16  0.0004   18.1   5.1   62   16-83     76-137 (158)
222 PRK12723 flagellar biosynthesi  59.5      16  0.0004   18.0  10.6  100    5-105   209-321 (388)
223 pfam05690 ThiG Thiazole biosyn  58.9      16 0.00041   18.0  10.5  102   14-120   108-223 (246)
224 PRK06015 keto-hydroxyglutarate  58.8      16 0.00041   18.0  11.7   99   15-117     5-105 (212)
225 PRK11574 hypothetical protein;  58.6      11 0.00029   18.8   3.2   84    1-85      1-108 (196)
226 PRK13140 consensus              58.5      16 0.00042   17.9   7.5   47   62-111    79-131 (257)
227 PRK13175 consensus              58.4      16 0.00042   17.9   4.6   71    2-83      1-81  (206)
228 PHA02518 ParA-like protein; Pr  58.3      16 0.00042   17.9   5.1   64    2-69     29-97  (211)
229 TIGR01405 polC_Gram_pos DNA po  57.7      16  0.0004   18.0   3.8   66    8-75    266-332 (1264)
230 PRK03612 spermidine synthase;   57.7      17 0.00043   17.9   8.1   77    3-82    318-409 (516)
231 cd04723 HisA_HisF Phosphoribos  57.6      17 0.00043   17.9   8.7   68   34-104   147-217 (233)
232 PRK09165 replicative DNA helic  57.1      16 0.00042   17.9   3.8   68   19-86    296-381 (484)
233 TIGR01134 purF amidophosphorib  56.9      17 0.00045   17.8   4.0   33    3-35    361-398 (467)
234 PRK13587 1-(5-phosphoribosyl)-  56.9      17 0.00045   17.8   9.0   72   33-107   148-224 (234)
235 pfam06073 DUF934 Bacterial pro  56.4      18 0.00045   17.7   8.5   74   43-118    14-91  (110)
236 PRK11829 biofilm formation reg  56.4      18 0.00045   17.7  10.5  105    8-116   603-720 (728)
237 PRK12724 flagellar biosynthesi  56.3      18 0.00045   17.7  10.3  103    2-105   252-368 (432)
238 pfam00465 Fe-ADH Iron-containi  55.5      18 0.00047   17.6  10.1   83    2-87     22-132 (312)
239 PRK10901 16S rRNA methyltransf  55.1      19 0.00048   17.6   5.0   54    3-56    270-324 (428)
240 PRK11572 copper homeostasis pr  55.1      19 0.00048   17.6   9.3   93    7-102    95-195 (248)
241 PRK07024 short chain dehydroge  55.1      19 0.00048   17.6   9.0   80    1-82      1-83  (256)
242 PRK07315 fructose-bisphosphate  54.7      19 0.00048   17.6   6.7   40   61-102   189-229 (293)
243 PRK13180 consensus              54.7      19 0.00049   17.6   5.1   45    2-52      1-45  (209)
244 PRK13143 hisH imidazole glycer  54.3      19 0.00049   17.5   5.0   71    2-83      1-79  (201)
245 cd01742 GATase1_GMP_Synthase T  54.0      20  0.0005   17.5   7.3   73    5-83      1-77  (181)
246 cd06334 PBP1_ABC_ligand_bindin  53.8      20  0.0005   17.5  11.7   96    3-103   141-247 (351)
247 PRK13561 putative phosphodiest  53.1      20 0.00051   17.4  10.6  102   11-115   532-646 (651)
248 PRK11840 bifunctional sulfur c  53.1      20 0.00051   17.4   9.0   97   19-120   191-299 (327)
249 pfam02475 Met_10 Met-10+ like-  52.8      20 0.00052   17.4   3.8   24    4-27    126-149 (199)
250 pfam00456 Transketolase_N Tran  51.8      21 0.00054   17.3   5.6   54    3-56    175-245 (333)
251 COG3684 LacD Tagatose-1,6-bisp  51.6      21 0.00055   17.3   5.2   59   46-104   197-262 (306)
252 cd00984 DnaB_C DnaB helicase C  51.4      22 0.00055   17.3   4.1   44   43-86    120-173 (242)
253 PRK12857 putative aldolase; Re  50.5      22 0.00057   17.2   8.8   66   33-102   155-229 (284)
254 cd02803 OYE_like_FMN_family Ol  50.5      22 0.00057   17.2   7.2   42   58-102   266-307 (327)
255 pfam02254 TrkA_N TrkA-N domain  50.4      22 0.00057   17.2  10.2   91    4-103    22-113 (115)
256 TIGR01244 TIGR01244 conserved   50.3      22 0.00057   17.2   3.7   33   91-123    50-86  (136)
257 PRK03220 consensus              50.2      22 0.00057   17.2  10.2   80   36-118   162-251 (257)
258 PRK08760 replicative DNA helic  50.2      23 0.00057   17.1   5.8   67   19-85    306-388 (476)
259 cd02012 TPP_TK Thiamine pyroph  50.1      23 0.00058   17.1   4.1   70   49-119   132-212 (255)
260 PRK13222 phosphoglycolate phos  49.8      23 0.00058   17.1   5.4   52   62-118    99-161 (228)
261 TIGR03600 phage_DnaB phage rep  49.8      21 0.00054   17.3   3.4   68   19-86    271-354 (421)
262 PRK06096 molybdenum transport   49.6      23 0.00059   17.1  12.8   94    4-102   159-261 (284)
263 PRK13942 protein-L-isoaspartat  49.5      19 0.00049   17.5   3.1   68    2-72    101-170 (214)
264 TIGR01334 modD modD protein; I  49.5      23 0.00059   17.1   9.7   92    8-104   169-262 (277)
265 COG0167 PyrD Dihydroorotate de  49.2      23  0.0006   17.1   6.7   57   63-120   229-292 (310)
266 TIGR01163 rpe ribulose-phospha  49.1      23  0.0006   17.0   7.3   95   10-104    90-196 (216)
267 TIGR02463 MPGP_rel mannosyl-3-  48.8      17 0.00045   17.8   2.8   36   62-101    22-57  (224)
268 COG0134 TrpC Indole-3-glycerol  48.7      24 0.00061   17.0   8.7   88   14-105   144-236 (254)
269 PRK08082 consensus              48.6      24 0.00061   17.0   4.4   67   20-86    281-364 (453)
270 PRK11059 regulatory protein Cs  48.4      24 0.00061   17.0  10.3   98   10-108   532-640 (642)
271 PRK11144 modC molybdate transp  48.3      24 0.00062   17.0   4.3   71   15-85    106-188 (352)
272 PRK13117 consensus              47.7      25 0.00063   16.9  11.7   94    6-103   127-232 (268)
273 cd06348 PBP1_ABC_ligand_bindin  47.6      25 0.00063   16.9  14.5  115    3-121   137-270 (344)
274 cd01573 modD_like ModD; Quinol  47.3      25 0.00064   16.9   9.8   71   28-103   186-256 (272)
275 PRK12858 tagatose 1,6-diphosph  47.3      25 0.00064   16.9   6.4   60   45-104   198-277 (340)
276 COG0420 SbcD DNA repair exonuc  47.3      25 0.00064   16.9   4.3   57   35-92     29-91  (390)
277 pfam05175 MTS Methyltransferas  47.2      25 0.00064   16.9   3.9   61    3-66     56-120 (170)
278 PRK13224 consensus              46.9      25 0.00065   16.8   5.5  106    7-118    12-154 (216)
279 cd00133 PTS_IIB PTS_IIB: subun  46.8      26 0.00065   16.8   8.9   76    4-96      1-82  (84)
280 PRK08694 consensus              46.7      26 0.00065   16.8   3.6   68   19-86    295-380 (468)
281 PRK06953 short chain dehydroge  46.7      26 0.00065   16.8   7.2   77    2-84      1-78  (222)
282 TIGR00631 uvrb excinuclease AB  46.7      26 0.00065   16.8   5.6  106    4-109   449-592 (667)
283 TIGR03407 urea_ABC_UrtA urea A  46.6      26 0.00066   16.8   9.7   79    2-82    134-224 (359)
284 COG0518 GuaA GMP synthase - Gl  46.5      25 0.00063   16.9   3.3   81    2-83      1-86  (198)
285 cd01144 BtuF Cobalamin binding  46.3      26 0.00066   16.8   5.7   73   39-120    50-122 (245)
286 TIGR03499 FlhF flagellar biosy  46.1      26 0.00067   16.8   6.1   20   97-118   250-269 (282)
287 cd03823 GT1_ExpE7_like This fa  46.1      26 0.00067   16.8  10.2   53   61-122   277-329 (359)
288 cd06330 PBP1_Arsenic_SBP_like   46.0      26 0.00067   16.8   9.5   79    3-83    139-230 (346)
289 TIGR01497 kdpB K+-transporting  45.8      27 0.00068   16.7   5.5   80   35-119   414-504 (675)
290 pfam03808 Glyco_tran_WecB Glyc  45.6      27 0.00068   16.7   7.2   66    3-70     49-123 (172)
291 COG4148 ModC ABC-type molybdat  45.6      27 0.00068   16.7   4.2   69   20-88    120-191 (352)
292 cd06273 PBP1_GntR_like_1 This   45.2      27 0.00069   16.7   9.3   65   11-82     11-84  (268)
293 COG3836 HpcH 2,4-dihydroxyhept  45.1      27 0.00069   16.7   8.7   95   18-113     8-105 (255)
294 PTZ00089 transketolase; Provis  45.1      27 0.00069   16.7   4.9   72    3-74    179-281 (670)
295 cd01129 PulE-GspE PulE/GspE Th  45.0      27 0.00069   16.7   6.5   88    2-102   108-201 (264)
296 cd06285 PBP1_LacI_like_7 Ligan  45.0      27  0.0007   16.7   9.2   61   15-82     18-84  (265)
297 cd03819 GT1_WavL_like This fam  44.7      28  0.0007   16.6   3.8   43   75-121   287-329 (355)
298 cd01423 MGS_CPS_I_III Methylgl  44.6      23 0.00059   17.1   2.9   91    3-100     1-103 (116)
299 COG4594 FecB ABC-type Fe3+-cit  44.6      22 0.00057   17.2   2.8   70    5-85     71-141 (310)
300 cd00516 PRTase_typeII Phosphor  44.4      28 0.00071   16.6   7.8   71   31-102   190-264 (281)
301 COG0036 Rpe Pentose-5-phosphat  44.3      28 0.00071   16.6   8.0  103   19-121   102-218 (220)
302 cd06336 PBP1_ABC_ligand_bindin  44.2      28 0.00072   16.6  11.6   97    3-102   139-246 (347)
303 PRK08506 replicative DNA helic  44.0      28 0.00072   16.6   4.8   67   19-85    269-352 (473)
304 PRK08104 consensus              43.9      28 0.00072   16.6  11.0   84   20-107    10-95  (212)
305 TIGR01556 rhamnosyltran rhamno  43.8      28 0.00073   16.6   5.3   65    3-68     25-103 (291)
306 cd00331 IGPS Indole-3-glycerol  43.8      28 0.00073   16.6   9.0   87   14-104   109-200 (217)
307 pfam01729 QRPTase_C Quinolinat  43.6      29 0.00073   16.5   9.6   69   29-102    84-152 (169)
308 cd01122 GP4d_helicase GP4d_hel  43.6      29 0.00073   16.5   4.0   45   41-85    135-190 (271)
309 cd06355 PBP1_FmdD_like Peripla  43.4      29 0.00074   16.5  11.5   79    2-82    133-223 (348)
310 COG2805 PilT Tfp pilus assembl  43.3      29 0.00074   16.5   3.2   60    2-65    154-216 (353)
311 TIGR00515 accD acetyl-CoA carb  43.2      29 0.00074   16.5   3.7   52   43-95    125-181 (292)
312 pfam01135 PCMT Protein-L-isoas  43.0      29 0.00075   16.5   3.6   66    4-72    100-167 (205)
313 PRK04195 replication factor C   43.0      29 0.00075   16.5   8.5   95   21-121    60-175 (403)
314 cd06331 PBP1_AmiC_like Type I   42.8      30 0.00075   16.5  12.9   87    2-91    132-229 (333)
315 cd06327 PBP1_SBP_like_1 Peripl  42.8      30 0.00075   16.5  12.3  115    3-121   136-269 (334)
316 PRK13523 NADPH dehydrogenase N  42.7      30 0.00076   16.5   6.0   56   44-102   238-301 (337)
317 PRK03659 glutathione-regulated  42.5      30 0.00076   16.4  10.0   96    3-107   424-520 (602)
318 PRK09922 UDP-D-galactose:(gluc  42.1      30 0.00077   16.4   9.3   54   61-122   273-326 (361)
319 COG2109 BtuR ATP:corrinoid ade  41.8      31 0.00078   16.4   5.9   56   38-96    114-174 (198)
320 PRK00748 1-(5-phosphoribosyl)-  41.6      31 0.00079   16.4   8.1   81   35-118   147-240 (241)
321 PRK13597 imidazole glycerol ph  41.5      31 0.00079   16.4   9.3   68   47-117   167-243 (252)
322 PRK12399 tagatose 1,6-diphosph  41.5      31 0.00079   16.3   7.1   64   41-104   191-274 (324)
323 TIGR01285 nifN nitrogenase mol  41.2      31  0.0008   16.3   4.9   66   32-97     76-148 (451)
324 COG1303 Uncharacterized protei  40.9      32 0.00081   16.3  10.7  112    2-120    32-147 (179)
325 COG2179 Predicted hydrolase of  40.9      32 0.00081   16.3   7.0  111    6-119    39-153 (175)
326 TIGR01182 eda 2-dehydro-3-deox  40.6      32 0.00082   16.3   4.6   94    6-106    14-130 (205)
327 PRK06202 hypothetical protein;  40.6      32 0.00082   16.3   5.2   75    4-81     91-165 (233)
328 cd06299 PBP1_LacI_like_13 Liga  40.5      32 0.00082   16.3   9.1   65   11-82     11-84  (265)
329 TIGR02317 prpB methylisocitrat  40.4      15 0.00037   18.2   1.4   85   16-101     3-105 (287)
330 COG0118 HisH Glutamine amidotr  40.3      32 0.00083   16.2   5.0   70    2-82      1-80  (204)
331 cd03421 SirA_like_N SirA_like_  40.2      33 0.00083   16.2   3.7   32    4-35     27-58  (67)
332 CHL00200 trpA tryptophan synth  39.9      33 0.00084   16.2  10.3   47   62-111    80-132 (263)
333 cd03298 ABC_ThiQ_thiamine_tran  39.8      33 0.00084   16.2   5.6   75   11-85    102-188 (211)
334 PRK13127 consensus              39.7      33 0.00084   16.2  14.7  112    5-120   119-251 (262)
335 PRK00683 murD UDP-N-acetylmura  39.5      33 0.00085   16.2   9.1   99    2-104     3-134 (418)
336 cd01149 HutB Hemin binding pro  39.3      34 0.00086   16.2   6.6   73   39-120    51-124 (235)
337 PRK10436 hypothetical protein;  39.1      34 0.00086   16.1   4.4   19   35-53    273-291 (461)
338 cd01140 FatB Siderophore bindi  39.1      34 0.00086   16.1   3.3   16   39-54     65-80  (270)
339 PRK13137 consensus              39.0      34 0.00087   16.1   7.5   47   62-111    89-141 (266)
340 cd01148 TroA_a Metal binding p  39.0      34 0.00087   16.1   4.7   42   39-84     72-114 (284)
341 cd01542 PBP1_TreR_like Ligand-  38.8      34 0.00087   16.1   9.1   37   16-52     19-61  (259)
342 PRK12738 kbaY tagatose-bisphos  38.7      34 0.00088   16.1   8.4   66   33-102   155-229 (286)
343 COG1222 RPT1 ATP-dependent 26S  38.6      34 0.00088   16.1   6.1   72   36-107   234-321 (406)
344 cd01844 SGNH_hydrolase_like_6   38.5      35 0.00088   16.1   6.0   60   24-85     29-102 (177)
345 KOG0781 consensus               38.5      35 0.00088   16.1   5.2   62   24-85    444-505 (587)
346 cd06282 PBP1_GntR_like_2 Ligan  38.4      35 0.00089   16.1   9.5   67   10-82     10-85  (266)
347 TIGR02102 pullulan_Gpos pullul  38.1      16  0.0004   18.1   1.2   47    1-52    637-688 (1164)
348 PRK13288 pyrophosphatase PpaX;  38.1      35  0.0009   16.0   6.2   33   63-99     89-121 (214)
349 cd03804 GT1_wbaZ_like This fam  38.0      35  0.0009   16.0   3.5   53   61-122   274-326 (351)
350 PRK03562 glutathione-regulated  37.8      36 0.00091   16.0  10.2   95    4-107   424-519 (615)
351 COG1856 Uncharacterized homolo  37.7      34 0.00088   16.1   2.9  100    7-108   118-254 (275)
352 COG1066 Sms Predicted ATP-depe  37.6      36 0.00091   16.0   7.6   80    3-82    121-216 (456)
353 PRK07589 ornithine cyclodeamin  37.6      36 0.00091   16.0   5.8   38    3-40    155-192 (346)
354 PRK08591 acetyl-CoA carboxylas  37.5      36 0.00092   16.0   5.1   38    1-39      1-38  (449)
355 cd03805 GT1_ALG2_like This fam  37.4      36 0.00092   16.0   4.0   42   75-121   322-363 (392)
356 PRK05703 flhF flagellar biosyn  37.3      36 0.00092   16.0  11.1  102    4-107   242-355 (412)
357 cd01147 HemV-2 Metal binding p  37.0      37 0.00093   15.9   4.7   74   39-120    67-141 (262)
358 cd06326 PBP1_STKc_like Type I   36.9      37 0.00094   15.9  11.8   88    3-94    137-235 (336)
359 COG1091 RfbD dTDP-4-dehydrorha  36.8      37 0.00094   15.9   6.3   57    5-62      3-66  (281)
360 PRK07896 nicotinate-nucleotide  36.8      37 0.00094   15.9  11.5   94    4-102   171-270 (288)
361 TIGR01090 apt adenine phosphor  36.7      37 0.00094   15.9   3.6   33    2-34    114-149 (175)
362 cd01541 PBP1_AraR Ligand-bindi  36.7      37 0.00094   15.9   9.2   69   11-84     11-91  (273)
363 cd06296 PBP1_CatR_like Ligand-  36.5      37 0.00095   15.9   7.9   67   10-83     10-85  (270)
364 PRK06101 short chain dehydroge  36.5      37 0.00095   15.9   7.5   57    2-58      1-57  (241)
365 cd03795 GT1_like_4 This family  36.4      37 0.00095   15.9   3.5   54   61-122   279-332 (357)
366 PRK13173 consensus              36.4      37 0.00095   15.9   5.0   51    2-62      1-51  (211)
367 cd00561 CobA_CobO_BtuR ATP:cor  36.3      38 0.00096   15.9   5.0   52   40-94     89-145 (159)
368 COG1436 NtpG Archaeal/vacuolar  36.3      38 0.00096   15.9   7.6   76    1-85      1-81  (104)
369 PRK06904 replicative DNA helic  36.0      38 0.00097   15.8   3.9   43   43-85    330-383 (472)
370 pfam06925 MGDG_synth Monogalac  35.9      38 0.00097   15.8   5.7   61   39-105    82-144 (169)
371 PRK07579 hypothetical protein;  35.9      38 0.00097   15.8   3.0   27    2-28      1-27  (245)
372 cd06347 PBP1_ABC_ligand_bindin  35.7      38 0.00098   15.8  11.3  116    2-121   135-269 (334)
373 TIGR03669 urea_ABC_arch urea A  35.6      39 0.00098   15.8  10.0   79    3-85    134-223 (374)
374 cd06338 PBP1_ABC_ligand_bindin  35.4      39 0.00099   15.8  12.1   80    3-86    142-232 (345)
375 LOAD_USPA consensus             34.8      40   0.001   15.7   5.9   18    3-20      1-19  (135)
376 COG4081 Uncharacterized protei  34.7      40   0.001   15.7   9.5  120    1-123     1-147 (148)
377 PRK06321 replicative DNA helic  34.5      40   0.001   15.7   3.9   66   20-85    304-388 (472)
378 cd01568 QPRTase_NadC Quinolina  34.5      40   0.001   15.7  11.2   94    4-103   153-253 (269)
379 pfam03698 UPF0180 Uncharacteri  34.3      38 0.00098   15.8   2.7   60   15-88     10-69  (80)
380 COG5012 Predicted cobalamin bi  34.2      41   0.001   15.7   7.2   86   15-104   121-212 (227)
381 TIGR02472 sucr_P_syn_N sucrose  33.8      41  0.0011   15.6   3.8  102   11-123   302-413 (445)
382 pfam07537 CamS CamS sex pherom  33.8      37 0.00096   15.9   2.6   21   62-82    150-170 (318)
383 PRK07004 replicative DNA helic  33.7      42  0.0011   15.6   3.6   68   19-86    290-374 (460)
384 PRK07414 cob(I)yrinic acid a,c  33.6      42  0.0011   15.6   5.8   54   38-94    107-165 (178)
385 PRK05986 cob(I)yrinic acid a,c  33.6      42  0.0011   15.6   5.0   52   40-94    108-164 (190)
386 cd04722 TIM_phosphate_binding   33.3      42  0.0011   15.6  10.1   97    5-104    88-198 (200)
387 PRK13168 rumA 23S rRNA 5-methy  33.3      42  0.0011   15.6   9.3  100    2-107   316-422 (440)
388 cd03825 GT1_wcfI_like This fam  33.2      42  0.0011   15.6   4.4   26   95-120   303-328 (365)
389 cd01131 PilT Pilus retraction   33.2      42  0.0011   15.6   3.9   84    2-97     30-121 (198)
390 COG3959 Transketolase, N-termi  33.1      43  0.0011   15.6   4.8   70   49-119   146-226 (243)
391 cd00223 TOPRIM_TopoIIB_SPO TOP  32.9      43  0.0011   15.5   4.4   22    3-24      1-22  (160)
392 PRK13129 consensus              32.8      43  0.0011   15.5  11.2   46   63-111    85-136 (267)
393 TIGR01108 oadA oxaloacetate de  32.7      43  0.0011   15.5   3.7   86   11-102   116-223 (616)
394 COG0313 Predicted methyltransf  32.6      43  0.0011   15.5   9.3   74    5-86     33-116 (275)
395 PRK13227 consensus              32.5      44  0.0011   15.5   5.0   53   62-119   102-165 (228)
396 cd02932 OYE_YqiM_FMN Old yello  32.4      44  0.0011   15.5   7.3   65   36-103   241-317 (336)
397 cd03301 ABC_MalK_N The N-termi  32.0      44  0.0011   15.5   5.4   74   12-85    105-190 (213)
398 PRK05899 transketolase; Review  32.0      44  0.0011   15.5   5.7   52    4-55    182-250 (661)
399 cd06333 PBP1_ABC-type_HAAT_lik  31.9      44  0.0011   15.5  11.2   88    3-94    134-232 (312)
400 pfam09001 DUF1890 Domain of un  31.8      45  0.0011   15.4   7.3   98   15-118    16-137 (138)
401 PRK00652 lpxK tetraacyldisacch  31.6      45  0.0011   15.4   4.2   31   24-54    119-149 (334)
402 cd05013 SIS_RpiR RpiR-like pro  31.5      45  0.0012   15.4   8.6   85    3-92     14-103 (139)
403 PRK07428 nicotinate-nucleotide  31.5      45  0.0012   15.4  11.8   94    5-103   166-266 (285)
404 COG0135 TrpF Phosphoribosylant  31.3      46  0.0012   15.4   6.5   84   10-99     85-176 (208)
405 PRK03094 hypothetical protein;  31.0      46  0.0012   15.4   2.7   58   15-86     10-67  (80)
406 PRK02472 murD UDP-N-acetylmura  31.0      46  0.0012   15.4   7.2   54   45-104    71-144 (450)
407 PRK09984 phosphonate/organopho  31.0      46  0.0012   15.4   4.3   70   14-83    129-210 (262)
408 PRK06823 ornithine cyclodeamin  30.7      47  0.0012   15.3   5.7   38    3-40    154-191 (315)
409 PRK01033 imidazole glycerol ph  30.5      47  0.0012   15.3   8.0   64   36-102   155-223 (253)
410 PRK07259 dihydroorotate dehydr  30.5      47  0.0012   15.3   4.4   70   32-104   100-188 (301)
411 pfam01116 F_bP_aldolase Fructo  30.4      47  0.0012   15.3  10.5   90    9-102   109-228 (283)
412 cd06332 PBP1_aromatic_compound  30.4      47  0.0012   15.3  13.5   90    3-94    135-232 (333)
413 cd02991 UAS_ETEA UAS family, E  30.2      48  0.0012   15.3   7.2   72   37-122    44-115 (116)
414 COG1182 AcpD Acyl carrier prot  30.2      48  0.0012   15.3   4.3   52    2-65      1-57  (202)
415 PRK13943 protein-L-isoaspartat  30.1      28 0.00072   16.6   1.4   92    4-99    102-195 (317)
416 pfam04309 G3P_antiterm Glycero  30.1      48  0.0012   15.3   6.9   61   35-103   105-166 (174)
417 PRK11188 rrmJ 23S rRNA methylt  30.0      43  0.0011   15.5   2.4   29   40-69    111-139 (209)
418 cd03800 GT1_Sucrose_synthase T  30.0      48  0.0012   15.3   4.1   53   61-122   316-368 (398)
419 cd02007 TPP_DXS Thiamine pyrop  30.0      34 0.00086   16.1   1.8   69   49-119   102-176 (195)
420 cd06298 PBP1_CcpA_like Ligand-  29.9      48  0.0012   15.2   8.6   66   10-82     10-84  (268)
421 cd03300 ABC_PotA_N PotA is an   29.6      49  0.0012   15.2   3.9   72   14-85    107-190 (232)
422 COG3640 CooC CO dehydrogenase   29.4      49  0.0013   15.2   7.7   99   11-110   119-222 (255)
423 PRK05748 replicative DNA helic  29.4      49  0.0013   15.2   5.6   69   18-86    279-365 (448)
424 pfam02572 CobA_CobO_BtuR ATP:c  29.3      49  0.0013   15.2   4.4   51   41-94     91-146 (172)
425 PRK06483 short chain dehydroge  29.1      50  0.0013   15.2   8.9   80    1-84      1-82  (236)
426 pfam02423 OCD_Mu_crystall Orni  29.1      50  0.0013   15.2   5.5   39    2-40    154-192 (312)
427 COG0077 PheA Prephenate dehydr  29.0      50  0.0013   15.2   5.9   77    7-84    101-182 (279)
428 PRK03372 ppnK inorganic polyph  29.0      50  0.0013   15.2  10.3  100    2-121     4-124 (303)
429 KOG2335 consensus               28.9      50  0.0013   15.1   8.2   96    7-104   122-232 (358)
430 KOG0780 consensus               28.9      50  0.0013   15.1   7.0   60   35-94    172-233 (483)
431 TIGR01425 SRP54_euk signal rec  28.9      50  0.0013   15.1   4.8   61   35-95    192-254 (453)
432 cd03297 ABC_ModC_molybdenum_tr  28.6      51  0.0013   15.1   4.1   72   14-85    108-191 (214)
433 PRK07773 replicative DNA helic  28.6      51  0.0013   15.1   3.8   43   43-85    310-362 (868)
434 cd06394 PBP1_iGluR_Kainate_KA1  28.5      51  0.0013   15.1   7.9   95   10-108   117-224 (333)
435 TIGR03659 IsdE heme ABC transp  28.5      51  0.0013   15.1   3.5   12   41-52     86-97  (289)
436 TIGR01526 nadR_NMN_Atrans nico  28.4      51  0.0013   15.1   4.2   80    3-86    249-341 (346)
437 cd04740 DHOD_1B_like Dihydroor  28.3      52  0.0013   15.1   4.0   55   46-103   115-184 (296)
438 PRK13116 consensus              28.2      52  0.0013   15.1  11.6   36   75-110    93-134 (278)
439 TIGR00734 hisAF_rel hisA/hisF   27.9      52  0.0013   15.0   4.9   99    3-104   104-221 (230)
440 PTZ00314 inosine-5'-monophosph  27.8      52  0.0013   15.0   9.8   65   37-104   241-306 (499)
441 pfam03830 PTSIIB_sorb PTS syst  27.7      53  0.0013   15.0   4.3   45    2-47     26-73  (151)
442 PRK10867 signal recognition pa  27.7      53  0.0013   15.0   9.1  103    2-104   129-247 (453)
443 cd06274 PBP1_FruR Ligand bindi  27.5      53  0.0014   15.0   8.7   42   11-52     11-61  (264)
444 pfam10672 Methyltrans_SAM S-ad  27.4      53  0.0014   15.0   7.8   53    2-54    146-203 (286)
445 cd03820 GT1_amsD_like This fam  27.4      54  0.0014   15.0   4.6   54   61-122   266-319 (348)
446 COG2804 PulE Type II secretory  27.4      54  0.0014   15.0   5.5   18   85-102   362-379 (500)
447 COG2242 CobL Precorrin-6B meth  27.3      54  0.0014   15.0   4.7   90    3-100    59-154 (187)
448 pfam01884 PcrB PcrB family. Th  27.3      54  0.0014   15.0   6.1   61   36-105    22-82  (231)
449 cd03811 GT1_WabH_like This fam  27.2      54  0.0014   15.0   4.3   51   61-120   277-327 (353)
450 KOG0189 consensus               27.2      54  0.0014   15.0   3.4   68   14-83     34-106 (261)
451 KOG2292 consensus               27.0      54  0.0014   14.9   4.5   46    1-52    556-601 (751)
452 PRK06111 acetyl-CoA carboxylas  26.9      55  0.0014   14.9   4.9   40    1-41      1-40  (449)
453 COG3828 Uncharacterized protei  26.8      21 0.00054   17.3   0.3   60    1-61      2-67  (239)
454 cd04734 OYE_like_3_FMN Old yel  26.8      55  0.0014   14.9   7.1   44   57-103   269-312 (343)
455 cd01139 TroA_f Periplasmic bin  26.7      55  0.0014   14.9   5.5   43   39-85     84-127 (342)
456 cd00381 IMPDH IMPDH: The catal  26.7      55  0.0014   14.9   7.7   62   39-103    99-161 (325)
457 PRK09177 xanthine-guanine phos  26.5      31  0.0008   16.3   1.2   15   12-26     16-30  (156)
458 TIGR02478 6PF1K_euk 6-phosphof  26.5      16 0.00042   17.9  -0.3  106   13-118   486-621 (777)
459 pfam02581 TMP-TENI Thiamine mo  26.5      56  0.0014   14.9   9.0   68   30-102   100-174 (180)
460 cd04962 GT1_like_5 This family  26.4      56  0.0014   14.9   4.3   43   75-121   293-335 (371)
461 PRK13111 trpA tryptophan synth  26.2      56  0.0014   14.9  10.7   47   62-111    74-126 (256)
462 PRK12727 flagellar biosynthesi  25.9      57  0.0015   14.8  10.9  101    3-105   379-491 (557)
463 pfam01497 Peripla_BP_2 Peripla  25.6      58  0.0015   14.8   5.6   74   39-120    53-126 (236)
464 PRK07102 short chain dehydroge  25.5      58  0.0015   14.8   5.9   42    2-43      1-42  (243)
465 cd00452 KDPG_aldolase KDPG and  25.4      58  0.0015   14.8   9.5   95    7-108    10-127 (190)
466 cd01143 YvrC Periplasmic bindi  25.4      58  0.0015   14.8   5.4   72   39-120    53-125 (195)
467 cd06280 PBP1_LacI_like_4 Ligan  25.4      58  0.0015   14.8   7.6   65   11-83     11-84  (263)
468 COG2236 Predicted phosphoribos  25.3      48  0.0012   15.3   1.9   16    3-18     88-103 (192)
469 PRK08006 replicative DNA helic  25.3      59  0.0015   14.8   3.6   68   19-86    302-386 (471)
470 PRK13555 azoreductase; Provisi  25.2      59  0.0015   14.8   4.7   12    2-13      1-12  (208)
471 TIGR00644 recJ single-stranded  25.0      59  0.0015   14.7   4.8   45   16-60    105-153 (705)
472 PRK05973 replicative DNA helic  24.9      59  0.0015   14.7   3.1   41   45-85    146-192 (237)
473 PRK08840 replicative DNA helic  24.8      60  0.0015   14.7   3.9   66   21-86    297-379 (464)
474 cd03296 ABC_CysA_sulfate_impor  24.7      60  0.0015   14.7   3.9   74   12-85    111-196 (239)
475 PRK13136 consensus              24.7      60  0.0015   14.7  11.0   45   63-110    78-127 (253)
476 cd06346 PBP1_ABC_ligand_bindin  24.6      60  0.0015   14.7  12.2  113    3-119   138-266 (312)
477 cd03801 GT1_YqgM_like This fam  24.6      60  0.0015   14.7   4.4   44   75-122   298-341 (374)
478 PRK13125 trpA tryptophan synth  24.6      60  0.0015   14.7  11.6  107   12-122   118-245 (247)
479 COG3854 SpoIIIAA ncharacterize  24.4      53  0.0013   15.0   2.0   80    2-87    170-253 (308)
480 PRK01122 potassium-transportin  24.3      61  0.0016   14.7   5.3   57   58-119   452-508 (684)
481 PRK01659 consensus              24.3      61  0.0016   14.7   7.6   79   37-118   157-246 (252)
482 PRK04161 tagatose 1,6-diphosph  24.3      61  0.0016   14.6   6.9   61   44-104   196-276 (326)
483 cd06283 PBP1_RegR_EndR_KdgR_li  24.2      61  0.0016   14.6   9.2   66   10-82     10-84  (267)
484 KOG2550 consensus               24.1      62  0.0016   14.6   6.2   96    4-102   204-317 (503)
485 PRK13508 tagatose-6-phosphate   24.1      62  0.0016   14.6   8.6   68   45-116   125-192 (309)
486 PRK08099 nicotinamide-nucleoti  24.0      62  0.0016   14.6   8.3   86    2-95    302-399 (411)
487 TIGR03533 L3_gln_methyl protei  23.9      62  0.0016   14.6   7.2   46    4-52    147-195 (284)
488 pfam09243 Rsm22 Mitochondrial   23.9      62  0.0016   14.6   7.5  101    2-107    59-168 (275)
489 PRK06756 flavodoxin; Provision  23.9      62  0.0016   14.6   4.7   91   11-107     5-112 (138)
490 PRK09932 glycerate kinase II;   23.9      62  0.0016   14.6   3.7   71   45-120   283-362 (381)
491 cd06345 PBP1_ABC_ligand_bindin  23.7      63  0.0016   14.6  12.1   84    3-90    145-239 (344)
492 PRK05586 biotin carboxylase; V  23.6      63  0.0016   14.6   4.3   38    1-39      1-38  (447)
493 PRK06141 ornithine cyclodeamin  23.2      64  0.0016   14.5   5.5   40    2-41    150-189 (313)
494 PRK10563 6-phosphogluconate ph  23.1      65  0.0016   14.5   3.7  105    6-118    14-154 (221)
495 PRK07807 inositol-5-monophosph  23.1      65  0.0017   14.5   9.6   66   34-102   227-293 (479)
496 TIGR00587 nfo apurinic endonuc  23.0      58  0.0015   14.8   2.0   21   61-81    270-290 (318)
497 cd02930 DCR_FMN 2,4-dienoyl-Co  23.0      65  0.0017   14.5   6.6   82   11-103   222-303 (353)
498 PRK05693 short chain dehydroge  22.9      65  0.0017   14.5   7.3   54    2-55      1-54  (274)
499 cd01146 FhuD Fe3+-siderophore   22.9      65  0.0017   14.5   3.3   74   39-122    58-131 (256)
500 PRK00861 putative lipid kinase  22.9      65  0.0017   14.5   6.2   52    1-52      1-63  (296)

No 1  
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879    PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=100.00  E-value=6.9e-39  Score=244.15  Aligned_cols=123  Identities=29%  Similarity=0.521  Sum_probs=121.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      |.++||||||++..++.++-.|+..||+|.+|.||++|..+++++.||+|+|||+||+.+|+||||++|+.+.++++|||
T Consensus         1 m~~~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPII   80 (226)
T TIGR02154         1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILLDWMLPGTSGIELARRLRREPETRAIPII   80 (226)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf             98725677082689999999841689469980797999999860799889961478997569999873476331488817


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             9992499899999997699889987989899999999974039
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a  123 (123)
                      |+||.+.+.|....++.|||||++|||++.+|++.|+.+|+.+
T Consensus        81 MLTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~  123 (226)
T TIGR02154        81 MLTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRI  123 (226)
T ss_pred             EEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCC
T ss_conf             7405556000113113688750367886588999999998316


No 2  
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00  E-value=4.8e-34  Score=216.34  Aligned_cols=120  Identities=34%  Similarity=0.527  Sum_probs=116.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .|||+||||+.|+++++.+|+..|+.+..|.||.+|++.+++++||+||||++||+|||+|.+++||+.+..+++|||++
T Consensus       669 lrVLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIAl  748 (920)
T PRK11107        669 LTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAV  748 (920)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             74999848899999999999984988999899999999974799978998899999989999999981867898959999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             9249989999999769988998798989999999997403
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |++..++++++|+++|+++|++||++.+.|...+.+++..
T Consensus       749 TA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~~~  788 (920)
T PRK11107        749 TAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWKPG  788 (920)
T ss_pred             ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCC
T ss_conf             7998989999999779993872879999999999986788


No 3  
>PRK09581 pleD response regulator PleD; Reviewed
Probab=100.00  E-value=4.2e-33  Score=210.95  Aligned_cols=120  Identities=28%  Similarity=0.553  Sum_probs=116.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      |+.|||||||++.++..++..|+..||+|.+|.||++|++.+.+++||+|++|+.||+|||+|+|++||+.+...++|||
T Consensus         1 M~~rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVI   80 (457)
T PRK09581          1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVV   80 (457)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf             99719999498999999999998789999998999999999971899989992877999999999999659888998499


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             9992499899999997699889987989899999999974
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      ++|+.+......++++.|+++|+.||++...|+.+++..+
T Consensus        81 vlTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~  120 (457)
T PRK09581         81 MVTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLT  120 (457)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             9978999999999986488789989999899999999999


No 4  
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00  E-value=1.4e-32  Score=207.98  Aligned_cols=118  Identities=25%  Similarity=0.566  Sum_probs=113.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .+|||||||+.|+++++.+|+..|+++.+|.||.||++.+++++||+|++|++||+|||+|++++||+..  .++|||++
T Consensus       825 lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EALe~l~~~~fDLILMDIqMPvMDGyEaTr~IRe~~--~~iPIIAL  902 (947)
T PRK10841        825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGV  902 (947)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCC--CCCEEEEE
T ss_conf             8899990789999999999997699999989999999997569989899708889980999999998089--84949999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             9249989999999769988998798989999999997403
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ||+...+++++|+++|+++||+||++.+.|.+++.++.++
T Consensus       903 TAnA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~Y~~~  942 (947)
T PRK10841        903 TANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER  942 (947)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             3899989999999879999997989799999999999877


No 5  
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=100.00  E-value=6.1e-32  Score=204.26  Aligned_cols=122  Identities=26%  Similarity=0.433  Sum_probs=118.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      |++|||+||||+..++.++..|+..||+|..|.+|++|++.+.++.||+|++|++||++||++++++||+....+++|||
T Consensus         1 M~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII   80 (229)
T PRK10161          1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV   80 (229)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf             99719999599999999999999779999998999999999852899899997899887633587887750246897589


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ++|+.+...+..++++.|+++|++|||++++|+.+|+.++++
T Consensus        81 ~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR  122 (229)
T PRK10161         81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR  122 (229)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             995566657799998769876520899989999999999712


No 6  
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00  E-value=1.7e-31  Score=201.76  Aligned_cols=120  Identities=30%  Similarity=0.536  Sum_probs=112.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC-CCEE
Q ss_conf             877899539989999999999978989999889799999998279989999504129695999999982857689-9599
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE-IPVI   80 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~-ipii   80 (123)
                      ..|||+||||+.|+.+++.+|+.+|+.|.+|.||.+|++.++.++||+|++|++||+|||||++++||+...... +|||
T Consensus       525 ~lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~PII  604 (779)
T PRK11091        525 ALNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPPLV  604 (779)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf             88189986889999999999997599999989999999985069999899828999997899999998425768999279


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ++|++... ++++++++|+++||+||++.+.|.+.+.++++.
T Consensus       605 ALTAna~~-d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~~  645 (779)
T PRK11091        605 ALTANVLK-DKQEYLDAGMDDVLSKPLSVPALTAMIKKFWDT  645 (779)
T ss_pred             EEECCCCH-HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf             88187417-699999769984751889899999999998464


No 7  
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.97  E-value=7.5e-31  Score=197.99  Aligned_cols=116  Identities=22%  Similarity=0.445  Sum_probs=110.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      -+|||||||+.||.+++.+|+..|+.+..|.||.+|++.+++++||+|++|++||+|||+|++++||+..  ..+|||++
T Consensus       959 l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~~fDlILmDi~MP~MDG~e~tr~IR~~~--~~~PIial 1036 (1197)
T PRK09959        959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGL 1036 (1197)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCC--CCCCEEEE
T ss_conf             8799979989999999999998399999989999999997669999999879789998999999996469--86948999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             92499899999997699889987989899999999974
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      |++..+++.++|+++|+++||.||++.+.|.+.+.++.
T Consensus      1037 TA~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~~~ 1074 (1197)
T PRK09959       1037 TANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             79999999999997699834518898999999998531


No 8  
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.97  E-value=1.3e-30  Score=196.62  Aligned_cols=120  Identities=25%  Similarity=0.448  Sum_probs=115.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             7789953998999999999997898-999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~-~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      -||||||||+..|+.++.+|+.+|| .+.+|+||.+|++.++++.||+|++|++||++||+|++++||+....+++|||+
T Consensus         6 lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii~   85 (129)
T PRK10610          6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM   85 (129)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf             89999979899999999999986997899989999999999858999999818999998999999998577778996899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+........++.++|+++|+.|||++++|.+++++++.+
T Consensus        86 ~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r  126 (129)
T PRK10610         86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK  126 (129)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             98868999999999869988998989999999999999976


No 9  
>PRK10693 response regulator of RpoS; Provisional
Probab=99.97  E-value=3.7e-30  Score=194.02  Aligned_cols=118  Identities=25%  Similarity=0.443  Sum_probs=110.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      .||||||||++..|+.++.+|+.+||+|..|.||++|++.+.++.||+|++|+.||+|||+|++++||+..  ..+|||+
T Consensus         7 gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~--~~~PVIv   84 (337)
T PRK10693          7 GKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRG--DQTPVLV   84 (337)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCEEEE
T ss_conf             99899994999999999999997899999989999999998658999999968999999899999999858--9964999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf             99249989999999769988998798-98999999999740
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIG  121 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~~~l~  121 (123)
                      +|+++...+..+++++|++|||+||| +..+|.+++.+.+.
T Consensus        85 lTa~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~  125 (337)
T PRK10693         85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY  125 (337)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf             98689999999999749958997896999999999998751


No 10 
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.97  E-value=1.1e-29  Score=191.28  Aligned_cols=119  Identities=26%  Similarity=0.411  Sum_probs=114.0

Q ss_pred             CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             987-7899539989999999999978989999889799999998279989999504129695999999982857689959
Q gi|254780476|r    1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         1 m~k-kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |.| |||||||++..|+.++..|+..||+|.+|.||.+|++.+.++.||+|++|+.||++||+++++++|+..  ..+||
T Consensus         1 M~k~kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~--~~~pv   78 (469)
T PRK10923          1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPV   78 (469)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCCE
T ss_conf             9999799994989999999999987799899989999999998669999998789999989999999998429--89978


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++|+++......++++.|+.+||.||+++++|..++++++.
T Consensus        79 IviT~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~  120 (469)
T PRK10923         79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS  120 (469)
T ss_pred             EEEECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             999899998999999855704430088999999999999999


No 11 
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291   Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.97  E-value=1.8e-31  Score=201.48  Aligned_cols=117  Identities=24%  Similarity=0.483  Sum_probs=113.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             89953998999999999997898999988979999999827998999950412969599999998285768995999992
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      ||||||++-..++++.-|+..||.+..++||.++|.++.++.||+||||++||+||||+++++||+..  +..||+++||
T Consensus         1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~--~~~PVl~LTA   78 (219)
T TIGR01387         1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSG--KETPVLFLTA   78 (219)
T ss_pred             CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC--CCCCEEEEEC
T ss_conf             96763086026765305201234798877686247543688830899632588950689999984078--9873488833


Q ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             499899999997699889987989899999999974039
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a  123 (123)
                      .+.-.|+.+.+++||+|||.|||++.+|+++|++.|++|
T Consensus        79 ~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~  117 (219)
T TIGR01387        79 RDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRS  117 (219)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             788454353011478654137877603799999876775


No 12 
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.97  E-value=6.9e-30  Score=192.46  Aligned_cols=119  Identities=24%  Similarity=0.490  Sum_probs=113.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +.||||+||||+..++.+...|+..||.|..|.+|.+|++.+.++.||+|++|++||++||+++|++||+.   .++|||
T Consensus         5 ~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~LP~~dG~~l~~~iR~~---~~~PII   81 (240)
T CHL00148          5 SKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPII   81 (240)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCC---CCCCEE
T ss_conf             99829999398999999999999789999998999999999974799999997999988866305414037---995489


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ++|+.+...+...+++.|+++|++|||++++|+.+|+.+++.
T Consensus        82 ~LTa~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr  123 (240)
T CHL00148         82 MLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR  123 (240)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             981678989999999769978952784479999999999866


No 13 
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.97  E-value=1.9e-29  Score=189.87  Aligned_cols=117  Identities=18%  Similarity=0.377  Sum_probs=111.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             778995399899999999999789899998897999999982-7998999950412969599999998285768995999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      .|||+||||+.|+.+++.+|+..|+.|..|.||.+|++.+++ ++||+|++|++||+|||+|++++||+.  ...+|||+
T Consensus       682 lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~--~~~~pIIA  759 (912)
T PRK11466        682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ--YPSLVLIG  759 (912)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC--CCCCCEEE
T ss_conf             8699994878899999999998699899989999999999718998589876999999899999999861--99997899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             9924998999999976998899879898999999999740
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +|++..+++.+++..+|+++|+.||++++.|.+.+.+++.
T Consensus       760 lTA~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~  799 (912)
T PRK11466        760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ  799 (912)
T ss_pred             ECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf             7798788999999976998775498999999999999846


No 14 
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.97  E-value=5.9e-29  Score=187.09  Aligned_cols=119  Identities=25%  Similarity=0.423  Sum_probs=113.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ..|||+||||+..++.+...|+..||.|..+.+|.+|++.+.++.||+|++|++||++||++++++||+..  .++|||+
T Consensus         3 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~--~~~pII~   80 (229)
T PRK11083          3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFH--PALPVIF   80 (229)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCCEEEE
T ss_conf             99999996999999999999998899999989999999999718998999738899987688999999708--9972999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+.+...+...+++.|+++|+.|||++++|+.+|+..++.
T Consensus        81 lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR  121 (229)
T PRK11083         81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR  121 (229)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             83678989999999759987730874289999999999976


No 15 
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.97  E-value=3.8e-29  Score=188.16  Aligned_cols=117  Identities=21%  Similarity=0.464  Sum_probs=112.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |||+||||+..++.++.+|+..||+|..|.||.+|++.+..+.||+|++|++||++||+++|++||+..  .++|||++|
T Consensus         2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~--~~~PII~Lt   79 (226)
T PRK09836          2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLT   79 (226)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCEEEEEE
T ss_conf             899993999999999999987899999989999999998518999999889999998720435677616--796099994


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             249989999999769988998798989999999997403
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +.+...+..++++.|+++|+.|||++++|+.+++..++.
T Consensus        80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr  118 (226)
T PRK09836         80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR  118 (226)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             458988999999769968863687679999999999662


No 16 
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.97  E-value=3e-29  Score=188.79  Aligned_cols=117  Identities=20%  Similarity=0.321  Sum_probs=112.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |||+||||+..++.++..|+..||+|..|.+|.+|++.+.+++||+|++|++||++||++++++||+..  ..+|||++|
T Consensus         2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~--~~~PII~lt   79 (219)
T PRK10336          2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKG--QREPVLILT   79 (219)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHC--CCCCEEEEE
T ss_conf             899993899999999999998799999989999999998628969999979999998563101046527--888789980


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             249989999999769988998798989999999997403
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +.+...+..+++++|+++|+.|||++++|+.+|+..++.
T Consensus        80 a~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr  118 (219)
T PRK10336         80 ARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR  118 (219)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             689999999999769988868897679999999999611


No 17 
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.97  E-value=1.3e-29  Score=190.83  Aligned_cols=118  Identities=17%  Similarity=0.291  Sum_probs=112.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |+|||+||||+..++.++..|+..||+|..|.+|.+|++.+.++.||+|++|++||++||+++|++||+.   .++|||+
T Consensus         1 M~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PiI~   77 (240)
T PRK10701          1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPK---WSGPIVL   77 (240)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCC---CCCCEEE
T ss_conf             9989999799999999999998879999998999999999861799999992899767887876311025---8987899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+.....+...+++.|+++|++|||++.+|+.+|+..+++
T Consensus        78 lta~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr  118 (240)
T PRK10701         78 LTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ  118 (240)
T ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             94057578899999768877641799879999999999965


No 18 
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.97  E-value=4.3e-29  Score=187.89  Aligned_cols=111  Identities=33%  Similarity=0.656  Sum_probs=107.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             89953998999999999997898999988979999999827998999950412969599999998285768995999992
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      ||+||||+.+|+.++.+|+.+||++.++.||++|++.+++++||+|++|++||++||++++++||+..  +++|||++|+
T Consensus         1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~--~~~piI~~T~   78 (111)
T pfam00072         1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRP--PTTPVIVLTA   78 (111)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCEEEEEEC
T ss_conf             09998989999999999998899999989999999999847998999953689950157999997359--9980999975


Q ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             499899999997699889987989899999999
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      +.......++.+.|+++|+.||+++++|+++|+
T Consensus        79 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir  111 (111)
T pfam00072        79 HGDEEDAVEALKAGANDFLSKPFDPEELVAALR  111 (111)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf             089999999997798779949999899998529


No 19 
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.96  E-value=8.1e-29  Score=186.30  Aligned_cols=116  Identities=26%  Similarity=0.467  Sum_probs=111.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |||+||||+..++.++..|+..||+|.+|.||.+|++.+.++.||+|++|++||++||++++++||+.   .++|||++|
T Consensus         2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~---~~~pII~lt   78 (223)
T PRK11517          2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLT   78 (223)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC---CCCCEEEEE
T ss_conf             89999698999999999999889999998999999999852899999984999873689999999856---886489995


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             249989999999769988998798989999999997403
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +.+...+..++++.|+++|+.|||++++|+.+++..+++
T Consensus        79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr  117 (223)
T PRK11517         79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ  117 (223)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             655657899999839877620897789999999999641


No 20 
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.96  E-value=7.8e-29  Score=186.40  Aligned_cols=118  Identities=25%  Similarity=0.467  Sum_probs=113.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ++|||||||++..|+.++..|+..||+|.+|.||.+|++.+.+++||+|++|+.||++||++++++||+..  .++|||+
T Consensus         4 ~~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~DlvllDi~mP~~~Glell~~ir~~~--p~~pvIv   81 (457)
T PRK11361          4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPVIL   81 (457)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf             99289983999999999999997799899989999999998668989999828799999999999998209--8993899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             9924998999999976998899879898999999999740
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +|+++......++++.|+.+|+.|||++++|..++++++.
T Consensus        82 lTa~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~  121 (457)
T PRK11361         82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ  121 (457)
T ss_pred             EECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9689998999999975966325699999999999999999


No 21 
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.96  E-value=1e-28  Score=185.68  Aligned_cols=118  Identities=19%  Similarity=0.340  Sum_probs=112.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .||||||||+..++.++..|+..||.|..|.+|.+|++.+..+.||+|++|++||++||++++++||+..  ..+|||++
T Consensus         6 ~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~--~~~pII~L   83 (239)
T PRK09468          6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQN--NPTPIIML   83 (239)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHC--CCCCEEEE
T ss_conf             7899990999999999999998899999989999999999758998999878998888734677787505--78778999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             9249989999999769988998798989999999997403
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |+.+...+..++++.|+++|++|||++++|+.+|+..++.
T Consensus        84 Ta~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR  123 (239)
T PRK09468         84 TAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRR  123 (239)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             4667878999999769868855899989999999999863


No 22 
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.96  E-value=3.4e-29  Score=188.47  Aligned_cols=117  Identities=22%  Similarity=0.465  Sum_probs=110.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |+|||+||||+..++.++..|+..||+|..|.+|++|++.+. +.||+|++|++||++||++++++||+.   .++|||+
T Consensus         1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~---~~~PII~   76 (232)
T PRK10955          1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT---HQTPVIM   76 (232)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC---CCCCEEE
T ss_conf             988999969899999999999888999999899999999964-898999991899988867230124407---8887899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+.+...+...+++.|+++|+.|||++++|+.+|+.+++.
T Consensus        77 lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR  117 (232)
T PRK10955         77 LTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR  117 (232)
T ss_pred             EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf             80556768899999769757633899989999999999761


No 23 
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.96  E-value=4e-29  Score=188.04  Aligned_cols=118  Identities=25%  Similarity=0.461  Sum_probs=112.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |+|||+||||+..++.++..|+..||+|..|.+|++|+..+..+.||+|++|++||++||++++++||+.   .++|||+
T Consensus         1 M~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~---~~~pII~   77 (225)
T PRK10529          1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVIV   77 (225)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC---CCCCEEE
T ss_conf             9989999798999999999999889999997999999998611799899980788888876331000127---9987899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+.+...+...+++.|+++|+.|||++++|..+++..++.
T Consensus        78 lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr  118 (225)
T PRK10529         78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR  118 (225)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             95468989999999769876540785459999999999714


No 24 
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.96  E-value=5.4e-29  Score=187.31  Aligned_cols=118  Identities=24%  Similarity=0.402  Sum_probs=113.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      |++|||+||||+..++.+...|+..||+|..|.||++|++.+.++.||+|++|+.||++||++++++||+..   ++|||
T Consensus         1 M~~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~~---~~piI   77 (224)
T PRK10766          1 MSYHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRS---TVGII   77 (224)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC---CCCEE
T ss_conf             997199991999999999999998799999989999999999608999999889999887661376763047---85568


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99924998999999976998899879898999999999740
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ++|+.+...+...++++|+++|+.||+++++|+.+|+..++
T Consensus        78 ~lta~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allr  118 (224)
T PRK10766         78 LVTGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLW  118 (224)
T ss_pred             EECCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             63355898999999984941451399988999999999972


No 25 
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.96  E-value=2.7e-28  Score=183.32  Aligned_cols=113  Identities=34%  Similarity=0.626  Sum_probs=109.1

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             99539989999999999978989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      |||||++.+|+.++.+|+.+||++.+|.||.+|++.+++++||+|++|++||++||++++++||+.  .+++|||++|++
T Consensus         1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~--~~~~pvI~lT~~   78 (113)
T cd00156           1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTAH   78 (113)
T ss_pred             CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH--CCCCCEEEEECC
T ss_conf             989272999999999999889999998999999999875799999977999898726999999985--899959999787


Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             99899999997699889987989899999999974
Q gi|254780476|r   86 AMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        86 ~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      ...+...++.+.|+++|+.||++.++|.+++++++
T Consensus        79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l  113 (113)
T cd00156          79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL  113 (113)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf             89999999997689789969899999999999869


No 26 
>PRK11173 two-component response regulator; Provisional
Probab=99.96  E-value=4.1e-28  Score=182.24  Aligned_cols=118  Identities=21%  Similarity=0.416  Sum_probs=111.5

Q ss_pred             CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             987-7899539989999999999978989999889799999998279989999504129695999999982857689959
Q gi|254780476|r    1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         1 m~k-kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |.+ |||+||||+..++.++.+|+..||.|..|.||.+|++.+..+.||+|++|++||++||++++++||+..   ++||
T Consensus         1 m~~~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~~---~~pi   77 (237)
T PRK11173          1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQA---NVAL   77 (237)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCC---CCCE
T ss_conf             9999899995989999999999998899999989999999998638998999938999887303555665168---8478


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++|+.....+...++++|+++|+.||+++++|...++..+.
T Consensus        78 I~lta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~  119 (237)
T PRK11173         78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS  119 (237)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             999432577889999976976788789887999999999986


No 27 
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.96  E-value=5.6e-28  Score=181.48  Aligned_cols=119  Identities=26%  Similarity=0.517  Sum_probs=114.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .|||+|||++..++.+...|+..||.+..+.+|.+|++.+... ||+|++|++||++||+++|++||+. ....+|||++
T Consensus         1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi~L   78 (229)
T COG0745           1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPIIVL   78 (229)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHC-CCCCCCEEEE
T ss_conf             9899991888999999999987597899978989999997269-9999998899985689999999851-6899988999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             92499899999997699889987989899999999974039
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a  123 (123)
                      |+.+...+....+++|+++|++|||++.+|+.+++.+++.+
T Consensus        79 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~  119 (229)
T COG0745          79 TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN  119 (229)
T ss_pred             ECCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf             66872888999997563423348899899999999996736


No 28 
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.96  E-value=7.8e-28  Score=180.67  Aligned_cols=117  Identities=25%  Similarity=0.459  Sum_probs=112.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      -+||||||++..+..++.+|+..||+|.+|.+|.+|++.+.++.||+|++|+.||++||+++++++|+..  .++|||++
T Consensus         6 ~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~~--p~~pvIvi   83 (441)
T PRK10365          6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALN--PAIPVLIM   83 (441)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCCCEEEE
T ss_conf             8599983989999999999997799899989999999998648999999889999998999999998429--89828999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             924998999999976998899879898999999999740
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |+++......++++.|+.+|+.||+++++|...|++++.
T Consensus        84 T~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~  122 (441)
T PRK10365         84 TAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA  122 (441)
T ss_pred             ECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             699998999999982851234078889999999999999


No 29 
>PRK13557 histidine kinase; Provisional
Probab=99.96  E-value=8.8e-28  Score=180.35  Aligned_cols=118  Identities=23%  Similarity=0.377  Sum_probs=110.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             87789953998999999999997898999988979999999827-998999950412-9695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQ-EISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-~~dlillD~~mp-~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      .++|||||||+.+|++++.+|+.+||.|.+|.||.+|++++.++ +||+|++|+.|| +|||+++++++|+.  ...+||
T Consensus       413 ~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~--~p~i~i  490 (538)
T PRK13557        413 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRR--QPKIKV  490 (538)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHH--CCCCEE
T ss_conf             725899679899999999999976999999899999999996099988998877799998899999999853--899839


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++|++............|..+||.|||+.++|+.+|+++|.
T Consensus       491 i~~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~  532 (538)
T PRK13557        491 LLTTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLD  532 (538)
T ss_pred             EEEECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf             999799877889977528998888198999999999999867


No 30 
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.96  E-value=2.2e-27  Score=178.05  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=108.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH-CCCE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             7789953998999999999997-8989-9998897999999982799899995041296959999999828576899599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIET-SGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~-~g~~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      -|||||||++..++.++.+|+. .||. +..|.||.+|++.+++++||+|++|+.||++||++++++||+..  .++|||
T Consensus         5 i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~--~~~~VI   82 (225)
T PRK10046          5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAH--YPGDVV   82 (225)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
T ss_conf             869999598999999999997289954999989999999999735999999828989997999999999648--799889


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99924998999999976998899879898999999999740
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ++|+++..+...++++.|+.+||.|||++++|.+++.++-.
T Consensus        83 ~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~  123 (225)
T PRK10046         83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ  123 (225)
T ss_pred             EEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf             99689999999999974998310289999999999999999


No 31 
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.96  E-value=2.5e-27  Score=177.78  Aligned_cols=117  Identities=18%  Similarity=0.378  Sum_probs=110.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |||||+||||+..++.+..+|+..||.|..|.+|.+|++.+..+.||++++|++||++||++++++||+.   .++|+|+
T Consensus         1 M~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~---~~~piii   77 (241)
T PRK13856          1 MKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIII   77 (241)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC---CCCCEEE
T ss_conf             9989999698999999999998779999998999999999865999999996999876613455564036---9973699


Q ss_pred             EEEC-CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             9924-998999999976998899879898999999999740
Q gi|254780476|r   82 VTAF-AMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        82 ~t~~-~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +|+. ....+...+++.|+++|+.|||++++|+.+++..++
T Consensus        78 lt~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lr  118 (241)
T PRK13856         78 ISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR  118 (241)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             97267878999999876998899777677799999999987


No 32 
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.95  E-value=1.3e-27  Score=179.33  Aligned_cols=118  Identities=29%  Similarity=0.434  Sum_probs=112.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      +.|||+|||++..++.++..|+..||.|..|.+|.+|++.+.++.||+|++|++||++||+++++++|+.+   ++|||+
T Consensus        10 ~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~~---~~piI~   86 (240)
T PRK10710         10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFS---DIPIVM   86 (240)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCC---CCCEEE
T ss_conf             88799992989999999999998899999989999999999737998999879998887763211221157---646899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+.....+...++++|+++|+.||+++++|+.+++.+++.
T Consensus        87 lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr  127 (240)
T PRK10710         87 VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR  127 (240)
T ss_pred             ECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf             81678889999999869987600776538999999999845


No 33 
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.95  E-value=3.6e-27  Score=176.86  Aligned_cols=117  Identities=23%  Similarity=0.354  Sum_probs=112.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |||+|||++..++.++..|+..||.|..|.+|.+|++.+..+.||+|++|++||++||+++++++|+..  ..+|||++|
T Consensus         2 kILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~--~~~pII~lt   79 (222)
T PRK10643          2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKK--YTLPVLILT   79 (222)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC--CCCCEEEEE
T ss_conf             799992889999999999997899999989999999999748998999968889986226899998348--998899982


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             249989999999769988998798989999999997403
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +.+...+...++++|+++|+.||+++++|+.+++.+++.
T Consensus        80 ~~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr  118 (222)
T PRK10643         80 ARDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRR  118 (222)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             103678899999759977643887689999999999703


No 34 
>KOG0519 consensus
Probab=99.95  E-value=1.5e-27  Score=178.95  Aligned_cols=119  Identities=30%  Similarity=0.533  Sum_probs=114.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             877899539989999999999978989999889799999998-2799899995041296959999999828576899599
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~-~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      .+|||+||||..++++...+|+..|.++.++.+|.||++.++ .+.||+||+|++||+|||+|.+++||+... .++|||
T Consensus       666 g~~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~pIv  744 (786)
T KOG0519         666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLPIV  744 (786)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCEE
T ss_conf             6765785587101999998999739645742886999986389986327999757755554999999987516-788779


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99924998999999976998899879898999999999740
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ++||...+...++|++.|+++||.|||+.+.|...+.+++.
T Consensus       745 AlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~  785 (786)
T KOG0519         745 ALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL  785 (786)
T ss_pred             EEECCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf             97468757889999982876467463318999999999733


No 35 
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.95  E-value=2.9e-27  Score=177.39  Aligned_cols=117  Identities=22%  Similarity=0.429  Sum_probs=112.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |||+||||+..++.+...|+..||+|..|.+|.+|++.+.++.||++++|++||++||++++++||+..  .++|||++|
T Consensus         2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~--~~~piI~lt   79 (223)
T PRK10816          2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLT   79 (223)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCC--CCCCEEEEE
T ss_conf             899995989999999999997899999989999999999757998999979998988640012011048--987689994


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             249989999999769988998798989999999997403
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +.....+..+++++|+++|+.||++.++|..+++.+++.
T Consensus        80 a~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr  118 (223)
T PRK10816         80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR  118 (223)
T ss_pred             CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf             445677899999869988641897778999999999665


No 36 
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.95  E-value=9.1e-27  Score=174.52  Aligned_cols=120  Identities=18%  Similarity=0.299  Sum_probs=113.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      ...+||||||++..|+.++.+|+..||.|..+.+|+++++.+.+.+||++++|++||++||++++++||+..  .++|||
T Consensus         2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~--p~~~vi   79 (202)
T PRK09390          2 TKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARG--SPLPVI   79 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCC--CCCCEE
T ss_conf             999799984999999999999998899899989999999997657979998779999989607999987228--998679


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ++|++.......++++.|+++|+.||+++++|.++|++++..
T Consensus        80 vlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~  121 (202)
T PRK09390         80 VMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ  121 (202)
T ss_pred             EEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             997457488889999829464455999999999999999971


No 37 
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.94  E-value=4.2e-26  Score=170.72  Aligned_cols=118  Identities=23%  Similarity=0.350  Sum_probs=108.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             87789953998999999999997-898999-988979999999--82799899995041296959999999828576899
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELA--RQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l--~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
                      |-||||||||+..++.++.+++. .||.+. +|+++.+|++.+  .+.+||+|++|+.||++||+|+++.||+..  .++
T Consensus         1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~--~~~   78 (239)
T PRK10430          1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS   78 (239)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf             987999929899999999998518990899998999999999965799985899789999997899999999858--998


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             59999924998999999976998899879898999999999740
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |||++|+....+...+++..|+.+||.|||++++|.+++.++..
T Consensus        79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~  122 (239)
T PRK10430         79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ  122 (239)
T ss_pred             EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf             19999726889999999983950304899999999999999999


No 38 
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052   Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery .  Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.94  E-value=2.2e-26  Score=172.35  Aligned_cols=120  Identities=25%  Similarity=0.474  Sum_probs=112.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             77899539989999999999978-98999-98897999999982799899995041296959999999828576899599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      =||+|+|||...+++|+++|+.+ .++|. +|.||.||++++++++||+++||+=||.+||+-+++++++........||
T Consensus         3 Iri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi   82 (270)
T TIGR02875         3 IRIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVI   82 (270)
T ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             28999828889999999998528983899741476899999960899899951504300057999998898874489588


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |+||++++.-.+++.++|||.|+.|||+.+.|-.+|++..+.
T Consensus        83 ~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~  124 (270)
T TIGR02875        83 MLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG  124 (270)
T ss_pred             EEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf             852237558999999728981566504178899999986246


No 39 
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.94  E-value=1.7e-25  Score=167.18  Aligned_cols=120  Identities=23%  Similarity=0.457  Sum_probs=114.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98778995399899999999999789899998897999999982799899995041296959999999828576899599
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      |+.+||+|||++..|..+...|+.+||.|.++.++.+|++.+.+..||+|++|+.||++||+++++++++..  ..+|||
T Consensus         3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~pVI   80 (464)
T COG2204           3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRD--PDLPVI   80 (464)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
T ss_conf             768789992978999999999997697489858999999998628999899816789996699999999638--999889


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ++|+++.-....++.+.|+-+|+.|||+++.|+..+++++..
T Consensus        81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~  122 (464)
T COG2204          81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL  122 (464)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             982889999999998557033321899999999999999987


No 40 
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.94  E-value=1.6e-25  Score=167.30  Aligned_cols=119  Identities=32%  Similarity=0.537  Sum_probs=110.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHH--HCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             8778995399899999999999--7898999-988979999999827998999950412969599999998285768995
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIE--TSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~--~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      |-|||||||.+..|+-++.++.  .+|+++. +|+||.+|++.+++++||+|++|++||+|||+++.+.+|+.  ..++-
T Consensus         1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~--~p~~~   78 (475)
T COG4753           1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQ--SPDTE   78 (475)
T ss_pred             CEEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCE
T ss_conf             9139996672999999998488563697578751457999999873499789981578887579999999974--99853


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99999249989999999769988998798989999999997403
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|++||++.-+...++++.|+.+||.||++.++|.+++.++.++
T Consensus        79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k  122 (475)
T COG4753          79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK  122 (475)
T ss_pred             EEEEECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf             99984642058999998618521220769899999999999999


No 41 
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302   This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.94  E-value=4.1e-26  Score=170.77  Aligned_cols=117  Identities=25%  Similarity=0.443  Sum_probs=113.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC------
Q ss_conf             78995399899999999999789899998897999999982-79989999504129695999999982857689------
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQE------   76 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~------   76 (123)
                      +||+||||+.|..+-+.+|++.|+.|..|.||++|++++.+ +.||++++|++|||.||..|.+++|+....++      
T Consensus       763 ~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p  842 (1052)
T TIGR02956       763 RVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEP  842 (1052)
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             13246447477999999984279447208549999999854887675455157889865678999999997320444567


Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             95999992499899999997699889987989899999999974
Q gi|254780476|r   77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      +|.|++||+-..++..+..++||++||.||+..++|...|.++|
T Consensus       843 ~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l  886 (1052)
T TIGR02956       843 VKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL  886 (1052)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             77222113344776999975302663479987788999999987


No 42 
>PRK13435 response regulator; Provisional
Probab=99.93  E-value=3.8e-25  Score=165.22  Aligned_cols=113  Identities=28%  Similarity=0.413  Sum_probs=102.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             7789953998999999999997898999-988979999999827998999950412-96959999999828576899599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQ-EISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp-~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      =|||||||++..+..++.+|+.+||++. +|.+|++|++.+++++||++++|++|| +++|+++++++++.+   .+|||
T Consensus         2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~~---~ipvI   78 (141)
T PRK13435          2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSIDG---GVEVI   78 (141)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCC---CCCEE
T ss_conf             789998998999999999999879979997599999999976599989997887899998999999998759---98389


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99924998999999976998899879898999999999740
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ++|++.   +......+|+.+|+.|||++++|.++++++++
T Consensus        79 ~lTa~~---d~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~  116 (141)
T PRK13435         79 FMTANP---ERVGHDFAGALGVIAKPYSLRQVARALSYVAA  116 (141)
T ss_pred             EEECCH---HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf             997779---98601345998589899998999999999997


No 43 
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.92  E-value=1e-24  Score=162.75  Aligned_cols=118  Identities=31%  Similarity=0.618  Sum_probs=114.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982-85768995999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE-DSELQEIPVIA   81 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~-~~~~~~ipii~   81 (123)
                      -+||+|||.+.++..++..|...||.+.+|.+|++|+++..+++||++++|++||+|||+|+|++|++ +|.+..+|+++
T Consensus        15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~   94 (360)
T COG3437          15 LTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVIL   94 (360)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             14889658666899999999742641464147507788751168856776425777659999999872497656532599


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             992499899999997699889987989899999999974
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      +|+++...+..++.+.|+++|+.||+++.+|..+++.++
T Consensus        95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~  133 (360)
T COG3437          95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL  133 (360)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             860587699999997247777528898899999999999


No 44 
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.92  E-value=7e-24  Score=157.95  Aligned_cols=104  Identities=23%  Similarity=0.485  Sum_probs=94.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9877899539989999999999978-98999-988979999999827998999950412969599999998285768995
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      |+-|||||||++..|+.++.+|+.. +++|. +|.||.+|++.+++++||+|++|++||+|||+|++++|++..   .+|
T Consensus         1 MkirVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~---p~p   77 (345)
T PRK00742          1 MKIRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALR---PTP   77 (345)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC---CCC
T ss_conf             98269999298899999999997289908999989999999998860999999837889998799999999758---987


Q ss_pred             EEEEEECCCH--HHHHHHHHCCCCEEEECCC
Q ss_conf             9999924998--9999999769988998798
Q gi|254780476|r   79 VIAVTAFAMK--GDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        79 ii~~t~~~~~--~~~~~~~~~g~~~~l~KPi  107 (123)
                      |||+|+....  ....++++.|+.+|+.||-
T Consensus        78 VimvSs~~~~~~~~~~~Al~~GA~D~i~KP~  108 (345)
T PRK00742         78 VVMVSSLTERGAEITLEALELGAVDFVPKPF  108 (345)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf             7999722555659999999759224895788


No 45 
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114   This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.92  E-value=3.3e-24  Score=159.79  Aligned_cols=117  Identities=23%  Similarity=0.383  Sum_probs=112.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             89953998999999999997898999988979999999827-99899995041296959999999828576899599999
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |+|||||...|-++..-|+..|+.|.+..|+..+++.+..+ .||+|+.|+.||++||++++.+||+.  ...+|||++|
T Consensus         1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~--~P~LPVIvM~   78 (471)
T TIGR01818         1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKR--HPKLPVIVMT   78 (471)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC--CCCCCEEEEC
T ss_conf             95776471899999999966695453113189999998447999879861226882489999999850--8999779871


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             2499899999997699889987989899999999974039
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a  123 (123)
                      +++.-.....+.+.|+-.||.|||+.++....+.|++.+.
T Consensus        79 A~~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~  118 (471)
T TIGR01818        79 AHSDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA  118 (471)
T ss_pred             CCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             3067899999973583021769876688999999861030


No 46 
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.92  E-value=1.9e-23  Score=155.52  Aligned_cols=121  Identities=21%  Similarity=0.453  Sum_probs=116.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      .+|||+|||+...++.++.+|...|+.+..+.+|.+|+..+.+.+||+|++|+.||++|||++|+++|+....+.+|||+
T Consensus       132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~  211 (435)
T COG3706         132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIIL  211 (435)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf             75089974807799999999875363366515989999997468985899955787667899999972444445663899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +|+.+......++++.|+++|+.||+...+|..++++.+.+
T Consensus       212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~  252 (435)
T COG3706         212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR  252 (435)
T ss_pred             EECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf             95266347899999768851673477879999999999985


No 47 
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.90  E-value=1.6e-22  Score=150.06  Aligned_cols=102  Identities=24%  Similarity=0.429  Sum_probs=91.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             77899539989999999999978-98999-98897999999982799899995041296959999999828576899599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      -|||||||++..|+.++++|+.. +++|. +|.||.+|++.+++.+||+|++|++||+|||+|++++|++..   .+|||
T Consensus         2 irVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~---p~PVi   78 (340)
T PRK12555          2 MNVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRR---PCPVL   78 (340)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC---CCCEE
T ss_conf             889999098899999999996099948999989999999998861999999727889998799999999878---99869


Q ss_pred             EEEECCCH--HHHHHHHHCCCCEEEECCC
Q ss_conf             99924998--9999999769988998798
Q gi|254780476|r   81 AVTAFAMK--GDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        81 ~~t~~~~~--~~~~~~~~~g~~~~l~KPi  107 (123)
                      |+|+....  ....++++.|+.+|+.||-
T Consensus        79 mvSs~~~~~~~~~~~AL~~GA~D~i~KP~  107 (340)
T PRK12555         79 IVSSLTEAGASITYEALGAGALDAVDKPK  107 (340)
T ss_pred             EEEECCCCCHHHHHHHHHCCHHHEEECCC
T ss_conf             98503565769999999779776684788


No 48 
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.89  E-value=8.1e-22  Score=146.09  Aligned_cols=116  Identities=18%  Similarity=0.348  Sum_probs=108.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             789953998999999999997898999-9889799999998279989999504129695999999982857689959999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      |||||||++..|+.++.+|+..++++. ++.+|.++++.+..++||++++|+.||+++|++++++||+.  ...+||+++
T Consensus         2 ~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~--~~~~~viv~   79 (204)
T PRK09958          2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGIIIIV   79 (204)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--CCCEEEEEE
T ss_conf             899986989999999999986899899997999999999874397999995899999841678889872--798059999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             924998999999976998899879898999999999740
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++.......++.+.|+++|+.|+...++|.++|+.+..
T Consensus        80 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~  118 (204)
T PRK09958         80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN  118 (204)
T ss_pred             ECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             724652114433526863799789999999999999977


No 49 
>PRK09483 response regulator; Provisional
Probab=99.89  E-value=1.7e-21  Score=144.26  Aligned_cols=118  Identities=24%  Similarity=0.431  Sum_probs=109.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |-|||||||++..|+.++.+|+.. ++++. ++.++.++++.++.++||++++|+.||+++|++++++|++..  ..+||
T Consensus         1 Mi~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~--p~~~v   78 (216)
T PRK09483          1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRST--PDVKI   78 (216)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC--CCCCE
T ss_conf             9589998499999999999997489958999989999999999855999999868898987523778887408--99857


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +++|++.......++++.|+++|+.|+..+++|.++|+.+..
T Consensus        79 ivls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~  120 (216)
T PRK09483         79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS  120 (216)
T ss_pred             EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             863056632889999974887899479999999999999985


No 50 
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.88  E-value=7.8e-22  Score=146.19  Aligned_cols=117  Identities=18%  Similarity=0.376  Sum_probs=108.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +-|||||||++..|+.++.+|+.. ++.+. +|.++.+|++.+..++||++++|+.||+++|++++++||+.  ...+||
T Consensus         6 pirVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~~pDlvllDl~lp~~~G~~~~~~l~~~--~~~~~i   83 (216)
T PRK10651          6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK--SLSGRI   83 (216)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC--CCCCCE
T ss_conf             978999839999999999999758993899998999999999870799999995999998887642323345--788746


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             99992499899999997699889987989899999999974
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      |++|++.......++++.|+++|+.||.++++|.++|+.+.
T Consensus        84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~  124 (216)
T PRK10651         84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAA  124 (216)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             76305541889999996698789837899999999999998


No 51 
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.88  E-value=1.6e-21  Score=144.40  Aligned_cols=118  Identities=25%  Similarity=0.439  Sum_probs=108.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             87789953998999999999997-898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +-||+||||++..|+.++.+|+. .++++. ++.++.++++.+..++||++++|+.||+++|+++++.||+..  ..+||
T Consensus         6 pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~--p~~~i   83 (215)
T PRK10403          6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDG--VTAQI   83 (215)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC--CCCCE
T ss_conf             7579998398999999999997589928999989999999998644998999808998998741233565418--87736


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +++|++..+....++++.|+++|+.||.++++|+++|+++..
T Consensus        84 ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~  125 (215)
T PRK10403         84 IILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAK  125 (215)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             886324323678998746876688489999999999999984


No 52 
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.86  E-value=1.1e-20  Score=139.70  Aligned_cols=116  Identities=22%  Similarity=0.431  Sum_probs=107.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             789953998999999999997-898999-988979999999827998999950412969599999998285768995999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      +|||||||+...++-+++++. .||.+. +|.++++|..++.+..||+|++|..||+.+|+++++.+|+..  ..+-||+
T Consensus         2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~DVI~   79 (224)
T COG4565           2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQH--YPVDVIV   79 (224)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCC--CCCCEEE
T ss_conf             28997086589999999997389953898606499999999840899799960267985077999998468--9978899


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             9924998999999976998899879898999999999740
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +|+.+.......++..|+.|||.|||..++|-+++.++..
T Consensus        80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~  119 (224)
T COG4565          80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ  119 (224)
T ss_pred             EECCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHHH
T ss_conf             9534437899999965823220563409999999999999


No 53 
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.86  E-value=5.8e-21  Score=141.19  Aligned_cols=119  Identities=22%  Similarity=0.374  Sum_probs=111.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ..-|-|||||...|+.+..+|+..||.+.+.+|+++.+.......|.|+++|+.||+++|.|+-+++++..  ..+|||+
T Consensus         4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PVIf   81 (202)
T COG4566           4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVIF   81 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf             87689976848899999999983895366504799998306678897699855788885089999999539--9988799


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             99249989999999769988998798989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      +||++.-....++++.|+.|||.||++-+.|++++++++..
T Consensus        82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~  122 (202)
T COG4566          82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR  122 (202)
T ss_pred             EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             82788728999999742156774788548999999999998


No 54 
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.86  E-value=2.2e-20  Score=137.84  Aligned_cols=118  Identities=17%  Similarity=0.297  Sum_probs=109.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +-|||||||++..|+.++.+|+.. ++++. .++++.++++.++.++||++++|+.||+++|+++++.|++..  ..+||
T Consensus         3 p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~--p~~~i   80 (210)
T PRK09935          3 PASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQ--ETVKV   80 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHC--CCCCE
T ss_conf             7889998596999999999996298928999989999999999747999999889999988640567898738--99708


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +++|++.......++++.|+++|+.|+.+.++|.++++.++.
T Consensus        81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~  122 (210)
T PRK09935         81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS  122 (210)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             997176729999999966877688678999999999999985


No 55 
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.86  E-value=3.1e-20  Score=136.98  Aligned_cols=115  Identities=21%  Similarity=0.299  Sum_probs=106.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             87789953998999999999997-898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET-SGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |-||+||||++..|+-++.+|+. .++++. +++|+.++++.+.+++||++++|+.||+++|++++++++.     .+|+
T Consensus         1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~-----~~~v   75 (196)
T PRK10360          1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK-----GMAT   75 (196)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC-----CCCE
T ss_conf             91999987979999999999812999599999899999999887449999998788788620779999843-----8748


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++|++.......++.+.|+++|+.|+..+++|.++|+.+..
T Consensus        76 ivls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~  117 (196)
T PRK10360         76 IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT  117 (196)
T ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             999730759999999975998899778999999999999986


No 56 
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85  E-value=6.1e-20  Score=135.32  Aligned_cols=116  Identities=33%  Similarity=0.500  Sum_probs=107.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             78995399899999999999789-8999-988979999999827998999950412969599999998285768995999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSG-YIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g-~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ||++|||.+..|..++.+|+..+ +++. ++.+|.++++.+...+||++++|+.||+++|+++++.||+  ...+++|++
T Consensus         2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~--~~p~~~vvv   79 (211)
T COG2197           2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRA--RGPDIKVVV   79 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH--HCCCCEEEE
T ss_conf             499980977799999999986899669998278899999851379988998378899875999999998--689972999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             9924998999999976998899879898999999999740
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +|++..+....++++.|+++|+.|+.+++.+.++|+.+..
T Consensus        80 lt~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~  119 (211)
T COG2197          80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAA  119 (211)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             9677898999999977996998679999999999999975


No 57 
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.84  E-value=2e-19  Score=132.32  Aligned_cols=119  Identities=33%  Similarity=0.657  Sum_probs=107.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             987789953998999999999997898999988979-999999827-998999950412969599999998285768995
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGM-EALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~-eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      +..+||+|||++..+..++..|..+|+.+..+.+|. +|++.++.+ .||+|++|+.||++||+++++++|+.  .+.+|
T Consensus         4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~~p   81 (130)
T COG0784           4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR--GPNIP   81 (130)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCC
T ss_conf             8888999789999999999999877978999578399999998627899999980688788889999999971--89996


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHH
Q ss_conf             999992499899999997699889987989899-9999999740
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSI-FMETIKKYIG  121 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~-L~~~i~~~l~  121 (123)
                      ++++|++........+.+.|+++|+.||+.... |...+.+++.
T Consensus        82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~  125 (130)
T COG0784          82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA  125 (130)
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf             89998678676599999768768975899879999999999986


No 58 
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.84  E-value=2e-19  Score=132.38  Aligned_cols=116  Identities=14%  Similarity=0.238  Sum_probs=105.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             7789953998999999999997898999988979999999827--99899995041296959999999828576899599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~--~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      .+||+|||++..++....+|+..||+|.++.||.+|++.++++  .+|++++| .||.++|.++.+.++...  ..+|||
T Consensus       700 e~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~--p~lpVi  776 (831)
T PRK13837        700 ETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAA--PTLPII  776 (831)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHC--CCCEEE
T ss_conf             77999859889999999999967996888689999999998389985399988-999998799999998618--997499


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             999249989999999769988998798989999999997403
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      + |++............|...||.|||+.++|..+|+++|+.
T Consensus       777 l-sg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~  817 (831)
T PRK13837        777 L-AGSSLKMAAREALATAIAEILPKPISSRTLAYALRTALAT  817 (831)
T ss_pred             E-ECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             9-7688144331102226670650999999999999999848


No 59 
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.83  E-value=3.7e-19  Score=130.83  Aligned_cols=117  Identities=14%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHCCCCCCC
Q ss_conf             77899539989999999999978-98999-9889799999998279989999504129---6959999999828576899
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQE---ISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~---~dG~el~~~ir~~~~~~~i   77 (123)
                      =||+||||++..|+-++.+|+.. ++++. ++.+|.++++.+...+||++++|+.||+   +||+++++.+|+.  ...+
T Consensus         4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~--~p~~   81 (216)
T PRK10840          4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH--FPSL   81 (216)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf             88999889799999999998159996899987999999999862398989982677999887899999999985--8998


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             59999924998999999976998899879898999999999740
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +|+++|++..+....+++++|+++|+.|--.+++|.++|+.+..
T Consensus        82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~  125 (216)
T PRK10840         82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK  125 (216)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             08998477878999999858974899878999999999999987


No 60 
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.83  E-value=3.6e-19  Score=130.85  Aligned_cols=115  Identities=30%  Similarity=0.437  Sum_probs=99.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCC-E-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             87789953998999999999997898-9-999889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGY-I-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~-~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |-||+|+||++..|+.++.+++..+. + +.++++|.+|++.+..++||++++|++||++||+|+++.++..   ...+|
T Consensus         1 M~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~~---~~~~i   77 (239)
T PRK11697          1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGMLDPE---HMPYI   77 (239)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC---CCCEE
T ss_conf             949999969999999999999758798999998999999999985399999983998695999999983733---49869


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++|++  .+...++.+.++.+||.||++.++|..++.++..
T Consensus        78 IFvT~~--~e~a~~af~~~a~dYllKP~~~e~l~~~l~r~~~  117 (239)
T PRK11697         78 VFVTAF--DEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ  117 (239)
T ss_pred             EEEECC--HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             999586--8999999730972665389999999999999999


No 61 
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.80  E-value=4.5e-19  Score=130.35  Aligned_cols=114  Identities=24%  Similarity=0.457  Sum_probs=103.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      -||+||||+......+..+|+..|..+.++++..+|+..+..+.||+|++|+.||+|+|+|+++++|+..  +.+|||++
T Consensus         1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~iifI   78 (361)
T COG3947           1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPIIFI   78 (361)
T ss_pred             CCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHH--CCCCEEEE
T ss_conf             9279984638999999999986110210068878899999843887799985237860878999998753--14868999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             92499899999997699889987989899999999974
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      |++....+  ...+....+|+.||++++.|-.+|.+..
T Consensus        79 ssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~  114 (361)
T COG3947          79 SSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRL  114 (361)
T ss_pred             ECCHHHHH--HHCCCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             63056523--2035566754168888889999999874


No 62 
>PRK09191 two-component response regulator; Provisional
Probab=99.80  E-value=8.9e-19  Score=128.63  Aligned_cols=115  Identities=27%  Similarity=0.408  Sum_probs=98.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf             987789953998999999999997898999-9889799999998279989999504129-69599999998285768995
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ip   78 (123)
                      +..|||||||++....-++.+++..||+|. .|.++.+|++++++++||++++|++|++ +||++.++.|++.   .++|
T Consensus       136 ~~~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~---~~iP  212 (261)
T PRK09191        136 VATSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKT---FDVP  212 (261)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH---CCCC
T ss_conf             4788799858599999999999987996787627899999997425989899953479998799999999982---8999


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             999992499899999997699889987989899999999974
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      +|++|++...-..-+.  .....+++|||+++.+...|.+++
T Consensus       213 vIFiTAyperlltg~~--~ep~~li~KPf~~~~v~aai~qAl  252 (261)
T PRK09191        213 VIFITAFPERLLTGER--PEPAFLITKPFQPDTVKAAISQAL  252 (261)
T ss_pred             EEEECCCHHHHCCCCC--CCCCEEECCCCCHHHHHHHHHHHH
T ss_conf             8997778465302788--887403569898899999999999


No 63 
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.74  E-value=6.6e-17  Score=117.88  Aligned_cols=104  Identities=29%  Similarity=0.515  Sum_probs=92.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             8778995399899999999999789--89999889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +-|||+|||+...|+.++++|...|  ..+-++.||.+|++.+.+..||+|.+|++||.|||+++++.|-+.   ..+||
T Consensus         1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~---~p~pV   77 (350)
T COG2201           1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL---RPLPV   77 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC---CCCCE
T ss_conf             947999858199999999998308973799733787999999972299789972566445479999998447---99868


Q ss_pred             EEEEECCCHH--HHHHHHHCCCCEEEECCCC
Q ss_conf             9999249989--9999997699889987989
Q gi|254780476|r   80 IAVTAFAMKG--DEERIRKGGCEAYISKPIS  108 (123)
Q Consensus        80 i~~t~~~~~~--~~~~~~~~g~~~~l~KPi~  108 (123)
                      ||+|+-..++  ...++++.|+.+|+.||-.
T Consensus        78 imvsslt~~g~~~t~~al~~gAvD~i~kp~~  108 (350)
T COG2201          78 IMVSSLTEEGAEATLEALELGAVDFIAKPSG  108 (350)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf             9995145213799999984574213217876


No 64 
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264   Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system  common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.73  E-value=3.8e-17  Score=119.27  Aligned_cols=114  Identities=22%  Similarity=0.315  Sum_probs=102.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC-CCC----HHHHHHHHHHCCCCCCCCE
Q ss_conf             89953998999999999997898999988979999999827998999950412-969----5999999982857689959
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EIS----GLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp-~~d----G~el~~~ir~~~~~~~ipi   79 (123)
                      +||||||+-.++.++=-|. .+|++..|.+-++|+..++.|.|.+|.||+.|| +.|    |+..+++|=+..  .+++|
T Consensus         1 LLiVeDD~glQKQLkWs~G-~~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~--P~TKV   77 (451)
T TIGR02915         1 LLIVEDDLGLQKQLKWSFG-ADYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDTKV   77 (451)
T ss_pred             CCEEECCHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEE
T ss_conf             9245368665678764157-88403553475789998605699647736755789887458999999999638--98048


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++||.+......++.++|+=||..|||+++.|--+|+|++.
T Consensus        78 IViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~  119 (451)
T TIGR02915        78 IVITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFR  119 (451)
T ss_pred             EEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             998668983889999643751013578757899999999888


No 65 
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.69  E-value=6e-16  Score=112.35  Aligned_cols=115  Identities=21%  Similarity=0.403  Sum_probs=108.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      |..|+||||....+.+.+-++.-||.|.+|.+.+||+..++..+|...++|+.|.+.+|+++.+.||+..  .+..||++
T Consensus        10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~--~d~rivvL   87 (182)
T COG4567          10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERR--ADMRIVVL   87 (182)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCC--CCCEEEEE
T ss_conf             6058961876999999999860686257614499999998517985288986406887468999998249--76438988


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             9249989999999769988998798989999999997
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
                      ||+++-....++.+.|+.+||.||-+.+..+.++.+-
T Consensus        88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~  124 (182)
T COG4567          88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLRR  124 (182)
T ss_pred             ECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf             4511799999999862455407977768999998602


No 66 
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.67  E-value=2e-15  Score=109.38  Aligned_cols=116  Identities=8%  Similarity=0.020  Sum_probs=101.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ..|+|+++|....+..+...++..=-.+..+.++.++++.+  .+||+|++|+.||+++|++.++++.+. ...+++|++
T Consensus        10 g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~-~~p~~kVli   86 (216)
T PRK10100         10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSR-KNNNIKILL   86 (216)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf             83899955842999999998898764763024776677644--799989984887883089999999972-599977999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             992499899999997699889987989899999999974
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      +|.++.......+...|+++|+.|-.++++|.+.|+.+.
T Consensus        87 LTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~  125 (216)
T PRK10100         87 LNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVL  125 (216)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             968874899999976587667668999999999999998


No 67 
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.62  E-value=1.2e-15  Score=110.62  Aligned_cols=114  Identities=14%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      -||.|+|+|-.-.+-..+=....|.|..+.+...|++.+....+|||+.|+.||++||++|++++|+  ....+|+|++|
T Consensus        19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~t   96 (674)
T PRK13558         19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVVP   96 (674)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEEE
T ss_conf             9999468887775234566677421276323888986531589876996565788867999999861--38999889995


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             24998999999976998899879898999999999740
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      +...+....+++.+|+.+|+.|  ..+..+..+...+.
T Consensus        97 ~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~  132 (674)
T PRK13558         97 TAVDEDVARRAVDADATGLVPA--VSEDATAAIADRIE  132 (674)
T ss_pred             CCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf             6785899999875163643344--71768999999999


No 68 
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.61  E-value=1.1e-14  Score=105.22  Aligned_cols=116  Identities=28%  Similarity=0.456  Sum_probs=100.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             987789953998999999999997898999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |.-|+|++||++.++..+...|...||.+. ++.+|.++......++||+|++|+.+|..|  ...+ +.........||
T Consensus         4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd--~~e~-~~~~~~~~~~pi   80 (194)
T COG3707           4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRD--IIEA-LLLASENVARPI   80 (194)
T ss_pred             CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCC--HHHH-HHHHHCCCCCCE
T ss_conf             6653034241135556789899875973876541344750677852998799966787732--8999-898605899878


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             9999249989999999769988998798989999999997
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
                      |++|+++.++..+++.++|+.+|+.||+++..|+..+.-+
T Consensus        81 v~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA  120 (194)
T COG3707          81 VALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA  120 (194)
T ss_pred             EEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             9997167858999999738749883476542104799999


No 69 
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.47  E-value=1.1e-12  Score=93.68  Aligned_cols=106  Identities=8%  Similarity=0.027  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHCCC-----EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             9999999997898-----999-9889799999998279989999504129695999999982857689959999924998
Q gi|254780476|r   15 MKLFRDLIETSGY-----IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        15 ~~~l~~~l~~~g~-----~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      ..-++.+|+....     ++. ++++|.||+..+....||++++|+.||++||++++++|++  .+.+++||++|.++.+
T Consensus         3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r--~~P~vriLVLTm~d~e   80 (205)
T PRK11475          3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAI--KFPRMRRLVIADDDIE   80 (205)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHH--HCCCCEEEEEECCCCH
T ss_conf             78899998418998348999505456999986288666438985389999766999999999--7899718999747687


Q ss_pred             HHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             9999999-769988998798989999999997403
Q gi|254780476|r   89 GDEERIR-KGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        89 ~~~~~~~-~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ....+++ ..|+.+|+.|....++|.+.+..+++.
T Consensus        81 ~~v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g  115 (205)
T PRK11475         81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG  115 (205)
T ss_pred             HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             99999999841668885678899999999998706


No 70 
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.37  E-value=4.5e-12  Score=90.11  Aligned_cols=115  Identities=26%  Similarity=0.423  Sum_probs=95.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978-98999-9889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETS-GYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~-g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |-+|+++||++..++-+..++..+ ..++. ++.++.++++.++...||++++|+.||+++|+++++.|+..  ....+|
T Consensus         1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~--~~~~~I   78 (244)
T COG3279           1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKG--DPRPAI   78 (244)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC--CCCCEE
T ss_conf             985177147676799999998874421111331230317888760257769997237652449999986156--988539


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             99992499899999997699889987989899999999974
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      +++|+++....  .+.+..+-+|+.||++.+.+-..+.+..
T Consensus        79 vfvt~~~~~a~--~afev~a~d~i~kp~~~~~l~~~l~~~~  117 (244)
T COG3279          79 VFVTAHDEYAV--AAFEVEALDYLLKPISEERLAKTLERLR  117 (244)
T ss_pred             EEEEEHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99986154323--3313346677428542689999999988


No 71 
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.31  E-value=1.1e-10  Score=82.03  Aligned_cols=116  Identities=14%  Similarity=0.280  Sum_probs=103.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             77899539989999999999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .+|++|||+....+.+...+... +.+....++.+++....+..||++++|..|+..+|++++..+|+....+.+|++.+
T Consensus       156 ~~il~v~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~  234 (457)
T PRK09581        156 GRILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLL  234 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHH-CCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             61999879679999999997533-24688548699998743579768997565676646899999971434357329999


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             9249989999999769988998798989999999997
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
                      +.........++.+.|+++|+.+|++..++...+...
T Consensus       235 ~~~~~~~~~~~~~~~g~~d~~~~~~~~~e~~~r~~~~  271 (457)
T PRK09581        235 VDEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQ  271 (457)
T ss_pred             ECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             5688616676664146522884378627555879999


No 72 
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.28  E-value=1.1e-10  Score=82.08  Aligned_cols=112  Identities=15%  Similarity=0.178  Sum_probs=95.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      .++||++|+|+..++.+..+|..||+.+..+.+..+.    ...+||++++|+.||.++|.+.............-++++
T Consensus       536 g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il  611 (920)
T PRK11107        536 GKRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQL----PEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLIL  611 (920)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHH----HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             8769997697789999999999749645751788775----136888799616666654066789998630035784699


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             992499899999997699889987989899999999
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      ++............+.|++.++.||++...|+..+.
T Consensus       612 ~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~  647 (920)
T PRK11107        612 ALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALL  647 (920)
T ss_pred             EECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHH
T ss_conf             715643455788764253021127776889999872


No 73 
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.22  E-value=1.7e-11  Score=86.80  Aligned_cols=92  Identities=24%  Similarity=0.432  Sum_probs=83.3

Q ss_pred             CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             89899998897999999982799899995041296959999999828576899599999249989999999769988998
Q gi|254780476|r   25 SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        25 ~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      .-++|.+|.+|.+|+..+..++||.+++|++||+++||++++.+++++..    ++++|......+..+..++|++.|++
T Consensus        11 ~~~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~~----~v~~t~~~~~~~~~~~~~~~~~~~l~   86 (435)
T COG3706          11 EYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRGLKAGADDFLT   86 (435)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCCCC----EEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf             55546342542779999744898748741006886730199876358751----69986037877755677631344136


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             7989899999999974
Q gi|254780476|r  105 KPISLSIFMETIKKYI  120 (123)
Q Consensus       105 KPi~~~~L~~~i~~~l  120 (123)
                      ||++...+....+...
T Consensus        87 ~~~~~~~~~~r~~~l~  102 (435)
T COG3706          87 KPVNDSQLFLRAKSLV  102 (435)
T ss_pred             CCCCHHHHHHHHHHHC
T ss_conf             7777177887526631


No 74 
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=99.14  E-value=2.3e-10  Score=80.33  Aligned_cols=55  Identities=36%  Similarity=0.710  Sum_probs=53.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             7789953998999999999997898999988979999999827998999950412
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ   57 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp   57 (123)
                      .|||+|||++..++.++.+|+..||++.++++|.+|++.+.++.||++++|+.||
T Consensus         1 ~kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~D~~mP   55 (55)
T smart00448        1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP   55 (55)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             9899993799999999999997899999988999999999749999999967687


No 75 
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.60  E-value=1.3e-06  Score=58.74  Aligned_cols=107  Identities=8%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      ||||||||+..|.-+..+|+=.|.++..+++++-..........-++++...++  +..++++.+.+  ....+|+++++
T Consensus         1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~--~~p~~Pvlllg   76 (109)
T pfam06490         1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAK--WDPHLPVLLLG   76 (109)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHH--HCCCCCEEEEC
T ss_conf             989986888999979999986499649954889889886378852999967852--09999999996--48899999987


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             249989999999769988998798989999999997
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
                      .......     ...+-+-+.+|++-..|.+.+.+.
T Consensus        77 ~~~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~c  107 (109)
T pfam06490        77 EHDSAAE-----LANVIGELEEPLNYPQLTDLLHRC  107 (109)
T ss_pred             CCCCHHH-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             8875212-----055258707889879999999875


No 76 
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.24  E-value=0.0074  Score=37.17  Aligned_cols=94  Identities=20%  Similarity=0.315  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCC-H-HHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             89999999999978989999---88979999999827998999950412969-5-9999999828576899599999249
Q gi|254780476|r   12 ELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQEIS-G-LEITKQIKEDSELQEIPVIAVTAFA   86 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~~d-G-~el~~~ir~~~~~~~ipii~~t~~~   86 (123)
                      ..=..++..+|+..||+|.-   -.+.++.++.+.++.||+|.+...|+..- . -++.+.+|+.. ..++|| ++-+..
T Consensus        13 ~iG~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~g-~~~i~v-~vGG~~   90 (119)
T cd02067          13 DIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG-LDDIPV-LVGGAI   90 (119)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCEE-EEECCC
T ss_conf             789999999999789989989999999999999997099999996220242689999999999769-999859-998998


Q ss_pred             CHHHHHHHHHCCCCEEEECCC
Q ss_conf             989999999769988998798
Q gi|254780476|r   87 MKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        87 ~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      ...+...+.+.|++.|..-.-
T Consensus        91 ~~~~~~~~~~~Gad~~~~~a~  111 (119)
T cd02067          91 VTRDFKFLKEIGVDAYFGPAT  111 (119)
T ss_pred             CCHHHHHHHHCCCCEEECCHH
T ss_conf             974399999869979977807


No 77 
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112   This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=97.03  E-value=0.0031  Score=39.31  Aligned_cols=100  Identities=19%  Similarity=0.394  Sum_probs=75.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             877899539989999999999978989999889799999998279989999504129-6959999999828576899599
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii   80 (123)
                      .|+||+||-+......+.++|...|-.|.+...+ -|-.++.+.+||||+|.=. |+ =.-|++...|++.- .+++||.
T Consensus       524 G~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~-~ae~~fd~~rPDLVVLSPG-PGrP~dFdv~~Ti~aa~-ar~lP~F  600 (726)
T TIGR01815       524 GKRILLVDHEDSFVHTLANYLRQTGASVTTLRHS-FAEELFDEERPDLVVLSPG-PGRPKDFDVKETIKAAL-ARDLPVF  600 (726)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCH-HHHHHHHCCCCCEEEECCC-CCCCCCCCHHHHHHHHH-HCCCCEE
T ss_conf             8779998547543777788876348755304304-7899973279988986873-12387544788999999-7289857


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             999249989999999769988998798
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      .+= -...+..+..  -|.=+.|..|+
T Consensus       601 GVC-LGLQg~vEaf--GG~L~vL~~P~  624 (726)
T TIGR01815       601 GVC-LGLQGLVEAF--GGELDVLAIPV  624 (726)
T ss_pred             EEH-HHHHHHHHHH--CCCCCCCCCCC
T ss_conf             741-3468999874--67213578887


No 78 
>PRK13566 anthranilate synthase; Provisional
Probab=96.97  E-value=0.003  Score=39.38  Aligned_cols=78  Identities=17%  Similarity=0.271  Sum_probs=60.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE--ECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             87789953998999999999997898999988979999999827998999950--4129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI--QLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~--~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      .+|||+||........+.++|...|.+|.+..++ .+.+.+....||+|++.=  .-|..-|..  ..|.... .+++||
T Consensus       523 g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d-~~~~~l~~~~pD~vvlSPGPG~P~d~g~~--~~i~~~~-~~~iPi  598 (724)
T PRK13566        523 GKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP-VAEEILDRVNPDLVVLSPGPGRPEDFDCK--ATIDAAL-ARNLPI  598 (724)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC-CCHHHHHHHCCCEEEECCCCCCCHHCCCH--HHHHHHH-HCCCCE
T ss_conf             7579998465327999999999819879998189-87677763188989987999790005585--9999998-579987


Q ss_pred             EEEE
Q ss_conf             9999
Q gi|254780476|r   80 IAVT   83 (123)
Q Consensus        80 i~~t   83 (123)
                      +.+-
T Consensus       599 lGVC  602 (724)
T PRK13566        599 FGVC  602 (724)
T ss_pred             EEEC
T ss_conf             9977


No 79 
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=96.61  E-value=0.028  Score=33.84  Aligned_cols=66  Identities=11%  Similarity=0.247  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             9999999997898999988979999999827-9989999504129695999999982857689959999924
Q gi|254780476|r   15 MKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      .+-+..-|+..|++|..+.+..+++..++.+ ...++++|+   +....++++.||...  .++||.+++..
T Consensus         6 ~~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~---~~~~~~ll~~ir~~n--~~lPvFl~~~~   72 (111)
T pfam03709         6 SRELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSW---DDEARGLLDEIRRRN--FDLPVFLLAET   72 (111)
T ss_pred             HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE---CHHHHHHHHHHHHHC--CCCCEEEEECH
T ss_conf             89999999978988997487899999998387876899984---606899999999747--89998988441


No 80 
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.35  E-value=0.087  Score=31.01  Aligned_cols=109  Identities=13%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             3998999999999997898999---988979999999827998999950412969--59999999828576899599999
Q gi|254780476|r    9 EDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         9 DD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |-...-..++...|+..||+|.   ...+.++..+.+.++.+|+|.+....-...  .-++.+.+|+. ..+++|+++=-
T Consensus        10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~-G~~di~vvvGG   88 (128)
T cd02072          10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA-GLKDILLYVGG   88 (128)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCCCCEEEECC
T ss_conf             65378899999999978972984798899999999998739999998232025624899999999967-99999899789


Q ss_pred             -----ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             -----24998999999976998899879898999999999
Q gi|254780476|r   84 -----AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        84 -----~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                           ..+.++.+....++|++..+...-++++..+.+++
T Consensus        89 ~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~k  128 (128)
T cd02072          89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLKK  128 (128)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHC
T ss_conf             8677831048999999966968574998799999999859


No 81 
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.25  E-value=0.017  Score=35.06  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH--HHHHCCCCCCCCE
Q ss_conf             87789953998999999999997898999988979999999827998999950412969599999--9982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK--QIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~--~ir~~~~~~~ipi   79 (123)
                      .|+.+.||-|....++..++|...+.+|.--.+    +..+-.+.||.+++.+--+..+-..+-+  -.|...-. +--|
T Consensus        11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mt-d~vi   85 (140)
T COG4999          11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAHYDMMLLGVAVTFRENLTMQHERLAKALSMT-DFVI   85 (140)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCCCHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCEE
T ss_conf             664577668608999999998468826884233----10027445203465366655688038899999998653-1367


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             99992499899999997699889987989899999999
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      +.+- +......++..+-|+.+.+.||++..+|+-.+-
T Consensus        86 lalP-s~~qv~AeqLkQ~g~~~CllKPls~~rLlptll  122 (140)
T COG4999          86 LALP-SHAQVNAEQLKQDGAGACLLKPLSSTRLLPTLL  122 (140)
T ss_pred             EECC-CHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
T ss_conf             7367-288875999963142867407650656678998


No 82 
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.20  E-value=0.11  Score=30.53  Aligned_cols=117  Identities=13%  Similarity=0.204  Sum_probs=84.1

Q ss_pred             CEEEEE----CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH----HHHHHC
Q ss_conf             778995----39989999999999978989999---8897999999982799899995041296959999----999828
Q gi|254780476|r    3 KKVMIV----EDNELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQEISGLEIT----KQIKED   71 (123)
Q Consensus         3 kkiLiV----DD~~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~----~~ir~~   71 (123)
                      .||++.    |-...-.+++...|+..||+|.-   ..+.++..+.+.++..|+|.+...- + .+..++    +.+++.
T Consensus         4 ~~vvi~~~g~D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~-G-~~~~~~~~l~~~l~~~   81 (137)
T PRK02261          4 PTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLY-G-HGEIDCRGLREKCIEA   81 (137)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCC-C-CCCHHHHHHHHHHHHC
T ss_conf             8799982188611788999999999789749846887999999999987399999971111-2-6612799999999967


Q ss_pred             CCCCCCCEEEE-----EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             57689959999-----9249989999999769988998798989999999997403
Q gi|254780476|r   72 SELQEIPVIAV-----TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        72 ~~~~~ipii~~-----t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                       ...++|+++=     +....+.+..+..++|++..+...-++++..+.+++.+..
T Consensus        82 -g~~di~vvvGG~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~~  136 (137)
T PRK02261         82 -GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLNA  136 (137)
T ss_pred             -CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC
T ss_conf             -9999969983621678878399999999779798879788999999999998633


No 83 
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=95.82  E-value=0.16  Score=29.50  Aligned_cols=100  Identities=20%  Similarity=0.380  Sum_probs=68.6

Q ss_pred             EEEEE----CCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECCCC-CH-HHHHHHHHHCCCC
Q ss_conf             78995----39989999999999978989999--8-897999999982799899995041296-95-9999999828576
Q gi|254780476|r    4 KVMIV----EDNELNMKLFRDLIETSGYIALQ--T-RNGMEALELARQHKPDVIIMDIQLQEI-SG-LEITKQIKEDSEL   74 (123)
Q Consensus         4 kiLiV----DD~~~~~~~l~~~l~~~g~~v~~--a-~~g~eal~~l~~~~~dlillD~~mp~~-dG-~el~~~ir~~~~~   74 (123)
                      ||++.    |-...=..++..+|+..||+|.-  + ...++.++.++++.||+|-+...|+.- .. -++.+.+|+....
T Consensus        84 ~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~~~~~i~~lr~~~~~  163 (201)
T cd02070          84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR  163 (201)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             59996279877389999999999878977997789999799999999729899999625668899999999999972898


Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf             89959999924998999999976998899879
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKP  106 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP  106 (123)
                      .++||++ -|....  ..-+...|++.|-.-+
T Consensus       164 ~~v~i~v-GG~a~~--~~~a~~~GAD~~a~da  192 (201)
T cd02070         164 DKVKVMV-GGAPVN--QEFADEIGADGYAEDA  192 (201)
T ss_pred             CCCEEEE-ECCCCC--HHHHHHHCCCEECCCH
T ss_conf             8985999-880179--9999992988784799


No 84 
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.82  E-value=0.16  Score=29.48  Aligned_cols=112  Identities=13%  Similarity=0.227  Sum_probs=79.6

Q ss_pred             ECCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCC-C-CHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             53998999999999997898999---9889799999998279989999504129-6-95999999982857689959999
Q gi|254780476|r    8 VEDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQE-I-SGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         8 VDD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~-~-dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      -|-...-.+++.+.|.+.||+|.   ...+++|+.+.+.++..|+|.+...=-+ . ..-++.+.+|+. ...++. ++.
T Consensus        22 lDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~-G~~~i~-v~~   99 (143)
T COG2185          22 LDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREA-GVEDIL-VVV   99 (143)
T ss_pred             CCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHH-CCCCEE-EEE
T ss_conf             654431319999999857937981587589999999998647988999734404789999999999981-975548-865


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             924998999999976998899879898999999999740
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      -+.--.++..+..+.|++.++.--....+.++.+...++
T Consensus       100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~  138 (143)
T COG2185         100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG  138 (143)
T ss_pred             CCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             686681367999981866546899989999999999987


No 85 
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=95.38  E-value=0.095  Score=30.78  Aligned_cols=77  Identities=13%  Similarity=0.297  Sum_probs=58.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEEEEE--CCCCCHH--HHHHHHHHCCCC
Q ss_conf             8778995399899999999999789899998897---99999998279989999504--1296959--999999828576
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQHKPDVIIMDIQ--LQEISGL--EITKQIKEDSEL   74 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g---~eal~~l~~~~~dlillD~~--mp~~dG~--el~~~ir~~~~~   74 (123)
                      |+|||+||+-...---+.++|...|..+....+-   ...++.+....|+.|++.=.  -|...|.  ++.++++     
T Consensus         1 M~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~~~~ii~~~~-----   75 (531)
T PRK09522          1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLR-----   75 (531)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCCHHHHHHHHC-----
T ss_conf             970999828886288999999866995699969983130199997249596998999989023657399999865-----


Q ss_pred             CCCCEEEEE
Q ss_conf             899599999
Q gi|254780476|r   75 QEIPVIAVT   83 (123)
Q Consensus        75 ~~ipii~~t   83 (123)
                      .++||+-+-
T Consensus        76 ~~iPILGIC   84 (531)
T PRK09522         76 GKLPIIGIC   84 (531)
T ss_pred             CCCCEEEEC
T ss_conf             999989987


No 86 
>PRK05637 anthranilate synthase component II; Provisional
Probab=95.28  E-value=0.039  Score=33.01  Aligned_cols=78  Identities=18%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978989999889799999998279989999504--129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      |+|||+||.-...-.-+.+++...|+.+....+. ..++.+....||.|++.=.  -|...|. ....++...  .++||
T Consensus         1 M~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~-~~~~~~~~~~pd~ivlSPGPg~P~d~g~-~~~~~~~~~--~~iPI   76 (208)
T PRK05637          1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVETILAANPDLICLSPGPGYPADAGN-MMALIERTL--GQIPL   76 (208)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHHH--CCCCE
T ss_conf             9779999488975999999998679907999699-9999998519995999999999577757-499999973--56982


Q ss_pred             EEEE
Q ss_conf             9999
Q gi|254780476|r   80 IAVT   83 (123)
Q Consensus        80 i~~t   83 (123)
                      +.+=
T Consensus        77 LGIC   80 (208)
T PRK05637         77 LGIC   80 (208)
T ss_pred             EEHH
T ss_conf             2114


No 87 
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.25  E-value=0.26  Score=28.30  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=76.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCC-CC-HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             39989999999999978989999---889799999998279989999504129-69-59999999828576899599999
Q gi|254780476|r    9 EDNELNMKLFRDLIETSGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQE-IS-GLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         9 DD~~~~~~~l~~~l~~~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~-~d-G~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |-...-.+++...|+..||+|.-   -.+.++..+.+.++.+|+|-+...+-. +. --++.+.+++.. ..++||+ .-
T Consensus        10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G-~~di~v~-vG   87 (122)
T cd02071          10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELG-AGDILVV-GG   87 (122)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCCEEE-EE
T ss_conf             622877999999999789769967998899999999997399899996465544789999999999769-9984699-94


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             2499899999997699889987989899999999
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      +.--+.+.....++|++..+..--++++..+.++
T Consensus        88 G~Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i~  121 (122)
T cd02071          88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR  121 (122)
T ss_pred             CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             5649899999997799889895889999999975


No 88 
>PRK07206 hypothetical protein; Provisional
Probab=94.54  E-value=0.4  Score=27.18  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-------------------------HHHHHHHHHCCCCEEEEEE-
Q ss_conf             98778995399899999999999789899998897-------------------------9999999827998999950-
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNG-------------------------MEALELARQHKPDVIIMDI-   54 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g-------------------------~eal~~l~~~~~dlillD~-   54 (123)
                      |+|+|+|||--.+-+ .+..-+...||.+..+.|.                         .+.++.++...|+.|+--. 
T Consensus         1 ~~~~vviVDp~StG~-~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~aVi~g~E   79 (415)
T PRK07206          1 MMKKVVIVDPFSSGK-FLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQLGPDAVIAGAE   79 (415)
T ss_pred             CCCEEEEECCCCCHH-HHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCH
T ss_conf             985599986765187-9999999739828999837988435442324343433210578999999998629729997855


Q ss_pred             -------------ECCCCCHHHHHHHHH------HCCCCCCCCEEEEEECCCHHHHHHHHH-CCCC--EEEECCCC----
Q ss_conf             -------------412969599999998------285768995999992499899999997-6998--89987989----
Q gi|254780476|r   55 -------------QLQEISGLEITKQIK------EDSELQEIPVIAVTAFAMKGDEERIRK-GGCE--AYISKPIS----  108 (123)
Q Consensus        55 -------------~mp~~dG~el~~~ir------~~~~~~~ipii~~t~~~~~~~~~~~~~-~g~~--~~l~KPi~----  108 (123)
                                   .+|.-|+..+...=|      +.-....+|..-.-.....++...+.+ .+..  -++.||++    
T Consensus        80 ~gV~lAd~La~~LgLp~~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVvKP~~gagS  159 (415)
T PRK07206         80 SGVELADRLAERLGLCYANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVIKPLESAGS  159 (415)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf             65999999999868998995568877459999999999759985538852999999999986055799989958999987


Q ss_pred             --------HHHHHHHHHHHHHC
Q ss_conf             --------89999999997403
Q gi|254780476|r  109 --------LSIFMETIKKYIGE  122 (123)
Q Consensus       109 --------~~~L~~~i~~~l~~  122 (123)
                              .+++.+...+.++.
T Consensus       160 ~gV~~c~~~~el~~a~~~i~~~  181 (415)
T PRK07206        160 DGVFFCPDKQDAYHAFNAILGK  181 (415)
T ss_pred             CCEEEECCHHHHHHHHHHHHCC
T ss_conf             9989979999999999998566


No 89 
>pfam00563 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Probab=94.41  E-value=0.33  Score=27.71  Aligned_cols=94  Identities=15%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC----CCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             98999999999997898999--988979999999827998999950412----969599999998285768995999992
Q gi|254780476|r   11 NELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ----EISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp----~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      +....+.++ .++..|+.+-  ...+|...+..+..-+||.|=+|..+-    +.+...+++.+.+......+++| .++
T Consensus       130 ~~~~~~~i~-~lk~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~l~~~a~~~~~~vi-aeG  207 (233)
T pfam00563       130 DLRLLEALA-RLRSLGFRLALDDFGTGYSSLSYLSRLPPDYIKIDRSFIKDLSDPESRALLRALIALARELGIKVV-AEG  207 (233)
T ss_pred             CHHHHHHHH-HHHHCCCCEEECCCCCCCCCHHHHHHCCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE-EEE
T ss_conf             199999999-999779958961789997677899748887899989998407772189999999999998799899-970


Q ss_pred             CCCHHHHHHHHHCCCCE----EEECC
Q ss_conf             49989999999769988----99879
Q gi|254780476|r   85 FAMKGDEERIRKGGCEA----YISKP  106 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~----~l~KP  106 (123)
                      -........+.+.|++.    |+.||
T Consensus       208 VE~~~~~~~l~~~Gv~~~QG~~~~~P  233 (233)
T pfam00563       208 VETEEQLELLKELGIDYVQGYLFSKP  233 (233)
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCCC
T ss_conf             86399999999759998316810279


No 90 
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.38  E-value=0.094  Score=30.82  Aligned_cols=79  Identities=19%  Similarity=0.288  Sum_probs=57.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             877899539989999999999978989999889799999998279989999504--129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +++||+||+-...--.+.+++...|.++.+..+..-....+....||.|++.=.  -|...|. ....||+-  ..++||
T Consensus         1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~-~~~~i~~~--~~~~Pi   77 (191)
T COG0512           1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI-SLELIRRF--AGRIPI   77 (191)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCH-HHHHHHHH--CCCCCE
T ss_conf             956999977442499999999973993499988965877886049998998489979377361-89999986--089988


Q ss_pred             EEEE
Q ss_conf             9999
Q gi|254780476|r   80 IAVT   83 (123)
Q Consensus        80 i~~t   83 (123)
                      +.+-
T Consensus        78 LGVC   81 (191)
T COG0512          78 LGVC   81 (191)
T ss_pred             EEEC
T ss_conf             9987


No 91 
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.11  E-value=0.5  Score=26.64  Aligned_cols=118  Identities=12%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             CEEEEE----CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCC
Q ss_conf             778995----3998999999999997898999---988979999999827998999950412969--5999999982857
Q gi|254780476|r    3 KKVMIV----EDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSE   73 (123)
Q Consensus         3 kkiLiV----DD~~~~~~~l~~~l~~~g~~v~---~a~~g~eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~   73 (123)
                      .||||+    |-...-++++..-+...||+|.   ...+.+|+.+...++..|+|.+...=.+--  =-++++.+|+.. 
T Consensus       583 prilvaKmGqDGHdrGak~iA~~f~D~GfdV~~~~lfqTPeE~a~~A~e~dvhvigisslaa~h~tLVP~l~~~Lk~~g-  661 (715)
T PRK09426        583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLG-  661 (715)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-
T ss_conf             7699962798721002789998887576068616755899999999997599999982334544212799999999649-


Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC----CCHHHHHHHHHHHHHC
Q ss_conf             689959999924998999999976998899879----8989999999997403
Q gi|254780476|r   74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP----ISLSIFMETIKKYIGE  122 (123)
Q Consensus        74 ~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP----i~~~~L~~~i~~~l~~  122 (123)
                      ..++|||+ -+---++|.....++|+..++.--    -...++++.+.+-++.
T Consensus       662 ~~di~Vvv-GGvIP~~D~~~L~~~GV~~if~Pgt~i~~~a~~~l~~l~~~~~~  713 (715)
T PRK09426        662 REDIMVVV-GGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLEARLGY  713 (715)
T ss_pred             CCCCEEEE-CCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             98867998-38688799999997697778589982799999999999986377


No 92 
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=92.92  E-value=0.7  Score=25.80  Aligned_cols=78  Identities=13%  Similarity=0.121  Sum_probs=49.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9877899539989999999999978989999889799999998279989999504--12969599999998285768995
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      |.+||||||.-...-..+.+.+...|..+.....-.-....+  ..|+-|++.-.  -|...+ ++...++...  ..+|
T Consensus         1 M~~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~--~~~~~IIlSpGPg~p~~~~-~~~~~i~~~~--~~~P   75 (191)
T PRK06895          1 MATNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEV--ENFSHILISPGPDVPRAYP-QLFAMLERYY--QQKS   75 (191)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHH--HCCCEEEEECCCCCCCCCC-HHHHHHHHHC--CCCC
T ss_conf             998699996988489999999987799699984784899898--5589699908999801052-2499999860--6898


Q ss_pred             EEEEE
Q ss_conf             99999
Q gi|254780476|r   79 VIAVT   83 (123)
Q Consensus        79 ii~~t   83 (123)
                      |+.+-
T Consensus        76 ILGIC   80 (191)
T PRK06895         76 ILGVC   80 (191)
T ss_pred             EEEEC
T ss_conf             78982


No 93 
>PRK10551 hypothetical protein; Provisional
Probab=92.33  E-value=0.97  Score=25.00  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=78.2

Q ss_pred             ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCC---CC--HHHHHHHHHHCCCCCCCCEE
Q ss_conf             53998999999999997898999--9889799999998279989999504129---69--59999999828576899599
Q gi|254780476|r    8 VEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQE---IS--GLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         8 VDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp~---~d--G~el~~~ir~~~~~~~ipii   80 (123)
                      +++ ....+.+ ..|...|+.+.  -..+|...+..+++-++|.|=+|-.+-.   .|  ...+++.|-+..+.-++.+|
T Consensus       394 ~~~-~~~~~~l-~~Lr~~Gv~ialDDFGtGySSL~~L~~lp~D~lKIDrsfv~~i~~~~~~~~il~~Ii~la~~l~l~vV  471 (518)
T PRK10551        394 LQE-EEALKLF-AWLHSQGIEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETVTSPVLDAVLTLAKRLNMLTV  471 (518)
T ss_pred             CCH-HHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             490-9999999-99997699499978999703589997399988998899985204690468999999999998799699


Q ss_pred             EEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
Q ss_conf             999249989999999769988----99879898999999999
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETIKK  118 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~  118 (123)
                      + -|-..+.......+.|++.    |+.||+..++|.+-+++
T Consensus       472 A-EGVEt~eq~~~L~~lG~~~~QGy~~srPmp~~~f~~wl~~  512 (518)
T PRK10551        472 A-EGVETPEQARWLREHGVNFLQGYWISRPLPLDDFVKWLKK  512 (518)
T ss_pred             E-ECCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf             9-7688699999999769998856600568999999999747


No 94 
>PRK00758 GMP synthase subunit A; Validated
Probab=92.31  E-value=0.39  Score=27.27  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=50.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHCCCCCCCCEEEE
Q ss_conf             78995399899999999999789899998897999999982799899995041296959-99999982857689959999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL-EITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~-el~~~ir~~~~~~~ipii~~   82 (123)
                      |||+||.-...-..+.+.|...|+.+....+...+-+ +.+ .||-|++.= =|+..-. ...+.+++    .++||+.+
T Consensus         1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~-i~~-~~dgiilS~-GP~~~~~~~~~~~i~~----~~iPiLGI   73 (184)
T PRK00758          1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEE-IKA-EPDGIILSG-GPEIERAGNCEEYLLE----LDVPILGI   73 (184)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHH-HHH-CCCEEEECC-CCCCCCCCCHHHHHHH----CCCCEEEE
T ss_conf             9999989863899999999978992899959898999-963-899899889-9983332206999986----59988997


Q ss_pred             E
Q ss_conf             9
Q gi|254780476|r   83 T   83 (123)
Q Consensus        83 t   83 (123)
                      -
T Consensus        74 C   74 (184)
T PRK00758         74 C   74 (184)
T ss_pred             E
T ss_conf             1


No 95 
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=91.51  E-value=0.82  Score=25.41  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEEC-CC----CCHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             9999999997898999--98897999999982799899995041-29----69599999998285768995999992499
Q gi|254780476|r   15 MKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQL-QE----ISGLEITKQIKEDSELQEIPVIAVTAFAM   87 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~m-p~----~dG~el~~~ir~~~~~~~ipii~~t~~~~   87 (123)
                      .....+.++..|+.+-  -+.+|...+..+..-+||.|=+|-.+ -+    .....+++.+.+......+++| .++-..
T Consensus       134 ~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKld~~~v~~~~~~~~~~~~l~~l~~~a~~~~i~vi-aegVE~  212 (240)
T cd01948         134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVET  212 (240)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCH
T ss_conf             9999999986499688616899876689998678015440899997364682238999999999998499899-981850


Q ss_pred             HHHHHHHHHCCCCE----EEECCCCH
Q ss_conf             89999999769988----99879898
Q gi|254780476|r   88 KGDEERIRKGGCEA----YISKPISL  109 (123)
Q Consensus        88 ~~~~~~~~~~g~~~----~l~KPi~~  109 (123)
                      +.....+.+.|++.    |+.||...
T Consensus       213 ~~~~~~l~~lgi~~~QG~~~~~P~~~  238 (240)
T cd01948         213 EEQLELLRELGCDYVQGYLFSRPLPA  238 (240)
T ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             99999999859999676912658999


No 96 
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=91.29  E-value=0.69  Score=25.85  Aligned_cols=95  Identities=17%  Similarity=0.245  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-C----CCHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             9999999997898999--988979999999827998999950412-9----69599999998285768995999992499
Q gi|254780476|r   15 MKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ-E----ISGLEITKQIKEDSELQEIPVIAVTAFAM   87 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp-~----~dG~el~~~ir~~~~~~~ipii~~t~~~~   87 (123)
                      .......++..|+.+-  -..+|...+..+..-+||.|=+|-.+= +    .....+++.+-+..+...+++|+ ++-..
T Consensus       135 ~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKld~~li~~~~~~~~~~~~~~~l~~~a~~~g~~via-egVE~  213 (241)
T smart00052      135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA-EGVET  213 (241)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCC
T ss_conf             99999999970997875378998101899986572042247999961326845589999999999985998999-71881


Q ss_pred             HHHHHHHHHCCCCE----EEECCCCHH
Q ss_conf             89999999769988----998798989
Q gi|254780476|r   88 KGDEERIRKGGCEA----YISKPISLS  110 (123)
Q Consensus        88 ~~~~~~~~~~g~~~----~l~KPi~~~  110 (123)
                      ......+.+.|++.    |+.||...+
T Consensus       214 ~~~~~~l~~~Gi~~~QG~~~~~P~p~~  240 (241)
T smart00052      214 PEQLDLLRSLGCDYGQGYLFSRPLPLD  240 (241)
T ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf             999999997499998868647589999


No 97 
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=91.21  E-value=1.3  Score=24.28  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEEEE---ECCC------CCHH----
Q ss_conf             987789953998999999999997898999-----988979999999827998999950---4129------6959----
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-----QTRNGMEALELARQHKPDVIIMDI---QLQE------ISGL----   62 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-----~a~~g~eal~~l~~~~~dlillD~---~mp~------~dG~----   62 (123)
                      |+-|||=+|.|+...+.-...-+..|..+.     +-.-.+.-.+++.+++||++++--   ...+      ++-+    
T Consensus       104 ~PGkVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSk  183 (287)
T pfam05582       104 RPGRVLHLDGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSK  183 (287)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHH
T ss_conf             98628875498999999999999719845899836012529999999872899899958457633777734666654109


Q ss_pred             ---HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC
Q ss_conf             ---99999982857689959999924998999999976998
Q gi|254780476|r   63 ---EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE  100 (123)
Q Consensus        63 ---el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~  100 (123)
                         |..+..|+-....+--||  -|.+=....+..+++|++
T Consensus       184 yFVeaVk~AR~y~p~~D~LVI--FAGACQS~yEall~AGAN  222 (287)
T pfam05582       184 YFVETVKEARKYEPSLDQLVI--FAGACQSHYEAIIEAGAN  222 (287)
T ss_pred             HHHHHHHHHHHCCCCCCCEEE--ECCHHHHHHHHHHHCCCC
T ss_conf             999999999824899663899--821447889999972766


No 98 
>PRK09776 putative sensor protein; Provisional
Probab=91.11  E-value=1.3  Score=24.22  Aligned_cols=108  Identities=14%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEEC----C-CCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             953998999999999997898999--98897999999982799899995041----2-9695999999982857689959
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQL----Q-EISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~m----p-~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +++|.....+.+ .-|+..|+.+.  -..+|-..+..+++.++|.+=+|-.+    + +.+...+++.|-...+.-.+.+
T Consensus       993 l~~~~~~~~~~l-~~Lr~lGi~ialDDFGTGySSL~yLk~lPvD~LKID~sFV~~l~~~~~d~~iV~~Ii~la~~Lgl~v 1071 (1116)
T PRK09776        993 LLNHAEAASRLV-QKLRLAGCRVVLDDFGRGLSSFNYLKAFMADYLKIDGELCANLQGNLMDEMLVSIINGIAQRLGMKT 1071 (1116)
T ss_pred             HHCCHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             334999999999-9999789999998997867899999728999899898997175799548999999999999878989


Q ss_pred             EEEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHH
Q ss_conf             9999249989999999769988----998798989999999
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETI  116 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i  116 (123)
                      |+ -+-..+.......+.|++.    |+.||...++|++.-
T Consensus      1072 VA-EGVEt~~ql~~L~~lGcd~~QGY~fsrP~Plee~l~~~ 1111 (1116)
T PRK09776       1072 IA-GPVELPLTLDTLSGIGVDLAQGYVIGRPQPLDLLLNSS 1111 (1116)
T ss_pred             EE-CCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
T ss_conf             98-68880999999997799988755006478899984455


No 99 
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=91.03  E-value=1.3  Score=24.18  Aligned_cols=92  Identities=14%  Similarity=0.277  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEEC-CCCC-HHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             399899999999999789899998---897999999982799899995041-2969-59999999828576899599999
Q gi|254780476|r    9 EDNELNMKLFRDLIETSGYIALQT---RNGMEALELARQHKPDVIIMDIQL-QEIS-GLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         9 DD~~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~~dlillD~~m-p~~d-G~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |-.+.-...+..+|+..||+|...   .+.++-.+.+++++||+|-+...+ ...+ -.++++.+|+..  .+++|++ -
T Consensus        11 ~~~plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~--p~~~iv~-G   87 (121)
T pfam02310        11 DLHPLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIR--PGVKVVV-G   87 (121)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEE-E
T ss_conf             758489999999999859950010247999999999998099999995232112113689999999859--8975998-3


Q ss_pred             ECCCHHHHHHHHH--CCCCEEE
Q ss_conf             2499899999997--6998899
Q gi|254780476|r   84 AFAMKGDEERIRK--GGCEAYI  103 (123)
Q Consensus        84 ~~~~~~~~~~~~~--~g~~~~l  103 (123)
                      |..-....+..++  .|++..+
T Consensus        88 G~~~t~~p~~~l~~~~~~D~vv  109 (121)
T pfam02310        88 GPHPTADPEEVLRAAPGIDDVV  109 (121)
T ss_pred             CCCCCCCHHHHHHCCCCCCEEE
T ss_conf             8763418999984089975899


No 100
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.87  E-value=1.4  Score=24.09  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEECC--HHHHH-HHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             9999999999978989999889--79999-999827998999950412969-5999999982857689959999924998
Q gi|254780476|r   13 LNMKLFRDLIETSGYIALQTRN--GMEAL-ELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        13 ~~~~~l~~~l~~~g~~v~~a~~--g~eal-~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      .-...+..+|++.|++|.....  ..+.+ +.+++.+||+|-+....+... ..++++.+|+..  ++++|++ -|..-.
T Consensus         3 LGl~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~--p~~~iv~-GG~h~t   79 (127)
T cd02068           3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVV-GGPHAT   79 (127)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHC--CCCEEEE-CCCCCC
T ss_conf             7999999999978995799857876203999986499699999976889999999999999978--9978998-598745


Q ss_pred             HHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             999999976998899879898999999999
Q gi|254780476|r   89 GDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        89 ~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      ...+..++...-||+..-=--..+.+.++.
T Consensus        80 ~~p~~~l~~~~~D~vv~GEGE~t~~~ll~~  109 (127)
T cd02068          80 FFPEEILEEPGVDFVVIGEGEETFLKLLEE  109 (127)
T ss_pred             CCHHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf             499999707587789968689999999999


No 101
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.     The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported.   This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=90.86  E-value=1.4  Score=24.08  Aligned_cols=102  Identities=19%  Similarity=0.338  Sum_probs=70.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCE-----EEEECCHHHHHHHHHHCCCCEEEE---EEECCCC------CHH----
Q ss_conf             9877899539989999999999978989-----999889799999998279989999---5041296------959----
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYI-----ALQTRNGMEALELARQHKPDVIIM---DIQLQEI------SGL----   62 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~-----v~~a~~g~eal~~l~~~~~dlill---D~~mp~~------dG~----   62 (123)
                      |+=|||=+|-|+...+.=-.+-+..|..     +.+..-.+.-..++..-+||++++   |-.....      +.|    
T Consensus       112 ~PGrVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSk  191 (292)
T TIGR02855       112 MPGRVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSK  191 (292)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCH
T ss_conf             88647742288889999999886619727999984121808899999730997899946663021678711364236656


Q ss_pred             ---HHHHHHHH-CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf             ---99999982-857689959999924998999999976998899879
Q gi|254780476|r   63 ---EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP  106 (123)
Q Consensus        63 ---el~~~ir~-~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP  106 (123)
                         +..+.+|. .|++-++ || + |.+=....+..+++||+ |=+=|
T Consensus       192 yFv~~V~~aR~~~P~lD~L-VI-F-AGACQShfE~li~AGAN-FASSP  235 (292)
T TIGR02855       192 YFVETVREARKYVPSLDQL-VI-F-AGACQSHFESLIRAGAN-FASSP  235 (292)
T ss_pred             HHHHHHHHHHHHCCCCCCH-HH-H-HCCCHHHHHHHHHHCCC-CCCCC
T ss_conf             8999999986317875323-43-3-21214457999974565-45771


No 102
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=90.65  E-value=1.5  Score=23.97  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEE--C--------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             778995399899999999999789899998--8--------979999999827998999950412969599999998285
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQT--R--------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS   72 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a--~--------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~   72 (123)
                      +|||+.--+ ..+..+.+.|...|+.+...  .        ......+.+....+|.|+.--..--..=+++++......
T Consensus       127 ~~vL~~~g~-~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~~~~~~~~~~~~~  205 (252)
T PRK05928        127 KRVLYLRGN-GGRPLLGDFLQERGADVDECEVYERKPPKLEGAEELIEELQTGEVDAIIFTSPSMVRAFLSLAPELYRRH  205 (252)
T ss_pred             CEEEEEECC-CCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCHH
T ss_conf             879998167-6665789999977984799986576378888279999998628987999909999999999866403025


Q ss_pred             CCCCCCEEEEEECCCHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHC
Q ss_conf             7689959999924998999999976998-8998798989999999997403
Q gi|254780476|r   73 ELQEIPVIAVTAFAMKGDEERIRKGGCE-AYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        73 ~~~~ipii~~t~~~~~~~~~~~~~~g~~-~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ...+++++.++    +.....+.+.|+. .+..+.-+.+.|++.+.++|.+
T Consensus       206 ~~~~~~iv~ig----~~ta~~~~~~G~~~~~~a~~~~~~~lv~al~~~l~~  252 (252)
T PRK05928        206 WLLRCRAVAIG----KRTAEALKELGVKVVIVPDNADNEALLRALKKSLKK  252 (252)
T ss_pred             HHHCCEEEEEC----HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             65188799989----999999998699817984999979999999999619


No 103
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]
Probab=90.16  E-value=1.6  Score=23.72  Aligned_cols=105  Identities=14%  Similarity=0.233  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             999999999978989--999889799999998279989999504129-----6959999999828576899599999249
Q gi|254780476|r   14 NMKLFRDLIETSGYI--ALQTRNGMEALELARQHKPDVIIMDIQLQE-----ISGLEITKQIKEDSELQEIPVIAVTAFA   86 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~~~dlillD~~mp~-----~dG~el~~~ir~~~~~~~ipii~~t~~~   86 (123)
                      ....+-..|...|+.  +.-..+|-..+..+++.+||.|=+|-.+=.     ..+..+++.|-...+...+.+|+ -+-.
T Consensus       137 ~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vva-EGVE  215 (256)
T COG2200         137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA-EGVE  215 (256)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEE-EECC
T ss_conf             999999999977998999789997165999985799749996999986303831179999999999974998999-7069


Q ss_pred             CHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
Q ss_conf             989999999769988----998798989999999997
Q gi|254780476|r   87 MKGDEERIRKGGCEA----YISKPISLSIFMETIKKY  119 (123)
Q Consensus        87 ~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~~  119 (123)
                      .++....+.+.|++.    |+.||...+.+...+.+.
T Consensus       216 t~~ql~~L~~~G~~~~QGy~f~~P~~~~~~~~~~~~~  252 (256)
T COG2200         216 TEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSSS  252 (256)
T ss_pred             CHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHC
T ss_conf             6999999997799988547417889868999997520


No 104
>PRK10060 RNase II stability modulator; Provisional
Probab=90.01  E-value=1.7  Score=23.65  Aligned_cols=110  Identities=18%  Similarity=0.285  Sum_probs=81.2

Q ss_pred             ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             53998999999999997898999--988979999999827998999950412-----96959999999828576899599
Q gi|254780476|r    8 VEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         8 VDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      ++|.....+. -..|...|+.+-  -..+|-..+..++..++|.|=+|-.+=     +.....+++.|-...+.-.+.+|
T Consensus       537 ~~d~~~~~~~-l~~Lr~lGv~iALDDFGTGySSLsyL~~lPvd~lKIDrsFV~~i~~d~~~~aIV~aIi~LA~~Lgl~vV  615 (663)
T PRK10060        537 IENEELALSV-IQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI  615 (663)
T ss_pred             HCCHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf             2399999999-999997899899989999733699984289998999989971604892279999999999998699899


Q ss_pred             EEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHH
Q ss_conf             999249989999999769988----998798989999999997
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETIKKY  119 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~~  119 (123)
                      + -+-..........+.|++.    |+.||+..++|..-+.++
T Consensus       616 A-EGVEt~eQ~~~L~~lGcd~~QGy~fsrPmPa~ef~~wL~~~  657 (663)
T PRK10060        616 A-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY  657 (663)
T ss_pred             E-ECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             9-13864999999997599998267536089999999999974


No 105
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=89.90  E-value=0.87  Score=25.27  Aligned_cols=74  Identities=15%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf             899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii   80 (123)
                      ||+||.....-..+.++|+..|..+....+-+-.++.+.+..||.|++.-.  -|...|  .+..+.+.     .++||+
T Consensus         2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~~~~~~~~~~-----~~iPIL   76 (195)
T PRK07649          2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFA-----GKIPIF   76 (195)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHC-----CCCCEE
T ss_conf             999958980799999999978997999889968999998419898998899999578476146799752-----899784


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780476|r   81 AVT   83 (123)
Q Consensus        81 ~~t   83 (123)
                      .+-
T Consensus        77 GIC   79 (195)
T PRK07649         77 GVC   79 (195)
T ss_pred             EEC
T ss_conf             302


No 106
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=89.80  E-value=1.7  Score=23.55  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             CCEEEEECCC----HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf             8778995399----89999999999978989999-889799999998279989999504129695999999982857689
Q gi|254780476|r    2 LKKVMIVEDN----ELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE   76 (123)
Q Consensus         2 ~kkiLiVDD~----~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~   76 (123)
                      |||||++=.-    ....+-+++..+..|.++.. |.+..++-+.+....||++++.=+.    .+ ....+++...-..
T Consensus         1 MkKILLvCaaGMSTSmlv~km~~~A~~~G~dveI~Av~~~e~~~~i~~~~yDv~LlgPQV----r~-~~~~~k~~a~~~g   75 (104)
T PRK09590          1 MAKALIICAAGMSSSLMAKKTTEFLKGKGKDIEVDAISATEGGKAIAAAAFDLYLVSPQT----KM-YFKQFEEAGSKAG   75 (104)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCEEEECHHH----HH-HHHHHHHHHHHCC
T ss_conf             955999968998799999999999997698369998488898876322688789988768----87-8999999998729


Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             959999924998999999976998899879898999999999
Q gi|254780476|r   77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      +||.++-               ..+|..=|..++.+.+.|..
T Consensus        76 iPv~vI~---------------~~~Y~Plp~g~~k~~~~i~e  102 (104)
T PRK09590         76 KPVVQIP---------------PQAYIPIPMGIEKMANLILE  102 (104)
T ss_pred             CCEEEEC---------------CCCCCCCCCCHHHHHHHHHH
T ss_conf             9778878---------------74645777788999999873


No 107
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=89.27  E-value=0.88  Score=25.25  Aligned_cols=89  Identities=16%  Similarity=0.222  Sum_probs=58.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             899539989999999999978989999889799999998279989999504--129695999999982857689959999
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      ||+||.....-..+.++|...|.++....+-+-.++.+....||.|++.-.  -|...|. ....+|..  ...+||+.+
T Consensus         2 ILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~IvlSpGPg~P~~~~~-~~~~i~~~--~~~iPiLGI   78 (187)
T PRK08007          2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI-SLDVIRHY--AGRLPILGV   78 (187)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHH--CCCCCEEEE
T ss_conf             999968981899999999877997999938989999998429897999999999589084-04689975--389988998


Q ss_pred             EECCCHHHHHHHHHCCCC
Q ss_conf             924998999999976998
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCE  100 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~  100 (123)
                      --    +...-+...|..
T Consensus        79 Cl----G~Q~ia~~~Gg~   92 (187)
T PRK08007         79 CL----GHQAMAQAFGGK   92 (187)
T ss_pred             CH----HHHHHHHHCCCE
T ss_conf             79----999999980980


No 108
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=89.09  E-value=2  Score=23.24  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             9999999997898999--988979999999827998999950412-----969599999998285768995999992499
Q gi|254780476|r   15 MKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAM   87 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~   87 (123)
                      ....-.-|...|+.+.  -..+|-..+..++..++|.|=+|-.+=     +-+...+++.|=+..+.-.+.+|+ -+-..
T Consensus       680 ~~~~l~~lr~~G~~ialDDFGtGyssl~~L~~lp~d~iKiD~~fv~~~~~~~~~~~iv~~ii~la~~l~~~vvA-EGVEt  758 (799)
T PRK11359        680 IFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA-EGVET  758 (799)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-CCCCC
T ss_conf             99999999978998999899998678999973899899989799617468953899999999999987998999-27980


Q ss_pred             HHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHH
Q ss_conf             89999999769988----9987989899999999974
Q gi|254780476|r   88 KGDEERIRKGGCEA----YISKPISLSIFMETIKKYI  120 (123)
Q Consensus        88 ~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i~~~l  120 (123)
                      ........+.|++.    |+.||+..++|..-+..+.
T Consensus       759 ~~q~~~L~~~g~d~~QGy~~~kPlp~~~~~~wl~~~~  795 (799)
T PRK11359        759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL  795 (799)
T ss_pred             HHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf             9999999975999896272262899999999984189


No 109
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=88.77  E-value=2.1  Score=23.11  Aligned_cols=82  Identities=15%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             8778995399899999999999789899998897999999982--79989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +++|..||-|......++..++..+..-...-. .+++..+..  ++||+|++|=--....-.++++.|....-++.--+
T Consensus        75 A~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~-~da~~~L~~~~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gl  153 (198)
T PRK10909         75 AAGATLLEMDRAVSQQLIKNLATLKAGNARVVN-TNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDAL  153 (198)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCE
T ss_conf             978999978999999999999984888679995-5699986255995218998999765559999999998889189969


Q ss_pred             EEEEE
Q ss_conf             99992
Q gi|254780476|r   80 IAVTA   84 (123)
Q Consensus        80 i~~t~   84 (123)
                      |++-.
T Consensus       154 iiiE~  158 (198)
T PRK10909        154 IYVES  158 (198)
T ss_pred             EEEEE
T ss_conf             99995


No 110
>PRK05670 anthranilate synthase component II; Provisional
Probab=88.25  E-value=1  Score=24.91  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             7899539989999999999978989999889799999998279989999504--12969599999998285768995999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      .|||||.....-..+.+.|...|+.+....+-.-..+.+....||.|++.-.  -|...|. ....++...  ..+||+.
T Consensus         1 miLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS~GPg~P~~~~~-~~~~i~~~~--~~iPiLG   77 (192)
T PRK05670          1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLSPGPGTPAEAGI-SLELIREFA--GKVPILG   77 (192)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-HHHHHHHHC--CCCCEEE
T ss_conf             9999968986899999999868996999989989999998509898999999999366055-499999734--6997899


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   82 VT   83 (123)
Q Consensus        82 ~t   83 (123)
                      +-
T Consensus        78 IC   79 (192)
T PRK05670         78 VC   79 (192)
T ss_pred             EE
T ss_conf             84


No 111
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=88.11  E-value=1.8  Score=23.52  Aligned_cols=75  Identities=16%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHH---CCCCEEEEEEECCCC-CHHHHHHHHHHCCCCCC
Q ss_conf             778995399899999999999789899--998897999999982---799899995041296-95999999982857689
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIA--LQTRNGMEALELARQ---HKPDVIIMDIQLQEI-SGLEITKQIKEDSELQE   76 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v--~~a~~g~eal~~l~~---~~~dlillD~~mp~~-dG~el~~~ir~~~~~~~   76 (123)
                      .|+.-+|=|+...+.-++.++..|+.-  ..... .+|++.+..   .+||+||+|..=+.. .=++.+-.+     ++.
T Consensus        85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~l-----Lr~  158 (219)
T COG4122          85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPL-----LRP  158 (219)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHCCCCCCCEEEEECCHHHCHHHHHHHHHH-----HCC
T ss_conf             7699970798999999999997597652898835-7479999733478856899837843599999999997-----378


Q ss_pred             CCEEEEE
Q ss_conf             9599999
Q gi|254780476|r   77 IPVIAVT   83 (123)
Q Consensus        77 ipii~~t   83 (123)
                      --+|++-
T Consensus       159 GGliv~D  165 (219)
T COG4122         159 GGLIVAD  165 (219)
T ss_pred             CCEEEEE
T ss_conf             9689983


No 112
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=87.04  E-value=2.2  Score=22.93  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEEC-------CHHHH-H----------------------HHHHHCCCCEEEEEEEC
Q ss_conf             953998999999999997898999988-------97999-9----------------------99982799899995041
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQTR-------NGMEA-L----------------------ELARQHKPDVIIMDIQL   56 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~a~-------~g~ea-l----------------------~~l~~~~~dlillD~~m   56 (123)
                      +||..+...+.+...|+..|+......       +|.+. +                      +...+...+..-...-+
T Consensus        24 LvDS~p~~~~a~~~~L~~lG~~~~~~e~vr~~iG~g~~~lv~r~L~~~~~~~~i~~~~~e~~~~~f~~~y~~~~~~~~ly  103 (272)
T PRK13223         24 LVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFMEAYAESHELTVVY  103 (272)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             65099999999999999888998999999999638899999998643245456679999999999999999736556768


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf             29695999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r   57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY  119 (123)
Q Consensus        57 p~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~  119 (123)
                      |  +-.|+++.+++    +.+|+-++|++............|..+|+           .|| +|+.++.++++.
T Consensus       104 P--GV~e~L~~L~~----~Gi~laIvTnk~~~~~~~iL~~lgL~~~Fd~VvggDdv~~~KP-dP~~ll~ale~l  170 (272)
T PRK13223        104 P--GVRDTLKWLRK----QGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKP-DPAALLFVMKMA  170 (272)
T ss_pred             C--CHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf             4--79999999997----8997899639817899999987497241464534576999999-989999999995


No 113
>CHL00101 trpG anthranilate synthase component 2
Probab=87.02  E-value=1.7  Score=23.63  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf             899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii   80 (123)
                      |||||.-...-..+.+.+...|..+....+-.-.++.+....||.|++.-.  -|...|  .++.+.+.     ..+||+
T Consensus         2 ILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS~GPg~p~~~~~~~~~~~~~~-----~~iPIL   76 (190)
T CHL00101          2 ILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIISPGPGHPRDSGISLDVISSYA-----PTIPIL   76 (190)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHH-----CCCCEE
T ss_conf             999978880899999999868998999869989999997079798999799999578576168999971-----499878


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780476|r   81 AVT   83 (123)
Q Consensus        81 ~~t   83 (123)
                      .+-
T Consensus        77 GIC   79 (190)
T CHL00101         77 GVC   79 (190)
T ss_pred             EEC
T ss_conf             973


No 114
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=86.94  E-value=2.7  Score=22.45  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=73.4

Q ss_pred             CCCEEEEECCCH--------HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCCHH---------
Q ss_conf             987789953998--------9999999999978989999889799999998279989999504-1296959---------
Q gi|254780476|r    1 MLKKVMIVEDNE--------LNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-LQEISGL---------   62 (123)
Q Consensus         1 m~kkiLiVDD~~--------~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-mp~~dG~---------   62 (123)
                      |.+||.|+=--.        ...+.+.+.|...||++....-..+....++...||+++.=+. -++.||.         
T Consensus         3 ~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~~~~~l~~~~~D~vf~~lHG~~GEDG~iQglLe~~~   82 (304)
T PRK01372          3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDPAAELKELGFDRVFNALHGRGGEDGTIQGLLELLG   82 (304)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf             77718999367871289999999999998837599799982896467787533999999906899985649999999859


Q ss_pred             -----------------HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC------------HHHHH
Q ss_conf             -----------------9999998285768995999992499899999997699889987989------------89999
Q gi|254780476|r   63 -----------------EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS------------LSIFM  113 (123)
Q Consensus        63 -----------------el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~------------~~~L~  113 (123)
                                       .+++++=+.......|-+.++.....  .....+.|.- ++.||.+            .++|.
T Consensus        83 IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~--~~~~~~l~~P-~iVKP~~~GSSiGv~~V~~~~el~  159 (304)
T PRK01372         83 IPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDL--LAAIDKLGLP-LVVKPAREGSSVGVTKVKEADELP  159 (304)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH--HHHHHHHCCC-EEEEECCCCCCCCEEEECCHHHHH
T ss_conf             9835799899877653899999999869998984998653139--9998761898-799766888666538966988999


Q ss_pred             HHHHHHH
Q ss_conf             9999974
Q gi|254780476|r  114 ETIKKYI  120 (123)
Q Consensus       114 ~~i~~~l  120 (123)
                      ..++.+.
T Consensus       160 ~ai~~a~  166 (304)
T PRK01372        160 AALELAF  166 (304)
T ss_pred             HHHHHHH
T ss_conf             9999987


No 115
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=86.91  E-value=1.5  Score=23.94  Aligned_cols=76  Identities=13%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             899539989999999999978989999889799999998279989999504--129695999999982857689959999
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      |||||.....-..+.+.|...|.++....+-+-.++-+....||.|++.=.  -|...|. ....+|...  ..+||+.+
T Consensus         2 ILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~ivLSpGPG~P~~~~~-~~~~i~~~~--~~iPILGI   78 (191)
T PRK06774          2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHVVISPGPCTPNEAGI-SLAVIRHFA--DKLPILGV   78 (191)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHCC-HHHHHHHHC--CCCCEEEE
T ss_conf             999969997699999999877995999869988999998539996999999989679073-068999744--69978861


Q ss_pred             E
Q ss_conf             9
Q gi|254780476|r   83 T   83 (123)
Q Consensus        83 t   83 (123)
                      =
T Consensus        79 C   79 (191)
T PRK06774         79 C   79 (191)
T ss_pred             H
T ss_conf             6


No 116
>KOG1562 consensus
Probab=86.75  E-value=2.8  Score=22.39  Aligned_cols=64  Identities=22%  Similarity=0.249  Sum_probs=50.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHC--CCE---E-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             7899539989999999999978--989---9-99889799999998279989999504129695999999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETS--GYI---A-LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ   67 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~--g~~---v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~   67 (123)
                      .|+++|-+....+.=+.++...  ||+   | ....+|...++.+.++++|+|++|..=|.+.+..+.++
T Consensus       147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~  216 (337)
T KOG1562         147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQK  216 (337)
T ss_pred             CEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             0675433678999999873887536789714899556899998703697418997167767558898888


No 117
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=86.28  E-value=0.8  Score=25.49  Aligned_cols=89  Identities=21%  Similarity=0.168  Sum_probs=57.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCE-EEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH--HHHHHCCCCCC
Q ss_conf             9877899539989999999999978989-999-8897999999982799899995041296959999--99982857689
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYI-ALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEIT--KQIKEDSELQE   76 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~-v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~--~~ir~~~~~~~   76 (123)
                      |++||.|||=|+....++.+.-+..|+. +.. ..+-..++---..++||+++.|=-= -..|+.+.  |-|-.......
T Consensus       174 mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe-Ti~alk~FlgRGI~tLkg~~~  252 (354)
T COG1568         174 MPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE-TIKALKLFLGRGIATLKGEGC  252 (354)
T ss_pred             CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHH-HHHHHHHHHHCCHHHHCCCCC
T ss_conf             8733799831589999999999984833155403051045839888507764359633-579999998511887358874


Q ss_pred             CCEEEEEECCCHHH
Q ss_conf             95999992499899
Q gi|254780476|r   77 IPVIAVTAFAMKGD   90 (123)
Q Consensus        77 ipii~~t~~~~~~~   90 (123)
                      --...+|....+-+
T Consensus       253 aGyfgiT~ressid  266 (354)
T COG1568         253 AGYFGITRRESSID  266 (354)
T ss_pred             CCEEEEEECCCCHH
T ss_conf             53686641426288


No 118
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=86.24  E-value=2.9  Score=22.23  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHCCC--EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE--EEECCCHH
Q ss_conf             9999999997898--999-988979999999827998999950412969599999998285768995999--99249989
Q gi|254780476|r   15 MKLFRDLIETSGY--IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA--VTAFAMKG   89 (123)
Q Consensus        15 ~~~l~~~l~~~g~--~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~--~t~~~~~~   89 (123)
                      .+.+++.=+..+|  .++ +++|-+|+.+.+... .|+|+||    +|+..++.+.++......  |-++  .||.-..+
T Consensus       173 ~~Av~~aR~~~~~~~kiEVEVenlE~a~eA~~AG-ADiImLD----Nm~p~~~~~av~~~~~~~--p~~~~EaSGGitl~  245 (276)
T TIGR00078       173 EKAVKRARAALPFAKKIEVEVENLEEAEEAAEAG-ADIIMLD----NMKPEEIKEAVELLKGRN--PNVLVEASGGITLD  245 (276)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC-CCEEECC----CCCHHHHHHHHHHHHHCC--CEEEEEEECCCCHH
T ss_conf             9999999984899807998628989999999709-9599806----989479999999997029--90899983699878


Q ss_pred             HHHHHHHCCCCE
Q ss_conf             999999769988
Q gi|254780476|r   90 DEERIRKGGCEA  101 (123)
Q Consensus        90 ~~~~~~~~g~~~  101 (123)
                      ........|+|-
T Consensus       246 n~~~ya~~gVD~  257 (276)
T TIGR00078       246 NIEEYAETGVDV  257 (276)
T ss_pred             HHHHHHHCCCCE
T ss_conf             999984089758


No 119
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=85.64  E-value=3.1  Score=22.06  Aligned_cols=88  Identities=9%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             CCEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87789953998----9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .||+-++.+|-    ...+.++..++..|.++..       ..+-...+..+++..||+|++-  ....++..++++.++
T Consensus       132 ~k~vavi~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~  209 (333)
T cd06358         132 ARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLST--LVGQDAVAFNRQFAA  209 (333)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHH
T ss_conf             978999926834658899999999997498599998279999789999999997498999993--777239999999997


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHH
Q ss_conf             85768995999992499899999
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEER   93 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~   93 (123)
                      ..-  ..+++..++...+.....
T Consensus       210 ~G~--~~~~~~~~~~~~~~~~~~  230 (333)
T cd06358         210 AGL--RDRILRLSPLMDENMLLA  230 (333)
T ss_pred             CCC--CCCEEEEECCCCHHHHHH
T ss_conf             699--987466645678799986


No 120
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=85.57  E-value=1.7  Score=23.66  Aligned_cols=87  Identities=11%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf             899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii   80 (123)
                      ||+||.....-..+.+.|...|..+....+-+--++.+....|+.|++.-.  -|...|  .+..+.+     ...+||+
T Consensus         2 iLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~IilS~GPg~p~~~~~~~~~~~~~-----~~~iPIL   76 (192)
T PRK08857          2 LLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVISPGPCTPNEAGISLQAIEHF-----AGKLPIL   76 (192)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHH-----CCCCCEE
T ss_conf             99997999779999999987799289996998999999842979599989999967828614669973-----5799989


Q ss_pred             EEEECCCHHHHHHHHHCCCC
Q ss_conf             99924998999999976998
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCE  100 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~  100 (123)
                      .+=-    +...-+...|..
T Consensus        77 GICl----G~Q~ia~~~Gg~   92 (192)
T PRK08857         77 GVCL----GHQAIAQVFGGD   92 (192)
T ss_pred             EECH----HHHHHHHHHCCE
T ss_conf             9879----999999983982


No 121
>PRK11596 EAL domain-containing protein; Provisional
Probab=84.97  E-value=3.4  Score=21.87  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             HHHCC-CEEEEECCHHHHHHHHHHCCCCEEEEEEEC-----CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf             99789-899998897999999982799899995041-----296959999999828576899599999249989999999
Q gi|254780476|r   22 IETSG-YIALQTRNGMEALELARQHKPDVIIMDIQL-----QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR   95 (123)
Q Consensus        22 l~~~g-~~v~~a~~g~eal~~l~~~~~dlillD~~m-----p~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~   95 (123)
                      +...| +.+.-..+|-..+..+++-++|.|=+|-.+     .+..+..+++.|=+..+.-...+|+ -|-..........
T Consensus       149 l~~~~~lalDDFGTGySSLsyL~~lp~d~lKIDrsFv~~~~~~~~~~~iv~~ii~la~~Lg~~VVA-EGVET~eQ~~~L~  227 (255)
T PRK11596        149 MCEFGPLWLDDFGTGMANFSALSEVRYDYIKVARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIV-EGVETPEEWRDVQ  227 (255)
T ss_pred             HHHCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECCCHHHHHHHH
T ss_conf             985792888369886789999986899989987799854236963799999999999983990899-7098599999999


Q ss_pred             HCCCCE----EEECCCCHHHHHHHH
Q ss_conf             769988----998798989999999
Q gi|254780476|r   96 KGGCEA----YISKPISLSIFMETI  116 (123)
Q Consensus        96 ~~g~~~----~l~KPi~~~~L~~~i  116 (123)
                      +.|++.    |+.||+..++|.+..
T Consensus       228 ~~Gc~~~QGY~fsrP~p~d~l~~L~  252 (255)
T PRK11596        228 RSPAFAAQGYFLSRPAPFDTLETLP  252 (255)
T ss_pred             HCCCCEEECCCCCCCCCHHHHHHHH
T ss_conf             7699997458114179999999656


No 122
>PRK13229 consensus
Probab=84.87  E-value=2.2  Score=23.00  Aligned_cols=114  Identities=15%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             CCCEEEE-------ECCCHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHH-H--HCC----------------
Q ss_conf             9877899-------53998999999999997898999988--------979999999-8--279----------------
Q gi|254780476|r    1 MLKKVMI-------VEDNELNMKLFRDLIETSGYIALQTR--------NGMEALELA-R--QHK----------------   46 (123)
Q Consensus         1 m~kkiLi-------VDD~~~~~~~l~~~l~~~g~~v~~a~--------~g~eal~~l-~--~~~----------------   46 (123)
                      |.+|++|       +|..+.....+...++..|+....-.        .+...++.. .  ...                
T Consensus         5 M~~klIiFDlDGTLvDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (234)
T PRK13229          5 MQKPIIVFDLDGTLVDTAPDLLDSLNHCLAASGLKPVDYGDLRRFVGQGARVMIERAFAAQGRQLDEAELDKLVEEFRAH   84 (234)
T ss_pred             CCCCEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999989798883509999999999999987989999999999828777899999998717899999999999999999


Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHH
Q ss_conf             989999504129695999999982857689959999924998999999976998899-----------879898999999
Q gi|254780476|r   47 PDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMET  115 (123)
Q Consensus        47 ~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~  115 (123)
                      +.--+..-..|--+-.++++.+|+.    .+++-++|+.............|..+|+           .|| +++.++.+
T Consensus        85 y~~~~~~~~~~~pGv~e~L~~L~~~----G~~laI~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~~~~~KP-~P~~~~~a  159 (234)
T PRK13229         85 YAAHMPGHSSPYPGLLEAMDRFASA----GYQLAVCTNKYEELSVKLLESLGLAARFAAICGGDTFSWRKP-DPRHLTET  159 (234)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHC----CCCEEECCCCHHHHHHHHHHCCCCHHHHCEEEECCCCCCCCC-CHHHHHHH
T ss_conf             9985220181574799999999977----997452169707888877521362123036761355778998-89999999


Q ss_pred             HHHH
Q ss_conf             9997
Q gi|254780476|r  116 IKKY  119 (123)
Q Consensus       116 i~~~  119 (123)
                      +++.
T Consensus       160 l~~l  163 (234)
T PRK13229        160 IARA  163 (234)
T ss_pred             HHHH
T ss_conf             9981


No 123
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity.  Members of this group include ABC
Probab=84.64  E-value=3.5  Score=21.78  Aligned_cols=102  Identities=17%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             CCEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             8778995-3998---9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIV-EDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiV-DD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .|||-++ +|++   ...+.+++.++..|+++..       ..+-...+..+++..||.|++-..  ..++..+++++++
T Consensus       135 ~~~vaiv~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~--~~~~~~~~~~~~~  212 (298)
T cd06268         135 VKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGY--GGDAALFLKQARE  212 (298)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHH
T ss_conf             85899977873467999999999899749989999964876577799999999769999999176--2678999999998


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             8576899599999249989999999769988998798
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      ..-  ..|++..+............+..-..++.-|.
T Consensus       213 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  247 (298)
T cd06268         213 AGL--KVPIVGGDGAAAPALLELAGDAAEGVLGTTPY  247 (298)
T ss_pred             CCC--CCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf             299--97399956777789999788975887999856


No 124
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.62  E-value=3.5  Score=21.78  Aligned_cols=105  Identities=17%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEE---------CCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             989999999999978989999-889799999998279989999504---------1296959999999828576899599
Q gi|254780476|r   11 NELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQ---------LQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~---------mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      .....++++.+-+..|..+.. +++-+||+...+.. +|+|=.-+.         .+....|++++++++.    .+|+|
T Consensus       104 g~~~~~~i~~i~~~~~~l~MAD~st~eea~~A~~~G-~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~----~~pvI  178 (222)
T PRK01130        104 GETLAELVKRIKEKPGQLLMADCSTLEEGLAAAKLG-FDFIGTTLSGYTEYTEGETPEEPDFALLKELLKA----GCPVI  178 (222)
T ss_pred             CCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC----CCCEE
T ss_conf             968999999999982987898548899999999849-9999723345676767787899869999999958----99899


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECC-C-CHHHHHHHHHHHH
Q ss_conf             99924998999999976998899879-8-9899999999974
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKP-I-SLSIFMETIKKYI  120 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KP-i-~~~~L~~~i~~~l  120 (123)
                      +=-....+....++++.|+...+.=- + +++..-....+.+
T Consensus       179 aEGri~tPe~a~~al~~GA~aVvVGsAITrP~~IT~~F~~ai  220 (222)
T PRK01130        179 AEGRINTPEQAKKALELGAHAVVVGSAITRPEEITKWFVDAL  220 (222)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             747989999999999849989998975479899999999997


No 125
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase.  These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=84.42  E-value=1.8  Score=23.45  Aligned_cols=74  Identities=20%  Similarity=0.350  Sum_probs=50.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCH--HHHHHHHHHCCCCCCCCEE
Q ss_conf             899539989999999999978989999889799999998279989999504--129695--9999999828576899599
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQEISG--LEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~~dG--~el~~~ir~~~~~~~ipii   80 (123)
                      |||||-....-..+.+.+...|+.+.....-.-..+.+....||.|++.-.  -|...+  .++.+.++     ..+||+
T Consensus         1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~~~~~~~~l~-----~~iPiL   75 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALA-----GKVPIL   75 (184)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHH-----CCCCEE
T ss_conf             899937981799999999867995999989999999997329799999999989256146099999984-----699899


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780476|r   81 AVT   83 (123)
Q Consensus        81 ~~t   83 (123)
                      .+-
T Consensus        76 GIC   78 (184)
T cd01743          76 GVC   78 (184)
T ss_pred             EEC
T ss_conf             980


No 126
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=84.20  E-value=3.7  Score=21.67  Aligned_cols=88  Identities=19%  Similarity=0.282  Sum_probs=61.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             789953998999999999997898999988979-99999982--799899995041296959999999828576899599
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGM-EALELARQ--HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~-eal~~l~~--~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +||+|=-.+.....++..++..|+....-.+|. +.-..+..  ..+|+|++=..   .-+...+..+|+......+|++
T Consensus         1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~td---~vsH~~~~~vK~~akk~~~p~v   77 (96)
T pfam10087         1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFTD---CVSHDAMWRVKEEAKKRGIPVV   77 (96)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECC---CCCHHHHHHHHHHHHHHCCCEE
T ss_conf             9999958556789999999983998999658987335567750589888999717---6687999999999998499789


Q ss_pred             EEEECCCHHHHHHH
Q ss_conf             99924998999999
Q gi|254780476|r   81 AVTAFAMKGDEERI   94 (123)
Q Consensus        81 ~~t~~~~~~~~~~~   94 (123)
                      +..+.+........
T Consensus        78 ~~~s~s~~~l~~~l   91 (96)
T pfam10087        78 FSRSRSLSALERAL   91 (96)
T ss_pred             EECCCCHHHHHHHH
T ss_conf             97687499999999


No 127
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=82.67  E-value=4.3  Score=21.31  Aligned_cols=95  Identities=18%  Similarity=0.346  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEECCC-CCH-HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             399899999999999789899998---89799999998279989999504129-695-9999999828576899599999
Q gi|254780476|r    9 EDNELNMKLFRDLIETSGYIALQT---RNGMEALELARQHKPDVIIMDIQLQE-ISG-LEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         9 DD~~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~~dlillD~~mp~-~dG-~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |-...=..++..+|+..||+|.--   -..+..++.++++.||+|-+...|-- +.. -++.+.+|+.. . ++||+ +-
T Consensus        99 D~HdiGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~divglSallTtTm~~mk~vi~~l~~~g-~-~vkv~-vG  175 (213)
T cd02069          99 DVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRG-I-KIPLL-IG  175 (213)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-C-CEEEE-EC
T ss_conf             634121899999999789668850589989999999997499999983230304999999999999749-9-81799-71


Q ss_pred             ECCC-HHHHHHH---HHCCCCEEEECC
Q ss_conf             2499-8999999---976998899879
Q gi|254780476|r   84 AFAM-KGDEERI---RKGGCEAYISKP  106 (123)
Q Consensus        84 ~~~~-~~~~~~~---~~~g~~~~l~KP  106 (123)
                      +.+. +....+.   .-.|++.|-.-.
T Consensus       176 Ga~vt~~fa~~~~~~~y~Gad~y~~dA  202 (213)
T cd02069         176 GAATSRKHTAVKIAPEYDGPVVYVKDA  202 (213)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCEEECCH
T ss_conf             632788899876410367980784399


No 128
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=82.48  E-value=4.3  Score=21.26  Aligned_cols=86  Identities=22%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             CCEEEEECCCHHH----HHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             8778995399899----9999999997898999988---------97999999982799899995041296959999999
Q gi|254780476|r    2 LKKVMIVEDNELN----MKLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQI   68 (123)
Q Consensus         2 ~kkiLiVDD~~~~----~~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i   68 (123)
                      .||+|||-|....    .+.+.+.|+..|..+...+         +..++.+.++++.+|+|+-   +-+.+-++.++.+
T Consensus        29 ~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~Iia---vGGGSviD~AKai  105 (381)
T PRK10624         29 YHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADYLIA---IGGGSPQDTCKAI  105 (381)
T ss_pred             CCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCHHHHHHHHH
T ss_conf             9879999696545563699999999876983999889258989999999999998649998998---0894088899999


Q ss_pred             H---HCC--------------CCCCCCEEEEEECCCHHH
Q ss_conf             8---285--------------768995999992499899
Q gi|254780476|r   69 K---EDS--------------ELQEIPVIAVTAFAMKGD   90 (123)
Q Consensus        69 r---~~~--------------~~~~ipii~~t~~~~~~~   90 (123)
                      .   .++              ..+.+|+|.+.+-...+.
T Consensus       106 a~~~~~~~~~~~~~~~g~~~~~~~~lP~iaIPTTaGTGS  144 (381)
T PRK10624        106 GIISNNPEFADVRSLEGLAPTKKPSVPIIAIPTTAGTAA  144 (381)
T ss_pred             HHHHCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             999709851147875265655578888899748976776


No 129
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.36  E-value=4.4  Score=21.24  Aligned_cols=106  Identities=10%  Similarity=0.026  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             989999999999978989--999889799999998279989999504129695999999982857689959999924998
Q gi|254780476|r   11 NELNMKLFRDLIETSGYI--ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      |...-..+++-|..-...  +..........+.+...-||.+++|.+=-..|--++...++........|++=+ ....+
T Consensus         3 ~~~~pN~lk~~L~~g~~~~G~~~~~~sp~~~Ei~a~~G~Dfv~iD~EHg~~~~~~l~~~i~a~~~~~~~~lVRv-p~~~~   81 (256)
T PRK10558          3 NDVFPNKFKAALAAKQVQIGCWSALSNPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEP   81 (256)
T ss_pred             CCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEC-CCCCH
T ss_conf             86578099999977997799885789989999997289899998377899999999999999971799748967-88988


Q ss_pred             HHHHHHHHCCCCEEEECCC-CHHHHHHHHH
Q ss_conf             9999999769988998798-9899999999
Q gi|254780476|r   89 GDEERIRKGGCEAYISKPI-SLSIFMETIK  117 (123)
Q Consensus        89 ~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~  117 (123)
                      ....++++.|+++.+.-=+ +.++..+.++
T Consensus        82 ~~i~r~LD~Ga~GvivP~V~s~eea~~~V~  111 (256)
T PRK10558         82 VIIKRLLDIGFYNFLIPFVETAEEARRAVA  111 (256)
T ss_pred             HHHHHHHCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             999999707987556147699999999998


No 130
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=82.03  E-value=4.5  Score=21.16  Aligned_cols=80  Identities=11%  Similarity=0.210  Sum_probs=49.1

Q ss_pred             CCCEEEEECCC-----HHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             98778995399-----899999999999789899998897-999999982799899995041296959999999828576
Q gi|254780476|r    1 MLKKVMIVEDN-----ELNMKLFRDLIETSGYIALQTRNG-MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL   74 (123)
Q Consensus         1 m~kkiLiVDD~-----~~~~~~l~~~l~~~g~~v~~a~~g-~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~   74 (123)
                      |+||||++=-+     ....+-++++++..|+.+.....- .|.-.  ....+|+++.-...|.              .+
T Consensus         1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~~--~~~~~DlivtTt~~~~--------------~~   64 (94)
T PRK10310          1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET--YMDGVHLICTTARVDR--------------SF   64 (94)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHH--CCCCCCEEEEECCCCC--------------CC
T ss_conf             9955999858837599999999999999859806899974787554--1689778999225377--------------65


Q ss_pred             CCCCEE----EEEECCCHHHHHHHHH
Q ss_conf             899599----9992499899999997
Q gi|254780476|r   75 QEIPVI----AVTAFAMKGDEERIRK   96 (123)
Q Consensus        75 ~~ipii----~~t~~~~~~~~~~~~~   96 (123)
                      .++|+|    ++|+.......++.++
T Consensus        65 g~iPvi~g~~fLTGiG~d~~~~~Il~   90 (94)
T PRK10310         65 GDIPLVHGMPFVSGVGIEALQNKILT   90 (94)
T ss_pred             CCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf             88877963420003788999999999


No 131
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=81.67  E-value=4.6  Score=21.09  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=51.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHC----CCCEEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf             77899539989999999999978989--99-988979999999827----998999950412969599999998285768
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYI--AL-QTRNGMEALELARQH----KPDVIIMDIQLQEISGLEITKQIKEDSELQ   75 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~--v~-~a~~g~eal~~l~~~----~~dlillD~~mp~~dG~el~~~ir~~~~~~   75 (123)
                      -+|.-+|=|+...+..+++++..|+.  +. ...++.+.++.+.++    +||+|++|..=.  +-.+.+..+..  .++
T Consensus        70 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDadK~--~Y~~y~e~~~~--lL~  145 (204)
T pfam01596        70 GKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFAFVDADKS--SYPNYYERLLE--LVK  145 (204)
T ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCHH--HHHHHHHHHHH--HHC
T ss_conf             68999980489999999999977987447999874999999998447777643899818887--77999999998--636


Q ss_pred             CCCEEEEEEC
Q ss_conf             9959999924
Q gi|254780476|r   76 EIPVIAVTAF   85 (123)
Q Consensus        76 ~ipii~~t~~   85 (123)
                      .=-+|++-..
T Consensus       146 ~gGiii~DNv  155 (204)
T pfam01596       146 VGGLIAIDNT  155 (204)
T ss_pred             CCEEEEEECC
T ss_conf             9809999445


No 132
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=81.55  E-value=3  Score=22.14  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH--HHHHHCCCCCCC
Q ss_conf             9877899539989999999999978989999-8897999999982799899995041296959999--999828576899
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEIT--KQIKEDSELQEI   77 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~--~~ir~~~~~~~i   77 (123)
                      +.++|.|||=|+...+++.+..+..|+.+.+ ..+-...+----...||+++.|=-= -..|+.+.  |.|-........
T Consensus        66 ~p~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TDPPy-T~~G~~LFlsRgi~~Lk~eg~a  144 (243)
T pfam01861        66 LPKRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITDPPE-TVDGLKAFLGRGIATLKGEGCA  144 (243)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECCCCC-CHHHHHHHHHHHHHHHCCCCCC
T ss_conf             985489996758999999999997499716887410148999996167989718998-7789999999999982668852


Q ss_pred             CEEEEEECC
Q ss_conf             599999249
Q gi|254780476|r   78 PVIAVTAFA   86 (123)
Q Consensus        78 pii~~t~~~   86 (123)
                      -...+|-..
T Consensus       145 gYfglt~~e  153 (243)
T pfam01861       145 GYFGITHRE  153 (243)
T ss_pred             CEEEEECCC
T ss_conf             268764260


No 133
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=81.42  E-value=4.7  Score=21.03  Aligned_cols=81  Identities=19%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             HHCCCEEEEECCHH--------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             97898999988979--------9999998279989999504129695999999982857689959999924998999999
Q gi|254780476|r   23 ETSGYIALQTRNGM--------EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        23 ~~~g~~v~~a~~g~--------eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      ...+..+..+.+|.        +....+.++.||+++.=.-=|..-|-.-+|.+-+.   ..+|.|++|........+..
T Consensus        28 dRedI~vrv~gsGaKm~pe~~~~v~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~kd~l  104 (276)
T PRK00994         28 DREDIDVRVVGSGAKMGPEEVERVVKKMKEWKPDFIIVISPNPAAPGPTKAREILSA---AGIPCIVIGDAPGKKKKDAM  104 (276)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHH
T ss_conf             346854999526677797899999999884089989997899889995679999975---69988997488533148899


Q ss_pred             HHCCCCEEEECC
Q ss_conf             976998899879
Q gi|254780476|r   95 RKGGCEAYISKP  106 (123)
Q Consensus        95 ~~~g~~~~l~KP  106 (123)
                      .+.|+-.++.|.
T Consensus       105 ~~~g~GYIivk~  116 (276)
T PRK00994        105 EEQGFGYIIVKA  116 (276)
T ss_pred             HHCCCCEEEEEC
T ss_conf             864984799836


No 134
>PRK13138 consensus
Probab=81.23  E-value=4.8  Score=21.00  Aligned_cols=45  Identities=31%  Similarity=0.491  Sum_probs=29.2

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCC
Q ss_conf             9999999828576899599999249------9899999997699889987989
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPIS  108 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~  108 (123)
                      |++++++|.  ...++|++++|.++      .+....++.++|+++.+.--+.
T Consensus        78 ~~~~~~ir~--~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP  128 (264)
T PRK13138         78 LEITAEIHK--LHPEIPLVYLTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLP  128 (264)
T ss_pred             HHHHHHHCC--CCCCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCC
T ss_conf             446776033--589888897521238988489999999987697758536898


No 135
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=80.81  E-value=5  Score=20.91  Aligned_cols=113  Identities=14%  Similarity=0.227  Sum_probs=78.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHC
Q ss_conf             87789953998999999999997898999988---------979999999827998999950412969599-99999828
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLE-ITKQIKED   71 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~e-l~~~ir~~   71 (123)
                      .+||||+=-+ --|+.+.+-|...|..|..+.         +..+..+.+....+|+|++--.    .+++ +++.+...
T Consensus       130 g~rVLi~rG~-gGR~~L~~~L~~rGa~V~~~~~YrR~~p~~~~~~~~~~~~~~~id~i~~TS~----e~l~~l~~l~~~~  204 (255)
T PRK05752        130 DPRVLIMRGE-GGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSG----QGFEHLLQLAGAD  204 (255)
T ss_pred             CCEEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCH----HHHHHHHHHHHHH
T ss_conf             8879998167-6178999999988998989987884389998499999998089999998819----9999999971045


Q ss_pred             -CCCCCCCEEEEEECCCHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHHHCC
Q ss_conf             -5768995999992499899999997699889-987989899999999974039
Q gi|254780476|r   72 -SELQEIPVIAVTAFAMKGDEERIRKGGCEAY-ISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        72 -~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~-l~KPi~~~~L~~~i~~~l~~a  123 (123)
                       +.+..+|+++.|    +-..+.+.+.|+... +.++-+.+.|++.+.++.+-|
T Consensus       205 ~~~l~~~~lvv~s----~RiA~~A~~lG~~~v~~a~~as~~all~AL~~~~ap~  254 (255)
T PRK05752        205 WPELARLPLFVPS----PRVAEQARAAGAQRVVDCRGASAAALLAALRRQAAPA  254 (255)
T ss_pred             HHHHCCCCEEEEC----HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             7986388399838----9999999986999668899999799999999853478


No 136
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=80.78  E-value=4.9  Score=20.93  Aligned_cols=74  Identities=18%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCC--CCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             99539989999999999978989999889799999998279989999504--129--69599999998285768995999
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ--LQE--ISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~--mp~--~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ||||--..+-..+.+.|...|+.+........+.+......||.|++.-.  -|.  ..-.++.+++.+    ..+||+.
T Consensus         1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~----~~~PiLG   76 (187)
T pfam00117         1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGGAIEAIKELRE----NKIPILG   76 (187)
T ss_pred             CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHH----CCCCEEE
T ss_conf             989378638999999998689979999899986999852599989991998611013458999999997----7998999


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   82 VT   83 (123)
Q Consensus        82 ~t   83 (123)
                      +-
T Consensus        77 IC   78 (187)
T pfam00117        77 IC   78 (187)
T ss_pred             EE
T ss_conf             98


No 137
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=80.67  E-value=5  Score=20.88  Aligned_cols=60  Identities=25%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             HHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             999827998999950412969-599999998285768995999992499899999997699889
Q gi|254780476|r   40 ELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        40 ~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +.+-+.-.|+|++|.-=-.-. =++.+++||+.  +.++|||+ -+-...+......++|++..
T Consensus       229 ~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~~--~p~~~iIa-GNVaT~e~a~~Li~aGAD~v  289 (467)
T pfam00478       229 EALVEAGVDVIVIDSAHGHSEYVLEMIKWIKKK--YPDLDVIA-GNVVTAEAARELIDAGADAV  289 (467)
T ss_pred             HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEE-EEECCHHHHHHHHHHCCCEE
T ss_conf             999876998899734454418899999998740--78773785-10058999999997077757


No 138
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=79.51  E-value=4  Score=21.46  Aligned_cols=107  Identities=12%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEECCH--------HHHH------------H-HHHH--CCCCEEEEEEECCCCCH-H
Q ss_conf             95399899999999999789899998897--------9999------------9-9982--79989999504129695-9
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQTRNG--------MEAL------------E-LARQ--HKPDVIIMDIQLQEISG-L   62 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~a~~g--------~eal------------~-~l~~--~~~dlillD~~mp~~dG-~   62 (123)
                      +||..+.....+...+...|+.......-        ...+            + ...+  +.+.-.+ ....+-.+| .
T Consensus        15 LvDS~~~~~~~~~~~l~~~g~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~pGv~   93 (221)
T PRK13226         15 LLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGSRAMLAVAFAELDAAARQALVPEFLQRYEALI-GTQSQLFDGVE   93 (221)
T ss_pred             HHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHH
T ss_conf             45189999999999999886999999999999523488887510346899999999999999999976-21486456799


Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf             99999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r   63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY  119 (123)
Q Consensus        63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~  119 (123)
                      ++++.+|+    +.+++-++|++.....+......|..+|+           .|| +++-++.++++.
T Consensus        94 e~L~~L~~----~g~~~~VvTnk~~~~~~~~l~~~gl~~~F~~iv~~ddv~~~KP-~Pd~~l~a~~~l  156 (221)
T PRK13226         94 MMLARLEC----AGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKP-HPLPLLTAAERI  156 (221)
T ss_pred             HHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC-CHHHHHHHHHHH
T ss_conf             99999997----7990898559818889999998398522330001444567788-869999999994


No 139
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=79.48  E-value=5.5  Score=20.65  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=53.3

Q ss_pred             CCEEEEECCCHHHH---HHHHHHHHHCCCEEEEE--------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87789953998999---99999999789899998--------89799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIVEDNELNM---KLFRDLIETSGYIALQT--------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~~~~---~~l~~~l~~~g~~v~~a--------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .||+|||-|.....   +.+...|+..|+++...        .+.+++.+..+++.+|+|+-   +-+.+-+++++.+..
T Consensus        29 G~r~liVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~pt~~~v~~~~~~~~~~~~D~Iia---vGGGS~iD~AKaia~  105 (366)
T PRK09423         29 GKRALLIADEFVLGIVGDTVEASLKDAGLDVVFEVFNGECSDNEIDRLVAIAEENGCDVIIG---IGGGKTLDTAKAVAD  105 (366)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHHHHH
T ss_conf             99589998952899899999999986798699973389999999999999998649998999---378388777999999


Q ss_pred             CCCCCCCCEEEEEEC
Q ss_conf             857689959999924
Q gi|254780476|r   71 DSELQEIPVIAVTAF   85 (123)
Q Consensus        71 ~~~~~~ipii~~t~~   85 (123)
                      .   ..+|+|.+-+.
T Consensus       106 ~---~~~P~i~IPTt  117 (366)
T PRK09423        106 Y---LGVPVVIVPTI  117 (366)
T ss_pred             H---CCCCEEEECCC
T ss_conf             8---28997995686


No 140
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=79.41  E-value=5.6  Score=20.64  Aligned_cols=66  Identities=17%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCC---CHH-------------------HHHHHHHHCCCCCCCCEEEEE--ECCCHH
Q ss_conf             97999999982799899995041296---959-------------------999999828576899599999--249989
Q gi|254780476|r   34 NGMEALELARQHKPDVIIMDIQLQEI---SGL-------------------EITKQIKEDSELQEIPVIAVT--AFAMKG   89 (123)
Q Consensus        34 ~g~eal~~l~~~~~dlillD~~mp~~---dG~-------------------el~~~ir~~~~~~~ipii~~t--~~~~~~   89 (123)
                      +..||.++++++ |+++|+|+.-|..   .|.                   +++.++.+.. .++.||+++-  +.-...
T Consensus         2 tp~eA~e~L~~~-~~~~lIDVRt~~E~~~~G~ipga~~I~~~~~~~~~~~~~f~~~l~~~~-~~d~~ivv~C~sG~RS~~   79 (117)
T cd01522           2 TPAEAWALLQAD-PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKV-GKDRPVLLLCRSGNRSIA   79 (117)
T ss_pred             CHHHHHHHHHHC-CCEEEEECCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHC-CCCCEEEEECCCCCHHHH
T ss_conf             989999999849-983999899889998629888851120343112245812789999745-999869998899815999


Q ss_pred             HHHHHHHCCCCE
Q ss_conf             999999769988
Q gi|254780476|r   90 DEERIRKGGCEA  101 (123)
Q Consensus        90 ~~~~~~~~g~~~  101 (123)
                      ......+.|+..
T Consensus        80 Aa~~L~~~Gf~n   91 (117)
T cd01522          80 AAEAAAQAGFTN   91 (117)
T ss_pred             HHHHHHHCCCCC
T ss_conf             999999859877


No 141
>PRK09482 xni exonuclease IX; Provisional
Probab=79.38  E-value=5.6  Score=20.64  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=51.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH-HHHHHHCCCCEEEEEEECCCCC---HHHHHHHHHHCCCCCC
Q ss_conf             98778995399899999999999789899998897999-9999827998999950412969---5999999982857689
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEIS---GLEITKQIKEDSELQE   76 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~ea-l~~l~~~~~dlillD~~mp~~d---G~el~~~ir~~~~~~~   76 (123)
                      ||+|+|+||-+....+.+-. +.+.+...-.......+ .+++++++|+-+++=+.-+...   =.++...-|++..  .
T Consensus         1 Mm~~llLIDG~~l~~Ray~a-~p~~~~~~~~~~~~~~~l~kli~~~~P~~i~v~fD~~~~~~~fR~e~~~~YKanR~--~   77 (256)
T PRK09482          1 MMNHLLIIDALNLIRRIHAV-QPSPNDIAACVETCQHALDKLIRHSQPTHAVAVFDGDERSSGWRHQLLPDYKAGRK--P   77 (256)
T ss_pred             CCCCEEEECCCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCC--C
T ss_conf             99728998462899999843-77899988678999999999999719987999984799876537776488760999--9


Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             959999924998999999976998899879898999999999
Q gi|254780476|r   77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        77 ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      .|=-+..  ..+...+-+...|+.-+-..-+..+.+..++.+
T Consensus        78 ~pd~L~~--Q~~~i~~~l~~~gi~~~~~~g~EADDiIatla~  117 (256)
T PRK09482         78 MPEALAQ--GLPAIRAAFEELGIDSWLADGNEADDLIATLAV  117 (256)
T ss_pred             CCHHHHH--HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf             9989999--999999999977998983578148899999999


No 142
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=78.46  E-value=5.9  Score=20.47  Aligned_cols=100  Identities=13%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             8778995399899999999999789--89999889799999998279989999504129695999999982857689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      +.++++.++|+...+.+.++-+.||  |.+....+...-++-+++   .=+++-+.|=+.+=-++...||....  .-|+
T Consensus        31 A~~i~l~~~D~~~~etv~~V~~rwGG~F~~e~~~~~~~~ir~~k~---~G~vVHLTMYG~~i~~~~~~Ir~~~~--~~~i  105 (175)
T PRK03958         31 ADKILFASEDEHVKESVEDIVERWGGPFKVEVTKSWKKYIREFKD---GGIVVHLTMYGENINDVMDEIREAKT--CKPL  105 (175)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHCCC--CCCE
T ss_conf             876787688766899999999861896699976897999863025---88899983688866787767653057--8878


Q ss_pred             EEEE-ECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             9999-249989999999769988998798
Q gi|254780476|r   80 IAVT-AFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        80 i~~t-~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      +++. +.--+.+.-+..+..+ +.=+.|-
T Consensus       106 lvVVGaeKVP~evyelADyNV-aVgNQPH  133 (175)
T PRK03958        106 LIIVGAEKVPREVYELADYNV-AVGNQPH  133 (175)
T ss_pred             EEEECCCCCCHHHHHHCCCCE-EECCCCC
T ss_conf             999678869988974345415-5178870


No 143
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=78.44  E-value=6  Score=20.47  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             HHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEE------EECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHH
Q ss_conf             99999997898999-98897999999982799899995------041296959999999828576899599999249989
Q gi|254780476|r   17 LFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMD------IQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKG   89 (123)
Q Consensus        17 ~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD------~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~   89 (123)
                      -+-+.....+..+. -+++-+||+...+.. +|+|=.-      ..-+....|++++++++.    .+|||+=-....+.
T Consensus        83 ~lv~~i~~~~~l~MAD~st~eea~~A~~~G-~D~I~TTL~GYT~~t~~~~pD~~ll~~l~~~----~~pvIaEGri~tPe  157 (192)
T pfam04131        83 SFIKRIKEKGQLAMADCSTFEEGLNAHKLG-VDIVGTTLSGYTGGSNPAEPDFQLVKTLSEA----GCFVIAEGRYNTPE  157 (192)
T ss_pred             HHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCHHHHHHHHHC----CCCEEEECCCCCHH
T ss_conf             999999981998899749999999999859-9999823255789999999978999999868----99399857989999


Q ss_pred             HHHHHHHCCCCEEEECC
Q ss_conf             99999976998899879
Q gi|254780476|r   90 DEERIRKGGCEAYISKP  106 (123)
Q Consensus        90 ~~~~~~~~g~~~~l~KP  106 (123)
                      ...++++.|+...+.=-
T Consensus       158 ~a~~a~~~GA~aVVVGs  174 (192)
T pfam04131       158 LAKKAIEIGADAVTVGS  174 (192)
T ss_pred             HHHHHHHCCCCEEEECC
T ss_conf             99999983998999896


No 144
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=78.40  E-value=6  Score=20.46  Aligned_cols=65  Identities=26%  Similarity=0.405  Sum_probs=43.2

Q ss_pred             HHHHHHHHCC-CCEEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             9999998279-989999504129-695--9999999828576899599999249989999999769988998
Q gi|254780476|r   37 EALELARQHK-PDVIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        37 eal~~l~~~~-~dlillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      +.++.+.+.. -.++++|+.--+ +.|  +++++++++.   .++|+++--+-...++..+..+.|+++.+.
T Consensus       151 ~~i~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~---~~~pii~~GGv~~~~di~~l~~~g~~gviv  219 (229)
T pfam00977       151 EWAKKLEELGAGEILLTDIDRDGTLSGPDLELTRELAEA---VNIPVIASGGVGSLEDLKELFSEGVDGVIA  219 (229)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             445677651675068877504275666899999999976---899899985899999999999879989998


No 145
>PRK13118 consensus
Probab=78.37  E-value=6  Score=20.45  Aligned_cols=48  Identities=13%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             99999998285768995999992499------899999997699889987989899
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAM------KGDEERIRKGGCEAYISKPISLSI  111 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~------~~~~~~~~~~g~~~~l~KPi~~~~  111 (123)
                      |++++++|+.  ..++|++++|.++.      +....++.+.|+++.+.--+.+++
T Consensus        82 ~~~v~~~r~~--~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~ee  135 (269)
T PRK13118         82 LQMVREFRQG--DQTTPVVLMGYLNPIEIYGYERFVAQAKEAGVDGLILVDLPPEE  135 (269)
T ss_pred             HHHHHHHHHC--CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf             9999998643--89999899740007878639999999998599746458999789


No 146
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.35  E-value=6  Score=20.45  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=52.2

Q ss_pred             CCEEEEEC--CCHHHH---HHHHHHHHHCCCEEEEECCHHHHHH-----HHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             87789953--998999---9999999978989999889799999-----9982799899995041296959999999828
Q gi|254780476|r    2 LKKVMIVE--DNELNM---KLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         2 ~kkiLiVD--D~~~~~---~~l~~~l~~~g~~v~~a~~g~eal~-----~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      +|||+||=  +++...   +.+.++|+..|+++....++.+...     ....+.+|+++.=    +.|| .+++..|..
T Consensus         3 lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l----GGDG-T~L~aar~~   77 (304)
T PRK02645          3 LKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIVL----GGDG-TVLAAARHL   77 (304)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE----CCCH-HHHHHHHHH
T ss_conf             45999998589999999999999999988899998444344477762001446688899997----8688-999999985


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf             57689959999924998999999976998899879898
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL  109 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~  109 (123)
                       ...++||+.+...            |--+||+.|.+.
T Consensus        78 -~~~~iPilGiN~~------------G~lGFLte~~~~  102 (304)
T PRK02645         78 -APHDIPILSFNVG------------GHLGFLTHPRDL  102 (304)
T ss_pred             -CCCCCCEEEEECC------------CEEEEECCCCCC
T ss_conf             -4269988998248------------646971676422


No 147
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.05  E-value=6.1  Score=20.40  Aligned_cols=83  Identities=14%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             HHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-------CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHH
Q ss_conf             9999997898999-988979999999827998999950412-------96959999999828576899599999249989
Q gi|254780476|r   18 FRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQ-------EISGLEITKQIKEDSELQEIPVIAVTAFAMKG   89 (123)
Q Consensus        18 l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp-------~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~   89 (123)
                      +.+.++..|..+. .+.+.++|.+..+. -+|.|+.--.=.       ..+-+.++.++|+..   ++|||+=-+-....
T Consensus        94 ~v~~l~~~g~~v~~~v~s~~~A~~a~~~-GaD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~---~ipviaAGGI~~g~  169 (236)
T cd04730          94 VVERLKAAGIKVIPTVTSVEEARKAEAA-GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGR  169 (236)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH---CCCEEEECCCCCHH
T ss_conf             9999998299899958989999999981-8998999777777788987555677999999982---98689654627789


Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             999999769988998
Q gi|254780476|r   90 DEERIRKGGCEAYIS  104 (123)
Q Consensus        90 ~~~~~~~~g~~~~l~  104 (123)
                      +...++.+|+++...
T Consensus       170 ~i~aal~lGA~gV~~  184 (236)
T cd04730         170 GIAAALALGADGVQM  184 (236)
T ss_pred             HHHHHHHHCCCEEEE
T ss_conf             999999808979995


No 148
>PRK13337 putative lipid kinase; Reviewed
Probab=77.94  E-value=6.2  Score=20.38  Aligned_cols=77  Identities=21%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             CCCEEEEECCC-------HHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHH---HCCCCEEEEEEECCCCCH--HHHHH
Q ss_conf             98778995399-------89999999999978989999--889799999998---279989999504129695--99999
Q gi|254780476|r    1 MLKKVMIVEDN-------ELNMKLFRDLIETSGYIALQ--TRNGMEALELAR---QHKPDVIIMDIQLQEISG--LEITK   66 (123)
Q Consensus         1 m~kkiLiVDD~-------~~~~~~l~~~l~~~g~~v~~--a~~g~eal~~l~---~~~~dlillD~~mp~~dG--~el~~   66 (123)
                      ||||++++-+-       ....+.+...|+..|+++..  .....+|.+.++   .+.+|+|+.=    +-||  -|++.
T Consensus         1 mmkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~T~~~g~a~~~a~~~~~~~~d~vv~~----GGDGTv~evvn   76 (305)
T PRK13337          1 MMKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAARQAAERNFDLVIAA----GGDGTLNEVVN   76 (305)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE----ECCHHHHHHHH
T ss_conf             98459999997568864677899999999987996999982780289999999877799989999----57628999999


Q ss_pred             HHHHCCCCCCCCEEEEE
Q ss_conf             99828576899599999
Q gi|254780476|r   67 QIKEDSELQEIPVIAVT   83 (123)
Q Consensus        67 ~ir~~~~~~~ipii~~t   83 (123)
                      .+...+  ...|+=++-
T Consensus        77 gl~~~~--~~~~lgiiP   91 (305)
T PRK13337         77 GLAEKE--NRPKLGIIP   91 (305)
T ss_pred             HHHCCC--CCCEEEEEE
T ss_conf             985589--986289970


No 149
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=77.50  E-value=6.4  Score=20.31  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=55.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHH--HCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             877899539989999999999978989999-889799999998--27998999950412969599999998285768995
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELAR--QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~--~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      ++++..||-|....+.++..++..++.-.. ..+....+....  .++||+|++|=--....--+++..|.+..-+..--
T Consensus        66 A~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l~~~~  145 (181)
T pfam03602        66 ASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLDPPYAKGLIEEALELLAEKGWLNPNA  145 (181)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf             98899996999999999999998589977998108999987533578887663599754206999999999666657980


Q ss_pred             EEEEE
Q ss_conf             99999
Q gi|254780476|r   79 VIAVT   83 (123)
Q Consensus        79 ii~~t   83 (123)
                      +|++-
T Consensus       146 iiiiE  150 (181)
T pfam03602       146 LIVVE  150 (181)
T ss_pred             EEEEE
T ss_conf             99999


No 150
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=76.71  E-value=6.7  Score=20.18  Aligned_cols=86  Identities=28%  Similarity=0.331  Sum_probs=55.0

Q ss_pred             CEEEEECCCH----HHHHHHHHHHHHCCCEEEEE---------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             7789953998----99999999999789899998---------8979999999827998999950412969599999998
Q gi|254780476|r    3 KKVMIVEDNE----LNMKLFRDLIETSGYIALQT---------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK   69 (123)
Q Consensus         3 kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~a---------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir   69 (123)
                      ||+|||-|..    -..+-+.+.|+..|.++...         ++..++.+.++++.||.|+-   +-+.+-.++++.+.
T Consensus        30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa---lGGGS~~D~AK~i~  106 (377)
T COG1454          30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA---LGGGSVIDAAKAIA  106 (377)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHHH
T ss_conf             715999798631106699999998744982899568899998889999999998169998999---77930878999999


Q ss_pred             ---HCC------------CCCCCCEEEEEECCCHHHH
Q ss_conf             ---285------------7689959999924998999
Q gi|254780476|r   70 ---EDS------------ELQEIPVIAVTAFAMKGDE   91 (123)
Q Consensus        70 ---~~~------------~~~~ipii~~t~~~~~~~~   91 (123)
                         .++            .....|+|.+.+-...+.+
T Consensus       107 ~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSE  143 (377)
T COG1454         107 LLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSE  143 (377)
T ss_pred             HHHHCCCHHHHHCCCCCCCCCCCCEEEECCCCCCHHH
T ss_conf             9960874066640556666789987982699863153


No 151
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.94  E-value=7  Score=20.05  Aligned_cols=98  Identities=12%  Similarity=0.235  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf             999999999978989-9998897999999982-79989999504129695999999982857689959999924998999
Q gi|254780476|r   14 NMKLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE   91 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~   91 (123)
                      .+.-+.++|+..+.. +....+.++|..+++. ..=.+=++.+.|-.-++++..+.+++..  .++ +|..-+-...++.
T Consensus         4 ~~~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~--p~~-~vGaGTV~~~e~~   80 (212)
T PRK05718          4 WKTQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEV--PEA-LIGAGTVLNPEQL   80 (212)
T ss_pred             HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEEECCHHHH
T ss_conf             4636999997698799997489999999999999879978999578961999999999758--981-7965331348899


Q ss_pred             HHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             999976998899879898999999
Q gi|254780476|r   92 ERIRKGGCEAYISKPISLSIFMET  115 (123)
Q Consensus        92 ~~~~~~g~~~~l~KPi~~~~L~~~  115 (123)
                      .++.++|++ |+.-|....++.+.
T Consensus        81 ~~a~~aGA~-FiVSP~~~~~v~~~  103 (212)
T PRK05718         81 AQAIEAGAQ-FIVSPGLTPPLLKA  103 (212)
T ss_pred             HHHHHCCCC-EEECCCCCHHHHHH
T ss_conf             999984998-99848998999999


No 152
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=75.83  E-value=7.1  Score=20.04  Aligned_cols=116  Identities=15%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             CCEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87789953998----9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .|+|-++.++.    .....++..++..|.++..       ..+-...+..+++..||+|++-.  ..-++..+++++++
T Consensus       135 ~~~vai~~~~~~~g~~~~~~~~~~l~~~g~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~--~~~~~~~~~~~~~~  212 (334)
T cd06342         135 AKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGG--YYPEAGPLVRQMRQ  212 (334)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHH
T ss_conf             9689999156554455799999999974983999996588766657899999865999999926--75589999999997


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHH
Q ss_conf             85768995999992499899999997699889987989-------8999999999740
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS-------LSIFMETIKKYIG  121 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-------~~~L~~~i~~~l~  121 (123)
                      ..-  +.|++..++...+......-+..-..|..-|..       .+.+.+..++..+
T Consensus       213 ~g~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g  268 (334)
T cd06342         213 LGL--KAPFMGGDGLCDPEFIKIAGDAAEGTYATFPGGPLEKMPAGKAFVARYKAKFG  268 (334)
T ss_pred             CCC--CCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             699--97599967778789998645754581899404766689889999999999848


No 153
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=75.73  E-value=7.1  Score=20.02  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=57.0

Q ss_pred             CEEEEECCCHHHHHHHHHH--H--HHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE----ECCCCCHH--------HHHH
Q ss_conf             7789953998999999999--9--97898999988979999999827998999950----41296959--------9999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDL--I--ETSGYIALQTRNGMEALELARQHKPDVIIMDI----QLQEISGL--------EITK   66 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~--l--~~~g~~v~~a~~g~eal~~l~~~~~dlillD~----~mp~~dG~--------el~~   66 (123)
                      +|||.|--++...++-.+.  |  ...++.+....+-++.++.+...+|+++++|-    ..|+.+|.        |.+.
T Consensus       111 ~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~i~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca~  190 (372)
T cd01121         111 GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTA  190 (372)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             93899824567899998999858788772788435699999999971998899956220203776779987899999999


Q ss_pred             HHHHCCCCCCCCEEEEE
Q ss_conf             99828576899599999
Q gi|254780476|r   67 QIKEDSELQEIPVIAVT   83 (123)
Q Consensus        67 ~ir~~~~~~~ipii~~t   83 (123)
                      .+-+-.+..++|++++-
T Consensus       191 ~L~~~AK~~~i~~~lVG  207 (372)
T cd01121         191 ELMRFAKERNIPIFIVG  207 (372)
T ss_pred             HHHHHHHHCCCEEEEEE
T ss_conf             99999986197399998


No 154
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=75.46  E-value=7.2  Score=19.98  Aligned_cols=75  Identities=13%  Similarity=0.200  Sum_probs=49.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEEEEE--CCCCCHH--HHHHHHHHCCCCCC
Q ss_conf             78995399899999999999789899998897---99999998279989999504--1296959--99999982857689
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQHKPDVIIMDIQ--LQEISGL--EITKQIKEDSELQE   76 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g---~eal~~l~~~~~dlillD~~--mp~~dG~--el~~~ir~~~~~~~   76 (123)
                      |||+||.-...-..+.+.|...|..+....+-   ...++.+ ...||.|++.=.  -|...|.  ++.+.+   . ...
T Consensus         2 rILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~-~~~~dgIILSpGPg~P~~~~~~~~~i~~~---~-~~~   76 (221)
T PRK07765          2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAV-AAGFDGVLLSPGPGTPERAGASIDMVRAC---A-AAG   76 (221)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-HCCCCEEEECCCCCCHHHCCCCHHHHHHH---H-CCC
T ss_conf             799993889339999999987799189998998998899876-34899899969999801167248899875---3-259


Q ss_pred             CCEEEEE
Q ss_conf             9599999
Q gi|254780476|r   77 IPVIAVT   83 (123)
Q Consensus        77 ipii~~t   83 (123)
                      +||+.+-
T Consensus        77 iPILGIC   83 (221)
T PRK07765         77 TPLLGVC   83 (221)
T ss_pred             CCEEEEE
T ss_conf             9889870


No 155
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=75.34  E-value=7.3  Score=19.96  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             EEEECCCHHHHH----HHHHHHHHCCCEE---EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             899539989999----9999999789899---998897999999982799899995041296959999999828576899
Q gi|254780476|r    5 VMIVEDNELNMK----LFRDLIETSGYIA---LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         5 iLiVDD~~~~~~----~l~~~l~~~g~~v---~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
                      |||=|+.-....    .+++.=+..++..   .+++|-+|+.+.+... +|+|++|=.-    --++-+.++.. ....-
T Consensus       161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag-aDiImLDNm~----~e~~~~av~~l-~~~~~  234 (280)
T COG0157         161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG-ADIIMLDNMS----PEELKEAVKLL-GLAGR  234 (280)
T ss_pred             EEEHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC-CCEEEECCCC----HHHHHHHHHHH-CCCCC
T ss_conf             776044788753599999999975899862899749999999999749-9999976999----99999999974-44776


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             5999992499899999997699889
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      .++-.||.-..+......+.|++-+
T Consensus       235 ~~lEaSGgIt~~ni~~yA~tGVD~I  259 (280)
T COG0157         235 ALLEASGGITLENIREYAETGVDVI  259 (280)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             6999758978778999862699799


No 156
>PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed
Probab=75.32  E-value=4.4  Score=21.21  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=29.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             98778995399899999999999789899998
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQT   32 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a   32 (123)
                      ||+||+++-.|+.=.+-++.+|+..|+++...
T Consensus         1 Mm~ki~~aT~N~~K~~E~~~il~~~~~~i~~~   32 (197)
T PRK00120          1 MMKKLVLASHNAGKLRELAALLAPFGLEVVSQ   32 (197)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEH
T ss_conf             98639999298679999999887659889757


No 157
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=75.08  E-value=7.4  Score=19.92  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHHHHCC----CCEE------------EEEEECCCCCH-
Q ss_conf             953998999999999997898999988--------9799999998279----9899------------99504129695-
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQTR--------NGMEALELARQHK----PDVI------------IMDIQLQEISG-   61 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~a~--------~g~eal~~l~~~~----~dli------------llD~~mp~~dG-   61 (123)
                      +||..+...+.....++..|+.+....        ...+..+.+....    ++.-            ......|-+.| 
T Consensus        18 LvDSe~~~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv   97 (222)
T PRK10826         18 LIDSEPLWQRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPDRQEVVQRIIARVISLIEETRPLLPGV   97 (222)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             33489999999999999879899979999997198899999999986788898899999999999999986269818669


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf             999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY  119 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~  119 (123)
                      .++++.+|+.    .+|+-+.|++............|..+|+           .|| +|+-++.++++.
T Consensus        98 ~e~L~~l~~~----g~~l~i~Ts~~~~~~~~~L~~~gl~~~Fd~iv~~ddv~~~KP-~Pe~yl~A~~~l  161 (222)
T PRK10826         98 REALALCKAQ----GLKIGLASASPLHMLEAVLTMLDLRDYFDALASAEKLPYSKP-HPEVYLNCAAKL  161 (222)
T ss_pred             HHHHHHHHHC----CCCEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CHHHHHHHHHHH
T ss_conf             9999999977----997588628848999999987499641105763532567799-849999999995


No 158
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.94  E-value=7.5  Score=19.90  Aligned_cols=56  Identities=11%  Similarity=0.110  Sum_probs=47.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             98778995399899999999999789899998897999999982799899995041
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL   56 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~m   56 (123)
                      |.|.|||.--+.-.=..+...|...|+.|.......+.++.+..+....+.+|+.=
T Consensus         3 m~K~vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d   58 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGLEAFYLDYAE   58 (277)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCC
T ss_conf             98689992568699999999999879999999799999999984898199972667


No 159
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.66  E-value=7.6  Score=19.86  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             999988979999999827998999950412969599999998285768995999992499899999997699889
Q gi|254780476|r   28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        28 ~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      -..++.+-+|+.+.+... +|.|.+|- |.-.+=-+..+.+++.. .+.-..+-.||.-..+...+..+.|++.+
T Consensus       186 IeVEv~~lee~~~a~~~g-~d~I~LDn-~s~e~~~~~v~~l~~~~-~~~~v~ieaSGGI~~~ni~~ya~tGVD~I  257 (279)
T PRK08385        186 VEVEVESLEDALKAAKAG-ADIIMLDN-MTPEEIREVIEALKELG-LREKVKIEVSGGITPETIAEYAKLDVDVI  257 (279)
T ss_pred             EEEEECCHHHHHHHHHCC-CCEEEECC-CCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             899709899999999769-99999849-99999999999987507-68978999978998999999985598999


No 160
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.21  E-value=7.8  Score=19.79  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             989999889799999998279989999504129-695999999982857689959999924998999999976998899
Q gi|254780476|r   26 GYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        26 g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      ||.-.+..+..++++.+...--.+++.|+.--+ ++|++.+.+..     .+.|+++--+-...++..+..+.|+++.+
T Consensus       136 gw~~~~~~~~~~~~~~~~~~~~~ii~tdI~~dGt~~G~~~~~~~~-----~~~~iiasGGv~s~~Dl~~l~~~g~~gvi  209 (228)
T PRK04128        136 GWLEESSIKVEDAYKMLRNYVNRFIYTSIERDGTLTGIENIERFW-----GDEEFIYAGGVSSIEDVKKLAEIGFSGAI  209 (228)
T ss_pred             CCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHC-----CCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             848889988999999998638453763126543003889999861-----68968987898999999999967998999


No 161
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950    This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=73.75  E-value=8  Score=19.73  Aligned_cols=55  Identities=15%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE-----------EECCCCHHHHHHHHHHH
Q ss_conf             9599999998285768995999992499899999997699889-----------98798989999999997
Q gi|254780476|r   60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY-----------ISKPISLSIFMETIKKY  119 (123)
Q Consensus        60 dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~-----------l~KPi~~~~L~~~i~~~  119 (123)
                      +-.+++.++|+..    ..+-++|......-.++...+|+.+|           +.|| .|+.|..++++.
T Consensus       117 ~~~~~L~~LR~~G----y~Lg~iT~G~~~~Q~eKl~~lg~~~fFD~V~~s~e~g~~KP-hP~IF~~Al~~~  182 (244)
T TIGR02253       117 DVVDTLMELRESG----YRLGLITDGLTVKQWEKLERLGIRDFFDAVITSEELGVEKP-HPKIFYAALRRL  182 (244)
T ss_pred             CHHHHHHHHHHCC----CEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHHHH
T ss_conf             6889999998647----78899866877899999998277535770572244477697-858999999970


No 162
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=73.71  E-value=8  Score=19.72  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEE-------ECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             8999999999997898999-988979999999827998999950-------41296959999999828576899599999
Q gi|254780476|r   12 ELNMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDI-------QLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~-------~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      ....++++.+-+..+..+. -+++-+||+...+.. +|+|=.-+       .-+....|++++++++.-   .+|+|+=-
T Consensus       109 ~~l~~~i~~i~~~~~~l~MAD~st~ee~~~A~~~G-~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~---~~pvIaEG  184 (219)
T cd04729         109 ETLAELIKRIHEEYNCLLMADISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEG  184 (219)
T ss_pred             CCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEEC
T ss_conf             78999999999986977887548899999999849-989970214567787889998789999999975---99399706


Q ss_pred             ECCCHHHHHHHHHCCCCEEEEC
Q ss_conf             2499899999997699889987
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISK  105 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~K  105 (123)
                      ....+....+++++|+...+.=
T Consensus       185 ri~tPe~a~~a~~~GA~aVVVG  206 (219)
T cd04729         185 RINSPEQAAKALELGADAVVVG  206 (219)
T ss_pred             CCCCHHHHHHHHHCCCCEEEEC
T ss_conf             9899999999998399899989


No 163
>PRK08017 short chain dehydrogenase; Provisional
Probab=73.40  E-value=8.2  Score=19.67  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=47.4

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             987789953998999999999997898999988979999999827998999950412
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ   57 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp   57 (123)
                      |.|.|||.=-..-.=..+...|...|+.|..+....+.++.+.+..+..+.+|+.=+
T Consensus         1 M~K~vlITGassGIG~a~A~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~D~~~~   57 (256)
T PRK08017          1 MQKSVLITGCSSGIGLESALELKRQGFRVLAGCRKPDDVARMNSMGFTGVLIDLDSP   57 (256)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCH
T ss_conf             997899965876899999999998799999996998999999856994699835898


No 164
>PRK00811 spermidine synthase; Provisional
Probab=72.93  E-value=8.4  Score=19.61  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHH
Q ss_conf             7789953998999999999997898------999-9889799999998279989999504129695-----999999982
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGY------IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKE   70 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~------~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~   70 (123)
                      ++|-+||=|+...+.-+++|..+..      .+. ...+|...++. ..+.||+|++|..=|..-+     -++.+.+++
T Consensus       103 ~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~-~~~~yDvII~D~tDP~gpa~~Lft~~Fy~~~~~  181 (283)
T PRK00811        103 EKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRE-TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKR  181 (283)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf             6799994689999999998388631330297159982789999984-523554899808998864455345999999998


Q ss_pred             CCCCCCCCEEEE
Q ss_conf             857689959999
Q gi|254780476|r   71 DSELQEIPVIAV   82 (123)
Q Consensus        71 ~~~~~~ipii~~   82 (123)
                      .  ++.--|++.
T Consensus       182 ~--L~~~Gi~v~  191 (283)
T PRK00811        182 A--LKEGGIFVA  191 (283)
T ss_pred             H--CCCCCEEEE
T ss_conf             5--399958999


No 165
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724   ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type  and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution.    This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=72.88  E-value=8  Score=19.73  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=37.7

Q ss_pred             HHHHHHHCCCCEEEEEE-ECCCCCH----HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             99999827998999950-4129695----99999998285768995999992499899999997
Q gi|254780476|r   38 ALELARQHKPDVIIMDI-QLQEISG----LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK   96 (123)
Q Consensus        38 al~~l~~~~~dlillD~-~mp~~dG----~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~   96 (123)
                      |.+.+++..+|++|||= +-|-.=|    =|+.+.|++.|...+   |++|+..-+.+....-+
T Consensus       106 a~~~~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~~kp~~~~---vvlTGR~aP~~L~~~AD  166 (191)
T TIGR00708       106 AKEVLADSEYDLVLLDELTVALKFGYLDVEEVVEVLQEKPKSQH---VVLTGRGAPQELVELAD  166 (191)
T ss_pred             HHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCCE---EEEECCCCCHHHHHHCC
T ss_conf             99986498877640342345553489788999999855845677---88866878688997515


No 166
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.32  E-value=8.7  Score=19.53  Aligned_cols=80  Identities=15%  Similarity=0.304  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHCCCC-EEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE------
Q ss_conf             79999999827998-9999504129-695--9999999828576899599999249989999999769988998------
Q gi|254780476|r   35 GMEALELARQHKPD-VIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS------  104 (123)
Q Consensus        35 g~eal~~l~~~~~d-lillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~------  104 (123)
                      ..+.++.+.+..+. +++.|+.--+ +.|  +++++++++.   .++|+++--+-...++..+..+.|+++.+.      
T Consensus       150 ~~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~i~~~---~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~~  226 (240)
T PRK13585        150 PVEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRELVDS---VDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALYK  226 (240)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHC
T ss_conf             55777888863873589864233223257898999999986---899999988999999999999789978998768767


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             7989899999999
Q gi|254780476|r  105 KPISLSIFMETIK  117 (123)
Q Consensus       105 KPi~~~~L~~~i~  117 (123)
                      .-++.++..+.++
T Consensus       227 g~i~l~e~~~~~~  239 (240)
T PRK13585        227 GKFTLEEALEAAE  239 (240)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9978999999964


No 167
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.84  E-value=8.9  Score=19.46  Aligned_cols=99  Identities=13%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             HHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC--EEEEEECCCHHHH
Q ss_conf             9999999978989-9998897999999982-7998999950412969599999998285768995--9999924998999
Q gi|254780476|r   16 KLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP--VIAVTAFAMKGDE   91 (123)
Q Consensus        16 ~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip--ii~~t~~~~~~~~   91 (123)
                      +-+-+.|+..+.. +....+.++|+..++. ..-.+=.+.+.|-.-+.++..+.+++..  ++-|  +|..-+--..++.
T Consensus         4 ~~il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~--~~~p~~~iGaGTV~~~e~~   81 (209)
T PRK06552          4 SEILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERY--KDDPEVLIGAGTVLDAVTA   81 (209)
T ss_pred             HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH--CCCCCEEEEEECCCCHHHH
T ss_conf             99999999799799997289999999999999879988999678975999999999981--7799818988727489999


Q ss_pred             HHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             99997699889987989899999999
Q gi|254780476|r   92 ERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        92 ~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      +++.++|++ |+.-|.-..++.+.-+
T Consensus        82 ~~a~~aGA~-FiVSP~~~~~v~~~a~  106 (209)
T PRK06552         82 RQAILAGAQ-FIVSPSFNRETAKICN  106 (209)
T ss_pred             HHHHHCCCC-EEECCCCCHHHHHHHH
T ss_conf             999985998-8976999899999999


No 168
>PRK07053 glutamine amidotransferase; Provisional
Probab=71.51  E-value=4.5  Score=21.18  Aligned_cols=81  Identities=11%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             CCCEEEEECCC-HHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCC-EEEEEEECCCCCH------HHHHHHHHHC
Q ss_conf             98778995399-8999999999997898999988979-999999827998-9999504129695------9999999828
Q gi|254780476|r    1 MLKKVMIVEDN-ELNMKLFRDLIETSGYIALQTRNGM-EALELARQHKPD-VIIMDIQLQEISG------LEITKQIKED   71 (123)
Q Consensus         1 m~kkiLiVDD~-~~~~~~l~~~l~~~g~~v~~a~~g~-eal~~l~~~~~d-lillD~~mp~~dG------~el~~~ir~~   71 (123)
                      |||||||+--. ...--.+...|+..|+.+....-.. +.+ --.-..+| +|++.-.|.--+-      -+..+-||+.
T Consensus         1 mmk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~-p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a   79 (235)
T PRK07053          1 MMKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLE-VLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQR   79 (235)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99539999689988986999999978995999967889889-99966679999938998988776685589999999999


Q ss_pred             CCCCCCCEEEEE
Q ss_conf             576899599999
Q gi|254780476|r   72 SELQEIPVIAVT   83 (123)
Q Consensus        72 ~~~~~ipii~~t   83 (123)
                       -...+|++.+-
T Consensus        80 -~~~~~PvLGIC   90 (235)
T PRK07053         80 -LAAGLPTLGIC   90 (235)
T ss_pred             -HHCCCCEEEEC
T ss_conf             -98699889984


No 169
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems.  The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=71.10  E-value=9.3  Score=19.36  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             CCEEE-EECCCHH---HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87789-9539989---9999999999789899998-------89799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVM-IVEDNEL---NMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiL-iVDD~~~---~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .|||- +.+|++.   ..+.++..++..|.++...       .+-...+..+++..||+|++-  ....++..++++.++
T Consensus       136 ~~~vaiv~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~i~~i~~~~~d~v~~~--~~~~~~~~~~~~~~~  213 (299)
T cd04509         136 WKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLC--GSGEDAATILKQAAE  213 (299)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHH
T ss_conf             977999557740679999999999998799799998469999899999999996699999990--771899999999997


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             8576899599999249989999999769988998798
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      ..-....|++..++...........+..-..+..-|.
T Consensus       214 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~  250 (299)
T cd04509         214 AGLTGGYPILGITLGLSDVLLEAGGEAAEGVLTGTPY  250 (299)
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf             5998897399956767889999788872876999735


No 170
>PRK11823 DNA repair protein RadA; Provisional
Probab=70.52  E-value=9.6  Score=19.29  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             CEEEEECCCHHHHHHHHHH--H--HHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE----ECCCCCHH--------HHHH
Q ss_conf             7789953998999999999--9--97898999988979999999827998999950----41296959--------9999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDL--I--ETSGYIALQTRNGMEALELARQHKPDVIIMDI----QLQEISGL--------EITK   66 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~--l--~~~g~~v~~a~~g~eal~~l~~~~~dlillD~----~mp~~dG~--------el~~   66 (123)
                      +++|.|--++...++-.+.  |  ...++.+....+-+..++.+.+.+|+++++|-    ..|+.+|.        +.+.
T Consensus       118 ~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~  197 (454)
T PRK11823        118 GKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAA  197 (454)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHH
T ss_conf             95799815015789999999758888873788536899999999860998899943111541566778997899999999


Q ss_pred             HHHHCCCCCCCCEEEEE
Q ss_conf             99828576899599999
Q gi|254780476|r   67 QIKEDSELQEIPVIAVT   83 (123)
Q Consensus        67 ~ir~~~~~~~ipii~~t   83 (123)
                      .+-+-.+.+++|++++-
T Consensus       198 ~L~~~AK~~~i~~~lVG  214 (454)
T PRK11823        198 ELTRLAKQSGIAVFLVG  214 (454)
T ss_pred             HHHHHHHHCCCCEEEEE
T ss_conf             99999974498289999


No 171
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=70.23  E-value=9.7  Score=19.25  Aligned_cols=102  Identities=16%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             HHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99999--99999789899998897--99999998279989999504129695-----99999998285768995999992
Q gi|254780476|r   14 NMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        14 ~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      ..+.+  .+.|-..||.|....+.  .-|.++..-  =-..++=+.-|-.+|     .+.++.|++..   ++|||+=-+
T Consensus       109 ~~eTl~Aae~Lv~~GF~VlpY~~~D~v~akrLe~~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIVDAG  183 (248)
T cd04728         109 PIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA--GCAAVMPLGSPIGSGQGLLNPYNLRIIIERA---DVPVIVDAG  183 (248)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC
T ss_conf             68999999999988998978678899999999974--9534520456434798879999999999847---998898479


Q ss_pred             CCCHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf             499899999997699889987-----989899999999974
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAYISK-----PISLSIFMETIKKYI  120 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l  120 (123)
                      -..+.+..+++++|+++.|.-     --++-.+-+.++.++
T Consensus       184 iG~pS~Aa~aMElG~daVL~NTAIA~A~dPv~MA~A~~~AV  224 (248)
T cd04728         184 IGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV  224 (248)
T ss_pred             CCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99756789998726553345468771699899999999999


No 172
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=70.19  E-value=9.7  Score=19.24  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=52.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHC-CCCEEEEEEECCCCCH--HHHHHHHHHCCCCC
Q ss_conf             877899539989999999999978989--99-988979999999827-9989999504129695--99999998285768
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYI--AL-QTRNGMEALELARQH-KPDVIIMDIQLQEISG--LEITKQIKEDSELQ   75 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~--v~-~a~~g~eal~~l~~~-~~dlillD~~mp~~dG--~el~~~ir~~~~~~   75 (123)
                      +++++.||-|.....++++.++..+++  +. ...+...++..+... +||+|++|=-...--.  ...+..+.+..-++
T Consensus        66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~  145 (187)
T COG0742          66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLK  145 (187)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             85699996598999999999998487612599840089998722778851289968997536066899998887658778


Q ss_pred             CCCEEEEE
Q ss_conf             99599999
Q gi|254780476|r   76 EIPVIAVT   83 (123)
Q Consensus        76 ~ipii~~t   83 (123)
                      .-.+|++-
T Consensus       146 ~~~~iv~E  153 (187)
T COG0742         146 PGALIVVE  153 (187)
T ss_pred             CCCEEEEE
T ss_conf             89689998


No 173
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=69.83  E-value=6.4  Score=20.29  Aligned_cols=42  Identities=31%  Similarity=0.498  Sum_probs=27.5

Q ss_pred             HHCCCCEEEEEEE--C--CCCCH--------HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             8279989999504--1--29695--------99999998285768995999992
Q gi|254780476|r   43 RQHKPDVIIMDIQ--L--QEISG--------LEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        43 ~~~~~dlillD~~--m--p~~dG--------~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      .++.+|+|++|+-  |  |+.++        -++++.+|....-.++|||.++-
T Consensus       126 ~~~~~~~vvvDyl~l~~~~~~~~~~~r~~~v~~i~~~Lk~lA~e~~i~ii~~sQ  179 (186)
T pfam03796       126 REHGLGLIVIDYLQLMQGSKASKSENRQQEISEISRSLKALAKELNIPVIALSQ  179 (186)
T ss_pred             HHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             855998899748986367788877559999999999999999997991899722


No 174
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=69.73  E-value=10  Score=19.19  Aligned_cols=101  Identities=18%  Similarity=0.270  Sum_probs=58.0

Q ss_pred             CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHH
Q ss_conf             8778995399---8999999999997898999988979-------999999827998999950412969--599999998
Q gi|254780476|r    2 LKKVMIVEDN---ELNMKLFRDLIETSGYIALQTRNGM-------EALELARQHKPDVIIMDIQLQEIS--GLEITKQIK   69 (123)
Q Consensus         2 ~kkiLiVDD~---~~~~~~l~~~l~~~g~~v~~a~~g~-------eal~~l~~~~~dlillD~~mp~~d--G~el~~~ir   69 (123)
                      .+||.+|--|   .-..+.++.+-+..|..+..+.++.       ++++..+.+.+|+|++|.-  +.+  --+..++++
T Consensus        29 ~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D~IlIDTa--Gr~~~d~~~~~el~  106 (196)
T pfam00448        29 GKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYDVVLVDTA--GRLQNDKNLMDELK  106 (196)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHH
T ss_conf             9928999758776889999999998639817814877787899999999988468999999899--98747677899999


Q ss_pred             ---HCCCCCCCCEEEEEECCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf             ---28576899599999249989999999----7699889-987
Q gi|254780476|r   70 ---EDSELQEIPVIAVTAFAMKGDEERIR----KGGCEAY-ISK  105 (123)
Q Consensus        70 ---~~~~~~~ipii~~t~~~~~~~~~~~~----~~g~~~~-l~K  105 (123)
                         .... ..-.++++++....++..++.    ..+.++. ++|
T Consensus       107 ~~~~~~~-~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TK  149 (196)
T pfam00448       107 KIKRVIA-PDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTK  149 (196)
T ss_pred             HHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9985228-730289985677821378999876004776268884


No 175
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=69.69  E-value=9.9  Score=19.21  Aligned_cols=53  Identities=17%  Similarity=0.152  Sum_probs=30.2

Q ss_pred             HHHHHHCCCCEEEE-----EEECCCCCHHHHH-HHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             99998279989999-----5041296959999-999828576899599999249989999
Q gi|254780476|r   39 LELARQHKPDVIIM-----DIQLQEISGLEIT-KQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        39 l~~l~~~~~dlill-----D~~mp~~dG~el~-~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      ++.++++++|++++     |-.-|-....+++ +-+.+... ..+|+|+++|......+.
T Consensus        32 ~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~~fl~~l~~-~~~~vvvIaGNHDS~~rL   90 (402)
T PRK10966         32 LEQAQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNHDSVATL   90 (402)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHH
T ss_conf             99999849999998875579999999999999999999996-699689994798987776


No 176
>PRK10128 putative aldolase; Provisional
Probab=69.26  E-value=10  Score=19.13  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHHHH
Q ss_conf             7999999982799899995041296959999999828576899599999249989999999769988998798-989999
Q gi|254780476|r   35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFM  113 (123)
Q Consensus        35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~  113 (123)
                      .....+.+..--+|.+++|.+=--.+=-++...++........|++=+ ....+....++++.|+.+.+.-=+ +.++..
T Consensus        11 sp~~aEi~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~~~~piVRv-~~~~~~~i~r~LD~Ga~GiivP~V~tae~A~   89 (250)
T PRK10128         11 TSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRP-VEGSKALIKQVLDIGAQTLLIPMVDTAEQAR   89 (250)
T ss_pred             CHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHCCCCEEEECCCCCHHHHH
T ss_conf             979999998089899998177899999999999999986599719985-8999889999983789877854748699999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780476|r  114 ETIK  117 (123)
Q Consensus       114 ~~i~  117 (123)
                      +.++
T Consensus        90 ~~V~   93 (250)
T PRK10128         90 QVVS   93 (250)
T ss_pred             HHHH
T ss_conf             9999


No 177
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=68.98  E-value=10  Score=19.09  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             CCEEEEECCC----HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             8778995399----899999999999789899998-------89799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIVEDN----ELNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~----~~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .|||.++-+|    ....+.++..++..|+++...       .+-...+..++...||+|++-..  .-+...++++.++
T Consensus       134 ~~~vaiv~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~i~~~~~~~pd~v~~~~~--~~~~~~~~~q~~~  211 (336)
T cd06360         134 YKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFA--GGDAIKFVKQYDA  211 (336)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHH
T ss_conf             98699946874466999999999999739969999965899856799999998769899999356--6048999999997


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHH
Q ss_conf             85768995999992499899999997699889987989-------8999999999740
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS-------LSIFMETIKKYIG  121 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-------~~~L~~~i~~~l~  121 (123)
                      ..-..++|++.-............-+....-+..-|+.       ..++.+..++..|
T Consensus       212 ~G~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g  269 (336)
T cd06360         212 AGLKAKIPLIGSGFLTDGTTLGAAGEAAEGVITALHYADTLDNPANQAFVKAYRAAYP  269 (336)
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             3998780699865447888887657631676984003775688256999999999858


No 178
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=68.73  E-value=10  Score=19.06  Aligned_cols=92  Identities=17%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             7789-953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVM-IVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiL-iVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      |||- +-+|+.   ...+.+++.++..|.++...       .+-...+..++...||+|++-  ....++..+++++|+.
T Consensus       139 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~V~~~--~~~~~~~~~~~q~~~~  216 (347)
T cd06335         139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIV--GNGPEGAQIANGMAKL  216 (347)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC
T ss_conf             66999970763668999999999986598675788407998348999999986699999994--7761799999999971


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCC
Q ss_conf             576899599999249989999999769
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGG   98 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g   98 (123)
                      .  -+.|++...+.........+-...
T Consensus       217 G--~~~~~~g~~~~~~~~~~~~~g~~a  241 (347)
T cd06335         217 G--WKVPIISHWGLSGGNFIEGAGPAA  241 (347)
T ss_pred             C--CCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             9--997679414777589998656641


No 179
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.70  E-value=10  Score=19.06  Aligned_cols=95  Identities=16%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             7789953998999999999997898999988-979999999827998999950412969599999998285768995999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTR-NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~-~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ..++++|.|+...+..    +..|+.+.-.+ +-.+.++.+.-++-..+++-+.-|. +-..+.+.+|+..  .++||++
T Consensus       441 ~~~vvid~d~~~v~~~----~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit~~d~~-~~~~iv~~~r~~~--p~~~Iia  513 (558)
T PRK10669        441 IPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY-EAGEIVASAREKN--PDIEIIA  513 (558)
T ss_pred             CCEEEEECCHHHHHHH----HHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH-HHHHHHHHHHHHC--CCCEEEE
T ss_conf             9889998989999999----9689979997899889998579132499999819889-9999999999878--6986999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf             9924998999999976998899879
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKP  106 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KP  106 (123)
                      -+  ...++.++..+.|++..+.-.
T Consensus       514 Ra--~~~~~~~~L~~aGA~~VV~~~  536 (558)
T PRK10669        514 RA--HYDDEVAYITERGANQVVMGE  536 (558)
T ss_pred             EE--CCHHHHHHHHHCCCCEEECCH
T ss_conf             97--989999999977999898937


No 180
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=68.49  E-value=11  Score=19.03  Aligned_cols=69  Identities=13%  Similarity=0.308  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             899999999999789899998---89799999998279989999504129-69599999998285768995999
Q gi|254780476|r   12 ELNMKLFRDLIETSGYIALQT---RNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ..-...+...|+..||++...   ...++-.+.+.+++||+|-+...+-. ...++.+..+++.... ++|+++
T Consensus        13 ~~g~~~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgiS~~~~~~~~~~~~~~~~~~~~~~-~v~vv~   85 (125)
T cd02065          13 DIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGI-DIPVVV   85 (125)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf             7889999999997899899899988999999999860899999852113018999999999996799-875997


No 181
>PRK08904 consensus
Probab=68.48  E-value=11  Score=19.03  Aligned_cols=93  Identities=12%  Similarity=0.268  Sum_probs=50.2

Q ss_pred             HHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             9999978989-9998897999999982-7998999950412969599999998285768995999992499899999997
Q gi|254780476|r   19 RDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK   96 (123)
Q Consensus        19 ~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~   96 (123)
                      +++|...+.. +....+.++|+.+++. ..=.+=++.+.|-.-+.++..+.+++..  .++ +|..-+-...+...++.+
T Consensus         4 ~~~L~~~~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~a~~~i~~l~~~~--p~~-~vGaGTVl~~e~~~~a~~   80 (207)
T PRK08904          4 REILTAGAVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLRTPVGLDAIRLIAKEV--PNA-IVGAGTVTNPEQLKAVED   80 (207)
T ss_pred             HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHHH
T ss_conf             99998699799997699999999999999879988999579913999999999868--987-685531368999999998


Q ss_pred             CCCCEEEECCCCHHHHHHH
Q ss_conf             6998899879898999999
Q gi|254780476|r   97 GGCEAYISKPISLSIFMET  115 (123)
Q Consensus        97 ~g~~~~l~KPi~~~~L~~~  115 (123)
                      +|++ |+.-|.--.++.+.
T Consensus        81 aGA~-FiVSP~~~~~v~~~   98 (207)
T PRK08904         81 AGAV-FAISPGLHESLAKA   98 (207)
T ss_pred             CCCC-EEECCCCCHHHHHH
T ss_conf             4999-99848998999999


No 182
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=68.45  E-value=11  Score=19.03  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             HHHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             999999--99999789899998897--99999998279989999504129695-----9999999828576899599999
Q gi|254780476|r   13 LNMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus        13 ~~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t   83 (123)
                      ...+.+  .+.|-..||.|....+.  .-|.++..-  =-..++=+.-|-.+|     ...++.|++.   .++|||+=-
T Consensus       122 D~~etl~Aae~Lv~eGF~VlpY~~dD~v~akrLe~~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vPvIVDA  196 (267)
T CHL00162        122 DPIGTLKAAEFLVRKGFTVLPYINADPVLAKQLEDI--GCATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDA  196 (267)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEC
T ss_conf             878999999999978999989548998999999865--986886345512368875899999999964---899889968


Q ss_pred             ECCCHHHHHHHHHCCCCEEEECC-----CCHHHHHHHHHHHH
Q ss_conf             24998999999976998899879-----89899999999974
Q gi|254780476|r   84 AFAMKGDEERIRKGGCEAYISKP-----ISLSIFMETIKKYI  120 (123)
Q Consensus        84 ~~~~~~~~~~~~~~g~~~~l~KP-----i~~~~L~~~i~~~l  120 (123)
                      +-..+.+..+++++|+++.|.--     -+|-.+-++++.++
T Consensus       197 GiG~pSdAa~aMElG~DaVL~NTAIA~A~dPv~MA~A~k~AV  238 (267)
T CHL00162        197 GIGTPSEASQAMELGASGVLLNTAVAKAKNPEQMAKAMKLAV  238 (267)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
T ss_conf             989678889999746777870167671699899999999999


No 183
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=68.17  E-value=11  Score=18.99  Aligned_cols=103  Identities=19%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             CEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-------HHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             778995399---8999999999997898999988979999999-------827998999950412969599999998285
Q gi|254780476|r    3 KKVMIVEDN---ELNMKLFRDLIETSGYIALQTRNGMEALELA-------RQHKPDVIIMDIQLQEISGLEITKQIKEDS   72 (123)
Q Consensus         3 kkiLiVDD~---~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l-------~~~~~dlillD~~mp~~dG~el~~~ir~~~   72 (123)
                      +||.+|--|   .-..+.++.+-+..|..+..+.++.+..+.+       +.+.+|+|++|.-=-.-.--++.++++...
T Consensus        29 ~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~l~  108 (173)
T cd03115          29 KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIK  108 (173)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             92899974887577999999999974985992277558799999999998756899899978887879999999999998


Q ss_pred             CC-C-CCCEEEEEECCCHHHHHH--HH--HCCCCEE-EEC
Q ss_conf             76-8-995999992499899999--99--7699889-987
Q gi|254780476|r   73 EL-Q-EIPVIAVTAFAMKGDEER--IR--KGGCEAY-ISK  105 (123)
Q Consensus        73 ~~-~-~ipii~~t~~~~~~~~~~--~~--~~g~~~~-l~K  105 (123)
                      .. + .-.++++++....+..++  .+  ..|++++ ++|
T Consensus       109 ~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TK  148 (173)
T cd03115         109 RVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTK  148 (173)
T ss_pred             HHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             6448972157424655065899999987427997899971


No 184
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=68.14  E-value=11  Score=18.99  Aligned_cols=78  Identities=19%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC--CE----EEEECCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHHHHHHH
Q ss_conf             8778995399899999999999789--89----99988979999999827998999950412969-----5999999982
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSG--YI----ALQTRNGMEALELARQHKPDVIIMDIQLQEIS-----GLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~~----v~~a~~g~eal~~l~~~~~dlillD~~mp~~d-----G~el~~~ir~   70 (123)
                      ..|+-+||=|+...+.-+++|..+.  ..    -....+|.+-++...+ .||+|++|..=|..-     -.++.+.+++
T Consensus       100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~  178 (282)
T COG0421         100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVDSTDPVGPAEALFTEEFYEGCRR  178 (282)
T ss_pred             CCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             4337999708899999998666754335797368996107999874887-677899858899884302377999999998


Q ss_pred             CCCCCCCCEEEE
Q ss_conf             857689959999
Q gi|254780476|r   71 DSELQEIPVIAV   82 (123)
Q Consensus        71 ~~~~~~ipii~~   82 (123)
                      .-  +.--|++.
T Consensus       179 ~L--~~~Gi~v~  188 (282)
T COG0421         179 AL--KEDGIFVA  188 (282)
T ss_pred             HC--CCCCEEEE
T ss_conf             62--88968999


No 185
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=67.83  E-value=8.2  Score=19.66  Aligned_cols=62  Identities=24%  Similarity=0.324  Sum_probs=35.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC----EEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             7789953998999999999997898999988979999999827998----999950412969599999998285768995
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD----VIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~d----lillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      +||+||||                 .+.+-.+-.+|.+.+++....    ++++|.+-+...  | +...++-.+..++|
T Consensus       118 ~kvvvveD-----------------V~TtG~s~~~A~~~i~~ag~~V~~v~~~vDR~e~~~~--E-~~A~~~f~~~y~~~  177 (187)
T TIGR00336       118 DKVVVVED-----------------VITTGGSILEAVEAIQEAGGEVAGVIVIVDRQERGKG--E-LSAGQEFEKEYGLP  177 (187)
T ss_pred             CEEEEEEC-----------------CCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCC--C-CCHHHHHHHHHCCE
T ss_conf             63899951-----------------4342479999999998618889999999826724331--0-13345546552864


Q ss_pred             EEEEEE
Q ss_conf             999992
Q gi|254780476|r   79 VIAVTA   84 (123)
Q Consensus        79 ii~~t~   84 (123)
                      ++-+..
T Consensus       178 ~~sl~~  183 (187)
T TIGR00336       178 LISLIT  183 (187)
T ss_pred             EEEEEE
T ss_conf             432313


No 186
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=67.60  E-value=11  Score=18.93  Aligned_cols=84  Identities=12%  Similarity=0.026  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHH
Q ss_conf             897999999982799899995041296959999999828576899599999249989999999769988998798-9899
Q gi|254780476|r   33 RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSI  111 (123)
Q Consensus        33 ~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~  111 (123)
                      .......+.+...-||.+++|.+=-..|--++...++........|++= .....+....++++.|+++.+.-=+ +.++
T Consensus        20 ~~sp~~~Ei~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~iVR-vp~~~~~~i~~~LD~Ga~GiivP~V~t~ee   98 (249)
T TIGR03239        20 LGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVR-PPWNEPVIIKRLLDIGFYNFLIPFVESAEE   98 (249)
T ss_pred             CCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE-CCCCCHHHHHHHHCCCCCEEEECCCCCHHH
T ss_conf             8998999999718969999810448999999999999998469984897-999987899999708998789517455999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780476|r  112 FMETIK  117 (123)
Q Consensus       112 L~~~i~  117 (123)
                      ..+.++
T Consensus        99 a~~~v~  104 (249)
T TIGR03239        99 AERAVA  104 (249)
T ss_pred             HHHHHH
T ss_conf             999999


No 187
>PRK08782 consensus
Probab=66.95  E-value=11  Score=18.85  Aligned_cols=99  Identities=12%  Similarity=0.201  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             99999999978989-9998897999999982-799899995041296959999999828576899599999249989999
Q gi|254780476|r   15 MKLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        15 ~~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      ..-..++|+..|.. |....+.++|..+++. ..=.+=++.+.|-.-++++..+.+++..  .++ ++...+--..+...
T Consensus         7 ~~~~~~~L~~~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt~~a~~~i~~l~~~~--p~~-~vGaGTV~~~e~~~   83 (219)
T PRK08782          7 QNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIEALAMLKREL--PNI-VIGAGTVLSERQLR   83 (219)
T ss_pred             HCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEEECCHHHHH
T ss_conf             255999998789789997599999999999999879987999679933999999999868--994-79999705899999


Q ss_pred             HHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             9997699889987989899999999
Q gi|254780476|r   93 RIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        93 ~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      ++.++|++ |+.-|....++.+.-+
T Consensus        84 ~a~~aGA~-FiVSP~~~~~v~~~a~  107 (219)
T PRK08782         84 QSVDAGAD-FLVTPGTPAPLARLLA  107 (219)
T ss_pred             HHHHCCCC-EEECCCCCHHHHHHHH
T ss_conf             99984998-9987899799999999


No 188
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839   This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include  CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme .  The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=66.73  E-value=12  Score=18.82  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC----CCHHHHHHHHHHCCCCCCC-CEEEEEE
Q ss_conf             98999999999997-8989999889799999998279989999504129----6959999999828576899-5999992
Q gi|254780476|r   11 NELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQE----ISGLEITKQIKEDSELQEI-PVIAVTA   84 (123)
Q Consensus        11 ~~~~~~~l~~~l~~-~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~----~dG~el~~~ir~~~~~~~i-pii~~t~   84 (123)
                      |....+.+...|.. .||++..  +.++|         |+||++..==.    --.+.-+.+++.......- -+|+++|
T Consensus        12 N~~Dse~m~~~L~~~~G~~~~~--~~~~A---------Dv~i~NTC~vr~~ae~k~~~~l~~~~~~k~~~~~d~~i~V~G   80 (455)
T TIGR00089        12 NEADSEIMAGLLKEAAGYEVTD--DPEEA---------DVIIINTCAVREKAEQKVRSELGELAKLKKKNPDDAKIVVAG   80 (455)
T ss_pred             CHHHHHHHHHHHHHHCCEEECC--CCCCC---------CEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             5788999999888744714338--86644---------579985345651578999999999998277788885899846


Q ss_pred             CCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             499899999-9976998899879898999999999740
Q gi|254780476|r   85 FAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        85 ~~~~~~~~~-~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      --...+..+ ..+....+++.-|-+.+.+.+.|+++..
T Consensus        81 C~aq~~~~~l~~~~p~~d~~~G~~~~~~~~~~i~~~~~  118 (455)
T TIGR00089        81 CLAQREGEELLKRIPEVDIVLGTQDVERIPELINSAEE  118 (455)
T ss_pred             CCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             44323878999645856999843137889999999863


No 189
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.54  E-value=12  Score=18.80  Aligned_cols=111  Identities=23%  Similarity=0.261  Sum_probs=66.4

Q ss_pred             CCCEEEEEC----CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCC
Q ss_conf             987789953----998999999999997898999988979999999827998999950412969-599999998285768
Q gi|254780476|r    1 MLKKVMIVE----DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQ   75 (123)
Q Consensus         1 m~kkiLiVD----D~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~   75 (123)
                      |++|+-++-    =|....+.+...|...||. ..+.+.++         -|++++...==-.+ --+..+.|++....+
T Consensus         1 ~~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~-~~~~~~~e---------ADvviiNTC~V~~~a~~k~~~~i~~~~~~~   70 (437)
T COG0621           1 MMKKVYIETLGCQMNLYDSERMAGLLEAAGYE-ELVEDPEE---------ADVVIINTCAVREKAEQKVRSAIGELKKLK   70 (437)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCC---------CCEEEEECCEEEEHHHHHHHHHHHHHHHHC
T ss_conf             98459999668884277899999999876885-34698556---------888999667655359999999999999729


Q ss_pred             CCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             9959999924998999999976998899879898999999999740
Q gi|254780476|r   76 EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        76 ~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      .--+|++||.......+.....--.+.+.=|-+.+.+.+.|.+++.
T Consensus        71 p~~~iiVtGC~aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~  116 (437)
T COG0621          71 PDAKIIVTGCLAQAEEEILERAPEVDIVLGPQNKERLPEAIEKALR  116 (437)
T ss_pred             CCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             9978999687123578889508886099787347778999999861


No 190
>KOG1601 consensus
Probab=66.43  E-value=1  Score=24.92  Aligned_cols=104  Identities=12%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             EEECCCHHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             9953998999999999997898----999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGY----IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~----~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      +.+||+...+.++..++...-+    ......+..+.........+|+++-++.||++.|+++..++........+|+.+
T Consensus        19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (340)
T KOG1601          19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPS   98 (340)
T ss_pred             CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf             45664446600011454346665555553457655443322355567667653335553213455214664546788654


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf             9924998999999976998899879898
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPISL  109 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi~~  109 (123)
                      .+..............++..|+.||...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~  126 (340)
T KOG1601          99 MPSSNSSSSSSSSVSPSASLELTKPDRK  126 (340)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             5544545544455466411245555553


No 191
>KOG4175 consensus
Probab=66.12  E-value=12  Score=18.75  Aligned_cols=83  Identities=16%  Similarity=0.250  Sum_probs=47.3

Q ss_pred             HHHHHHHHHCCCCEEEEEEECC--CCCHHHH-----------------HHHHHH-CCCCCCCCEEEEEECC------CHH
Q ss_conf             9999999827998999950412--9695999-----------------999982-8576899599999249------989
Q gi|254780476|r   36 MEALELARQHKPDVIIMDIQLQ--EISGLEI-----------------TKQIKE-DSELQEIPVIAVTAFA------MKG   89 (123)
Q Consensus        36 ~eal~~l~~~~~dlillD~~mp--~~dG~el-----------------~~~ir~-~~~~~~ipii~~t~~~------~~~   89 (123)
                      ..+++-++..-.|+|=+.+-..  -.||-..                 ...+++ .++--.+||++++.+.      .+.
T Consensus        35 ~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~  114 (268)
T KOG4175          35 AKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN  114 (268)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf             99998875279674886685676456773455667899872896899999999850468630266220144887640789


Q ss_pred             HHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             999999769988998798989999999997
Q gi|254780476|r   90 DEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        90 ~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
                      ....+.++|+++|+.-.+.+++- ..++..
T Consensus       115 ~iq~ak~aGanGfiivDlPpEEa-~~~Rne  143 (268)
T KOG4175         115 YIQVAKNAGANGFIIVDLPPEEA-ETLRNE  143 (268)
T ss_pred             HHHHHHHCCCCCEEECCCCHHHH-HHHHHH
T ss_conf             99999965877458506886898-999999


No 192
>PRK05595 replicative DNA helicase; Provisional
Probab=66.11  E-value=9.1  Score=19.42  Aligned_cols=66  Identities=27%  Similarity=0.316  Sum_probs=36.6

Q ss_pred             HHHHHCCCEEEEEC--CHHH----HHHHHHHCCCCEEEEEEE--CCCC-CH-------HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             99997898999988--9799----999998279989999504--1296-95-------9999999828576899599999
Q gi|254780476|r   20 DLIETSGYIALQTR--NGME----ALELARQHKPDVIIMDIQ--LQEI-SG-------LEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus        20 ~~l~~~g~~v~~a~--~g~e----al~~l~~~~~dlillD~~--mp~~-dG-------~el~~~ir~~~~~~~ipii~~t   83 (123)
                      ..+..+.+.+....  +-.+    +..+-+++.+|+|++|+-  |+.. .+       -++.+.+|....--++|||++|
T Consensus       279 ~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~ls  358 (444)
T PRK05595        279 GPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGKSSESRQQEVSEISRSIKALAKEMECPVIALS  358 (444)
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             99854897054899964899999999999873999899823763578988888999999999999999999699799970


Q ss_pred             EC
Q ss_conf             24
Q gi|254780476|r   84 AF   85 (123)
Q Consensus        84 ~~   85 (123)
                      =-
T Consensus       359 QL  360 (444)
T PRK05595        359 QL  360 (444)
T ss_pred             CC
T ss_conf             26


No 193
>PRK13055 putative lipid kinase; Reviewed
Probab=65.83  E-value=12  Score=18.72  Aligned_cols=87  Identities=22%  Similarity=0.247  Sum_probs=46.5

Q ss_pred             CCCEEEEECC----C---HHHHHHHHHHHHHCCCEEEEE---CCHHHHHH---HHHHCCCCEEEEEEECCCCCHH--HHH
Q ss_conf             9877899539----9---899999999999789899998---89799999---9982799899995041296959--999
Q gi|254780476|r    1 MLKKVMIVED----N---ELNMKLFRDLIETSGYIALQT---RNGMEALE---LARQHKPDVIIMDIQLQEISGL--EIT   65 (123)
Q Consensus         1 m~kkiLiVDD----~---~~~~~~l~~~l~~~g~~v~~a---~~g~eal~---~l~~~~~dlillD~~mp~~dG~--el~   65 (123)
                      ||||+++|=+    +   ......+...|+..|+++...   ..+.+|.+   .+....+|+|+.=    +-||-  |++
T Consensus         1 MmKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~~tt~~~~~a~~~a~~a~~~g~d~Iva~----GGDGTinevv   76 (334)
T PRK13055          1 MQKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEARRAAKAGFDLIIAA----GGDGTINEVV   76 (334)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE----CCCCHHHHHH
T ss_conf             970699999987789757889999999999869859999944178579999998765799899998----7760899999


Q ss_pred             HHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             99982857689959999924998999999
Q gi|254780476|r   66 KQIKEDSELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        66 ~~ir~~~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      ..+....   .-|.+.+-....-.+..+.
T Consensus        77 ngl~~~~---~~~~LgiIP~GTgNDfAr~  102 (334)
T PRK13055         77 NGIAPLE---KRPKMAIIPAGTTNDYARA  102 (334)
T ss_pred             HHHHCCC---CCCEEEEEECCCCHHHHHH
T ss_conf             9873469---9971899807770789998


No 194
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=64.57  E-value=13  Score=18.58  Aligned_cols=87  Identities=11%  Similarity=0.103  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             99999999999789899998897999999982799899995041296959999999828576899599999249989999
Q gi|254780476|r   13 LNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        13 ~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      ...+.+...+-.|||.+..-++..-.+..+...-              |......+|+.+ ....|.+++......    
T Consensus        48 ~vi~~l~~nfv~wgwDvt~~sN~~~fl~~~~~~~--------------gs~as~t~r~~~-~d~~P~l~iV~~~rs----  108 (136)
T cd02990          48 SIVQYLSQNFITWGWDMTKESNKARFLSSCTRHF--------------GSVAAQTIRNIK-TDQLPAILIIMGKRS----  108 (136)
T ss_pred             HHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHH--------------CHHHHHHHHHCC-CCCCCEEEEEEECCC----
T ss_conf             9999998365583201576567899999998750--------------648999998365-244886765664465----


Q ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99976998899879898999999999740
Q gi|254780476|r   93 RIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        93 ~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                         ...+-+.+.-++.+++|+..+.+++.
T Consensus       109 ---~~evl~vi~Gn~~~dELl~~L~~~~E  134 (136)
T cd02990         109 ---SNEVLNVIQGNTGVDELLMRLIEAME  134 (136)
T ss_pred             ---CCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             ---42342335379999999999999876


No 195
>cd04732 HisA HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=64.10  E-value=13  Score=18.53  Aligned_cols=68  Identities=24%  Similarity=0.272  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHHCCCC-EEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             979999999827998-99995041296-95--9999999828576899599999249989999999769988998
Q gi|254780476|r   34 NGMEALELARQHKPD-VIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        34 ~g~eal~~l~~~~~d-lillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      +..+.++.+.+..+. +++.|+.--++ .|  +++++++++.   .++|+++--+-....+..+..+.|+++.+.
T Consensus       147 ~~~~~i~~~~~~g~geiilt~i~~dGt~~G~d~~ll~~i~~~---~~~p~i~~GGv~s~~di~~l~~~g~~gviv  218 (234)
T cd04732         147 SLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV  218 (234)
T ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf             169999999745864699876425665356899999999865---799899981899999999999779989999


No 196
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=64.06  E-value=13  Score=18.52  Aligned_cols=81  Identities=12%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             HHCCCEEEEECCHH--------HHH-HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf             97898999988979--------999-999827998999950412969599999998285768995999992499899999
Q gi|254780476|r   23 ETSGYIALQTRNGM--------EAL-ELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER   93 (123)
Q Consensus        23 ~~~g~~v~~a~~g~--------eal-~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~   93 (123)
                      ...+..+..+.+|.        ++. +++.+..||+++.=.-=|..-|-.-+|.+-+.   ..+|.|++|........+.
T Consensus        27 dRedI~vrv~gsGaKm~pe~~e~~~~~~l~~~~pDf~i~isPN~a~PGP~~ARE~l~~---~giP~IvI~D~p~~K~kd~  103 (276)
T pfam01993        27 DREDIEVRVVGSGAKMDPECVEEVVLDMLEEFEPDFVIYISPNPAAPGPKKAREMLSD---SGYPAVIIGDAPGLKVKDE  103 (276)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHH
T ss_conf             3468649995266667988899999999986189989997899889995679999975---6998799837863325899


Q ss_pred             HHHCCCCEEEECC
Q ss_conf             9976998899879
Q gi|254780476|r   94 IRKGGCEAYISKP  106 (123)
Q Consensus        94 ~~~~g~~~~l~KP  106 (123)
                      ..+.|+-.++.|.
T Consensus       104 l~~~g~GYIivk~  116 (276)
T pfam01993       104 MEEQGLGYILVKA  116 (276)
T ss_pred             HHHCCCCEEEEEC
T ss_conf             9865984799836


No 197
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.02  E-value=13  Score=18.52  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=55.8

Q ss_pred             HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf             99999789899998897--999999982799899995041296959-----99999982857689959999924998999
Q gi|254780476|r   19 RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISGL-----EITKQIKEDSELQEIPVIAVTAFAMKGDE   91 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG~-----el~~~ir~~~~~~~ipii~~t~~~~~~~~   91 (123)
                      .++|-..||.|....+.  .-|-++.  +-=-..++-+.-|-.+|.     +.++.|++..   ++|||+=-+-..+.+.
T Consensus       123 ae~Lv~eGF~VlPY~~dD~v~arrLe--e~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a---~VPviVDAGiG~pSdA  197 (262)
T COG2022         123 AEQLVKEGFVVLPYTTDDPVLARRLE--EAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA---DVPVIVDAGIGTPSDA  197 (262)
T ss_pred             HHHHHHCCCEEEECCCCCHHHHHHHH--HCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHH
T ss_conf             99998679888503688789999998--649668633566566786757889999999738---9988986798976688


Q ss_pred             HHHHHCCCCEEEEC
Q ss_conf             99997699889987
Q gi|254780476|r   92 ERIRKGGCEAYISK  105 (123)
Q Consensus        92 ~~~~~~g~~~~l~K  105 (123)
                      .+++++|+++.|.-
T Consensus       198 a~aMElG~DaVL~N  211 (262)
T COG2022         198 AQAMELGADAVLLN  211 (262)
T ss_pred             HHHHHHCCCEEEHH
T ss_conf             99986055432325


No 198
>PRK07413 hypothetical protein; Validated
Probab=63.70  E-value=13  Score=18.48  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=17.7

Q ss_pred             HCCCCEEEEEEECCCCC-H----HHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf             27998999950412969-5----999999982857689959999924998999
Q gi|254780476|r   44 QHKPDVIIMDIQLQEIS-G----LEITKQIKEDSELQEIPVIAVTAFAMKGDE   91 (123)
Q Consensus        44 ~~~~dlillD~~mp~~d-G----~el~~~ir~~~~~~~ipii~~t~~~~~~~~   91 (123)
                      +..+|+|+||=-..-++ |    =|++..|++.|...+   +++|+..-+...
T Consensus       123 sg~ydlVVLDEIn~Al~~Gll~~deVl~~L~~RP~~~e---VVlTGR~AP~eL  172 (382)
T PRK07413        123 SGLYSVVVLDELNPVLDLGLLPVDEVVKTLKSRPEGLE---IIITGRAAPQSL  172 (382)
T ss_pred             CCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCE---EEEECCCCCHHH
T ss_conf             89989899721667845798059999999970999988---999599999999


No 199
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=63.48  E-value=13  Score=18.46  Aligned_cols=56  Identities=14%  Similarity=0.248  Sum_probs=34.8

Q ss_pred             HHHHHHHCCCCEEEE-----EEECCCCCHHHHH-HHHHHCCCC-CCCCEEEEEECCCHHHHHH
Q ss_conf             999998279989999-----5041296959999-999828576-8995999992499899999
Q gi|254780476|r   38 ALELARQHKPDVIIM-----DIQLQEISGLEIT-KQIKEDSEL-QEIPVIAVTAFAMKGDEER   93 (123)
Q Consensus        38 al~~l~~~~~dlill-----D~~mp~~dG~el~-~~ir~~~~~-~~ipii~~t~~~~~~~~~~   93 (123)
                      -++.++++++|+||+     |-.-|.----++. +.+++.... +.+|+|+++|..+..+..+
T Consensus        40 l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls  102 (275)
T TIGR00619        40 LLEILKAEQVDALLVAGDVFDTANPPAEAQELFYAFLLNLSDANPRLPIVVISGNHDSADRLS  102 (275)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHC
T ss_conf             999997389988997000078898879999999999999985389612787047888778611


No 200
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=63.44  E-value=13  Score=18.46  Aligned_cols=88  Identities=23%  Similarity=0.264  Sum_probs=56.3

Q ss_pred             CCEEEEECCCHHHH----HHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             87789953998999----999999997898999988---------97999999982799899995041296959999999
Q gi|254780476|r    2 LKKVMIVEDNELNM----KLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQI   68 (123)
Q Consensus         2 ~kkiLiVDD~~~~~----~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i   68 (123)
                      .||+|||-|....+    +.+...|+..|..+...+         +..++.+.++++.+|+|+-=   -+.+-.+.++.|
T Consensus        31 ~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~D~ivav---GGGS~iD~AKai  107 (383)
T PRK09860         31 FTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL---GGGSPHDCAKGI  107 (383)
T ss_pred             CCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCHHHHHHHH
T ss_conf             98799982845665746999999998769958996895279699999999999987399999993---896226789999


Q ss_pred             H---------------HCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             8---------------28576899599999249989999
Q gi|254780476|r   69 K---------------EDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        69 r---------------~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      .               .....+.+|+|.+.+-...+.+.
T Consensus       108 a~~~~~~~~~~d~~g~~~~~~~~lP~iaIPTTaGTGSE~  146 (383)
T PRK09860        108 ALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEM  146 (383)
T ss_pred             HHHHHCCCCHHHHHCCCCCCCCCCCEEEECCCCCCHHHH
T ss_conf             999808998899736675568889889873998457887


No 201
>PRK05636 replicative DNA helicase; Provisional
Probab=63.29  E-value=11  Score=19.00  Aligned_cols=68  Identities=22%  Similarity=0.305  Sum_probs=40.0

Q ss_pred             HHHHHHCCCEEEEECC--HHH----HHHHHHHCCCCEEEEEEE--CCCCCH-----H---HHHHHHHHCCCCCCCCEEEE
Q ss_conf             9999978989999889--799----999998279989999504--129695-----9---99999982857689959999
Q gi|254780476|r   19 RDLIETSGYIALQTRN--GME----ALELARQHKPDVIIMDIQ--LQEISG-----L---EITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~~--g~e----al~~l~~~~~dlillD~~--mp~~dG-----~---el~~~ir~~~~~~~ipii~~   82 (123)
                      ...+..+.+.+....+  -.+    +.++-+.+..++|++|+-  |+.-+.     .   ++.+.+|....--++|||++
T Consensus       344 ~~~l~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVDYLQLm~~~~~~~~R~~ev~~ISr~LK~lAkel~vpVi~L  423 (507)
T PRK05636        344 LGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAI  423 (507)
T ss_pred             HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99986198899849997699999999999861799989984588456888876689999999999999999979988997


Q ss_pred             EECC
Q ss_conf             9249
Q gi|254780476|r   83 TAFA   86 (123)
Q Consensus        83 t~~~   86 (123)
                      +=-+
T Consensus       424 sQLn  427 (507)
T PRK05636        424 SQLN  427 (507)
T ss_pred             CCCC
T ss_conf             1268


No 202
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.25  E-value=13  Score=18.43  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             HHHHHHHCCCE-EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf             99999978989-9998897999999982---7998999950412969599999998285768995999992499899999
Q gi|254780476|r   18 FRDLIETSGYI-ALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER   93 (123)
Q Consensus        18 l~~~l~~~g~~-v~~a~~g~eal~~l~~---~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~   93 (123)
                      +-..|+..+.. +....+.++|+..++.   .-..++  .+.|-.-++++..+++|+..  .++ +|..-+-...+...+
T Consensus         6 ~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~i--EiTl~t~~a~~~I~~l~~~~--p~~-~iGaGTV~~~e~~~~   80 (210)
T PRK07455          6 WLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLI--EITWNSDQPAELISQLREKL--PEC-IIGTGTLLTLEDLEE   80 (210)
T ss_pred             HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEE--EEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHH
T ss_conf             9999997997999975999999999999998799889--99689988999999999878--996-898881878999999


Q ss_pred             HHHCCCCEEEECCCCHHHHHHH
Q ss_conf             9976998899879898999999
Q gi|254780476|r   94 IRKGGCEAYISKPISLSIFMET  115 (123)
Q Consensus        94 ~~~~g~~~~l~KPi~~~~L~~~  115 (123)
                      +.++|++ |+.-|....++.+.
T Consensus        81 a~~aGA~-FiVSP~~~~~vi~~  101 (210)
T PRK07455         81 AIAAGAQ-FCFTPHVDLELIQA  101 (210)
T ss_pred             HHHCCCC-EEECCCCCHHHHHH
T ss_conf             9986999-99868888999999


No 203
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=63.24  E-value=13  Score=18.43  Aligned_cols=78  Identities=24%  Similarity=0.270  Sum_probs=53.4

Q ss_pred             HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-------CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             999978989999889799999998279989999504-------1296959999999828576899599999249989999
Q gi|254780476|r   20 DLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-------LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        20 ~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-------mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      +++...-..-.++.+-+++.+..+.. +|.|.+.--       ++.-.|++.++++++...   +|++++-|. ..+...
T Consensus        99 ~~~~~~~iIG~S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~---iP~vAIGGi-~~~nv~  173 (211)
T COG0352          99 ELLGPGLIIGLSTHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN---IPVVAIGGI-NLENVP  173 (211)
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCEEEECCC-CHHHHH
T ss_conf             74199978983049999999987639-9999988867889998877467899999998279---998998488-999999


Q ss_pred             HHHHCCCCEE
Q ss_conf             9997699889
Q gi|254780476|r   93 RIRKGGCEAY  102 (123)
Q Consensus        93 ~~~~~g~~~~  102 (123)
                      +..+.|+++.
T Consensus       174 ~v~~~Ga~gV  183 (211)
T COG0352         174 EVLEAGADGV  183 (211)
T ss_pred             HHHHHCCCEE
T ss_conf             9998298769


No 204
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=63.18  E-value=12  Score=18.67  Aligned_cols=69  Identities=20%  Similarity=0.293  Sum_probs=51.5

Q ss_pred             HHHHHHHH------CCCEEEEECCHHH---HHHHHHHCCCCEEEEEEE---CCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99999997------8989999889799---999998279989999504---12969599999998285768995999992
Q gi|254780476|r   17 LFRDLIET------SGYIALQTRNGME---ALELARQHKPDVIIMDIQ---LQEISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        17 ~l~~~l~~------~g~~v~~a~~g~e---al~~l~~~~~dlillD~~---mp~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      .-..+|+.      ..|....-+-|+.   |+..+--++|.+|+-|=-   |-..+|-++..-+|+..+.+.+-|+++|-
T Consensus       121 ~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARALv~~P~LvLADEPTAALD~~SGr~VV~Lm~~lA~eqGc~iL~VTH  200 (220)
T TIGR02982       121 KARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARALVARPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILLVTH  200 (220)
T ss_pred             HHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf             99999986060125540524367861689999999733897676257723322113389999999988771988999836


Q ss_pred             C
Q ss_conf             4
Q gi|254780476|r   85 F   85 (123)
Q Consensus        85 ~   85 (123)
                      -
T Consensus       201 D  201 (220)
T TIGR02982       201 D  201 (220)
T ss_pred             C
T ss_conf             7


No 205
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.94  E-value=14  Score=18.40  Aligned_cols=94  Identities=12%  Similarity=0.082  Sum_probs=55.8

Q ss_pred             EEEEECCCHH----HHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf             7899539989----999999999978989--9-99889799999998279989999504129695999999982857689
Q gi|254780476|r    4 KVMIVEDNEL----NMKLFRDLIETSGYI--A-LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE   76 (123)
Q Consensus         4 kiLiVDD~~~----~~~~l~~~l~~~g~~--v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~   76 (123)
                      .|||=|+.-.    ..+.++..-+..++.  + .++.+-.++.+.+... +|.|.+|=.=|+    ++-+.++.......
T Consensus       153 ~ilikdNHi~~~g~~~~ai~~~r~~~~~~~kIeVEv~~l~ea~~a~~~g-aDiI~LDn~~~e----~~k~~v~~~~~~~~  227 (272)
T PRK05848        153 CLMLKDTHLKHIKDLKSFIQHARKNIPFTAKIEIECESLEEAKEAMNAG-ADIVMCDNMSVE----ETKEIVAYRNANYP  227 (272)
T ss_pred             EEEECHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCC-CCEEEECCCCHH----HHHHHHHHHHCCCC
T ss_conf             0788666887726899999999985899846999749999999998459-998995899999----99999998746488


Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             95999992499899999997699889
Q gi|254780476|r   77 IPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        77 ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      -..+-.||.-..+...+..+.|+|.+
T Consensus       228 ~v~ieaSGGI~~~ni~~yA~~GvD~I  253 (272)
T PRK05848        228 HVLLEASGNISLETINAYAKSGVDAI  253 (272)
T ss_pred             CEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             77999979998999999996599999


No 206
>pfam09936 DUF2168 Uncharacterized protein conserved in bacteria (DUF2168). This domain, found in various hypothetical prokaryotic proteins, has no known function. It is also found in a few prokaryotic tRNA (guanine-N(1)-)-methyltransferases.
Probab=62.54  E-value=14  Score=18.36  Aligned_cols=98  Identities=18%  Similarity=0.309  Sum_probs=67.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC--CC-------------EEEEECCHHHHHHHHHH---CCCCEEEEEEE-CCCCCHHH
Q ss_conf             77899539989999999999978--98-------------99998897999999982---79989999504-12969599
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS--GY-------------IALQTRNGMEALELARQ---HKPDVIIMDIQ-LQEISGLE   63 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~--g~-------------~v~~a~~g~eal~~l~~---~~~dlillD~~-mp~~dG~e   63 (123)
                      ++.-||---+..++..++++..|  |+             .|..++|-++|++-+.+   .+|-+|..+-. -|+.-+|+
T Consensus        43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~~NP~R~eAl~~v~~~~sle~ai~~i~~~~G~~p~vvaTsAr~~~~~is~~  122 (185)
T pfam09936        43 GRYYIVTPLEAQQALVERILAHWQEGYGGEYNPDRKEALSLVKVVSSLEEAIEDIEKRTGQRPLIVATSARKRPNTISYE  122 (185)
T ss_pred             CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
T ss_conf             66799560199999999999873259786669678999857300602999999999961999779980475689973999


Q ss_pred             HHHHHHHCCCCCCCCEEEE--EECCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf             9999982857689959999--92499899999997699889987989
Q gi|254780476|r   64 ITKQIKEDSELQEIPVIAV--TAFAMKGDEERIRKGGCEAYISKPIS  108 (123)
Q Consensus        64 l~~~ir~~~~~~~ipii~~--t~~~~~~~~~~~~~~g~~~~l~KPi~  108 (123)
                      -+++.-.+   ..-|++++  ||.....+...     ..+|+..|+.
T Consensus       123 ~lr~~i~~---~~~P~LllFGTGwGL~~e~~~-----~~D~iLePI~  161 (185)
T pfam09936       123 ELRKMIQE---REKPVLLLFGTGWGLAPEVLE-----QADYVLEPIR  161 (185)
T ss_pred             HHHHHHHC---CCCCEEEEECCCCCCCHHHHH-----HCCEEECCCC
T ss_conf             99999844---588189996587687799997-----4686670563


No 207
>PRK06857 consensus
Probab=62.46  E-value=14  Score=18.35  Aligned_cols=92  Identities=11%  Similarity=0.214  Sum_probs=45.2

Q ss_pred             HHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf             99997898-99998897999999982-79989999504129695999999982857689959999924998999999976
Q gi|254780476|r   20 DLIETSGY-IALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG   97 (123)
Q Consensus        20 ~~l~~~g~-~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~   97 (123)
                      +.|...+. -+....+.+++..+++. ..-.+=++.+.|-.-++++..+.+|+..  .++ +|..-+--..++..++.++
T Consensus         7 ~~l~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~--p~~-~vGaGTV~~~e~~~~a~~a   83 (209)
T PRK06857          7 EKLRALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSAAAAEAIRLLREAY--PDM-LIGAGTVLTPEQVDAAKEA   83 (209)
T ss_pred             HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHHHC
T ss_conf             9999799799997599999999999999879988999589932999999999758--994-8999937679999999983


Q ss_pred             CCCEEEECCCCHHHHHHH
Q ss_conf             998899879898999999
Q gi|254780476|r   98 GCEAYISKPISLSIFMET  115 (123)
Q Consensus        98 g~~~~l~KPi~~~~L~~~  115 (123)
                      |++ |+.-|.--.++.+.
T Consensus        84 GA~-FiVSP~~~~~v~~~  100 (209)
T PRK06857         84 GAD-FIVSPGFNPNTVKY  100 (209)
T ss_pred             CCC-EEECCCCCHHHHHH
T ss_conf             999-99908999999999


No 208
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.27  E-value=14  Score=18.33  Aligned_cols=102  Identities=16%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             HHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99999--99999789899998897--99999998279989999504129695-----99999998285768995999992
Q gi|254780476|r   14 NMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        14 ~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      ..+.+  .+.|-..||.|....+.  .-|-++...  =-..++=+.-|-.+|     .+.++.|++..   ++|||+=-+
T Consensus       110 ~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLe~~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIVDAG  184 (256)
T PRK00208        110 PIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA--GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQA---DVPVIVDAG  184 (256)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC
T ss_conf             68999999999988998978678898999999974--9534520456434798879999999999867---998898578


Q ss_pred             CCCHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf             499899999997699889987-----989899999999974
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAYISK-----PISLSIFMETIKKYI  120 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l  120 (123)
                      -..+.+..+++++|+++.|.-     --+|-.+-+.++.++
T Consensus       185 iG~pS~Aa~AMElG~DaVL~NTAIA~A~dPv~MA~A~~~AV  225 (256)
T PRK00208        185 IGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV  225 (256)
T ss_pred             CCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             89766789998625543235568772699899999999999


No 209
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=61.88  E-value=14  Score=18.29  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=46.4

Q ss_pred             HHHHHCCCE-EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf             999978989-9998897999999982---799899995041296959999999828576899599999249989999999
Q gi|254780476|r   20 DLIETSGYI-ALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR   95 (123)
Q Consensus        20 ~~l~~~g~~-v~~a~~g~eal~~l~~---~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~   95 (123)
                      +.|...+.. +..+.+.++|+.+++.   .-..  .+.+.|---+.++..+.+|+..  .+--+|-.-+--..++..++.
T Consensus         5 ~~~~~~plvaIlR~~~~~~a~~~~~al~~~Gi~--~iEVTl~tp~a~~~I~~l~~~~--~~~~~iGAGTVlt~e~~~~ai   80 (206)
T PRK09140          5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVKAL--GDDALIGAGTVLSPEQVDRLA   80 (206)
T ss_pred             HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHC--CCCEEEEEEECCCHHHHHHHH
T ss_conf             999859979999589999999999999986998--8999179976999999999967--986599862046799999999


Q ss_pred             HCCCCEEEECCCCHHHHHHH
Q ss_conf             76998899879898999999
Q gi|254780476|r   96 KGGCEAYISKPISLSIFMET  115 (123)
Q Consensus        96 ~~g~~~~l~KPi~~~~L~~~  115 (123)
                      ++|++ |+.-|.-..++.+.
T Consensus        81 ~aGA~-FiVSP~~~~~vi~~   99 (206)
T PRK09140         81 DAGGR-LIVTPNIDPEVIRR   99 (206)
T ss_pred             HCCCC-EEECCCCCHHHHHH
T ss_conf             85999-99999998999999


No 210
>PRK11587 putative phosphatase; Provisional
Probab=61.32  E-value=7.3  Score=19.96  Aligned_cols=107  Identities=15%  Similarity=0.262  Sum_probs=55.4

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCC-----------------CCEEEEEEECCCCCH-HHHH
Q ss_conf             95399899999999999789899998---89799999998279-----------------989999504129695-9999
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQT---RNGMEALELARQHK-----------------PDVIIMDIQLQEISG-LEIT   65 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~a---~~g~eal~~l~~~~-----------------~dlillD~~mp~~dG-~el~   65 (123)
                      +||..+...+.++..++..|......   -.|..++..++...                 +.....+ ..+-..| .+++
T Consensus        14 LvDS~~~~~~a~~~~~~~~gi~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pG~~elL   92 (218)
T PRK11587         14 LVDSLPAVERAWCNWARRHGLAPDEVLAFIHGKQAITSLRHFMAGKSEAEIQAEFTRLEQIEATDTE-GITALPGAIALL   92 (218)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHH
T ss_conf             3349999999999999983989899999963861899999873689878999999999999998545-983794899999


Q ss_pred             HHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCC---CEEE-------ECCCCHHHHHHHHHHH
Q ss_conf             9998285768995999992499899999997699---8899-------8798989999999997
Q gi|254780476|r   66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC---EAYI-------SKPISLSIFMETIKKY  119 (123)
Q Consensus        66 ~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~---~~~l-------~KPi~~~~L~~~i~~~  119 (123)
                      +++++    ..+|+-+.|+...+-........|.   +.|+       .|| .|+-++.++++.
T Consensus        93 ~~L~~----~gi~~avvTs~~~~~~~~~~~~~~l~~~~~~v~~ddv~~~KP-~Pd~yl~A~~~L  151 (218)
T PRK11587         93 NHLNK----AGIPWAIVTSGSMPVASARHKAAGLPAPEVFVTAERVKRGKP-EPDAYLLGAQLL  151 (218)
T ss_pred             HHHHH----CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHC
T ss_conf             99987----799778872682789999997238997869997110557899-868999999982


No 211
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=61.18  E-value=15  Score=18.21  Aligned_cols=90  Identities=12%  Similarity=0.138  Sum_probs=55.1

Q ss_pred             CCEEEEECCC----HHHHHHHHHHHHHC--CCEEEE--------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             8778995399----89999999999978--989999--------889799999998279989999504129695999999
Q gi|254780476|r    2 LKKVMIVEDN----ELNMKLFRDLIETS--GYIALQ--------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ   67 (123)
Q Consensus         2 ~kkiLiVDD~----~~~~~~l~~~l~~~--g~~v~~--------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~   67 (123)
                      .|||-++.+|    ....+.++..++..  |+++..        ..+-...+..++...||+|++-  ...-++..++++
T Consensus       143 ~k~vai~~~d~~~g~~~~~~~~~~~~~~~~g~~vv~~~~~p~~~~~Df~~~i~~i~~~~pd~v~~~--~~~~~~~~~~kq  220 (342)
T cd06329         143 GKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITG--NWGNDLLLLVKQ  220 (342)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHH
T ss_conf             976999369973769999999999998169958876785258887766999999986699999993--775569999999


Q ss_pred             HHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             98285768995999992499899999997
Q gi|254780476|r   68 IKEDSELQEIPVIAVTAFAMKGDEERIRK   96 (123)
Q Consensus        68 ir~~~~~~~ipii~~t~~~~~~~~~~~~~   96 (123)
                      .|+..  -+.|++..+.. ........-+
T Consensus       221 ~~~~g--~~~~~~~~~~~-~~~~~~~~g~  246 (342)
T cd06329         221 AADAG--LKLPFYTPYLD-QPGNPAALGE  246 (342)
T ss_pred             HHHCC--CCCCEEEEECC-CHHHHHHHHH
T ss_conf             99769--99818997078-7789987566


No 212
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=60.89  E-value=15  Score=18.18  Aligned_cols=109  Identities=18%  Similarity=0.334  Sum_probs=63.8

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCC-----CE-----------EEEEEECCCCCH-
Q ss_conf             99539989999999999978989999-------8897999999982799-----89-----------999504129695-
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKP-----DV-----------IIMDIQLQEISG-   61 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~-----dl-----------illD~~mp~~dG-   61 (123)
                      ++||..+...+.+++.+...|+.+..       .....+.+..+.....     +.           ...--..+-+.| 
T Consensus        12 vLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv   91 (221)
T COG0637          12 TLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALELEGLKPIPGV   91 (221)
T ss_pred             CEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             80723999999999999985999888999986277615789999987346664458999999999876413567755119


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf             999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY  119 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~  119 (123)
                      .+++.++|+..    +|+...|++............|..+|+           .|| .|+-++.+.++.
T Consensus        92 ~~~l~~L~~~~----i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP-~Pd~yL~Aa~~L  155 (221)
T COG0637          92 VELLEQLKARG----IPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKP-APDIYLLAAERL  155 (221)
T ss_pred             HHHHHHHHHCC----CCEEEECCCHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCC-CCHHHHHHHHHC
T ss_conf             99999987559----98899749838889999998388331563773210467898-979999999984


No 213
>pfam07688 KaiA KaiA domain. The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure.
Probab=60.79  E-value=15  Score=18.17  Aligned_cols=74  Identities=9%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             95399899999999999789899998897999999982--7998999950412969599999998285768995999992
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      +.=-++...+.++.+|....|.+....++.+.++.+.+  +.+||+++-......   .+..++.+..  --+|.|++-.
T Consensus         5 lll~s~~L~q~~~~~L~~dRY~l~~~~s~~df~~~le~~~e~iDcLvle~~~~~~---~~~~qL~~~G--~LlPaVvl~~   79 (283)
T pfam07688         5 LFVESEAIAQRLRRIFQGDRHYLSTFQSLDDFCAYLEDKRERIDCLILYYEANSL---PVLNRLYEQG--RLLPAILLEP   79 (283)
T ss_pred             EEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCH---HHHHHHHHCC--CCCCEEEEEC
T ss_conf             9828889999999865568558885588889999999572568779995077766---9999999758--5365799715


Q ss_pred             C
Q ss_conf             4
Q gi|254780476|r   85 F   85 (123)
Q Consensus        85 ~   85 (123)
                      .
T Consensus        80 ~   80 (283)
T pfam07688        80 S   80 (283)
T ss_pred             C
T ss_conf             8


No 214
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=60.49  E-value=15  Score=18.14  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             EEEEEEECCC------CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             9999504129------6959999999828576899599999249989999999769988998798
Q gi|254780476|r   49 VIIMDIQLQE------ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        49 lillD~~mp~------~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      ++++|-.|-.      .++.++++.+++.    ..+|+++|+....+...+.+. |+.+.|.-|+
T Consensus       292 LLv~De~lr~~~~~~re~~~~ll~~ve~~----ggkV~Ivs~~he~Ge~Lk~lG-GiaaILRf~v  351 (352)
T COG1537         292 LLVTDELLRSDDVEEREDVEELLEEVESM----GGKVVIVSTEHEPGERLKALG-GIAAILRFPV  351 (352)
T ss_pred             EEEEHHHHCCCCHHHHHHHHHHHHHHHHC----CCEEEEEECCCCCHHHHHHCC-CEEEEEEECC
T ss_conf             88642341463236689999999999973----986999935775067888506-7689998137


No 215
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=60.42  E-value=15  Score=18.14  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC--C---EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHH
Q ss_conf             8778995399899999999999789--8---99-99889799999998279989999504129695-----999999982
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSG--Y---IA-LQTRNGMEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g--~---~v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~   70 (123)
                      .++|-+||=|+...+.-+.+|..+.  +   .+ ....+|.+.++.. .+.||+|++|..=|..-+     .++.+.+++
T Consensus        99 v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~-~~~yDvII~D~~DP~~~~~~Lfs~eFy~~~~~  177 (240)
T pfam01564        99 VEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDY-LVKFDVIIVDSTDPVGPAENLFSKEFYDLLKR  177 (240)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             53899975788999999998798524347985599981689999857-25445899958997653344422999999998


Q ss_pred             CCCCCCCCEEEE
Q ss_conf             857689959999
Q gi|254780476|r   71 DSELQEIPVIAV   82 (123)
Q Consensus        71 ~~~~~~ipii~~   82 (123)
                      .-  +.=-|++.
T Consensus       178 ~L--~~~Gi~v~  187 (240)
T pfam01564       178 AL--KEDGVFVT  187 (240)
T ss_pred             HC--CCCCEEEE
T ss_conf             65--99978999


No 216
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=60.31  E-value=15  Score=18.13  Aligned_cols=82  Identities=17%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             HHHCCCEEEEECCHH--------HHH-HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             997898999988979--------999-99982799899995041296959999999828576899599999249989999
Q gi|254780476|r   22 IETSGYIALQTRNGM--------EAL-ELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        22 l~~~g~~v~~a~~g~--------eal-~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      -...+.++....+|.        .+. +.+.+..||+|+.-.-=|..-|-.-+|.+-++   +..|.|+++.........
T Consensus        27 AdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkd  103 (277)
T COG1927          27 ADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKD  103 (277)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCCHHHH
T ss_conf             14579659996166655868888877999985189889995799899994689998743---599779966886313678


Q ss_pred             HHHHCCCCEEEECC
Q ss_conf             99976998899879
Q gi|254780476|r   93 RIRKGGCEAYISKP  106 (123)
Q Consensus        93 ~~~~~g~~~~l~KP  106 (123)
                      ...+.|+-.++.|+
T Consensus       104 eleeqGlGYIivk~  117 (277)
T COG1927         104 ELEEQGLGYIIVKA  117 (277)
T ss_pred             HHHHCCCEEEEECC
T ss_conf             99865870799627


No 217
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=60.31  E-value=7.9  Score=19.77  Aligned_cols=69  Identities=16%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             987789953998999999999997898999--988979999999827998999950412969599999998285
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS   72 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~   72 (123)
                      |.++|.-||-++...+..+..|...|+.-.  ...+|.+++.  ...+||.|++....+... -.+.++++...
T Consensus        99 l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~--~~~pfD~Iii~~a~~~~P-~~l~~qL~~gG  169 (213)
T PRK00312         99 LVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWP--AYAPFDRILVTAAAPEIP-RALLDQLAEGG  169 (213)
T ss_pred             HCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCHHHH-HHHHHHCCCCC
T ss_conf             629289994289999999999998499876999688766787--669724899984341225-99998453297


No 218
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=59.94  E-value=15  Score=18.09  Aligned_cols=74  Identities=9%  Similarity=0.130  Sum_probs=50.7

Q ss_pred             CEEEEECCHHHHH---HHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC
Q ss_conf             8999988979999---9998279989999504129695---999999982857689959999924998999999976998
Q gi|254780476|r   27 YIALQTRNGMEAL---ELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE  100 (123)
Q Consensus        27 ~~v~~a~~g~eal---~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~  100 (123)
                      |+...-.+-....   +.+++.-+..+++++.-|....   |+-+++||+.-   +.|+|+ -+--..+|..++.+.|++
T Consensus       120 fQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~---~~p~i~-KGi~~~~DA~~a~~~G~d  195 (299)
T cd02809         120 FQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW---KGPLIL-KGILTPEDALRAVDAGAD  195 (299)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCEEE-ECCCCHHHHHHHHHCCCC
T ss_conf             7764369999999999999985999899970589878879999999999866---998799-727889999999985998


Q ss_pred             EEEE
Q ss_conf             8998
Q gi|254780476|r  101 AYIS  104 (123)
Q Consensus       101 ~~l~  104 (123)
                      +++.
T Consensus       196 gI~V  199 (299)
T cd02809         196 GIVV  199 (299)
T ss_pred             EEEE
T ss_conf             8997


No 219
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=59.85  E-value=16  Score=18.08  Aligned_cols=64  Identities=27%  Similarity=0.333  Sum_probs=46.2

Q ss_pred             CCEEEEECCCHHH----HHHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             8778995399899----99999999978989999889---------7999999982799899995041296959999999
Q gi|254780476|r    2 LKKVMIVEDNELN----MKLFRDLIETSGYIALQTRN---------GMEALELARQHKPDVIIMDIQLQEISGLEITKQI   68 (123)
Q Consensus         2 ~kkiLiVDD~~~~----~~~l~~~l~~~g~~v~~a~~---------g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i   68 (123)
                      .||+|||-|....    .+-+...|...|.++...++         ..++++.++++.||+|+-   +-+.+-.+.++.|
T Consensus       482 ~kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~~~~~~~~D~IIa---lGGGS~iDaAKai  558 (862)
T PRK13805        482 KKRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIA---LGGGSPMDAAKIM  558 (862)
T ss_pred             CCEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHH
T ss_conf             9779998785187678899999999986983999669899939799999999998649999999---4783488999999


No 220
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=59.65  E-value=16  Score=18.06  Aligned_cols=87  Identities=10%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             HHHHHCCCE-EEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf             999978989-9998897999999982---799899995041296959999999828576899599999249989999999
Q gi|254780476|r   20 DLIETSGYI-ALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR   95 (123)
Q Consensus        20 ~~l~~~g~~-v~~a~~g~eal~~l~~---~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~   95 (123)
                      .+|+..+.. +....+.++|.+.++.   .-..+  +.+.|-.-+.++..+++|+..  .++ +|..-+-...+...++.
T Consensus         3 ~~L~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~--iEiTl~t~~a~~~I~~l~~~~--p~~-~iGaGTV~~~e~~~~a~   77 (196)
T pfam01081         3 SILREAKIVPVIVIKDKEDALPLAEALAAGGIRV--LEVTLRTPCALDAIRLLRKNR--PDA-LVGAGTVLNAQQLAEAA   77 (196)
T ss_pred             HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHH
T ss_conf             7896699799997799999999999999879988--999479827999999999649--996-79998376899999999


Q ss_pred             HCCCCEEEECCCCHHHH
Q ss_conf             76998899879898999
Q gi|254780476|r   96 KGGCEAYISKPISLSIF  112 (123)
Q Consensus        96 ~~g~~~~l~KPi~~~~L  112 (123)
                      ++|++ |+.-|..-.++
T Consensus        78 ~aGA~-FivSP~~~~~v   93 (196)
T pfam01081        78 EAGAQ-FVVSPGLTADL   93 (196)
T ss_pred             HCCCC-EEECCCCHHHH
T ss_conf             74999-99978763999


No 221
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=59.60  E-value=16  Score=18.05  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=44.2

Q ss_pred             HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             99999999789899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r   16 KLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus        16 ~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      .-+.++-+..||.+..+..|.-|.+.+++.+|+.|+-=--.     .++.+.++.... ..+|+..+-
T Consensus        76 ~~l~~la~~~G~~v~i~~Ggt~~rkii~~~~p~~IigVAC~-----~dL~~gi~~~~~-~~ip~~gV~  137 (158)
T pfam01976        76 GDLKELAEEYGYKVYIVPGGTFAKKIIKEYRPKAIIGVACE-----RDLNEGIQDLKK-KGIPVQGVL  137 (158)
T ss_pred             HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEEECH-----HHHHHHHHHHHC-CCCCEEEEE
T ss_conf             27999999809879996482899999987299989999204-----899999998650-899869997


No 222
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.53  E-value=16  Score=18.05  Aligned_cols=100  Identities=16%  Similarity=0.081  Sum_probs=61.2

Q ss_pred             EE-EECCC--HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEEC-CCCCHHHHHHHHHHCCC--CCCC
Q ss_conf             89-95399--899999999999789899998897999999982-799899995041-29695999999982857--6899
Q gi|254780476|r    5 VM-IVEDN--ELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQL-QEISGLEITKQIKEDSE--LQEI   77 (123)
Q Consensus         5 iL-iVDD~--~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~m-p~~dG~el~~~ir~~~~--~~~i   77 (123)
                      |- |--|.  .-..+.++.+-.-.|..+..+.+..+.-+.+.. ..+|+|++|.-= ...| .+...++++.-.  ..+.
T Consensus       209 V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D~IlIDTAGrs~~d-~~~~~el~~~~~~~~~~~  287 (388)
T PRK12723        209 IKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLIDTIGKSPKD-FMKLAEMKELLNACGRDA  287 (388)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHHHHHCCCCC
T ss_conf             7999807875889999999999978806985788999999997249999999589988568-999999999997418984


Q ss_pred             CE-EEEEECCCHHHHHHHHH----CCCCEE-EEC
Q ss_conf             59-99992499899999997----699889-987
Q gi|254780476|r   78 PV-IAVTAFAMKGDEERIRK----GGCEAY-ISK  105 (123)
Q Consensus        78 pi-i~~t~~~~~~~~~~~~~----~g~~~~-l~K  105 (123)
                      .+ +++++.....+..+..+    .|.+++ ++|
T Consensus       288 ~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I~TK  321 (388)
T PRK12723        288 EFHLAVSSTTKTSDIKEIFHQFSPFSYKTVIFTK  321 (388)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             5999987989999999999984279998499983


No 223
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=58.91  E-value=16  Score=17.98  Aligned_cols=102  Identities=17%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             HHHHH--HHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99999--99999789899998897--99999998279989999504129695-----99999998285768995999992
Q gi|254780476|r   14 NMKLF--RDLIETSGYIALQTRNG--MEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        14 ~~~~l--~~~l~~~g~~v~~a~~g--~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      ..+.+  .+.|-..||.|....+.  .-|.++..-  =-..++=+.-|-.+|     ...++.|++..   ++|||+=-+
T Consensus       108 ~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLed~--Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIVDAG  182 (246)
T pfam05690       108 PIETLKAAEILVKEGFTVLPYTTDDPVLARRLEEA--GCAAVMPLGAPIGSGLGLRNPENLRIIIEEA---DVPVIVDAG  182 (246)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC
T ss_conf             78999999999978998988617998999999875--9849862244013688868999999999967---998898489


Q ss_pred             CCCHHHHHHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf             499899999997699889987-----989899999999974
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAYISK-----PISLSIFMETIKKYI  120 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l  120 (123)
                      -..+.+..+++++|+++.|.-     --++-.+-+.++.++
T Consensus       183 iG~pS~Aa~aMElG~DaVLvNTAIA~A~dPv~MA~A~~~Av  223 (246)
T pfam05690       183 IGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFKLAV  223 (246)
T ss_pred             CCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             89678899999745677773067773799899999999999


No 224
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.79  E-value=16  Score=17.97  Aligned_cols=99  Identities=15%  Similarity=0.255  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             99999999978989-9998897999999982-799899995041296959999999828576899599999249989999
Q gi|254780476|r   15 MKLFRDLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        15 ~~~l~~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      ++-+-..|+..+.. +....+.+++..+++. ..=.+=++.+.|-.-++++..+.+++..  .++ +|..-+-...+...
T Consensus         5 ~~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~--p~~-~vGaGTVl~~e~~~   81 (212)
T PRK06015          5 TEKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEV--EEA-IVGAGTILNAKQFE   81 (212)
T ss_pred             HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC--CCC-EEEEEECCCHHHHH
T ss_conf             999999998799799997799999999999999879988999689951999999999869--996-79542115699999


Q ss_pred             HHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             9997699889987989899999999
Q gi|254780476|r   93 RIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        93 ~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      ++.++|++ |+.-|.-..++.+.-+
T Consensus        82 ~a~~aGA~-FiVSP~~~~~v~~~a~  105 (212)
T PRK06015         82 DAAKAGSR-FIVSPGTTQELLAAAN  105 (212)
T ss_pred             HHHHCCCC-EEECCCCCHHHHHHHH
T ss_conf             99984998-9985899999999999


No 225
>PRK11574 hypothetical protein; Provisional
Probab=58.60  E-value=11  Score=18.83  Aligned_cols=84  Identities=14%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             CCCEEEEE-CCCHHH--HHHHHHHHHHCCCEEEEECCHHH-----------------HHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             98778995-399899--99999999978989999889799-----------------99999827998999950412969
Q gi|254780476|r    1 MLKKVMIV-EDNELN--MKLFRDLIETSGYIALQTRNGME-----------------ALELARQHKPDVIIMDIQLQEIS   60 (123)
Q Consensus         1 m~kkiLiV-DD~~~~--~~~l~~~l~~~g~~v~~a~~g~e-----------------al~~l~~~~~dlillD~~mp~~d   60 (123)
                      |+||+||. -|--..  .-...++|.+.|++|..++=+.+                 .++-+....||+|++=-.||+.+
T Consensus         1 M~kk~LV~lA~GfEEiEa~~~vDvLRRagi~V~~asv~~~~~~~v~gs~gi~i~aD~~l~~v~~~~yD~ivlPGG~~ga~   80 (196)
T PRK11574          1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLTITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAE   80 (196)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCEEECCCCHHHCCCCCCCEEECCCCCHHHH
T ss_conf             98569999169850212518999997779849999853899737994799789578677777825588899178803799


Q ss_pred             HHH----HHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             599----9999982857689959999924
Q gi|254780476|r   61 GLE----ITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        61 G~e----l~~~ir~~~~~~~ipii~~t~~   85 (123)
                      -+.    +.+.+|+... +.-+|-++-+.
T Consensus        81 ~L~~~~~v~~~lk~~~~-~gK~iAAICAa  108 (196)
T PRK11574         81 CFRDSPLLVETVKQFHR-SGRIVAAICAA  108 (196)
T ss_pred             HHHHCHHHHHHHHHHHH-CCCEEEEECHH
T ss_conf             98739899999999998-79919998240


No 226
>PRK13140 consensus
Probab=58.50  E-value=16  Score=17.94  Aligned_cols=47  Identities=17%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             9999999828576899599999249------9899999997699889987989899
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI  111 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~  111 (123)
                      +++++++|+.   .++|++++|.++      .+....++.++|+++.+.--+.+++
T Consensus        79 ~~~~~~~r~~---~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee  131 (257)
T PRK13140         79 FEQLKDIRKE---VQIPLILMGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDD  131 (257)
T ss_pred             HHHHHHHHCC---CCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             9999997436---8988899905599985179999999998499869835998567


No 227
>PRK13175 consensus
Probab=58.37  E-value=16  Score=17.93  Aligned_cols=71  Identities=14%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC----HH------HHHHHHHHC
Q ss_conf             87789953998999999999997898999988979999999827998999950412969----59------999999828
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS----GL------EITKQIKED   71 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~d----G~------el~~~ir~~   71 (123)
                      |+||.|+|=..-+..-+.+.|+..|+++....+..+.      ..+|.+++    |+..    +.      .+...|++.
T Consensus         1 M~kI~IiD~g~gn~~si~~al~~lg~~~~i~~~~~~i------~~~d~lIL----PGvGsf~~~~~~l~~~~l~~~i~~~   70 (206)
T PRK13175          1 MPKIAVIDYGMGNLHSVCKALERLGAEPILTSDPADL------LAADALIL----PGVGAFDPAMQNLRSRGLIPPIKDA   70 (206)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHH------HCCCEEEE----CCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf             9879999799768999999999879989997998998------32892896----8998526788755531871689999


Q ss_pred             CCCCCCCEEEEE
Q ss_conf             576899599999
Q gi|254780476|r   72 SELQEIPVIAVT   83 (123)
Q Consensus        72 ~~~~~ipii~~t   83 (123)
                      - ....||+.+-
T Consensus        71 ~-~~g~PiLGIC   81 (206)
T PRK13175         71 I-ASGKPFLGIC   81 (206)
T ss_pred             H-HCCCCEEEEE
T ss_conf             8-5699779986


No 228
>PHA02518 ParA-like protein; Provisional
Probab=58.35  E-value=16  Score=17.93  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=32.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH--CC-CEEEEECCHHHHHHHHH--HCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             87789953998999999999997--89-89999889799999998--27998999950412969599999998
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET--SG-YIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLEITKQIK   69 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~--~g-~~v~~a~~g~eal~~l~--~~~~dlillD~~mp~~dG~el~~~ir   69 (123)
                      .+|||+||=||.-  .....+..  .+ -.+....-+......+.  ...||.|++|.  |...|..+...+.
T Consensus        29 G~~VlliD~DpQ~--s~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~viID~--pp~~~~~~~~al~   97 (211)
T PHA02518         29 GHKVLLVDLDPQG--SSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDG--APQDSELARAALR   97 (211)
T ss_pred             CCCEEEEECCCCC--CHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHH
T ss_conf             9948999779996--7889998522689974012136779999997406788899889--9974299999999


No 229
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308   These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=57.73  E-value=16  Score=18.05  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=53.2

Q ss_pred             ECCCHHHHHHHHHHHHHCCCEEEEECCHHHH-HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf             5399899999999999789899998897999-9999827998999950412969599999998285768
Q gi|254780476|r    8 VEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQ   75 (123)
Q Consensus         8 VDD~~~~~~~l~~~l~~~g~~v~~a~~g~ea-l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~   75 (123)
                      |+|-....++|.++.+-.+-.|.+|.||... +..++.+--..-+.++.+|-+|-++|+|.|  +|.++
T Consensus       266 l~n~~~~~~vL~k~~~f~~d~ilVAHNGasFD~~Fl~~~~~k~~~~~~~~p~IDTL~Lar~l--nP~y~  332 (1264)
T TIGR01405       266 LENAPEIEEVLEKFKEFLKDSILVAHNGASFDIGFLNTNFEKVGLEPLENPVIDTLELARAL--NPEYK  332 (1264)
T ss_pred             HCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--CCCCC
T ss_conf             37984178999999997697588862761036688988987627742336511388999983--73113


No 230
>PRK03612 spermidine synthase; Provisional
Probab=57.67  E-value=17  Score=17.86  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             CEEEEECCCHHHHHHHHHH--HHHCCC------EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH------HHHHHH
Q ss_conf             7789953998999999999--997898------999-9889799999998279989999504129695------999999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDL--IETSGY------IAL-QTRNGMEALELARQHKPDVIIMDIQLQEISG------LEITKQ   67 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~--l~~~g~------~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG------~el~~~   67 (123)
                      ++|-+||=|+...+..++.  |..++.      .+. ...||-.-++.. .++||+|++|..=|...+      -|+.+.
T Consensus       318 e~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~-~~~yDvIi~D~pdP~~~~~~~LYs~eFY~~  396 (516)
T PRK03612        318 EQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-PETFDAIIVDLPDPSNPALGKLYSVEFYRL  396 (516)
T ss_pred             CEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf             6378995188999999857214444123234996489853789999868-887888998189979952246753999999


Q ss_pred             HHHCCCCCCCCEEEE
Q ss_conf             982857689959999
Q gi|254780476|r   68 IKEDSELQEIPVIAV   82 (123)
Q Consensus        68 ir~~~~~~~ipii~~   82 (123)
                      +|+.-  +.=-+++.
T Consensus       397 ~~~~L--~~~G~~v~  409 (516)
T PRK03612        397 LKRRL--APDGLLVV  409 (516)
T ss_pred             HHHHC--CCCCEEEE
T ss_conf             99844--99958999


No 231
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=57.60  E-value=17  Score=17.85  Aligned_cols=68  Identities=25%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             9799999998279989999504129-695--9999999828576899599999249989999999769988998
Q gi|254780476|r   34 NGMEALELARQHKPDVIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        34 ~g~eal~~l~~~~~dlillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      +..+.++.+....-.++++|+.--+ +.|  +++++++++..   ++|+++--+-...++..++.+.|+++.+.
T Consensus       147 ~~~~~~~~~~~~~~eii~t~Id~dGt~~G~d~~l~~~i~~~~---~~pvi~sGGv~s~~di~~l~~~g~~gviv  217 (233)
T cd04723         147 GPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA---DIPVIAAGGVRSVEDLELLKKLGASGALV  217 (233)
T ss_pred             CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             899999999965895999864344656777999999999868---99899988999999999999789989998


No 232
>PRK09165 replicative DNA helicase; Provisional
Probab=57.10  E-value=16  Score=17.93  Aligned_cols=68  Identities=25%  Similarity=0.300  Sum_probs=39.8

Q ss_pred             HHHHHHCCCEEEEEC--CHHH----HHHHHHHCCCCEEEEEEE--CC--CCC-H----H---HHHHHHHHCCCCCCCCEE
Q ss_conf             999997898999988--9799----999998279989999504--12--969-5----9---999999828576899599
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGME----ALELARQHKPDVIIMDIQ--LQ--EIS-G----L---EITKQIKEDSELQEIPVI   80 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~e----al~~l~~~~~dlillD~~--mp--~~d-G----~---el~~~ir~~~~~~~ipii   80 (123)
                      ..-+..+++.+....  +-.+    +..+-+++..++|++|+-  |.  ... +    .   ++.+.+|....--++|||
T Consensus       296 ~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livIDYLqLi~~~~~~~~~~R~~ev~~Isr~LK~lAkel~ipVi  375 (484)
T PRK09165        296 SQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVIDYLQLIRGSSKRSQDNRVQEISEITQGLKALAKELNIPVI  375 (484)
T ss_pred             HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             99997198489779998799999999999986099889995176357888886121999999999999999999699699


Q ss_pred             EEEECC
Q ss_conf             999249
Q gi|254780476|r   81 AVTAFA   86 (123)
Q Consensus        81 ~~t~~~   86 (123)
                      ++|=-+
T Consensus       376 ~LsQLn  381 (484)
T PRK09165        376 ALSQLS  381 (484)
T ss_pred             EECCCC
T ss_conf             974578


No 233
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854    Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP .  5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O   This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.  ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=56.89  E-value=17  Score=17.78  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=23.9

Q ss_pred             CEEEEECCC---HHHHHHHHHHHHHCCC-EEEEE-CCH
Q ss_conf             778995399---8999999999997898-99998-897
Q gi|254780476|r    3 KKVMIVEDN---ELNMKLFRDLIETSGY-IALQT-RNG   35 (123)
Q Consensus         3 kkiLiVDD~---~~~~~~l~~~l~~~g~-~v~~a-~~g   35 (123)
                      |||+||||+   -++.+.+..++...|- +|... .+.
T Consensus       361 krVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasP  398 (467)
T TIGR01134       361 KRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASP  398 (467)
T ss_pred             CEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             75899942412071378999999872983898762588


No 234
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.88  E-value=17  Score=17.78  Aligned_cols=72  Identities=26%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHCCC-CEEEEEEECCC-CCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE-EECCC
Q ss_conf             897999999982799-89999504129-695--99999998285768995999992499899999997699889-98798
Q gi|254780476|r   33 RNGMEALELARQHKP-DVIIMDIQLQE-ISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY-ISKPI  107 (123)
Q Consensus        33 ~~g~eal~~l~~~~~-dlillD~~mp~-~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~-l~KPi  107 (123)
                      -+..+.++.+..... .+++.|+.--+ +.|  +++++++.+.   .++|||+--+-...+|..++.+.|+++. +-|-+
T Consensus       148 ~~~~d~~~~~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~~---~~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkAl  224 (234)
T PRK13587        148 LNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA  224 (234)
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf             6799999999743987899840266574557999999999976---7999999899899999999998899899999750


No 235
>pfam06073 DUF934 Bacterial protein of unknown function (DUF934). This family consists of several bacterial proteins of unknown function. One of the members of this family is thought to be an oxidoreductase.
Probab=56.42  E-value=18  Score=17.74  Aligned_cols=74  Identities=5%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             HHCCCCEEEEEEECCC---CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHH
Q ss_conf             8279989999504129---695999999982857689959999924998999999976998899879-898999999999
Q gi|254780476|r   43 RQHKPDVIIMDIQLQE---ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKK  118 (123)
Q Consensus        43 ~~~~~dlillD~~mp~---~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP-i~~~~L~~~i~~  118 (123)
                      ...-..+-++.+..|.   .-||..++.+|+...++.-  |--++.-..+-...+...|++.|..++ .+++..++.++.
T Consensus        14 ~~~L~~l~lI~i~Fp~f~DGRgfS~Ar~LR~r~gy~Ge--lRA~G~vl~DQl~~~~R~Gfdsf~l~~~~~~~~a~~~l~~   91 (110)
T pfam06073        14 APDLDRLALIALDFPAFTDGRGYSQARLLRERYGYKGE--LRAVGDVLRDQLFFMLRCGFDSFALRADKDLEDALKALDR   91 (110)
T ss_pred             HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCC--EEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf             87545576799988987686240799999997199871--5774450098999999759887975698899999988620


No 236
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=56.38  E-value=18  Score=17.73  Aligned_cols=105  Identities=16%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHH---HHHCCCCEEEEEEEC----CCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             53998999999999997898999--98897999999---982799899995041----2969599999998285768995
Q gi|254780476|r    8 VEDNELNMKLFRDLIETSGYIAL--QTRNGMEALEL---ARQHKPDVIIMDIQL----QEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         8 VDD~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~---l~~~~~dlillD~~m----p~~dG~el~~~ir~~~~~~~ip   78 (123)
                      ++|.+...+. -.-|...|+.+.  -..+|-..+..   ++..++|.+=+|-.+    |+-  -.+.+.|......-.+.
T Consensus       603 m~d~e~a~~~-L~~Lr~lGV~IALDDFGTGYSSLsYLs~Lk~LPID~LKIDRSFV~~L~~D--~aiv~aIiaLA~~LgL~  679 (728)
T PRK11829        603 IQDLDEALRL-LRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPED--DAIARIISCVSDVLKVR  679 (728)
T ss_pred             HCCHHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECHHHHCCCCCC--HHHHHHHHHHHHHCCCE
T ss_conf             2299999999-99999789989996988743638999874169999770796886578888--99999999999987996


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHH
Q ss_conf             99999249989999999769988----998798989999999
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMETI  116 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~i  116 (123)
                      +|+ -|-...+......+.|++.    |+.||+..++|.+.-
T Consensus       680 VVA-EGVET~eQl~~L~~lGCd~~QGYlFSkPLP~dEFEarY  720 (728)
T PRK11829        680 VMA-EGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY  720 (728)
T ss_pred             EEE-ECCCHHHHHHHHHHCCCCEECCCEECCCCCHHHHHHHH
T ss_conf             999-67980999999997699975468426689999999999


No 237
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.35  E-value=18  Score=17.73  Aligned_cols=103  Identities=10%  Similarity=0.112  Sum_probs=63.8

Q ss_pred             CCEEEEECCCH---HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHCC----C
Q ss_conf             87789953998---9999999999978989999889799999998279989999504-12969599999998285----7
Q gi|254780476|r    2 LKKVMIVEDNE---LNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-LQEISGLEITKQIKEDS----E   73 (123)
Q Consensus         2 ~kkiLiVDD~~---~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-mp~~dG~el~~~ir~~~----~   73 (123)
                      .|||-+|--|.   -..+.++.+-+-.|.-+..+.+..+..+.+..+..|+||+|.- +...|- .-+.+++..-    .
T Consensus       252 ~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlILIDTAGrS~rd~-~~~~eL~~ll~~~~~  330 (432)
T PRK12724        252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGE  330 (432)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCCH-HHHHHHHHHHHHHCC
T ss_conf             9927999526653779999999999859945995189999999985699999992999897899-999999999986366


Q ss_pred             CCCC-CEEEEEECCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf             6899-599999249989999999----7699889-987
Q gi|254780476|r   74 LQEI-PVIAVTAFAMKGDEERIR----KGGCEAY-ISK  105 (123)
Q Consensus        74 ~~~i-pii~~t~~~~~~~~~~~~----~~g~~~~-l~K  105 (123)
                      ...+ ..+++|+.....+.....    ..+.+++ ++|
T Consensus       331 ~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfTK  368 (432)
T PRK12724        331 KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK  368 (432)
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             78851799997889989999999984269998499971


No 238
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=55.47  E-value=18  Score=17.64  Aligned_cols=83  Identities=27%  Similarity=0.240  Sum_probs=49.1

Q ss_pred             CCEEEEECCCHH----HHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             877899539989----99999999997898999988---------97999999982799899995041296959999999
Q gi|254780476|r    2 LKKVMIVEDNEL----NMKLFRDLIETSGYIALQTR---------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQI   68 (123)
Q Consensus         2 ~kkiLiVDD~~~----~~~~l~~~l~~~g~~v~~a~---------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~i   68 (123)
                      .+|+|||-|...    ..+.+...|+..|+++....         +-.++++.++++.+|+|+-=   -+.+-++.++.+
T Consensus        22 g~r~llVt~~~~~~~g~~~~l~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai---GGGS~iD~aK~i   98 (312)
T pfam00465        22 GARALIVTDPSLKKLGLLDRVLDSLEEAGIEVVVFDGVEPNPTLEEVDEAAAAAREEGADVIIAV---GGGSVIDTAKAI   98 (312)
T ss_pred             CCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHH
T ss_conf             99799998958566763999999999749949998582799999999999999996499899980---897612499999


Q ss_pred             HH---------------CCCCCCCCEEEEEECCC
Q ss_conf             82---------------85768995999992499
Q gi|254780476|r   69 KE---------------DSELQEIPVIAVTAFAM   87 (123)
Q Consensus        69 r~---------------~~~~~~ipii~~t~~~~   87 (123)
                      .-               ....+.+|+|.+-+-..
T Consensus        99 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag  132 (312)
T pfam00465        99 ALLLTNPGDVWDYLGGKKLTKPALPLIAIPTTAG  132 (312)
T ss_pred             HHHHCCCCCHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf             9997199988998557655567898899717866


No 239
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=55.11  E-value=19  Score=17.61  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             77899539989999999999978989999-8897999999982799899995041
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQL   56 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~m   56 (123)
                      -+|.-+|-++.-.+.+++.++..|..+.. ..++...-....+..||.|++|.-=
T Consensus       270 ~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILlDaPC  324 (428)
T PRK10901        270 AQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC  324 (428)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEECCCC
T ss_conf             9289996988899999999997599739997765572331344567879975898


No 240
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=55.10  E-value=19  Score=17.61  Aligned_cols=93  Identities=15%  Similarity=0.206  Sum_probs=68.9

Q ss_pred             EECCCHHHHHHHHHHHHHCC-CE------EEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf             95399899999999999789-89------999889799999998279989999504129-69599999998285768995
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSG-YI------ALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g-~~------v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ip   78 (123)
                      +-.|...+.+.++++.+..+ ..      +..+.+..+|++.+.+--+|-|+..-+=+. .+|.++++++.+..   +=+
T Consensus        95 L~~dg~iD~~~~~~Li~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~~~~A~~G~~~L~~L~~~a---~~~  171 (248)
T PRK11572         95 LDVDGHVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILTSGQQSDAEQGLSLIMELIAQG---DAP  171 (248)
T ss_pred             ECCCCCCCHHHHHHHHHHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC---CCC
T ss_conf             88999849999999999748980798620221499999999999759998988999787778899999999844---996


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             999992499899999997699889
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +|+--+.-......+..+.|+..|
T Consensus       172 iIm~GgGV~~~Ni~~~~~tG~~ei  195 (248)
T PRK11572        172 IIMAGAGVRAENLQKFLDAGVREV  195 (248)
T ss_pred             EEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             898789989999999997597789


No 241
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.06  E-value=19  Score=17.60  Aligned_cols=80  Identities=13%  Similarity=0.047  Sum_probs=52.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC--CCEEEEEEECCCCCHH-HHHHHHHHCCCCCCC
Q ss_conf             9877899539989999999999978989999889799999998279--9899995041296959-999999828576899
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL-EITKQIKEDSELQEI   77 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~--~dlillD~~mp~~dG~-el~~~ir~~~~~~~i   77 (123)
                      |+|||||.--+.-.=..+...|...|+.+..+.--++.++.+.++.  ..+.+.-...-+.+.. ++++++.+..  ..+
T Consensus         1 M~~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~--g~i   78 (256)
T PRK07024          1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAH--GCP   78 (256)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHH--CCC
T ss_conf             999899984602999999999998899899998988999999997679976999811799999999999999983--998


Q ss_pred             CEEEE
Q ss_conf             59999
Q gi|254780476|r   78 PVIAV   82 (123)
Q Consensus        78 pii~~   82 (123)
                      -+++.
T Consensus        79 Dilin   83 (256)
T PRK07024         79 DVVIA   83 (256)
T ss_pred             CEEEE
T ss_conf             79998


No 242
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=54.70  E-value=19  Score=17.57  Aligned_cols=40  Identities=13%  Similarity=0.217  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHCCCCEE
Q ss_conf             599999998285768995999992499-899999997699889
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAY  102 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~-~~~~~~~~~~g~~~~  102 (123)
                      -|+++++|++.  .+++|+++.-++.. .++..++.+.|+.-+
T Consensus       189 ~~d~l~~I~~~--v~~vPLVLHGgSG~~~e~i~~ai~~Gi~Kv  229 (293)
T PRK07315        189 DLDHLEKLTEA--VPGFPIVLHGGSGIPDDQIQEAIKLGVAKV  229 (293)
T ss_pred             CHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf             89999999851--799857975899999999999998195588


No 243
>PRK13180 consensus
Probab=54.67  E-value=19  Score=17.57  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf             877899539989999999999978989999889799999998279989999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM   52 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlill   52 (123)
                      ||||.|||=..-+..-+.+.|+..|+.+....+..+.-      .+|.+++
T Consensus         1 MkkI~IiDyg~gNi~Sv~~al~~~g~~~~i~~~~~~~~------~~d~lIl   45 (209)
T PRK13180          1 MKRVVVLDYGSGNLRSAQRALERVGAEVEVTADPDAAL------NADGLVV   45 (209)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHH------HCCEEEE
T ss_conf             97799997894389999999998699899979999995------3896899


No 244
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=54.26  E-value=19  Score=17.53  Aligned_cols=71  Identities=18%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----HHH----HHHHHCCC
Q ss_conf             8778995399899999999999789899998897999999982799899995041296959----999----99982857
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL----EIT----KQIKEDSE   73 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~----el~----~~ir~~~~   73 (123)
                      ||+|.|+|=-.-+...+.+.|+..|+.+....+.++.      ..+|.+++    |+...+    +-+    ..|++.. 
T Consensus         1 Mk~I~Iid~G~~n~~si~~~l~~lg~~~~i~~~~~~l------~~~d~iIL----PGvG~~~~~~~~l~~~~~~i~~~~-   69 (201)
T PRK13143          1 MKMIVIIDYGLGNLRSVSKGLERAGADVEITSDPEEI------LSADGIVL----PGVGAFGDVMENLGPLKETINEAV-   69 (201)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHH------HHCCEEEE----CCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf             9889999889719999999999869859992899998------43796797----388818899987651579999999-


Q ss_pred             CCCCCEEEEE
Q ss_conf             6899599999
Q gi|254780476|r   74 LQEIPVIAVT   83 (123)
Q Consensus        74 ~~~ipii~~t   83 (123)
                      .+..||+.+=
T Consensus        70 ~~~~PiLGIC   79 (201)
T PRK13143         70 DDGKPFLGIC   79 (201)
T ss_pred             HCCCCEEEEE
T ss_conf             8699879980


No 245
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate.  GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP.  GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=54.01  E-value=20  Score=17.50  Aligned_cols=73  Identities=18%  Similarity=0.234  Sum_probs=49.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC----CCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             899539989999999999978989999889799999998279989999504129----6959999999828576899599
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE----ISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~----~dG~el~~~ir~~~~~~~ipii   80 (123)
                      |+|||--..+..-+.+.|+..|+++....+-.. .+.+....||-|++.-. |+    .+-..+.+++.+    ..+|++
T Consensus         1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~-~~~~~~~~~dgvils~G-P~~~~~~~~~~~~~~i~~----~~~Pil   74 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTP-LEEIKLKNPKGIILSGG-PSSVYEEDAPRVDPEIFE----LGVPVL   74 (181)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHCCCCEEEECCC-CCCCCCCCCCHHHHHHHH----CCCCEE
T ss_conf             799999863899999999977994999969999-89997349898998999-998555798333099984----799999


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780476|r   81 AVT   83 (123)
Q Consensus        81 ~~t   83 (123)
                      .+-
T Consensus        75 GIC   77 (181)
T cd01742          75 GIC   77 (181)
T ss_pred             EEH
T ss_conf             985


No 246
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.81  E-value=20  Score=17.49  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             CEEE-EECCCHH---HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             7789-9539989---9999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVM-IVEDNEL---NMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiL-iVDD~~~---~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      |||- +-+|++.   .++.++..++..|+++...       .+-...+..+++..||.|++-..  ..++..++++.|+.
T Consensus       141 kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~--~~~~~~~~kqa~~~  218 (351)
T cd06334         141 KKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGW--GVMNPVAIKEAKRV  218 (351)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHC
T ss_conf             7899995686276899999999999769979888806999835899999999769899999377--37899999999975


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             57689959999924998999999976998899
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      . + +.|++..+....+.....+-+. +++++
T Consensus       219 G-~-~~~~ig~~~~~~~~~~~~aG~a-a~G~~  247 (351)
T cd06334         219 G-L-DDKFIGNWWSGDEEDVKPAGDA-AKGYK  247 (351)
T ss_pred             C-C-CCCEEEEECCCCHHHHHHHHHH-CCCEE
T ss_conf             9-9-9857975167889999972111-17738


No 247
>PRK13561 putative phosphodiesterase; Provisional
Probab=53.15  E-value=20  Score=17.42  Aligned_cols=102  Identities=16%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHH---CCCCEEEEEEEC----CCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             98999999999997898999--98897999999982---799899995041----2969599999998285768995999
Q gi|254780476|r   11 NELNMKLFRDLIETSGYIAL--QTRNGMEALELARQ---HKPDVIIMDIQL----QEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~v~--~a~~g~eal~~l~~---~~~dlillD~~m----p~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      +..........|+..|+.+-  -..+|-..+..++.   -++|.+=+|-.+    |+  .-.+++.|-+..+.-.+++|+
T Consensus       532 ~~~~~~~~l~~Lr~~Gv~ialDDFGtGySSL~yL~~~~~Lpid~lKID~sfv~~l~~--d~~iv~aii~la~~lgl~vIA  609 (651)
T PRK13561        532 DPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPE--DSSMVAAIIMLAQSLNLQMIA  609 (651)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCEEEECHHHHCCCCC--CHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999999978999999899996420999853467999979889899738866--399999999999987995999


Q ss_pred             EEECCCHHHHHHHHHCCCCE----EEECCCCHHHHHHH
Q ss_conf             99249989999999769988----99879898999999
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEA----YISKPISLSIFMET  115 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~----~l~KPi~~~~L~~~  115 (123)
                       .|-..++......+.|++.    |+.||+..++|...
T Consensus       610 -EGVEt~~q~~~L~~lGcd~~QGy~fs~Plp~~eFe~~  646 (651)
T PRK13561        610 -EGVETEAQRDWLAKAGVGVAQGFLFARPLPIEIFEER  646 (651)
T ss_pred             -ECCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
T ss_conf             -2688499999999769998756813748999999998


No 248
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=53.15  E-value=20  Score=17.42  Aligned_cols=97  Identities=15%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             HHHHHHCCCEEEEECC--HHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf             9999978989999889--799999998279989999504129695-----999999982857689959999924998999
Q gi|254780476|r   19 RDLIETSGYIALQTRN--GMEALELARQHKPDVIIMDIQLQEISG-----LEITKQIKEDSELQEIPVIAVTAFAMKGDE   91 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~~--g~eal~~l~~~~~dlillD~~mp~~dG-----~el~~~ir~~~~~~~ipii~~t~~~~~~~~   91 (123)
                      .+.|-..||.|....+  ..-|.++..-  =-..+|=+.-|-.+|     ...++.|++..   ++|||+=-+-..+.+.
T Consensus       191 ae~Lv~eGF~VlpY~~dDpv~akrLed~--Gc~avMPlgsPIGSg~Gi~n~~~i~~i~e~~---~vpvivDAGiG~pS~A  265 (327)
T PRK11840        191 AEVLVKEGFQVMVYCSDDPIAAKRLEDA--GAVAVMPLGAPIGSGLGIQNPYTIRLIVEGA---KVPVLVDAGVGTASDA  265 (327)
T ss_pred             HHHHHHCCCEEEEEECCCHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHH
T ss_conf             9999978988988716986899999875--9838862245234788868999999999736---9978995798987899


Q ss_pred             HHHHHCCCCEEEEC-----CCCHHHHHHHHHHHH
Q ss_conf             99997699889987-----989899999999974
Q gi|254780476|r   92 ERIRKGGCEAYISK-----PISLSIFMETIKKYI  120 (123)
Q Consensus        92 ~~~~~~g~~~~l~K-----Pi~~~~L~~~i~~~l  120 (123)
                      .++++.|+++.|.-     --+|-.+-++++.++
T Consensus       266 ~~aMElG~daVL~NTAiA~a~~Pv~MA~A~~~av  299 (327)
T PRK11840        266 AVAMELGCDGVLMNTAIAEAKNPILMARAMKLAV  299 (327)
T ss_pred             HHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             9998636666663367672699799999999999


No 249
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=52.75  E-value=20  Score=17.39  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=10.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             789953998999999999997898
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGY   27 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~   27 (123)
                      +|.-+|=||...+.++..++..+.
T Consensus       126 ~V~a~DlNp~a~~~l~~N~~lN~v  149 (199)
T pfam02475       126 RVYAVELNPEAVKYLKENIKLNKV  149 (199)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             899982899999999999998099


No 250
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=51.83  E-value=21  Score=17.30  Aligned_cols=54  Identities=22%  Similarity=0.397  Sum_probs=36.0

Q ss_pred             CEEEEECCCHHH---------HHHHHHHHHHCCCEEEEECCHH------HHHHHHHH--CCCCEEEEEEEC
Q ss_conf             778995399899---------9999999997898999988979------99999982--799899995041
Q gi|254780476|r    3 KKVMIVEDNELN---------MKLFRDLIETSGYIALQTRNGM------EALELARQ--HKPDVIIMDIQL   56 (123)
Q Consensus         3 kkiLiVDD~~~~---------~~~l~~~l~~~g~~v~~a~~g~------eal~~l~~--~~~dlillD~~m   56 (123)
                      +=|+|+|+|...         .+-+..-++.+||.|..+.+|.      +|++.++.  .+|-+|++...+
T Consensus       175 nLi~i~D~N~iqidG~t~~~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~~~kPt~Ii~~Tii  245 (333)
T pfam00456       175 NLIAFYDDNRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLIICRTVI  245 (333)
T ss_pred             CEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             78999745754217984535551099998764907999469999999999999998658998169864215


No 251
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=51.56  E-value=21  Score=17.27  Aligned_cols=59  Identities=8%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             CCCEEEEEEECCCC-C--HHHHHHHHHHCCCCCCCCEEEEEECCCHHHH----HHHHHCCCCEEEE
Q ss_conf             99899995041296-9--5999999982857689959999924998999----9999769988998
Q gi|254780476|r   46 KPDVIIMDIQLQEI-S--GLEITKQIKEDSELQEIPVIAVTAFAMKGDE----ERIRKGGCEAYIS  104 (123)
Q Consensus        46 ~~dlillD~~mp~~-d--G~el~~~ir~~~~~~~ipii~~t~~~~~~~~----~~~~~~g~~~~l~  104 (123)
                      .+.+=++-+.||.. .  --|.++.++......++|-|.+|+.-.....    .-+.++|++++|.
T Consensus       197 d~GadvlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~  262 (306)
T COG3684         197 DSGADVLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLA  262 (306)
T ss_pred             CCCCCEEEEECCEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             378756986233002676199999998740477898698846766777589999999738860674


No 252
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=51.40  E-value=22  Score=17.26  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=29.9

Q ss_pred             HHCCCCEEEEEEE--C-CCCCH---H----HHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             8279989999504--1-29695---9----999999828576899599999249
Q gi|254780476|r   43 RQHKPDVIIMDIQ--L-QEISG---L----EITKQIKEDSELQEIPVIAVTAFA   86 (123)
Q Consensus        43 ~~~~~dlillD~~--m-p~~dG---~----el~~~ir~~~~~~~ipii~~t~~~   86 (123)
                      ..+.+|+|++|+-  | +.-.+   .    ++++.+|+...-.++|||+++-..
T Consensus       120 ~~~~~~~vvvDylql~~~~~~~~~~~~~i~~i~~~Lk~lA~e~~v~Vi~~sQln  173 (242)
T cd00984         120 KEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLS  173 (242)
T ss_pred             HHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf             836998999826985467776657999999999999999999799399984678


No 253
>PRK12857 putative aldolase; Reviewed
Probab=50.52  E-value=22  Score=17.18  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEE--------CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHCCCCEE
Q ss_conf             89799999998279989999504--------129695999999982857689959999924998-99999997699889
Q gi|254780476|r   33 RNGMEALELARQHKPDVIIMDIQ--------LQEISGLEITKQIKEDSELQEIPVIAVTAFAMK-GDEERIRKGGCEAY  102 (123)
Q Consensus        33 ~~g~eal~~l~~~~~dlillD~~--------mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~-~~~~~~~~~g~~~~  102 (123)
                      .+.++|.+.+++...|+.-.-+.        -|.. -|+.+++|++.-   ++|+++.-++..+ ++..++.+.|+.-+
T Consensus       155 T~peea~~Fv~~TgvD~LAvaiGn~HG~yk~~p~L-~~~~L~~I~~~~---~vPLVLHGgSGi~~e~i~~ai~~Gi~Ki  229 (284)
T PRK12857        155 TDPEEARRFVEETGVDALAIAIGTAHGPYKGVPKL-DFDRLAKIRELV---NIPLVLHGSSGVPDEAIRKAISLGVRKV  229 (284)
T ss_pred             CCHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCC-CHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHCCEEE
T ss_conf             89999999999879787701205666776898856-999999998616---9998976899999999999998097599


No 254
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.48  E-value=22  Score=17.17  Aligned_cols=42  Identities=33%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             969599999998285768995999992499899999997699889
Q gi|254780476|r   58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        58 ~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      ..-..++++.+|+..   ++|++...........+++++.|..|+
T Consensus       266 ~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~a~~~l~~g~~D~  307 (327)
T cd02803         266 EGYFLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILAEGKADL  307 (327)
T ss_pred             CCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCH
T ss_conf             522389999999976---981999899899999999998899312


No 255
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=50.42  E-value=22  Score=17.17  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             789953998999999999997898999988-9799999998279989999504129695999999982857689959999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTR-NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~-~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .+++||.|+...+.+    ...|+.+.... +-.+.|+.+.-+..+.+++...=+ ..-..++..+|+..  ...+|++.
T Consensus        22 ~v~vId~d~~~~~~~----~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d-~~n~~~~~~~r~~~--~~~~iiar   94 (115)
T pfam02254        22 PVVVIDKDPERVEEL----REEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDD-EANILIVLLARELN--PAKKIIAR   94 (115)
T ss_pred             CEEEEECCHHHHHHH----HHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCH-HHHHHHHHHHHHHC--CCCEEEEE
T ss_conf             999999987998778----866986999956886678761920287999962984-99999999999978--99809999


Q ss_pred             EECCCHHHHHHHHHCCCCEEE
Q ss_conf             924998999999976998899
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      +  ..+.......+.|++..+
T Consensus        95 ~--~~~~~~~~l~~~Gad~vi  113 (115)
T pfam02254        95 A--NDPEHAELLRRLGADEVI  113 (115)
T ss_pred             E--CCHHHHHHHHHCCCCEEE
T ss_conf             8--789999999976989997


No 256
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939    This is a family of largely hypothetical proteins of unknown function.  .
Probab=50.28  E-value=22  Score=17.15  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=25.6

Q ss_pred             HHHHHHCCCCEEEECCCCH----HHHHHHHHHHHHCC
Q ss_conf             9999976998899879898----99999999974039
Q gi|254780476|r   91 EERIRKGGCEAYISKPISL----SIFMETIKKYIGEA  123 (123)
Q Consensus        91 ~~~~~~~g~~~~l~KPi~~----~~L~~~i~~~l~~a  123 (123)
                      ..-+..+|+++|+.-|+.+    ....+.++.+++.|
T Consensus        50 ~aaa~aAG~~Gy~H~Pv~~g~~~pd~ve~fraa~~aA   86 (136)
T TIGR01244        50 KAAAEAAGLTGYLHLPVTAGDLTPDDVETFRAALEAA   86 (136)
T ss_pred             HHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999856888610054217888762689999999822


No 257
>PRK03220 consensus
Probab=50.24  E-value=22  Score=17.15  Aligned_cols=80  Identities=13%  Similarity=0.239  Sum_probs=54.0

Q ss_pred             HHHHHHHHHCCC-CEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE------C
Q ss_conf             999999982799-899995041296-95--9999999828576899599999249989999999769988998------7
Q gi|254780476|r   36 MEALELARQHKP-DVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS------K  105 (123)
Q Consensus        36 ~eal~~l~~~~~-dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~------K  105 (123)
                      .+.++.+.+... .+++.|+.--++ .|  +++++.+++..   ++|+|+--+-...++..++.+.|+++.+.      +
T Consensus       162 ~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~~~---~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~  238 (257)
T PRK03220        162 VEWAARGAELGVGEILLNSMDADGTKAGFDLEMLRAVRAAV---TVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFG  238 (257)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf             99999986269888999988686602378969999999748---999899878999999999997899799874687889


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             9898999999999
Q gi|254780476|r  106 PISLSIFMETIKK  118 (123)
Q Consensus       106 Pi~~~~L~~~i~~  118 (123)
                      -+++.++.+.++.
T Consensus       239 ~~s~~~~k~~l~~  251 (257)
T PRK03220        239 ELTIGQVKAALAA  251 (257)
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9889999999998


No 258
>PRK08760 replicative DNA helicase; Provisional
Probab=50.19  E-value=23  Score=17.15  Aligned_cols=67  Identities=21%  Similarity=0.322  Sum_probs=41.1

Q ss_pred             HHHHHHCCCEEEEEC--CHH----HHHHHHHHCCCCEEEEEEE--C--CCCCH------HHHHHHHHHCCCCCCCCEEEE
Q ss_conf             999997898999988--979----9999998279989999504--1--29695------999999982857689959999
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGM----EALELARQHKPDVIIMDIQ--L--QEISG------LEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~----eal~~l~~~~~dlillD~~--m--p~~dG------~el~~~ir~~~~~~~ipii~~   82 (123)
                      ...+..+.+.+....  +..    .+..+-+.+..++|++|+-  |  |+...      -++.+.+|....--++|||++
T Consensus       306 ~~~l~~~~l~idD~~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~~~~r~~~v~~isr~lK~lAkel~vpVi~L  385 (476)
T PRK08760        306 IKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIAL  385 (476)
T ss_pred             HHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99986088168579999999999999999872799879997076415888874488999999999999999979978996


Q ss_pred             EEC
Q ss_conf             924
Q gi|254780476|r   83 TAF   85 (123)
Q Consensus        83 t~~   85 (123)
                      +=-
T Consensus       386 sQL  388 (476)
T PRK08760        386 SQL  388 (476)
T ss_pred             CCC
T ss_conf             315


No 259
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=50.09  E-value=23  Score=17.14  Aligned_cols=70  Identities=14%  Similarity=0.099  Sum_probs=29.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----E--EEC-----CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             999950412969599999998285768995999----9--924-----99899999997699889987989899999999
Q gi|254780476|r   49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIA----V--TAF-----AMKGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        49 lillD~~mp~~dG~el~~~ir~~~~~~~ipii~----~--t~~-----~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      +++=|-.|.+-.-+|.+..... ..+.++-+|+    +  ++.     .......+....|.+.+-..--+.+.+..+++
T Consensus       132 ~~iGDGel~EG~~wEAl~~A~~-~~L~nLi~ivD~N~~~~~g~~~~~~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~  210 (255)
T cd02012         132 VLLGDGELQEGSVWEAASFAGH-YKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALE  210 (255)
T ss_pred             EEECCCCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9942511033128999999855-587756999868982625603025476889999996698111017999999999999


Q ss_pred             HH
Q ss_conf             97
Q gi|254780476|r  118 KY  119 (123)
Q Consensus       118 ~~  119 (123)
                      ++
T Consensus       211 ~a  212 (255)
T cd02012         211 EA  212 (255)
T ss_pred             HH
T ss_conf             99


No 260
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=49.81  E-value=23  Score=17.11  Aligned_cols=52  Identities=19%  Similarity=0.175  Sum_probs=28.7

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHH
Q ss_conf             999999982857689959999924998999999976998899-----------879898999999999
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKK  118 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~  118 (123)
                      .++++.+|+.    .+++-++|+.............|..+|+           .|| +|+.++.++++
T Consensus        99 ~e~L~~L~~~----g~~l~I~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~v~~~KP-~P~~~~~a~~~  161 (228)
T PRK13222         99 KETLAALKAA----GYPLAVVTNKPEPFVAPLLEALGIADYFSVVIGGDSLPNKKP-DPAPLLLACEK  161 (228)
T ss_pred             HHHHHHHHHC----CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHHH
T ss_conf             9999999987----996477548749999999886276533234663222477787-86999999998


No 261
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=49.80  E-value=21  Score=17.30  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=36.5

Q ss_pred             HHHHHHCCCEEEEEC--CHHHH---HHHH-HHC-CCCEEEEEEE--CCCCCH-------HHHHHHHHHCCCCCCCCEEEE
Q ss_conf             999997898999988--97999---9999-827-9989999504--129695-------999999982857689959999
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGMEA---LELA-RQH-KPDVIIMDIQ--LQEISG-------LEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~ea---l~~l-~~~-~~dlillD~~--mp~~dG-------~el~~~ir~~~~~~~ipii~~   82 (123)
                      ...+..+.+.+....  +..+-   .+.+ +++ .+|+|++|+-  |..-++       -++.+.+|....--++|||++
T Consensus       271 ~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~l  350 (421)
T TIGR03600       271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL  350 (421)
T ss_pred             HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99861687899669988767899999999986289869997578653788888889999999999999999979978997


Q ss_pred             EECC
Q ss_conf             9249
Q gi|254780476|r   83 TAFA   86 (123)
Q Consensus        83 t~~~   86 (123)
                      |=-+
T Consensus       351 sQLn  354 (421)
T TIGR03600       351 AQLN  354 (421)
T ss_pred             CCCC
T ss_conf             0578


No 262
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=49.61  E-value=23  Score=17.09  Aligned_cols=94  Identities=15%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             EEEEECCCH-------HHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             789953998-------9999999999978--9899998897999999982799899995041296959999999828576
Q gi|254780476|r    4 KVMIVEDNE-------LNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL   74 (123)
Q Consensus         4 kiLiVDD~~-------~~~~~l~~~l~~~--g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~   74 (123)
                      .|||=|+.-       ...+.++..-+..  ..-..++.|-+++.+.+... +|.|++|=.-|+. =-+.++.+++.   
T Consensus       159 ~vLIKdNH~~~~~~~~~~~~ai~~~r~~~p~~kIeVEv~tl~~~~ea~~~g-aD~IlLDnmsp~~-l~~av~~~~~~---  233 (284)
T PRK06096        159 TILLFANHRHFLHDNQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQ-PDVLQLDKFSPQQ-ATEIAQIAPSL---  233 (284)
T ss_pred             EEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC-CCEEEECCCCHHH-HHHHHHHHHHH---
T ss_conf             588700249887253579999999997589998899809999999998579-9999968989999-99999998721---


Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             8995999992499899999997699889
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      ..-.++-.||.-..+......+.|++-+
T Consensus       234 ~~~~~lEaSGGI~~~ni~~yA~tGVD~i  261 (284)
T PRK06096        234 APHCTLALTGGINLTTLKNYLDCGIRLF  261 (284)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             7977999989999999999998099999


No 263
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=49.50  E-value=19  Score=17.54  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             8778995399899999999999789899--9988979999999827998999950412969599999998285
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIA--LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS   72 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v--~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~   72 (123)
                      ..+|--||-++...+.-++.|...|+.-  ....+|..++.  ...+||.|++.-..|..- -.+..+++...
T Consensus       101 ~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~--~~apfD~Iiv~aa~~~iP-~~l~~qL~~gG  170 (214)
T PRK13942        101 SGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYE--ENAPYDRIYVTAAGPDIP-KPLLEQLKDGG  170 (214)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCCCCC-HHHHHHCCCCC
T ss_conf             78579997179999999999986376875898567566784--459812799985176578-99999628895


No 264
>TIGR01334 modD modD protein; InterPro: IPR006242   The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=49.49  E-value=23  Score=17.08  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=65.9

Q ss_pred             ECCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             539989999999999978--989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r    8 VEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus         8 VDD~~~~~~~l~~~l~~~--g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      ..|+......+.++=+..  .=-+.++++-++|+.+++.. ||++=||=--|.    .+-+.....+...+.|-+.++|.
T Consensus       169 l~D~~Dw~gai~rLkq~APE~KItvEadt~~qa~~~l~a~-PDilQLdKFtpq----Q~~~~~~~l~~~~~~~tLa~aGG  243 (277)
T TIGR01334       169 LSDNEDWSGAITRLKQQAPEKKITVEADTLKQALAVLRAD-PDILQLDKFTPQ----QVKELLELLKLLDKIITLAVAGG  243 (277)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC-CCEEECCCCCHH----HHHHHHHHHHHHCCCCCEEEECC
T ss_conf             1780027899988774378772687405989999997448-976632368888----99999999997376765340078


Q ss_pred             CCHHHHHHHHHCCCCEEEE
Q ss_conf             9989999999769988998
Q gi|254780476|r   86 AMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        86 ~~~~~~~~~~~~g~~~~l~  104 (123)
                      -.........+.|++=|++
T Consensus       244 iN~~n~a~Y~~~Gi~lfiT  262 (277)
T TIGR01334       244 INKENVADYLELGIDLFIT  262 (277)
T ss_pred             CCHHHHHHHHHCCCEEEEE
T ss_conf             7877899998625204642


No 265
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=49.22  E-value=23  Score=17.06  Aligned_cols=57  Identities=18%  Similarity=0.310  Sum_probs=23.3

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC------EEEEC-CCCHHHHHHHHHHHH
Q ss_conf             99999982857689959999924998999999976998------89987-989899999999974
Q gi|254780476|r   63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE------AYISK-PISLSIFMETIKKYI  120 (123)
Q Consensus        63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~------~~l~K-Pi~~~~L~~~i~~~l  120 (123)
                      ++++++++.... ++|||.+.+-....|..+.+.+|++      +++.+ |--.+++.+-+.+++
T Consensus       229 ~~v~~l~~~~~~-~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l  292 (310)
T COG0167         229 RVVAELYKRLGG-DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWL  292 (310)
T ss_pred             HHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf             999999984289-9748984686969999999982975640411210208509999999999999


No 266
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=49.13  E-value=23  Score=17.05  Aligned_cols=95  Identities=13%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHH-------HHHHHCCC--CCCC-
Q ss_conf             99899999999999789899998897999999982--799899995041296959999-------99982857--6899-
Q gi|254780476|r   10 DNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEIT-------KQIKEDSE--LQEI-   77 (123)
Q Consensus        10 D~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~el~-------~~ir~~~~--~~~i-   77 (123)
                      .+..+..-+.++.+..|+..-.+-|...-++.+..  +..|+||+=--=||-.|-.+.       |++|+.-.  .... 
T Consensus        90 Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TPl~~~~~~L~~~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~  169 (216)
T TIGR01163        90 EATEHIHRLLQLIKELGAKAGIVLNPATPLEALEYVLEDVDLVLLMSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLS  169 (216)
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77626799999999718970688679999878998987629899887607998841105789999999999986027995


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             599999249989999999769988998
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      ..|-+=|.-......++.++|+|-++.
T Consensus       170 ~~ieVDGGv~~~ni~~~~~AGAD~~Va  196 (216)
T TIGR01163       170 ILIEVDGGVNEDNIAEVAEAGADILVA  196 (216)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             589971798976799999758989998


No 267
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815    This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=48.82  E-value=17  Score=17.78  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCE
Q ss_conf             9999999828576899599999249989999999769988
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA  101 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~  101 (123)
                      -+.++.+++    ..+|||.+|++...+.+.--..+|..+
T Consensus        22 ~~~l~~L~e----~~iPvI~CtSKTAAEv~~lr~~L~L~~   57 (224)
T TIGR02463        22 APWLTRLQE----AGIPVILCTSKTAAEVEALRKALGLTG   57 (224)
T ss_pred             HHHHHHHHH----CCCCEEECCCCCHHHHHHHHHHHCCCC
T ss_conf             999999997----589764258730789999999848898


No 268
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=48.67  E-value=24  Score=17.01  Aligned_cols=88  Identities=18%  Similarity=0.288  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----HHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             999999999978989999-8897999999982799899995041296959----99999982857689959999924998
Q gi|254780476|r   14 NMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGL----EITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~----el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      ..+-+...-...|+++.+ +.|.+|.-..++ -...+|  .++=-+...|    +...++...-. ++.-+|.-||-...
T Consensus       144 ~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~-~ga~iI--GINnRdL~tf~vdl~~t~~la~~~p-~~~~~IsESGI~~~  219 (254)
T COG0134         144 QLEELVDRAHELGMEVLVEVHNEEELERALK-LGAKII--GINNRDLTTLEVDLETTEKLAPLIP-KDVILISESGISTP  219 (254)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCCEE--EEECCCCCHHEECHHHHHHHHHHCC-CCCEEEECCCCCCH
T ss_conf             9999999999769923899789999999996-799889--9837884021006889999884487-77589961798999


Q ss_pred             HHHHHHHHCCCCEEEEC
Q ss_conf             99999997699889987
Q gi|254780476|r   89 GDEERIRKGGCEAYISK  105 (123)
Q Consensus        89 ~~~~~~~~~g~~~~l~K  105 (123)
                      .+.....+.|+++||.=
T Consensus       220 ~dv~~l~~~ga~a~LVG  236 (254)
T COG0134         220 EDVRRLAKAGADAFLVG  236 (254)
T ss_pred             HHHHHHHHCCCCEEEEC
T ss_conf             99999997489989963


No 269
>PRK08082 consensus
Probab=48.63  E-value=24  Score=17.00  Aligned_cols=67  Identities=24%  Similarity=0.342  Sum_probs=38.8

Q ss_pred             HHHHHCCCEEEEECC--HHH----HHHHHHHCCCCEEEEEEE--C--CCCCH-------HHHHHHHHHCCCCCCCCEEEE
Q ss_conf             999978989999889--799----999998279989999504--1--29695-------999999982857689959999
Q gi|254780476|r   20 DLIETSGYIALQTRN--GME----ALELARQHKPDVIIMDIQ--L--QEISG-------LEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        20 ~~l~~~g~~v~~a~~--g~e----al~~l~~~~~dlillD~~--m--p~~dG-------~el~~~ir~~~~~~~ipii~~   82 (123)
                      ..+..+++.+....+  -.+    +..+-+.+..++|++|+-  |  ++..+       -++.+.+|....--++|||++
T Consensus       281 ~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~livIDYlqLi~~~~~~~~~r~~ev~~isr~LK~lAkel~ipvi~l  360 (453)
T PRK08082        281 GSLSNAGIYIDDTPGIRVNEIRAKCRRLKQEQGLGMILIDYLQLIQGSGRSGENRQQEVSEISRTLKALARELEVPVIAL  360 (453)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             98506973897899998999999999999866998899950773377898887899999999999999999969979996


Q ss_pred             EECC
Q ss_conf             9249
Q gi|254780476|r   83 TAFA   86 (123)
Q Consensus        83 t~~~   86 (123)
                      |=-+
T Consensus       361 sQLn  364 (453)
T PRK08082        361 SQLS  364 (453)
T ss_pred             CCCC
T ss_conf             4478


No 270
>PRK11059 regulatory protein CsrD; Provisional
Probab=48.42  E-value=24  Score=16.98  Aligned_cols=98  Identities=10%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHHHHHHCCCEE--EEECCHHHHHHHHHHCCCCEEEEEEECC-CC----CHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99899999999999789899--9988979999999827998999950412-96----95999999982857689959999
Q gi|254780476|r   10 DNELNMKLFRDLIETSGYIA--LQTRNGMEALELARQHKPDVIIMDIQLQ-EI----SGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        10 D~~~~~~~l~~~l~~~g~~v--~~a~~g~eal~~l~~~~~dlillD~~mp-~~----dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      +|......+.+.|...|+.+  ..+..|-..+..+++-++|.+=+|-.+= ++    +-..+++.|-.......+.||+ 
T Consensus       532 ~~~~~~~~~l~~L~~lG~~~aiDdFG~g~sSl~YLk~lpvd~LKID~SfVr~I~~~~enq~~V~sIi~~a~~l~~~VIA-  610 (642)
T PRK11059        532 QHIDRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHQRTENQLFVRSLVGACAGTETQVFA-  610 (642)
T ss_pred             HCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-
T ss_conf             4899999999999976987999899997666899963999999988888637126931079999999999867997999-


Q ss_pred             EECCCHHHHHHHHHCCCCE----EEECCCC
Q ss_conf             9249989999999769988----9987989
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEA----YISKPIS  108 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~----~l~KPi~  108 (123)
                      .+-...+..+...+.|+++    |+.||..
T Consensus       611 EGVEt~~q~~~L~~lGvd~~QGy~f~~P~P  640 (642)
T PRK11059        611 EGVESREEWQTLQILGVSGGQGDFFASPQP  640 (642)
T ss_pred             EECCCHHHHHHHHHCCCCEEECCEECCCCC
T ss_conf             623869999999980998322473178889


No 271
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=48.25  E-value=24  Score=16.97  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99999999978989------999889799---999998279989999504129695---999999982857689959999
Q gi|254780476|r   15 MKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        15 ~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~~   82 (123)
                      ++.+.++++..|..      +..-+-|+.   |+..+--..|+++++|=-+...|-   .++...|++......+|+|++
T Consensus       106 ~~~~~~~~~~l~l~~l~~r~p~~LSGGq~QRvaiARAL~~~P~lLllDEP~s~LD~~~~~~i~~~l~~l~~~~~~til~V  185 (352)
T PRK11144        106 PAQFDKIVSLLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAQEINIPILYV  185 (352)
T ss_pred             HHHHHHHHHHCCCHHHHHCCHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             99999999775995676278646592452349999987249999998784002797799999999999999739889999


Q ss_pred             EEC
Q ss_conf             924
Q gi|254780476|r   83 TAF   85 (123)
Q Consensus        83 t~~   85 (123)
                      |-.
T Consensus       186 THd  188 (352)
T PRK11144        186 SHS  188 (352)
T ss_pred             ECC
T ss_conf             399


No 272
>PRK13117 consensus
Probab=47.74  E-value=25  Score=16.92  Aligned_cols=94  Identities=13%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEE--EE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHH---------HHHHHHHHCCC
Q ss_conf             9953998999999999997898999--98-897999999982799899995041296959---------99999982857
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGYIAL--QT-RNGMEALELARQHKPDVIIMDIQLQEISGL---------EITKQIKEDSE   73 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~~v~--~a-~~g~eal~~l~~~~~dlillD~~mp~~dG~---------el~~~ir~~~~   73 (123)
                      +++|=-....+-+...+...|....  .+ .+..+=++.+.+....+|-+ ...++.+|-         +++++||+   
T Consensus       127 IipDLP~eE~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~GFiY~-vs~~GvTG~~~~~~~~~~~~i~~ik~---  202 (268)
T PRK13117        127 LIADVPVEESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGRGYTYL-LSRAGVTGAENKAAAPLNHLVEKLKE---  202 (268)
T ss_pred             EECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE-EECCCCCCCCCCCCHHHHHHHHHHHH---
T ss_conf             85799978858999999867983799847999999999999747985999-83677788986662779999999996---


Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             689959999924998999999976998899
Q gi|254780476|r   74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        74 ~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      ..++|+.+=-|-..+++..+..+.++++.+
T Consensus       203 ~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvI  232 (268)
T PRK13117        203 YNAPPPLQGFGISEPEQVKAAIKAGAAGAI  232 (268)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             479986998378999999999863899899


No 273
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.62  E-value=25  Score=16.91  Aligned_cols=115  Identities=17%  Similarity=0.253  Sum_probs=67.8

Q ss_pred             CEEEE--ECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             77899--53998---99999999999789899998-------89799999998279989999504129695999999982
Q gi|254780476|r    3 KKVMI--VEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         3 kkiLi--VDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      ||+-+  .+|+.   ...+.+++.++..|.++...       .+-..-+..+++..||+|++-..  .-++..++++.|+
T Consensus       137 k~vav~~~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~~--~~~~~~~~~q~~~  214 (344)
T cd06348         137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISAL--AADGGNLVRQLRE  214 (344)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHH
T ss_conf             88999994897589999999999998769858998716898601789999987519999999457--4259999999997


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHH
Q ss_conf             857689959999924998999999976998899879898-------999999999740
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL-------SIFMETIKKYIG  121 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~-------~~L~~~i~~~l~  121 (123)
                      ..  -+.|++.-++..........-+..-.-+..-|+.+       ..|.+..++..|
T Consensus       215 ~G--~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~F~~~y~~~~g  270 (344)
T cd06348         215 LG--YNGLIVGGNGFNTPNVFPVCQAACDGVLVAQAYSPENDTPVNRDFVEAYKKKYG  270 (344)
T ss_pred             CC--CCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             69--997099866778789998678985987999716876787789999999999868


No 274
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=47.33  E-value=25  Score=16.88  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             9999889799999998279989999504129695999999982857689959999924998999999976998899
Q gi|254780476|r   28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        28 ~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      -..++.|-+|+.+.+.. .+|.|++|=.-|+ +=-+..+.+++.   ..-..+-.||.-......+..+.|++.+.
T Consensus       186 IeVEv~~~~q~~~a~~~-g~d~I~LDn~s~~-~ik~~v~~~~~~---~~~v~ieaSGgI~~~ni~~yA~tGvD~Is  256 (272)
T cd01573         186 IVVEVDSLEEALAAAEA-GADILQLDKFSPE-ELAELVPKLRSL---APPVLLAAAGGINIENAAAYAAAGADILV  256 (272)
T ss_pred             EEEEECCHHHHHHHHHC-CCCEEEECCCCHH-HHHHHHHHHHCC---CCCEEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             89983999999999846-9999997799999-999999997444---88769999899999999999973999998


No 275
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.29  E-value=25  Score=16.88  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             CCCCEEEEEEECCC-CC---HH----------HHHHHHHHCCCCCCCCEEEEEECCCHHHHH----HHHHCCC--CEEEE
Q ss_conf             79989999504129-69---59----------999999828576899599999249989999----9997699--88998
Q gi|254780476|r   45 HKPDVIIMDIQLQE-IS---GL----------EITKQIKEDSELQEIPVIAVTAFAMKGDEE----RIRKGGC--EAYIS  104 (123)
Q Consensus        45 ~~~dlillD~~mp~-~d---G~----------el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~~~~~g~--~~~l~  104 (123)
                      ..|.+=++-+.+|. ++   |+          +.++..++.....++|-|++|+.-....-.    -+.++|+  ++||-
T Consensus       198 ~~ygvDvlKvE~Pvn~~~veg~~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGa~fsG~L~  277 (340)
T PRK12858        198 PRYGVDVLKVEVPVDMKFVEGRDGFAAAYTQEEAFKLFREQSDATPLPFIFLSAGVTPELFLRELEFAKQAGADFNGVLC  277 (340)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             66698679962666612022456753213599999999999735499979981899989999999999985997235534


No 276
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=47.25  E-value=25  Score=16.88  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHCCCCEEEE-----EEECCCCCHH-HHHHHHHHCCCCCCCCEEEEEECCCHHHHH
Q ss_conf             799999998279989999-----5041296959-999999828576899599999249989999
Q gi|254780476|r   35 GMEALELARQHKPDVIIM-----DIQLQEISGL-EITKQIKEDSELQEIPVIAVTAFAMKGDEE   92 (123)
Q Consensus        35 g~eal~~l~~~~~dlill-----D~~mp~~dG~-el~~~ir~~~~~~~ipii~~t~~~~~~~~~   92 (123)
                      -.++++.+.++.+|+|++     |-.=|...-. .+.+.+|.... ..+||+++.|........
T Consensus        29 f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~-~~Ipv~~I~GNHD~~~~~   91 (390)
T COG0420          29 FDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKD-AGIPVVVIAGNHDSPSRL   91 (390)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCC
T ss_conf             999999999706999998155578899998999999999998754-698289972789860126


No 277
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=47.20  E-value=25  Score=16.87  Aligned_cols=61  Identities=15%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEE--EECCCCCHHHHHH
Q ss_conf             77899539989999999999978989-99-98897999999982799899995--0412969599999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYI-AL-QTRNGMEALELARQHKPDVIIMD--IQLQEISGLEITK   66 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~-v~-~a~~g~eal~~l~~~~~dlillD--~~mp~~dG~el~~   66 (123)
                      .+|..+|-|+...+..++.++..+.+ +. ..++..+   -+....||+|+..  +.-....++++.+
T Consensus        56 ~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~---~~~~~~fD~IvsNPP~h~g~~~~~~~~~  120 (170)
T pfam05175        56 LEVTMVDINARALESARANLAANGLENGEVFWSDLYS---AVEPGKFDLIISNPPFHAGKATDYDVAQ  120 (170)
T ss_pred             CEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf             6798515449999999999998099848999744666---5778866089989772114203289999


No 278
>PRK13224 consensus
Probab=46.89  E-value=25  Score=16.84  Aligned_cols=106  Identities=8%  Similarity=0.012  Sum_probs=56.6

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEECC--------HHHHHHHHHH-----------------CCCCEEEEEEECCCCCH
Q ss_conf             9539989999999999978989999889--------7999999982-----------------79989999504129695
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQTRN--------GMEALELARQ-----------------HKPDVIIMDIQLQEISG   61 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~a~~--------g~eal~~l~~-----------------~~~dlillD~~mp~~dG   61 (123)
                      +||..+.....+.+.+...|+.......        ....++.+..                 +.+.-.... ...-..|
T Consensus        12 LvDS~~~~~~a~~~~l~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~pG   90 (216)
T PRK13224         12 LVDSAPDIHAAVNAALAEEGAAPLTLAEVTGFVGNGVPVLVQRVIAARGLAPDAHRELQARFMAHYEADATA-LTRVYPG   90 (216)
T ss_pred             HHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCC
T ss_conf             675999999999999998799999999999996588899999998754999689999999999999974023-4872837


Q ss_pred             -HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHH
Q ss_conf             -999999982857689959999924998999999976998899-----------879898999999999
Q gi|254780476|r   62 -LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKK  118 (123)
Q Consensus        62 -~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~  118 (123)
                       .++++.+|+.    .+|+-++|++............|..+|+           .|| +|+-++.++++
T Consensus        91 ~~e~L~~L~~~----g~~laivTn~~~~~~~~~L~~~gl~~~Fd~iv~~d~v~~~KP-~Pe~~l~a~~~  154 (216)
T PRK13224         91 VEAALRHLKAE----GWRLGLCTNKPVGPTRAILAHFGLAELFDVVIGGDSLPQRKP-DPAPLRAAFAA  154 (216)
T ss_pred             HHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHCCCHHHCCEEECCCCCCCCCC-CHHHHHHHHHH
T ss_conf             99999999977----996687608934778889987394432474654466899999-99999999973


No 279
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=46.80  E-value=26  Score=16.83  Aligned_cols=76  Identities=20%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             EEEEECCCH-----HHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             789953998-----9999999999978989999-8897999999982799899995041296959999999828576899
Q gi|254780476|r    4 KVMIVEDNE-----LNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         4 kiLiVDD~~-----~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
                      ||++|=++-     .....+++.+...++.... ..+-.+.   .....+|+|+....++              ....+.
T Consensus         1 ~ilvvC~~G~~tS~ll~~~l~~~~~~~~~~~~v~~~~~~~~---~~~~~~DlIist~~l~--------------~~~~~~   63 (84)
T cd00133           1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPLA--------------ARFLGK   63 (84)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHC---CCCCCCCEEEEEECCC--------------CCCCCC
T ss_conf             99999999889999999999999886882899986123314---1435988899900247--------------544799


Q ss_pred             CEEEEEECCCHHHHHHHHH
Q ss_conf             5999992499899999997
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRK   96 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~   96 (123)
                      |++.++......+..+..+
T Consensus        64 p~i~v~~~~~~~d~~~i~~   82 (84)
T cd00133          64 PVIVVSPLLNEKDGEKILE   82 (84)
T ss_pred             CEEEEECCCCHHHHHHHHH
T ss_conf             8899977999899999995


No 280
>PRK08694 consensus
Probab=46.74  E-value=26  Score=16.83  Aligned_cols=68  Identities=25%  Similarity=0.325  Sum_probs=36.9

Q ss_pred             HHHHHHCCCEEEEEC--CHHH----HHHHHHHC--CCCEEEEEEE--CC--CCCH------HHHHHHHHHCCCCCCCCEE
Q ss_conf             999997898999988--9799----99999827--9989999504--12--9695------9999999828576899599
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGME----ALELARQH--KPDVIIMDIQ--LQ--EISG------LEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~e----al~~l~~~--~~dlillD~~--mp--~~dG------~el~~~ir~~~~~~~ipii   80 (123)
                      ..-+..+.+.+....  +-.+    +.++.+++  ++++|++|+-  |+  +..+      -++.+.+|....--++|||
T Consensus       295 ~~~l~~~pl~idd~~~~t~~~i~a~~r~~~~~~~~kl~~vvIDYLqLi~~~~~~~~r~~~i~~isr~LK~lAkel~ipvi  374 (468)
T PRK08694        295 VVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPII  374 (468)
T ss_pred             HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             99986299689769999887999999999998389873899736754168887655999999999999999999799899


Q ss_pred             EEEECC
Q ss_conf             999249
Q gi|254780476|r   81 AVTAFA   86 (123)
Q Consensus        81 ~~t~~~   86 (123)
                      ++|=-+
T Consensus       375 ~LsQLn  380 (468)
T PRK08694        375 ALSQLS  380 (468)
T ss_pred             EECCCC
T ss_conf             963268


No 281
>PRK06953 short chain dehydrogenase; Provisional
Probab=46.68  E-value=26  Score=16.82  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHCCCCCCCCEE
Q ss_conf             8778995399899999999999789899998897999999982799899995041296959-999999828576899599
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL-EITKQIKEDSELQEIPVI   80 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~-el~~~ir~~~~~~~ipii   80 (123)
                      ||.+||.=-+.=.=..+.+.|...|+.|..+..-.++++.++....+.+-+|+.=+.  .+ .+..++.    ...+.++
T Consensus         1 MK~~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~--~v~~~~~~~~----~~~ldil   74 (222)
T PRK06953          1 MKTVLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAALRALGAEALALDVADPE--SIAGLGWKLD----GEALDAA   74 (222)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCHH--HHHHHHHHHC----CCCCCEE
T ss_conf             999999475729999999999988899999968888899988421517774058999--9999998623----6776789


Q ss_pred             EEEE
Q ss_conf             9992
Q gi|254780476|r   81 AVTA   84 (123)
Q Consensus        81 ~~t~   84 (123)
                      +.-+
T Consensus        75 i~nA   78 (222)
T PRK06953         75 VYVA   78 (222)
T ss_pred             EEEC
T ss_conf             9816


No 282
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=46.66  E-value=26  Score=16.82  Aligned_cols=106  Identities=15%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH------HHCCCCEEEE------EEECCC----------CCH
Q ss_conf             789953998999999999997898999988979999999------8279989999------504129----------695
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA------RQHKPDVIIM------DIQLQE----------ISG   61 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l------~~~~~dlill------D~~mp~----------~dG   61 (123)
                      ||||.-=-.-..+=|.++|..+|..|.=-.|.-++++..      +...|||++=      .+.||+          +-|
T Consensus       449 RvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEG  528 (667)
T TIGR00631       449 RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG  528 (667)
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCC
T ss_conf             48998201677889999970588379871455789999999998447884088600020024651148899763278889


Q ss_pred             H-----HHHHHHHHCCCCCCCCEEEEEECCCHHHHH--------HHHH---CCCCEEEECCCCH
Q ss_conf             9-----999999828576899599999249989999--------9997---6998899879898
Q gi|254780476|r   62 L-----EITKQIKEDSELQEIPVIAVTAFAMKGDEE--------RIRK---GGCEAYISKPISL  109 (123)
Q Consensus        62 ~-----el~~~ir~~~~~~~ipii~~t~~~~~~~~~--------~~~~---~g~~~~l~KPi~~  109 (123)
                      |     .|.|.|-...+..+=.|||.-..-+.....        +..+   .-.+++..||++.
T Consensus       529 FLRSerSLIQTIGRAARN~~G~VilYAD~iT~sM~~AI~ET~RRR~~Q~~YNe~HgItP~ti~K  592 (667)
T TIGR00631       529 FLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIEETERRRKIQIAYNEEHGITPQTIRK  592 (667)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             9866302788988875257965999728700789999998788899999999753897885405


No 283
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=46.63  E-value=26  Score=16.82  Aligned_cols=79  Identities=18%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             CCEEEEECCCH----HHHHHHHHHHHHCCCEEEEE---C----CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87789953998----99999999999789899998---8----9799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQT---R----NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~a---~----~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .||+-++.+|-    ...+.++..++..|.++...   .    +-..-+..+++..||+|++-  ..+-++..++++.|+
T Consensus       134 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~kik~a~pD~v~~~--~~~~~~~~~~kq~~~  211 (359)
T TIGR03407       134 AKRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNT--LNGDSNVAFFKQLKN  211 (359)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHH
T ss_conf             987999945873058999999999997599737788257987558999999997699999993--746205799999998


Q ss_pred             CCCC-CCCCEEEE
Q ss_conf             8576-89959999
Q gi|254780476|r   71 DSEL-QEIPVIAV   82 (123)
Q Consensus        71 ~~~~-~~ipii~~   82 (123)
                      ..-. +.+|+...
T Consensus       212 ~G~~~~~~~~~~~  224 (359)
T TIGR03407       212 AGITAKDVPVVSF  224 (359)
T ss_pred             HCCCCCCCEEEEE
T ss_conf             2899767758985


No 284
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=46.45  E-value=25  Score=16.90  Aligned_cols=81  Identities=17%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CC-CCCH---HHHHHHHHHCCCCCC
Q ss_conf             877899539989999999999978989999889799999998279989999504-12-9695---999999982857689
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ-LQ-EISG---LEITKQIKEDSELQE   76 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~-mp-~~dG---~el~~~ir~~~~~~~   76 (123)
                      +++|||+|-.......+.+.+...|+...+.-.-....+.++...||.+++--. |. ..++   -.....|+... ...
T Consensus         1 ~~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~-~p~   79 (198)
T COG0518           1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAG-VPG   79 (198)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHC-CCC
T ss_conf             9579999579707679999998739826999857888011566688889985898877644333055789999718-888


Q ss_pred             CCEEEEE
Q ss_conf             9599999
Q gi|254780476|r   77 IPVIAVT   83 (123)
Q Consensus        77 ipii~~t   83 (123)
                      .||+.+-
T Consensus        80 ~pvLGIC   86 (198)
T COG0518          80 KPVLGIC   86 (198)
T ss_pred             CCEEEEC
T ss_conf             8789987


No 285
>cd01144 BtuF Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.28  E-value=26  Score=16.79  Aligned_cols=73  Identities=21%  Similarity=0.308  Sum_probs=36.1

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             99998279989999504129695999999982857689959999924998999999976998899879898999999999
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      ++.+..-+||+|+....   .+.-+...++++.    .+|++++......+..+.....|-  .+.|+=..+++.+.+++
T Consensus        50 ~E~I~~L~PDLVi~~~~---~~~~~~~~~l~~~----gi~v~~~~~~~~~~~~~~i~~lg~--i~g~~~~A~~~i~~~~~  120 (245)
T cd01144          50 LERVLALKPDLVIAWDD---CNVCAVVDQLRAA----GIPVLVSEPQTLDDILADIRRLGT--LAGRPARAEELAEALRR  120 (245)
T ss_pred             HHHHHCCCCCEEEEECC---CCHHHHHHHHHCC----CCEEEEECCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_conf             99995259964774268---7768899987604----976998489999999999999998--74974689999999999


Q ss_pred             HH
Q ss_conf             74
Q gi|254780476|r  119 YI  120 (123)
Q Consensus       119 ~l  120 (123)
                      .+
T Consensus       121 ~l  122 (245)
T cd01144         121 RL  122 (245)
T ss_pred             HH
T ss_conf             99


No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=46.12  E-value=26  Score=16.77  Aligned_cols=20  Identities=5%  Similarity=0.202  Sum_probs=10.1

Q ss_pred             CCCCEEEECCCCHHHHHHHHHH
Q ss_conf             6998899879898999999999
Q gi|254780476|r   97 GGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        97 ~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      +|+.-++..  ++++|...+.+
T Consensus       250 l~vp~~vv~--~~~~l~~~l~~  269 (282)
T TIGR03499       250 LGVPVKVAR--DPKELAKALER  269 (282)
T ss_pred             HCCEEEEEC--CHHHHHHHHHH
T ss_conf             597489939--99999999986


No 287
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=46.12  E-value=26  Score=16.77  Aligned_cols=53  Identities=17%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |.-+++.+-     ..+|||. |....   ..+..+.|.++|+.+|-+++.|.++|.+++.+
T Consensus       277 g~~~lEAma-----~G~PvIa-s~~gg---~~e~i~~g~~G~lv~~~d~~~la~ai~~ll~d  329 (359)
T cd03823         277 PLVIREALA-----AGVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLIDD  329 (359)
T ss_pred             CHHHHHHHH-----CCCCEEE-CCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             479999998-----2998998-88998---17560379867998999999999999999849


No 288
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds.  Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=46.04  E-value=26  Score=16.77  Aligned_cols=79  Identities=10%  Similarity=0.046  Sum_probs=50.6

Q ss_pred             CEEEEECCCH----HHHHHHHHHHHHCCC--EEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             7789953998----999999999997898--99998-------8979999999827998999950412969599999998
Q gi|254780476|r    3 KKVMIVEDNE----LNMKLFRDLIETSGY--IALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK   69 (123)
Q Consensus         3 kkiLiVDD~~----~~~~~l~~~l~~~g~--~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir   69 (123)
                      |||.++.+|.    ...+.++..++..|.  ++...       .+-..-+..+++..||+|++-.  -..+...++++.+
T Consensus       139 k~vaii~~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~~~~pd~v~~~~--~~~~~~~~~~q~~  216 (346)
T cd06330         139 KTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSL--WGGDLVTFVRQAN  216 (346)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHH
T ss_conf             08999938956779999999999986178965888882589986469999999967999999906--6457999999999


Q ss_pred             HCCCCCCCCEEEEE
Q ss_conf             28576899599999
Q gi|254780476|r   70 EDSELQEIPVIAVT   83 (123)
Q Consensus        70 ~~~~~~~ipii~~t   83 (123)
                      +..-....+++...
T Consensus       217 ~~G~~~~~~~~~~~  230 (346)
T cd06330         217 ARGLFDGTTVVLTL  230 (346)
T ss_pred             HCCCCCCCEEEEEC
T ss_conf             74987797499965


No 289
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391   These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=45.76  E-value=27  Score=16.74  Aligned_cols=80  Identities=24%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH--CCCCEEEEEEE------CCC--CCHH-HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             7999999982--79989999504------129--6959-99999982857689959999924998999999976998899
Q gi|254780476|r   35 GMEALELARQ--HKPDVIIMDIQ------LQE--ISGL-EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        35 g~eal~~l~~--~~~dlillD~~------mp~--~dG~-el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      -.++++...+  -.|=+|++|-.      |.+  ..|+ |=..++|+..    +.-||+||-+--....=+.|+|+|+|+
T Consensus       414 lD~av~qVa~~GgTPLvVc~dn~iyGVIyLKDiVK~Gi~ERF~qLR~~G----ikTiM~TGDNrlTAa~IA~EAGVDdFi  489 (675)
T TIGR01497       414 LDEAVDQVAKQGGTPLVVCVDNKIYGVIYLKDIVKSGIKERFEQLRKMG----IKTIMLTGDNRLTAAVIAKEAGVDDFI  489 (675)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCC----CEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf             6788999873289847999757789889873013786045788872258----668997289757899999762888520


Q ss_pred             ECCCCHHHHHHHHHHH
Q ss_conf             8798989999999997
Q gi|254780476|r  104 SKPISLSIFMETIKKY  119 (123)
Q Consensus       104 ~KPi~~~~L~~~i~~~  119 (123)
                      .- .+||.=++.|+|.
T Consensus       490 AE-a~PEdKi~~I~~e  504 (675)
T TIGR01497       490 AE-ATPEDKIEVIKKE  504 (675)
T ss_pred             CC-CCCHHHHHHHHHH
T ss_conf             15-8836789999875


No 290
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=45.61  E-value=27  Score=16.73  Aligned_cols=66  Identities=12%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC--CCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             77899539989999999999978--9899998897-------99999998279989999504129695999999982
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS--GYIALQTRNG-------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~--g~~v~~a~~g-------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .||-++=.++...+.....++..  |..+....+|       ++-++.+.+..||+|++-+.+|.=  -.++.++++
T Consensus        49 ~~v~llG~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~div~vglG~PkQ--E~~~~~~~~  123 (172)
T pfam03808        49 KRVFLLGGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDLLFVGLGAPKQ--EKWIARNRA  123 (172)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHH
T ss_conf             838998088899999999999887995599987999986899999999984599999995698177--999999998


No 291
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.59  E-value=27  Score=16.72  Aligned_cols=69  Identities=17%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC---HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             99997898999988979999999827998999950412969---5999999982857689959999924998
Q gi|254780476|r   20 DLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS---GLEITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        20 ~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~d---G~el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      .+|..........+-..-|+..+--..|++.+||--+.-.|   --|++..+.......++||+-+|-+..+
T Consensus       120 hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E  191 (352)
T COG4148         120 HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE  191 (352)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             678508775676155677788887549773430684032365104677899999876218878999368999


No 292
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.15  E-value=27  Score=16.68  Aligned_cols=65  Identities=12%  Similarity=0.216  Sum_probs=36.0

Q ss_pred             CHHHHHHH---HHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             98999999---99999789899998897------9999999827998999950412969599999998285768995999
Q gi|254780476|r   11 NELNMKLF---RDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        11 ~~~~~~~l---~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |+...+++   .+.++..||.+..+.++      .++++.+.++.+|-+++-   |...--+..+.+++    .++|+|+
T Consensus        11 n~ff~~~~~~ie~~~~~~Gy~~~i~~s~~d~~~e~~~i~~l~~~~vdGiIi~---~~~~~~~~~~~l~~----~~iP~V~   83 (268)
T cd06273          11 NAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALI---GLDHSPALLDLLAR----RGVPYVA   83 (268)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHHH----CCCCEEE
T ss_conf             9899999999999999859999999589998999999999996599999991---89999899999997----5998999


Q ss_pred             E
Q ss_conf             9
Q gi|254780476|r   82 V   82 (123)
Q Consensus        82 ~   82 (123)
                      +
T Consensus        84 ~   84 (268)
T cd06273          84 T   84 (268)
T ss_pred             E
T ss_conf             8


No 293
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=45.13  E-value=27  Score=16.68  Aligned_cols=95  Identities=8%  Similarity=-0.028  Sum_probs=67.1

Q ss_pred             HHHHHHHCCCEEEEECCHH--HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf             9999997898999988979--99999982799899995041296959999999828576899599999249989999999
Q gi|254780476|r   18 FRDLIETSGYIALQTRNGM--EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR   95 (123)
Q Consensus        18 l~~~l~~~g~~v~~a~~g~--eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~   95 (123)
                      ++.-|..-.-++-.-.+-.  =..+.+...-||.+++|.+=-..|.-.++.+++........|||=.. ........+.+
T Consensus         8 fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ikq~L   86 (255)
T COG3836           8 FKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIKQLL   86 (255)
T ss_pred             HHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECC-CCCHHHHHHHH
T ss_conf             99998579966875215885799999985688879962532676589999999875325999866488-89889999996


Q ss_pred             HCCCCEEEECCCC-HHHHH
Q ss_conf             7699889987989-89999
Q gi|254780476|r   96 KGGCEAYISKPIS-LSIFM  113 (123)
Q Consensus        96 ~~g~~~~l~KPi~-~~~L~  113 (123)
                      +.|+...|.-=++ .++-.
T Consensus        87 D~GAqtlliPmV~s~eqAr  105 (255)
T COG3836          87 DIGAQTLLIPMVDTAEQAR  105 (255)
T ss_pred             CCCCCEEEEECCCCHHHHH
T ss_conf             2163136640358999999


No 294
>PTZ00089 transketolase; Provisional
Probab=45.13  E-value=27  Score=16.68  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             CEEEEECCCH---------HHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHH--CCCCEEEEEEEC----CCCC
Q ss_conf             7789953998---------999999999997898999988979-------99999982--799899995041----2969
Q gi|254780476|r    3 KKVMIVEDNE---------LNMKLFRDLIETSGYIALQTRNGM-------EALELARQ--HKPDVIIMDIQL----QEIS   60 (123)
Q Consensus         3 kkiLiVDD~~---------~~~~~l~~~l~~~g~~v~~a~~g~-------eal~~l~~--~~~dlillD~~m----p~~d   60 (123)
                      +=|+++|+|.         ...+-+..-++..||.|..+.+|.       +|++..+.  .+|-+|+....+    |..+
T Consensus       179 nLi~i~D~N~i~idg~~~~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak~~~~kPtlI~~~T~iG~Gs~~eG  258 (670)
T PTZ00089        179 RLILLYDDNKITIDGNTDLSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAKKNLKQPSLIIVQTACGFGTKVEG  258 (670)
T ss_pred             CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
T ss_conf             88999917721146885436566599999980771343366777999999999999855899848996422246557678


Q ss_pred             ---------HHHHHHHHHHCCCC
Q ss_conf             ---------59999999828576
Q gi|254780476|r   61 ---------GLEITKQIKEDSEL   74 (123)
Q Consensus        61 ---------G~el~~~ir~~~~~   74 (123)
                               |-|-++..|+...+
T Consensus       259 t~~~HG~pLg~eei~~~K~~lG~  281 (670)
T PTZ00089        259 TCKSHGLALKDEDLKKAKEFFGL  281 (670)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             75535887776999999997399


No 295
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP).  It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=45.02  E-value=27  Score=16.67  Aligned_cols=88  Identities=19%  Similarity=0.239  Sum_probs=44.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCC-EEE----EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHCCCCC
Q ss_conf             87789953998999999999997898-999----9889799999998279989999504129695999999-98285768
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGY-IAL----QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ-IKEDSELQ   75 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~-~v~----~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~-ir~~~~~~   75 (123)
                      .++|+-+||-.....        .|+ ++.    ...+-.++++.+.++.||+|+++    ++...+.++. ++. ....
T Consensus       108 ~~~i~tiEdPvE~~~--------~~~~Q~~v~~~~g~~~~~~lr~~LR~dPDvi~ig----EiRD~eta~~a~~a-a~tG  174 (264)
T cd01129         108 EKNIITVEDPVEYQI--------PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVG----EIRDAETAEIAVQA-ALTG  174 (264)
T ss_pred             CCEEEEEECCCCCCC--------CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEC----CCCCHHHHHHHHHH-HHHC
T ss_conf             850899867631456--------8873576166668789999999855699988746----88999999999999-9709


Q ss_pred             CCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             995999992499899999997699889
Q gi|254780476|r   76 EIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        76 ~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +.=+--+.+.+..+...+..++|++.+
T Consensus       175 hlV~tTlHa~~a~~~i~RL~~lgv~~~  201 (264)
T cd01129         175 HLVLSTLHTNDAPGAITRLLDMGIESY  201 (264)
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCHH
T ss_conf             969999703999999999998299989


No 296
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.95  E-value=27  Score=16.67  Aligned_cols=61  Identities=16%  Similarity=0.328  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             999999999789899998897------99999998279989999504129695999999982857689959999
Q gi|254780476|r   15 MKLFRDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .+.+...+...||.+..+.++      .+.++.+.++.+|-+++-   |....-+..+.+++    ..+|+|.+
T Consensus        18 ~~~i~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi~---~~~~~~~~~~~l~~----~~iPvV~~   84 (265)
T cd06285          18 YEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILG---DARSDDHFLDELTR----RGVPFVLV   84 (265)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHHH----CCCCEEEE
T ss_conf             999999999869989999799998999999999995699999976---88799899999996----79978998


No 297
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=44.69  E-value=28  Score=16.64  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             89959999924998999999976998899879898999999999740
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ..+|+|.- ....   ..+....|.++|+..|-+++.|.+++.+++.
T Consensus       287 ~G~PvV~s-~~gg---~~eii~~~~~G~l~~~~d~~~l~~~i~~~l~  329 (355)
T cd03819         287 MGRPVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS  329 (355)
T ss_pred             CCCCEEEE-CCCC---CHHHCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             69989990-8999---4766158997899889999999999999986


No 298
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=44.64  E-value=23  Score=17.08  Aligned_cols=91  Identities=11%  Similarity=0.053  Sum_probs=48.8

Q ss_pred             CEEEE-ECC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC--CCHHHHHHHHHHCCCCCCCC
Q ss_conf             77899-539-989999999999978989999889799999998279989999504129--69599999998285768995
Q gi|254780476|r    3 KKVMI-VED-NELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE--ISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         3 kkiLi-VDD-~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~--~dG~el~~~ir~~~~~~~ip   78 (123)
                      |.||+ |.| +....--+.+.|...||.+.....-.+.|   +++-..+-.+.+.-.+  -+--.+...|++    ..+-
T Consensus         1 KnVliSv~d~dK~~~l~~a~~l~~lGf~l~AT~GTa~~l---~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~----g~i~   73 (116)
T cd01423           1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFL---LENGIPVTPVAWPSEEPQNDKPSLRELLAE----GKID   73 (116)
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHH---HHCCCCCEEEEEECCCCCCCCCCHHHHHHC----CCEE
T ss_conf             929999402038999999999998799999841899999---986996579878624678999669999976----9868


Q ss_pred             EEEEEECC--------CHHHHHHHHHCCCC
Q ss_conf             99999249--------98999999976998
Q gi|254780476|r   79 VIAVTAFA--------MKGDEERIRKGGCE  100 (123)
Q Consensus        79 ii~~t~~~--------~~~~~~~~~~~g~~  100 (123)
                      .|+-|...        ....+..+.+.|+-
T Consensus        74 lVINtp~~~~~~~~~~g~~iRr~Av~~~Ip  103 (116)
T cd01423          74 LVINLPSNRGKRVLDNDYVMRRAADDFAVP  103 (116)
T ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             999888999864335458999999975999


No 299
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=44.62  E-value=22  Score=17.16  Aligned_cols=70  Identities=31%  Similarity=0.434  Sum_probs=43.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             8995399899999999999789-899998897999999982799899995041296959999999828576899599999
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g-~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      |=|.|||..-|-. +.+...-+ |+.....+ +--++.+..-+||+|+-|..=    --.+..+++...     |.|++-
T Consensus        71 VGIADDnk~krI~-k~Vr~ki~~ytSVGTRs-QPslE~Is~LKPDLIIAD~sR----Hk~vy~eLkKIA-----PTi~Lk  139 (310)
T COG4594          71 VGIADDNKKKRIL-KDVRDKIDPYTSVGTRS-QPSLEAISALKPDLIIADSSR----HKKVYKELKKIA-----PTIALK  139 (310)
T ss_pred             EEECCCCHHHHHH-HHHHHHCCCCCCCCCCC-CCCHHHHHCCCCCEEEECCHH----HHHHHHHHHHHC-----CEEEEC
T ss_conf             3311686165656-99985347742446778-987788860598769823045----677999997426-----546750


Q ss_pred             EC
Q ss_conf             24
Q gi|254780476|r   84 AF   85 (123)
Q Consensus        84 ~~   85 (123)
                      +.
T Consensus       140 S~  141 (310)
T COG4594         140 SR  141 (310)
T ss_pred             CC
T ss_conf             46


No 300
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=44.44  E-value=28  Score=16.62  Aligned_cols=71  Identities=15%  Similarity=0.026  Sum_probs=46.1

Q ss_pred             EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC----CCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             988979999999827998999950412969599999998285----768995999992499899999997699889
Q gi|254780476|r   31 QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        31 ~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~----~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      .+.+-.++++.+....+|.|.+|-.-| .++-.....+|...    ...+-..|..|+.-.........+.|++.|
T Consensus       190 e~~~~~~~~~~~~~~~~~~IrlD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~SGgi~~~~i~~~a~~gvd~i  264 (281)
T cd00516         190 EVDTLEEALEAAKAGGADGIRLDSGSP-EELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVF  264 (281)
T ss_pred             EECCHHHHHHHHHCCCCCEEEECCCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             978899999999549999999797995-889999999999987632578977999979999999999996798999


No 301
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=44.28  E-value=28  Score=16.61  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=59.4

Q ss_pred             HHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHH----HHHHHHHHCCCC---CCCCEEEEEECCCHH
Q ss_conf             99999789899998897999999982--799899995041296959----999999828576---899599999249989
Q gi|254780476|r   19 RDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGL----EITKQIKEDSEL---QEIPVIAVTAFAMKG   89 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~~g~eal~~l~~--~~~dlillD~~mp~~dG~----el~~~ir~~~~~---~~ipii~~t~~~~~~   89 (123)
                      -...++.|...-.+-+...-++.+..  ...|+|++=..=|+-.|-    +.+.+||+....   +.-..|-+-|.-...
T Consensus       102 i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~  181 (220)
T COG0036         102 IQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLE  181 (220)
T ss_pred             HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf             99999759857799789997789998986578999985779986631479999999999997402477599996896988


Q ss_pred             HHHHHHHCCCCEEEECC-----CCHHHHHHHHHHHHH
Q ss_conf             99999976998899879-----898999999999740
Q gi|254780476|r   90 DEERIRKGGCEAYISKP-----ISLSIFMETIKKYIG  121 (123)
Q Consensus        90 ~~~~~~~~g~~~~l~KP-----i~~~~L~~~i~~~l~  121 (123)
                      ...++.++|++-++.=.     =+....++.++..+.
T Consensus       182 t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~  218 (220)
T COG0036         182 TIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL  218 (220)
T ss_pred             HHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             8999997399999997778678119999999998762


No 302
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.23  E-value=28  Score=16.60  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=59.3

Q ss_pred             CEE-EEECCCHH---HHHHHHHHHHHCCCEEEE---E----CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             778-99539989---999999999978989999---8----897999999982799899995041296959999999828
Q gi|254780476|r    3 KKV-MIVEDNEL---NMKLFRDLIETSGYIALQ---T----RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kki-LiVDD~~~---~~~~l~~~l~~~g~~v~~---a----~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      ||+ ++.+|+..   ..+.++..++..|+++..   .    .+-...+..+++..||+|++-. ...-++..+.+++|+.
T Consensus       139 k~vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~~pD~v~~~~-~~~~~~~~~~~q~~~~  217 (347)
T cd06336         139 KKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGG-PSPAPAALVIKQAREL  217 (347)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHC
T ss_conf             789999237604699999999987525976999995488866779999999965969999916-6735799999999976


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             5768995999992499899999997699889
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      .  -+.|++..++..............+++.
T Consensus       218 G--~~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (347)
T cd06336         218 G--FKGGFLSCTGDKYDELLVATGADFMEGV  246 (347)
T ss_pred             C--CCCCEEEECCCCCHHHHHHHHHHHHCCE
T ss_conf             9--9875898657666799998538864937


No 303
>PRK08506 replicative DNA helicase; Provisional
Probab=43.99  E-value=28  Score=16.58  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=36.7

Q ss_pred             HHHHHHCCCEEEEEC--CHHHHH---HHH-HHC-CCCEEEEEEE--CCCCCH--------HHHHHHHHHCCCCCCCCEEE
Q ss_conf             999997898999988--979999---999-827-9989999504--129695--------99999998285768995999
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGMEAL---ELA-RQH-KPDVIIMDIQ--LQEISG--------LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~eal---~~l-~~~-~~dlillD~~--mp~~dG--------~el~~~ir~~~~~~~ipii~   81 (123)
                      ...+..+.+.+....  +-.+-.   +.+ +++ ..++|++||-  |.....        -++.+.+|....--++|||+
T Consensus       269 ~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livIDYLQLm~~~~~~~~R~~ev~~ISr~LK~lAkEl~vPVia  348 (473)
T PRK08506        269 CDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSKNFKDRHLQISEISRGLKLLARELDIPIIA  348 (473)
T ss_pred             HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             99986598899889999999999999999997699878996367554688875308899999999999999996997999


Q ss_pred             EEEC
Q ss_conf             9924
Q gi|254780476|r   82 VTAF   85 (123)
Q Consensus        82 ~t~~   85 (123)
                      +|=-
T Consensus       349 LSQL  352 (473)
T PRK08506        349 LSQL  352 (473)
T ss_pred             ECCC
T ss_conf             7036


No 304
>PRK08104 consensus
Probab=43.90  E-value=28  Score=16.57  Aligned_cols=84  Identities=14%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             HHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf             999978989-9998897999999982-79989999504129695999999982857689959999924998999999976
Q gi|254780476|r   20 DLIETSGYI-ALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG   97 (123)
Q Consensus        20 ~~l~~~g~~-v~~a~~g~eal~~l~~-~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~   97 (123)
                      ++|+..... |....+.++|..+++. ..=.+=++.+.|-.-+.++..+.+++..  .++ +|..-+-...+..+++.++
T Consensus        10 ~ll~~~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~--p~~-~vGaGTV~~~e~~~~ai~a   86 (212)
T PRK08104         10 DIFTRGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTPCALEAIRAIAKEV--PEA-IVGAGTVLNPQQLAEVTEA   86 (212)
T ss_pred             HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC--CCC-EEEEEECCCHHHHHHHHHC
T ss_conf             9997498689997799999999999999879988999688814999999999868--985-6854202679999999985


Q ss_pred             CCCEEEECCC
Q ss_conf             9988998798
Q gi|254780476|r   98 GCEAYISKPI  107 (123)
Q Consensus        98 g~~~~l~KPi  107 (123)
                      |++ |+.-|.
T Consensus        87 GA~-FiVSP~   95 (212)
T PRK08104         87 GAQ-FAISPG   95 (212)
T ss_pred             CCC-EEECCC
T ss_conf             999-998489


No 305
>TIGR01556 rhamnosyltran rhamnosyltransferase; InterPro: IPR006446   This subfamily is composed of sequences from the gamma proteobacteria that function as L-rhamnosyltransferases in the synthesis of their respective surface polysaccharides. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In Pseudomonas aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids . .
Probab=43.81  E-value=28  Score=16.56  Aligned_cols=65  Identities=11%  Similarity=0.248  Sum_probs=44.2

Q ss_pred             CEEEEECCC--HHHHHHHHHHHHH-CCCEEEEECCHHHHHHH---------HHHCCCCEEEEEEE-CCCCCHHH-HHHHH
Q ss_conf             778995399--8999999999997-89899998897999999---------98279989999504-12969599-99999
Q gi|254780476|r    3 KKVMIVEDN--ELNMKLFRDLIET-SGYIALQTRNGMEALEL---------ARQHKPDVIIMDIQ-LQEISGLE-ITKQI   68 (123)
Q Consensus         3 kkiLiVDD~--~~~~~~l~~~l~~-~g~~v~~a~~g~eal~~---------l~~~~~dlillD~~-mp~~dG~e-l~~~i   68 (123)
                      -+|++||++  ..++.-+++.+.. ++..+..-++- +++..         ++.+.-.++++|.. .|..||.+ ++...
T Consensus        25 ~~~i~vDN~~~s~~~~~l~~~~~~~~~i~~i~ls~n-~GiA~AqN~Gl~~~~~~~~~~vlLlDqDS~~~~~~~~~fl~~~  103 (291)
T TIGR01556        25 DKIIVVDNSSLSEIRSELKELLAKKEKIKLISLSDN-EGIAAAQNLGLKASFKKGVEKVLLLDQDSRPAEDGVNKFLAKE  103 (291)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             089999789543320578999850077689963785-4128898799999987389668885127843203489999999


No 306
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.80  E-value=28  Score=16.56  Aligned_cols=87  Identities=14%  Similarity=0.245  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCC----HHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             99999999997898999-988979999999827998999950412969----5999999982857689959999924998
Q gi|254780476|r   14 NMKLFRDLIETSGYIAL-QTRNGMEALELARQHKPDVIIMDIQLQEIS----GLEITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~v~-~a~~g~eal~~l~~~~~dlillD~~mp~~d----G~el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      ..+-+.......|.++. ++.+.+|.-..+.. .+++|=+  +=-+..    ..+...++...-. .+..+|.=||-...
T Consensus       109 ~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~-~a~iIGI--NnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~~~  184 (217)
T cd00331         109 QLKELYELARELGMEVLVEVHDEEELERALAL-GAKIIGI--NNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTP  184 (217)
T ss_pred             HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHC-CCCEEEE--CCCCCHHCEECHHHHHHHHHHCC-CCCEEEECCCCCCH
T ss_conf             99999999999498279885899999999957-9987842--16771230347899999996489-89889982799999


Q ss_pred             HHHHHHHHCCCCEEEE
Q ss_conf             9999999769988998
Q gi|254780476|r   89 GDEERIRKGGCEAYIS  104 (123)
Q Consensus        89 ~~~~~~~~~g~~~~l~  104 (123)
                      .+.....+.|++++|.
T Consensus       185 ~di~~l~~~G~d~~LI  200 (217)
T cd00331         185 EDVKRLAEAGADAVLI  200 (217)
T ss_pred             HHHHHHHHCCCCEEEE
T ss_conf             9999999879999998


No 307
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=43.64  E-value=29  Score=16.55  Aligned_cols=69  Identities=17%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             99988979999999827998999950412969599999998285768995999992499899999997699889
Q gi|254780476|r   29 ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        29 v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      ..++.+-+|+.+.+.. .+|.|++|=.-|+ +=-+....+|+...  . ..+-.||.-..+...+..+.|++.+
T Consensus        84 ~VEv~tl~e~~~a~~~-~~d~I~LDn~spe-~l~~~v~~l~~~~~--~-v~iEaSGgI~~~ni~~yA~tGvD~I  152 (169)
T pfam01729        84 EVEVENLEELEEALEA-GADIIMLDNFSPE-EVREAVEELDERAG--R-VLLEVSGGITLDNVLEYAKTGVDVI  152 (169)
T ss_pred             EEEEEHHHHHHHHHHC-CCCEEEECCCCHH-HHHHHHHHHHHHCC--C-EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             9996019989999846-9989997799999-99999999997589--6-7999618999999999997699999


No 308
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=43.55  E-value=29  Score=16.54  Aligned_cols=45  Identities=22%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             HHHHCCCCEEEEEEE--CC--CC---CHH----HHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             998279989999504--12--96---959----99999982857689959999924
Q gi|254780476|r   41 LARQHKPDVIIMDIQ--LQ--EI---SGL----EITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        41 ~l~~~~~dlillD~~--mp--~~---dG~----el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      +.+.+.+|+|++|+-  |.  +.   +-.    ++++.+|.....-++||++++--
T Consensus       135 ~~~~~~~~~vvIDylqll~~~~~~~~d~~~~i~~i~~~Lk~lAke~~v~Vi~lsQl  190 (271)
T cd01122         135 MAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL  190 (271)
T ss_pred             HHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99828998899831785036786773189999999999999999979977999526


No 309
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=43.39  E-value=29  Score=16.52  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=52.2

Q ss_pred             CCEEEEECCCH----HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             87789953998----999999999997898999988-------9799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIVEDNE----LNMKLFRDLIETSGYIALQTR-------NGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiVDD~~----~~~~~l~~~l~~~g~~v~~a~-------~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .||+-++.+|-    ...+.++..++..|.++....       +-...+..++...||+|++  ..++-++..++++.|+
T Consensus       133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~ki~~a~pD~v~~--~~~g~~~~~~~~q~~~  210 (348)
T cd06355         133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVS--TVNGDSNVAFFKQLKA  210 (348)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf             98799991685134899999999999859989999813799756799999999769999999--4765124899999998


Q ss_pred             CCCC-CCCCEEEE
Q ss_conf             8576-89959999
Q gi|254780476|r   71 DSEL-QEIPVIAV   82 (123)
Q Consensus        71 ~~~~-~~ipii~~   82 (123)
                      ..-. +.+|++..
T Consensus       211 ~G~~~~~~~~~~~  223 (348)
T cd06355         211 AGITASKVPVLSF  223 (348)
T ss_pred             HCCCCCCCEEEEE
T ss_conf             1787667358884


No 310
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.27  E-value=29  Score=16.52  Aligned_cols=60  Identities=20%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
Q ss_conf             87789953998999999999997---89899998897999999982799899995041296959999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET---SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT   65 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~---~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~   65 (123)
                      .++||-+||--....-=++-|=+   .|..   +.+-..||+..-++.||+|++ -.|-+..-.+++
T Consensus       154 ~~HIlTIEDPIE~vh~skkslI~QREvG~d---T~sF~~aLraALReDPDVIlv-GEmRD~ETi~~A  216 (353)
T COG2805         154 AKHILTIEDPIEYVHESKKSLINQREVGRD---TLSFANALRAALREDPDVILV-GEMRDLETIRLA  216 (353)
T ss_pred             CCCEEEECCCHHHHHCCHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHH
T ss_conf             751687237468650432766668774542---788999999986029997998-213469999999


No 311
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps:   Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i  Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein   In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=43.24  E-value=29  Score=16.51  Aligned_cols=52  Identities=17%  Similarity=0.192  Sum_probs=36.7

Q ss_pred             HHCCCCEEEEEEECCCC-----CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf             82799899995041296-----959999999828576899599999249989999999
Q gi|254780476|r   43 RQHKPDVIIMDIQLQEI-----SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR   95 (123)
Q Consensus        43 ~~~~~dlillD~~mp~~-----dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~   95 (123)
                      ...|.-+.++|...-+.     -|-.+++.|-.. ...++|+|++||+...--.+-.+
T Consensus       125 ~~~P~~~av~dF~FmGGSmGSVvGeK~vraie~A-~~~~~P~~i~sASGGARMQE~~~  181 (292)
T TIGR00515       125 YGMPIVVAVMDFSFMGGSMGSVVGEKIVRAIEKA-VADRVPLVIFSASGGARMQEGLL  181 (292)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCCHHHHHHHH
T ss_conf             4842799975143458863026888999999999-87379889996787516899988


No 312
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=43.02  E-value=29  Score=16.49  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             7899539989999999999978989--99988979999999827998999950412969599999998285
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDS   72 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~   72 (123)
                      +|.-+|-++...+.-+..|..+|+.  .....+|.+++.  ...+||.|++.-..|..- -.+..+++...
T Consensus       100 ~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~--~~apfD~Iiv~aa~~~iP-~~l~~qL~~gG  167 (205)
T pfam01135       100 RVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWP--EFAPYDAIHVGAAAPEIP-EALIDQLKEGG  167 (205)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCEEEEEEECCCCC-HHHHHHCCCCC
T ss_conf             699983589999999999998488865898456455883--339805899975067688-99999628797


No 313
>PRK04195 replication factor C large subunit; Provisional
Probab=43.00  E-value=29  Score=16.49  Aligned_cols=95  Identities=19%  Similarity=0.282  Sum_probs=50.9

Q ss_pred             HHHHCCCEEEEE--CC--HHHHHHHHH----H------CCCCEEEEEEECCCCC------HH-HHHHHHHHCCCCCCCCE
Q ss_conf             999789899998--89--799999998----2------7998999950412969------59-99999982857689959
Q gi|254780476|r   21 LIETSGYIALQT--RN--GMEALELAR----Q------HKPDVIIMDIQLQEIS------GL-EITKQIKEDSELQEIPV   79 (123)
Q Consensus        21 ~l~~~g~~v~~a--~~--g~eal~~l~----~------~~~dlillD~~mp~~d------G~-el~~~ir~~~~~~~ipi   79 (123)
                      +.+..||++.+.  ++  +.+.++...    .      .+..+|++|= .++++      |. ++.+-|++    ...||
T Consensus        60 lAk~~g~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDE-vD~l~~~~d~gg~~al~~~ik~----s~~Pi  134 (403)
T PRK04195         60 LANDYGWEVIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDE-VDGIHGNADRGGVRAILEIIKK----AKNPI  134 (403)
T ss_pred             HHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHC----CCCEE
T ss_conf             999849985997710114789999999987606887788734999634-3445724447999999999854----88708


Q ss_pred             EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999924998999999976998899879898999999999740
Q gi|254780476|r   80 IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        80 i~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |++....... ..+.+...+..+-.+|++.+.+...++++..
T Consensus       135 Ili~Nd~~~~-~~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~  175 (403)
T PRK04195        135 ILTANDPYDP-SLRPLRNACLMIEFKRLSKRSIVPVLKRICR  175 (403)
T ss_pred             EEEECCCCCC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9982684556-7177997661221799499999999999999


No 314
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction.  In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=42.83  E-value=30  Score=16.47  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             CCEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             8778995-3998---9999999999978989999-------889799999998279989999504129695999999982
Q gi|254780476|r    2 LKKVMIV-EDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE   70 (123)
Q Consensus         2 ~kkiLiV-DD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~   70 (123)
                      .|||-++ +|+.   ...+.++..++..|.+|..       ..+-...+..++...||+|++-  +..-++..+++++|+
T Consensus       132 ~kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~  209 (333)
T cd06331         132 GKRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLST--LVGDSNVAFYRQFAA  209 (333)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHH
T ss_conf             987999944861789999999999998599499999706997247999999876599999993--566039999999997


Q ss_pred             CCCCCCCCEEEEEECCCHHHH
Q ss_conf             857689959999924998999
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDE   91 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~   91 (123)
                      ..-... .+.+.+........
T Consensus       210 ~G~~~~-~~~~~~~~~~~~~~  229 (333)
T cd06331         210 AGLDAD-RIPILSLTLDENEL  229 (333)
T ss_pred             CCCCCC-CEEEEECCCCHHHH
T ss_conf             599966-61899754567889


No 315
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=42.76  E-value=30  Score=16.47  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             CEE-EEECCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             778-9953998---9999999999978989999-------8897999999982799899995041296959999999828
Q gi|254780476|r    3 KKV-MIVEDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kki-LiVDD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      ||+ +|.+|+.   ...+.++..++..|.++..       ..+-...+..++...||+|++-  ....++..++++.|+.
T Consensus       136 kkva~i~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~  213 (334)
T cd06327         136 KKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLA--NAGADTVNAIKQAAEF  213 (334)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC
T ss_conf             87999953745669999999999996598799999628997556899988775599999991--6654799999999974


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCCCCE-EEECCCC-------HHHHHHHHHHHHH
Q ss_conf             576899599999249989999999769988-9987989-------8999999999740
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGGCEA-YISKPIS-------LSIFMETIKKYIG  121 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~-~l~KPi~-------~~~L~~~i~~~l~  121 (123)
                      .-..  ++.+.+...........-...+++ |.+-|+.       ..+|.+..++..|
T Consensus       214 G~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g  269 (334)
T cd06327         214 GLTK--GQKLAGLLLFLTDVHSLGLDAAQGLYLTTAWYWDLPNDETRAFVKRFQAKYG  269 (334)
T ss_pred             CCCC--CCEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             9988--8678864677799987527861857997056656677779999999999868


No 316
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=42.70  E-value=30  Score=16.46  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=36.6

Q ss_pred             HCCCCEEEEEE------ECCCCCHH--HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             27998999950------41296959--9999998285768995999992499899999997699889
Q gi|254780476|r   44 QHKPDVIIMDI------QLQEISGL--EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        44 ~~~~dlillD~------~mp~~dG~--el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +.-.|++=+..      .++...|+  .+++.||+..   ++||+...........+++++.|..|+
T Consensus       238 ~~GvD~i~vs~G~~~~~~~~~~~g~~~~~a~~ik~~~---~ipvi~vG~i~~~~~ae~~l~~G~aD~  301 (337)
T PRK13523        238 EQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIKEHA---NIATGAVGLITTGAQAEEILNNNRADL  301 (337)
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCH
T ss_conf             7499989957885547767778753348999999876---970999838699999999998799479


No 317
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.54  E-value=30  Score=16.45  Aligned_cols=96  Identities=11%  Similarity=0.250  Sum_probs=61.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             778995399899999999999789899998-8979999999827998999950412969599999998285768995999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQT-RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a-~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      .++.++|.|+...+..    ...|+.+.-. .+-.+-++.+.-++-.++++-+.=| .+-.++.+.+|++.  +++||++
T Consensus       424 i~~vviD~d~~~V~~~----r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~-~~~~~iv~~~r~~~--P~l~I~a  496 (602)
T PRK03659        424 MRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-EDTMKLVELCQQHF--PHLHILA  496 (602)
T ss_pred             CCEEEEECCHHHHHHH----HHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCH-HHHHHHHHHHHHHC--CCCEEEE
T ss_conf             9989997867999999----978990897589999999867904058899982989-99999999999878--6996999


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             99249989999999769988998798
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      =+  ....+..+..+.|++.++.--+
T Consensus       497 Ra--r~~~~~~~L~~~Ga~~vv~Et~  520 (602)
T PRK03659        497 RA--RGRVEAHELLQAGVTQFSRETF  520 (602)
T ss_pred             EE--CCHHHHHHHHHCCCCEEECCHH
T ss_conf             86--9789999999789997866278


No 318
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=42.09  E-value=30  Score=16.41  Aligned_cols=54  Identities=19%  Similarity=0.301  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |.-+++...     ..+|+|..-....   ..+..+.|.++||.+|-+.+.|.++|.+.+.+
T Consensus       273 p~vllEAma-----~G~PvIatd~~~G---~~EiI~dg~nG~Lv~~~d~~~la~~i~~li~~  326 (361)
T PRK09922        273 PMTLLEAMS-----YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG  326 (361)
T ss_pred             CCHHHHHHH-----HCCCEEEECCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             728999999-----5998999759999---08871589837997799999999999999848


No 319
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=41.79  E-value=31  Score=16.38  Aligned_cols=56  Identities=18%  Similarity=0.132  Sum_probs=35.3

Q ss_pred             HHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             99999827998999950412-----969599999998285768995999992499899999997
Q gi|254780476|r   38 ALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK   96 (123)
Q Consensus        38 al~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~   96 (123)
                      |.+++.+..+|+|++|=-..     -.+==|+..-+++.|...+   |++|+...+.......+
T Consensus       114 a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~---vIiTGr~ap~~lie~AD  174 (198)
T COG2109         114 AKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTH---VIITGRGAPPELIELAD  174 (198)
T ss_pred             HHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCE---EEEECCCCCHHHHHHHH
T ss_conf             99997388878899721268887388879999999955998767---99979999989999877


No 320
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.61  E-value=31  Score=16.36  Aligned_cols=81  Identities=21%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHCCC-CEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHC---CCCEEEE---
Q ss_conf             7999999982799-899995041296-95--999999982857689959999924998999999976---9988998---
Q gi|254780476|r   35 GMEALELARQHKP-DVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG---GCEAYIS---  104 (123)
Q Consensus        35 g~eal~~l~~~~~-dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~---g~~~~l~---  104 (123)
                      ..+.++.+.+... .+++.|+.--++ .|  +++++.+++..   ++|+|+--+-...++..+..+.   |+++.+.   
T Consensus       147 ~~~~i~~~~~~G~~eii~tdI~~DGt~~G~d~~l~~~i~~~~---~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG~A  223 (241)
T PRK00748        147 LEDLAKRFEDAGVAAIIYTDISRDGTLSGPNVELTRELAAAT---PIPVIASGGVSSLDDIRALKALGPEGVEGVIVGKA  223 (241)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHH
T ss_conf             899999998558756999887056854768999999999868---99899988999999999998603179248998789


Q ss_pred             ---CCCCHHHHHHHHHH
Q ss_conf             ---79898999999999
Q gi|254780476|r  105 ---KPISLSIFMETIKK  118 (123)
Q Consensus       105 ---KPi~~~~L~~~i~~  118 (123)
                         .-++.++.+..++.
T Consensus       224 ly~g~i~l~eal~~~~~  240 (241)
T PRK00748        224 LYEGKFDLAEALACWQN  240 (241)
T ss_pred             HHCCCCCHHHHHHHHHC
T ss_conf             87799899999998652


No 321
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.54  E-value=31  Score=16.36  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=47.2

Q ss_pred             CCEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE------CCCCHHHHHHHHH
Q ss_conf             9899995041296-95--9999999828576899599999249989999999769988998------7989899999999
Q gi|254780476|r   47 PDVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS------KPISLSIFMETIK  117 (123)
Q Consensus        47 ~dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~------KPi~~~~L~~~i~  117 (123)
                      -.+++.|+.-.++ .|  +++++++++.   .++|+|+--+-...++..++.+.|+++.+.      .-+++.++.+.++
T Consensus       167 geil~tdI~rDGt~~G~d~~l~~~i~~~---~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~L~  243 (252)
T PRK13597        167 GEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRYLA  243 (252)
T ss_pred             CEEEEEEECCCCCCCCCCHHHHHHHHHC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHH
T ss_conf             9999975737684447695999999850---7998999789899999999987899699871276779999999999999


No 322
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.47  E-value=31  Score=16.35  Aligned_cols=64  Identities=13%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             HHHHCCCCEEEEEEECCC----CCHH----------HHHHHHHHCCCCCCCCEEEEEECCCHHHHH----HHHHCCC--C
Q ss_conf             998279989999504129----6959----------999999828576899599999249989999----9997699--8
Q gi|254780476|r   41 LARQHKPDVIIMDIQLQE----ISGL----------EITKQIKEDSELQEIPVIAVTAFAMKGDEE----RIRKGGC--E  100 (123)
Q Consensus        41 ~l~~~~~dlillD~~mp~----~dG~----------el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~~~~~g~--~  100 (123)
                      ......|.+=++-+..|.    ..|+          +..+..|+.....++|-|++|+......-.    -+.++|+  +
T Consensus       191 efs~~~ygvDvlKvE~Pvn~~~veg~~~ge~~yt~~ea~~~fke~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGa~fs  270 (324)
T PRK12399        191 VFSKPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAATDLPYIYLSAGVSAELFQETLVFAHEAGAKFN  270 (324)
T ss_pred             HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             97033569876986157660101355667521129999999999874459997998089998999999999998599733


Q ss_pred             EEEE
Q ss_conf             8998
Q gi|254780476|r  101 AYIS  104 (123)
Q Consensus       101 ~~l~  104 (123)
                      +||-
T Consensus       271 G~L~  274 (324)
T PRK12399        271 GVLC  274 (324)
T ss_pred             CEEE
T ss_conf             5534


No 323
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=41.17  E-value=31  Score=16.32  Aligned_cols=66  Identities=24%  Similarity=0.371  Sum_probs=49.2

Q ss_pred             ECCHHHHHHHHH-HCCCCEE-EEEEECCCCCHHHHHHHHH----HC-CCCCCCCEEEEEECCCHHHHHHHHHC
Q ss_conf             889799999998-2799899-9950412969599999998----28-57689959999924998999999976
Q gi|254780476|r   32 TRNGMEALELAR-QHKPDVI-IMDIQLQEISGLEITKQIK----ED-SELQEIPVIAVTAFAMKGDEERIRKG   97 (123)
Q Consensus        32 a~~g~eal~~l~-~~~~dli-llD~~mp~~dG~el~~~ir----~~-~~~~~ipii~~t~~~~~~~~~~~~~~   97 (123)
                      .++-+||+..+. +.+|.+| ++...|-+--|-+..+.||    ++ +++++++||.+++-+-++..+..+..
T Consensus        76 ~~~i~eAid~l~~r~kP~~IGl~sTgLtEtrG~Di~~~~r~~r~~hvp~~~g~~vv~VnTPDF~G~~e~G~A~  148 (451)
T TIGR01285        76 DEHIEEAIDTLKKRAKPKVIGLLSTGLTETRGEDIARVVRQFREKHVPQLKGTEVVLVNTPDFKGSLEDGYAK  148 (451)
T ss_pred             CCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH
T ss_conf             6038899897305878548998744554123000378999998864055439628998778754623458999


No 324
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.91  E-value=32  Score=16.30  Aligned_cols=112  Identities=13%  Similarity=0.206  Sum_probs=72.9

Q ss_pred             CCEEEEE-CCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             8778995-399899999999999789--8999988979999999827998999950412969599999998285768995
Q gi|254780476|r    2 LKKVMIV-EDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus         2 ~kkiLiV-DD~~~~~~~l~~~l~~~g--~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      ...||+. |+|+...+.+.+..++||  |.+....|...-++.+++   .=+.+-+.|=+.+--++...||+....   -
T Consensus        32 A~gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~nw~~~i~~wk~---gG~vvHLTMYG~~i~dv~~ei~~~~k~---~  105 (179)
T COG1303          32 ADGILLDGEEDEKVVESVEDVVERWGGPFFVKFGVNWRKVIREWKE---GGIVVHLTMYGLNIDDVIDEIRESKKD---V  105 (179)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC---CCEEEEEEECCCCCHHHHHHHHHCCCC---E
T ss_conf             7547973764377999999999854997799972238999987404---877999996277630341898746872---7


Q ss_pred             EEEEEECCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHH
Q ss_conf             999992499899999997699889987989-899999999974
Q gi|254780476|r   79 VIAVTAFAMKGDEERIRKGGCEAYISKPIS-LSIFMETIKKYI  120 (123)
Q Consensus        79 ii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-~~~L~~~i~~~l  120 (123)
                      +|++-+.--+....+..+..+ +.=+.|.+ ...|.-.+.+++
T Consensus       106 lvvVGaeKVp~evYelADyNV-~VgnQPHSEVaaLAvFLDRl~  147 (179)
T COG1303         106 LVVVGAEKVPGEVYELADYNV-SVGNQPHSEVAALAVFLDRLF  147 (179)
T ss_pred             EEEECCCCCCHHHHHHCCCCE-ECCCCCCHHHHHHHHHHHHHH
T ss_conf             999756628888964234413-307876089999999999971


No 325
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=40.89  E-value=32  Score=16.30  Aligned_cols=111  Identities=15%  Similarity=0.163  Sum_probs=66.6

Q ss_pred             EEECCCHHHHHHHH---HHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99539989999999---999978989999889799999998279989999504129695999999982857689959999
Q gi|254780476|r    6 MIVEDNELNMKLFR---DLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         6 LiVDD~~~~~~~l~---~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      ||--|++..-.-++   .-+...|..+...+|..+.--.--.++.|+=++--- -.-.|..+-+.+++.. ++.--++| 
T Consensus        39 Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A-~KP~~~~fr~Al~~m~-l~~~~vvm-  115 (175)
T COG2179          39 LVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA-KKPFGRAFRRALKEMN-LPPEEVVM-  115 (175)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHCC-CCHHHEEE-
T ss_conf             11046998999999999999865977999818978888766652597234022-5962799999999809-98368799-


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHH
Q ss_conf             92499899999997699889987989-89999999997
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPIS-LSIFMETIKKY  119 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi~-~~~L~~~i~~~  119 (123)
                      .|...-.|..-.-.+|+..++.+|+. ++.+...+.|.
T Consensus       116 VGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR~  153 (175)
T COG2179         116 VGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINRW  153 (175)
T ss_pred             ECCHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf             85125566641341472799998711664055555689


No 326
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=40.62  E-value=32  Score=16.27  Aligned_cols=94  Identities=23%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEE----EECCHHHHHHHHHHCCC-CEEEEEEE--------CCCCCH----------H
Q ss_conf             9953998999999999997898999----98897999999982799-89999504--------129695----------9
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGYIAL----QTRNGMEALELARQHKP-DVIIMDIQ--------LQEISG----------L   62 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~~v~----~a~~g~eal~~l~~~~~-dlillD~~--------mp~~dG----------~   62 (123)
                      +.+||-+..+. +.+-|-.-|..+.    ....+.||++.++.+.| |+++==-.        -....|          -
T Consensus        14 i~~~~~~~A~~-lA~aL~egG~~~~EvTlRT~~A~~aI~~l~~~~P~~~~iGAGTVL~~~Q~~~A~~AGA~F~vSPG~~p   92 (205)
T TIGR01182        14 IRIDDVEDALP-LAKALIEGGLRVLEVTLRTPVALEAIRALRKEVPKDALIGAGTVLNPEQLRQAVAAGAQFIVSPGLTP   92 (205)
T ss_pred             EEECCHHHHHH-HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCCEEECCCCCH
T ss_conf             87267877789-99999867980898851472168999999972823348716764898999999970895787697888


Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf             99999982857689959999924998999999976998899879
Q gi|254780476|r   63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP  106 (123)
Q Consensus        63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KP  106 (123)
                      ++++...    .+.+|+|  =|-.++....++++.|++.+-.=|
T Consensus        93 ~l~~~~~----~~~~P~i--PGV~tpsEi~~Al~~G~~~lKlFP  130 (205)
T TIGR01182        93 ELAKHAK----DKGIPII--PGVATPSEIMLALELGITALKLFP  130 (205)
T ss_pred             HHHHHHH----HCCCCEE--CCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             9999985----0888121--777687899999875774652125


No 327
>PRK06202 hypothetical protein; Provisional
Probab=40.60  E-value=32  Score=16.27  Aligned_cols=75  Identities=12%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             789953998999999999997898999988979999999827998999950412969599999998285768995999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      +|.=+|=|+...+.-+..-...|..+..+..  +++.. ..+.||+|+....+-..+.-++..-++........-+++
T Consensus        91 ~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~--d~l~~-~~~~~DvV~~sl~LHHf~d~ql~~ll~~~~~~ar~~vvi  165 (233)
T PRK06202         91 EVTAIDPDPRAIRFARANARRRGVTFRFAVS--DELVA-EGERFDVVYSNHFLHHLDDADVVRLLADMAALARRLVLH  165 (233)
T ss_pred             EEEEECCCHHHHHHHHHHCCCCCCCEEEEEH--HHHCC-CCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf             8999779889999998734036983699734--32024-578875760324686498299999999999863826997


No 328
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia.  This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=40.54  E-value=32  Score=16.26  Aligned_cols=65  Identities=22%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             CHHHHHH---HHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             9899999---999999789899998897------9999999827998999950412969599999998285768995999
Q gi|254780476|r   11 NELNMKL---FRDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        11 ~~~~~~~---l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |+...++   +...++..||.+..+.+.      .+.++.+.++.+|-+++--   ...--+..+.+++    ..+|+|+
T Consensus        11 npff~~~~~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~~---~~~~~~~~~~l~~----~~iPvV~   83 (265)
T cd06299          11 NPYFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVP---HEQSAEQLEDLLK----RGIPVVF   83 (265)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE---CCCCHHHHHHHHH----CCCCEEE
T ss_conf             89999999999999998599899997899989999999999947999999980---6799899999996----6998998


Q ss_pred             E
Q ss_conf             9
Q gi|254780476|r   82 V   82 (123)
Q Consensus        82 ~   82 (123)
                      +
T Consensus        84 i   84 (265)
T cd06299          84 V   84 (265)
T ss_pred             E
T ss_conf             3


No 329
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695   Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis.   Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis.  .
Probab=40.39  E-value=15  Score=18.24  Aligned_cols=85  Identities=20%  Similarity=0.314  Sum_probs=55.3

Q ss_pred             HHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEE-------E-EEECCCCC---HHHHHHHHHHCCCCCCCCEEEE-
Q ss_conf             999999997898-999988979999999827998999-------9-50412969---5999999982857689959999-
Q gi|254780476|r   16 KLFRDLIETSGY-IALQTRNGMEALELARQHKPDVII-------M-DIQLQEIS---GLEITKQIKEDSELQEIPVIAV-   82 (123)
Q Consensus        16 ~~l~~~l~~~g~-~v~~a~~g~eal~~l~~~~~dlil-------l-D~~mp~~d---G~el~~~ir~~~~~~~ipii~~-   82 (123)
                      ..+++.++..+. +.-.+-||.-||..=+.. |+-|=       - ++.||+..   =-|++..+|+..+..++|+|+= 
T Consensus         3 ~~fR~a~~~~~ilq~pGa~n~~~AL~Ae~aG-F~A~YLSGaa~aa~sLGlPDLG~~tL~Eva~~~r~Itr~~~LPlLVD~   81 (287)
T TIGR02317         3 KRFREAIAKEDILQIPGAINGLVALLAERAG-FEAIYLSGAAVAAGSLGLPDLGITTLTEVAERARRITRVTDLPLLVDA   81 (287)
T ss_pred             HHHHHHHHCCCCEEECCHHHHHHHHHHHHCC-CCEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             1059998568974871406189999998637-556610168774132067767667878999998877753048727863


Q ss_pred             -EECCCHHHHH----HHHHCCCCE
Q ss_conf             -9249989999----999769988
Q gi|254780476|r   83 -TAFAMKGDEE----RIRKGGCEA  101 (123)
Q Consensus        83 -t~~~~~~~~~----~~~~~g~~~  101 (123)
                       ||+...=...    +..++|+-+
T Consensus        82 DTGFGea~nvaRTVreme~AGaAa  105 (287)
T TIGR02317        82 DTGFGEALNVARTVREMEDAGAAA  105 (287)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             328983544999999999844540


No 330
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=40.28  E-value=32  Score=16.24  Aligned_cols=70  Identities=24%  Similarity=0.393  Sum_probs=47.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----------HHHHHHHHC
Q ss_conf             8778995399899999999999789899998897999999982799899995041296959----------999999828
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL----------EITKQIKED   71 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~----------el~~~ir~~   71 (123)
                      |++|.|||=..-|..-++..|+..|+++....+.++..      .-|.++    +|+..-|          .+.+.|++.
T Consensus         1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~------~AD~li----LPGVGaf~~am~~L~~~gl~~~i~~~   70 (204)
T COG0118           1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL------KADKLI----LPGVGAFGAAMANLRERGLIEAIKEA   70 (204)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHH------HCCEEE----ECCCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf             97899997286359999999997598069816988971------088878----66978889999988863669999999


Q ss_pred             CCCCCCCEEEE
Q ss_conf             57689959999
Q gi|254780476|r   72 SELQEIPVIAV   82 (123)
Q Consensus        72 ~~~~~ipii~~   82 (123)
                      -. ...|++.+
T Consensus        71 ~~-~~kP~LGI   80 (204)
T COG0118          71 VE-SGKPFLGI   80 (204)
T ss_pred             HH-CCCCEEEE
T ss_conf             75-59977998


No 331
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain.  The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA  (also known as UvrY,  and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA.  A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium.  Moreover, despite a low primary sequence similarity,  the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.19  E-value=33  Score=16.23  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH
Q ss_conf             78995399899999999999789899998897
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNG   35 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g   35 (123)
                      .+.|+-||+..++-+.+++++.||.+....++
T Consensus        27 ~l~Vlvd~~~a~~ni~~~a~~~G~~v~~~e~~   58 (67)
T cd03421          27 EIEVLVDNEVAKENVSRFAESRGYEVSVEEKG   58 (67)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             79999868417889999999779987899839


No 332
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.94  E-value=33  Score=16.21  Aligned_cols=47  Identities=15%  Similarity=0.326  Sum_probs=22.4

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             9999999828576899599999249------9899999997699889987989899
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI  111 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~  111 (123)
                      |++++++|.+   .++|++++|.++      .+.....+.+.|+++.+.--+.+++
T Consensus        80 ~~~v~~~r~~---~~~PivlMtY~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE  132 (263)
T CHL00200         80 LSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE  132 (263)
T ss_pred             HHHHHHHHHC---CCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf             9999998606---7998899862068887388999999998499868747999788


No 333
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP.  Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.80  E-value=33  Score=16.20  Aligned_cols=75  Identities=13%  Similarity=0.150  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCC
Q ss_conf             989999999999978989------999889799---999998279989999504129695---99999998285768995
Q gi|254780476|r   11 NELNMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIP   78 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ip   78 (123)
                      ++..++.+.+.|+..|..      +..-+-|+.   |+..+-...|+++++|=-....|-   .++.+.+++......+.
T Consensus       102 ~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL~~~P~ilLlDEPts~LD~~~~~~l~~~l~~l~~~~~~T  181 (211)
T cd03298         102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT  181 (211)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf             29999999999987699878728945589899999999999865999999718876559899999999999999974998


Q ss_pred             EEEEEEC
Q ss_conf             9999924
Q gi|254780476|r   79 VIAVTAF   85 (123)
Q Consensus        79 ii~~t~~   85 (123)
                      +|++|-.
T Consensus       182 vi~vTHd  188 (211)
T cd03298         182 VLMVTHQ  188 (211)
T ss_pred             EEEECCC
T ss_conf             9999889


No 334
>PRK13127 consensus
Probab=39.74  E-value=33  Score=16.19  Aligned_cols=112  Identities=9%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECCCCCHH---------HHHHHHHHCC
Q ss_conf             899539989999999999978989999--8-897999999982799899995041296959---------9999998285
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQ--T-RNGMEALELARQHKPDVIIMDIQLQEISGL---------EITKQIKEDS   72 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~--a-~~g~eal~~l~~~~~dlillD~~mp~~dG~---------el~~~ir~~~   72 (123)
                      ++++|=-....+-+...+...|+....  + .+..+=++.+.+....+|-+ +...+.+|.         +.++++|+  
T Consensus       119 lIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFiY~-vs~~GvTG~~~~~~~~~~~~i~~ik~--  195 (262)
T PRK13127        119 LIIPDLPVEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFVYL-VSRLGVTGAREDVEEATFDLLKRART--  195 (262)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE-EECCCCCCCCCCCHHHHHHHHHHHHH--
T ss_conf             996699978999999999855832799858999899999998438981899-84355568765552889999999996--


Q ss_pred             CCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE---------CCCCHHHHHHHHHHHH
Q ss_conf             76899599999249989999999769988998---------7989899999999974
Q gi|254780476|r   73 ELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS---------KPISLSIFMETIKKYI  120 (123)
Q Consensus        73 ~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~---------KPi~~~~L~~~i~~~l  120 (123)
                       ..++|+.+=-|-..+++..+..+.|+++.+.         +..+.+++.+.+.++.
T Consensus       196 -~t~~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSaiv~~i~~~~~~~~~~~~v~~~~  251 (262)
T PRK13127        196 -TCKNKIAVGFGISKGEHAEELLDAGADGVIVGSALVDIIAEGGDNEEVADRLEELA  251 (262)
T ss_pred             -CCCCCEEEEEEECCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             -17998489933488999999986499999987899999996699789999999999


No 335
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.50  E-value=33  Score=16.17  Aligned_cols=99  Identities=17%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH---H----------CCCCEEEEEEECC-----------
Q ss_conf             877899539989999999999978989999889799999998---2----------7998999950412-----------
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---Q----------HKPDVIIMDIQLQ-----------   57 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~---~----------~~~dlillD~~mp-----------   57 (123)
                      ||||||+===.+-+.. .++|...|..|....+..++++...   +          ...|+|+..=..|           
T Consensus         3 ~KkvlV~GlG~SG~s~-a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGi~~~~p~~~~a~~   81 (418)
T PRK00683          3 LQRVVVLGLGVTGKSV-ARFLAQKGVYVIGVDNSLEALQSCPYIHERYLEGAEEFPEQVDLVVRSPGIKPYHPWVEAAVA   81 (418)
T ss_pred             CCEEEEEEECHHHHHH-HHHHHHCCCEEEEECCCHHHHHHCCHHHHHCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             8669998088879999-999997829899982981454546145554056233242349899989985998899999998


Q ss_pred             ----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH-----HHHHCCCCEEEE
Q ss_conf             ----96959999999828576899599999249989999-----999769988998
Q gi|254780476|r   58 ----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE-----RIRKGGCEAYIS  104 (123)
Q Consensus        58 ----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~-----~~~~~g~~~~l~  104 (123)
                          -++.+|++-+   .....+.|+|.+||........     -....|...++.
T Consensus        82 ~~i~i~seiel~~~---~~~~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~  134 (418)
T PRK00683         82 LKIPVVTDIQLAFQ---TPEFQRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAM  134 (418)
T ss_pred             CCCCCCCHHHHHHH---HHHHCCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEE
T ss_conf             69975407999974---244147987999768986609999999998679981888


No 336
>cd01149 HutB Hemin binding protein HutB.  These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=39.34  E-value=34  Score=16.15  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=39.4

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             99998279989999504129695999999982857689959999924998-99999997699889987989899999999
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK-GDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~-~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      ++.+..-+||+|+....   ..+-+...++++    ..+|++.+.+.... +........|-  .+-|+=..+++.+.++
T Consensus        51 ~E~il~l~PDLVi~~~~---~~~~~~~~~L~~----~gi~v~~~~~~~~~~~~~~~i~~lg~--i~g~e~~A~~li~~~~  121 (235)
T cd01149          51 AEGVLSLKPTLVIASDE---AGPPEALDQLRA----AGVPVVTVPSTPTLDGLLTKIRQVAQ--ALGVPEKGEALAQEVR  121 (235)
T ss_pred             HHHHHHCCCCEEEEECC---CCHHHHHHHHHH----CCCCEEECCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf             99997379988998177---683999999996----29907955898887899999999745--0665689999999999


Q ss_pred             HHH
Q ss_conf             974
Q gi|254780476|r  118 KYI  120 (123)
Q Consensus       118 ~~l  120 (123)
                      +.+
T Consensus       122 ~~l  124 (235)
T cd01149         122 QRL  124 (235)
T ss_pred             HHH
T ss_conf             999


No 337
>PRK10436 hypothetical protein; Provisional
Probab=39.09  E-value=34  Score=16.13  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHCCCCEEEEE
Q ss_conf             7999999982799899995
Q gi|254780476|r   35 GMEALELARQHKPDVIIMD   53 (123)
Q Consensus        35 g~eal~~l~~~~~dlillD   53 (123)
                      -..+++.+-++.||+|++.
T Consensus       273 fa~~lrs~LRqDPDVImvG  291 (461)
T PRK10436        273 FQRVLRALLRQDPDVIMVG  291 (461)
T ss_pred             HHHHHHHHHCCCCCEEEEC
T ss_conf             9999999874699999865


No 338
>cd01140 FatB Siderophore binding protein FatB.  These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.05  E-value=34  Score=16.13  Aligned_cols=16  Identities=44%  Similarity=0.549  Sum_probs=10.7

Q ss_pred             HHHHHHCCCCEEEEEE
Q ss_conf             9999827998999950
Q gi|254780476|r   39 LELARQHKPDVIIMDI   54 (123)
Q Consensus        39 l~~l~~~~~dlillD~   54 (123)
                      ++.+..-+||+|+..-
T Consensus        65 ~E~I~~l~PDLIi~~~   80 (270)
T cd01140          65 LEAIAALKPDLIIIGG   80 (270)
T ss_pred             HHHHHHCCCCEEEECC
T ss_conf             9999713999999838


No 339
>PRK13137 consensus
Probab=39.02  E-value=34  Score=16.12  Aligned_cols=47  Identities=13%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             99999998285768995999992499------899999997699889987989899
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAM------KGDEERIRKGGCEAYISKPISLSI  111 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~------~~~~~~~~~~g~~~~l~KPi~~~~  111 (123)
                      |++++++|+.   .++|+|+++.++.      +....++.++|+++.+.--+.+++
T Consensus        89 l~~~~~~r~~---~~~PivlM~Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE  141 (266)
T PRK13137         89 LELVRELRAL---TDTPLVIMTYLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQ  141 (266)
T ss_pred             HHHHHHHCCC---CCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             9999975556---8987899934589987589999999997696099947999788


No 340
>cd01148 TroA_a Metal binding protein TroA_a.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=39.01  E-value=34  Score=16.12  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=26.0

Q ss_pred             HHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99998279989999504-12969599999998285768995999992
Q gi|254780476|r   39 LELARQHKPDVIIMDIQ-LQEISGLEITKQIKEDSELQEIPVIAVTA   84 (123)
Q Consensus        39 l~~l~~~~~dlillD~~-mp~~dG~el~~~ir~~~~~~~ipii~~t~   84 (123)
                      ++.+...+||+||.+.. +.+..+.....++++.    .+|++++..
T Consensus        72 ~E~il~l~PDlIi~~~~~~~~~~~~~~~~~l~~~----gipv~~~~~  114 (284)
T cd01148          72 KETVLAARPDLVFGGWSYGFDKGGLGTPDSLAEL----GIKTYILPE  114 (284)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHC----CCCEEEECC
T ss_conf             9999736998898345434453203339999865----996899244


No 341
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=38.83  E-value=34  Score=16.11  Aligned_cols=37  Identities=35%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             HHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE
Q ss_conf             99999999789899998897------99999998279989999
Q gi|254780476|r   16 KLFRDLIETSGYIALQTRNG------MEALELARQHKPDVIIM   52 (123)
Q Consensus        16 ~~l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlill   52 (123)
                      +.+.+.+...||.+..+.+.      .+.++.+.++.+|-+++
T Consensus        19 ~gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl   61 (259)
T cd01542          19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIIL   61 (259)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999986998999978999899999999999569998999


No 342
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.67  E-value=34  Score=16.09  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEE--------CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHCCCCEE
Q ss_conf             89799999998279989999504--------12969599999998285768995999992499-899999997699889
Q gi|254780476|r   33 RNGMEALELARQHKPDVIIMDIQ--------LQEISGLEITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAY  102 (123)
Q Consensus        33 ~~g~eal~~l~~~~~dlillD~~--------mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~-~~~~~~~~~~g~~~~  102 (123)
                      .+.++|.+...+...|++-.-+.        =|+. -|+.+++|++.   .++|+++.-+++. .++..++.+.|+.-+
T Consensus       155 T~peea~~Fv~~TgvD~LAvaiGn~HG~y~~~p~l-~~~~L~~I~~~---~~iPLVLHGgSG~~~e~i~~ai~~Gi~Kv  229 (286)
T PRK12738        155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKI-DFQRLAEIREV---VDVPLVLHGASDVPDEFVRRTIELGVTKV  229 (286)
T ss_pred             CCHHHHHHHHHHHCCCEEHHHHCCCCCCCCCCCCC-CHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHCCEEEE
T ss_conf             99999999999879781223323546777999947-89999999730---79998976999999999999997690699


No 343
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.63  E-value=34  Score=16.09  Aligned_cols=72  Identities=29%  Similarity=0.362  Sum_probs=38.7

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-------CCCC-CH--------HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCC
Q ss_conf             99999998279989999504-------1296-95--------99999998285768995999992499899999997699
Q gi|254780476|r   36 MEALELARQHKPDVIIMDIQ-------LQEI-SG--------LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC   99 (123)
Q Consensus        36 ~eal~~l~~~~~dlillD~~-------mp~~-dG--------~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~   99 (123)
                      .|.+++++++.|.+||+|--       +-.. +|        .||+.++-.=....++.|||-|....--|..-...-.+
T Consensus       234 RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~  313 (406)
T COG1222         234 RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRF  313 (406)
T ss_pred             HHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC
T ss_conf             99999874149849998311223111136888850999999999998605889788768998558855557665088754


Q ss_pred             CEEEECCC
Q ss_conf             88998798
Q gi|254780476|r  100 EAYISKPI  107 (123)
Q Consensus       100 ~~~l~KPi  107 (123)
                      +-.+-=|.
T Consensus       314 DRkIEfpl  321 (406)
T COG1222         314 DRKIEFPL  321 (406)
T ss_pred             CCEEECCC
T ss_conf             53011689


No 344
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.55  E-value=35  Score=16.08  Aligned_cols=60  Identities=22%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             HCCCEEEE-ECCHH-----HHHHHHHHCCCCEEEEEEECCCC-CH-------HHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             78989999-88979-----99999982799899995041296-95-------999999982857689959999924
Q gi|254780476|r   24 TSGYIALQ-TRNGM-----EALELARQHKPDVIIMDIQLQEI-SG-------LEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        24 ~~g~~v~~-a~~g~-----eal~~l~~~~~dlillD~~mp~~-dG-------~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      ..|+.+.- .-+|.     +.-+.+.+.+++++++|+.--.. ++       ..+++.||+  ..+++||++++..
T Consensus        29 ~lg~~viNlG~sG~g~le~~~a~~i~~~~a~~~vi~~g~N~~~~~~~~~~~~~~~V~~ir~--~~p~tPIvlv~~~  102 (177)
T cd01844          29 RLGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRE--THPDTPILLVSPR  102 (177)
T ss_pred             HCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECC
T ss_conf             5499777146675431028899998618998899963467887478999999999999998--7889978998336


No 345
>KOG0781 consensus
Probab=38.50  E-value=35  Score=16.07  Aligned_cols=62  Identities=16%  Similarity=0.162  Sum_probs=37.5

Q ss_pred             HCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             78989999889799999998279989999504129695999999982857689959999924
Q gi|254780476|r   24 TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        24 ~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      ..||.-..+.-+.+|++..+.+-||+|++|.-=---|--.|.+.+.........-.|++.+.
T Consensus       444 ekGYgkd~a~vak~AI~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgE  505 (587)
T KOG0781         444 EKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGE  505 (587)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHH
T ss_conf             61047782899999999998669878998354433478067899999974479865998505


No 346
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=38.39  E-value=35  Score=16.06  Aligned_cols=67  Identities=13%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             CCHHHHHHH---HHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             998999999---99999789899998897------999999982799899995041296959999999828576899599
Q gi|254780476|r   10 DNELNMKLF---RDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        10 D~~~~~~~l---~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +|+...+++   .+.++..||.+..+.++      .++++.+.++.+|-+++-.  .+.+--+..+.+++    +.+|+|
T Consensus        10 ~npf~~~~~~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~--~~~~~~~~~~~l~~----~~iPvV   83 (266)
T cd06282          10 ANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTV--ADAATSPALDLLDA----ERVPYV   83 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCHHHHHHHHH----CCCCEE
T ss_conf             688999999999999998799899997999979999999999965998799963--78775599999985----599789


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   81 AV   82 (123)
Q Consensus        81 ~~   82 (123)
                      ++
T Consensus        84 ~~   85 (266)
T cd06282          84 LA   85 (266)
T ss_pred             EE
T ss_conf             99


No 347
>TIGR02102 pullulan_Gpos pullulanase, extracellular; InterPro: IPR011838    Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterised members of this family include a surface-located pullulanase from Streptococcus pneumoniae  and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity ..
Probab=38.12  E-value=16  Score=18.06  Aligned_cols=47  Identities=19%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEE
Q ss_conf             987789953998999999999997898999-----9889799999998279989999
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIAL-----QTRNGMEALELARQHKPDVIIM   52 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~-----~a~~g~eal~~l~~~~~dlill   52 (123)
                      |+|||||     .-.+.+.+-++--||...     -|++-+.|++.+++=.|++|.+
T Consensus       637 MsrR~LV-----DSI~Ylv~efKvDGFRFDMMGDHDA~sI~~Ay~~Ak~iNPN~iMi  688 (1164)
T TIGR02102       637 MSRRVLV-----DSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI  688 (1164)
T ss_pred             HHHHHHH-----HHHHHHHHHEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             2000233-----334544300000541307876321899999999987318977996


No 348
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=38.09  E-value=35  Score=16.04  Aligned_cols=33  Identities=24%  Similarity=0.163  Sum_probs=12.0

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCC
Q ss_conf             9999998285768995999992499899999997699
Q gi|254780476|r   63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC   99 (123)
Q Consensus        63 el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~   99 (123)
                      ++++.+++    +.+++-++|+.............|.
T Consensus        89 e~L~~L~~----~g~~l~ivTn~~~~~~~~~l~~~gl  121 (214)
T PRK13288         89 ETLQTLKK----QGYKLGIVTTKARDTVEMGLKLTGL  121 (214)
T ss_pred             HHHHHHHH----CCCCEEEEECCCHHHHHHHHHHHCC
T ss_conf             99999997----7992677535756999999997222


No 349
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases.  wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=37.97  E-value=35  Score=16.03  Aligned_cols=53  Identities=11%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |+-+++..-     ..+|+|... ....   ......|.++|+.+|-+++.|.++|++.+..
T Consensus       274 Gi~~vEAma-----~G~PvIa~~-~gG~---~e~v~~g~tG~l~~~~~~~~la~ai~~~~~~  326 (351)
T cd03804         274 GIVPVEAMA-----SGTPVIAYG-KGGA---LETVIDGVTGILFEEQTVESLAAAVERFEKN  326 (351)
T ss_pred             CCHHHHHHH-----CCCCEEEEC-CCCC---CCEECCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             975999997-----699889828-9997---5501589978995989999999999999859


No 350
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=37.80  E-value=36  Score=16.01  Aligned_cols=95  Identities=22%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             78995399899999999999789899998-89799999998279989999504129695999999982857689959999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYIALQT-RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~v~~a-~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      ++.++|.|+...+..+    ..|+.+.-. .+-.+-++.+.-++-.++++-+.=|+ .-.++.+.+|+..  +++||++-
T Consensus       424 ~~vviD~d~~~V~~~r----~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~~-~~~~iv~~~r~~~--P~l~IiaR  496 (615)
T PRK03562        424 KMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ-TNLQLTELVKEHF--PHLQIIAR  496 (615)
T ss_pred             CEEEEECCHHHHHHHH----HCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH-HHHHHHHHHHHHC--CCCEEEEE
T ss_conf             8799979999999999----679908976899999998679140688999949899-9999999999758--99869998


Q ss_pred             EECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             9249989999999769988998798
Q gi|254780476|r   83 TAFAMKGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        83 t~~~~~~~~~~~~~~g~~~~l~KPi  107 (123)
                      +  ....+..+..+.|++..+.--+
T Consensus       497 a--rd~~~~~~L~~~Ga~~vv~Et~  519 (615)
T PRK03562        497 A--RDVDHYIRLRQAGVEKPERETF  519 (615)
T ss_pred             E--CCHHHHHHHHHCCCCEEECCHH
T ss_conf             3--9778899999789998966658


No 351
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=37.67  E-value=34  Score=16.10  Aligned_cols=100  Identities=16%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             EECCCHHHHHHHH------------HHHHHCCCEEE----E------ECCHHHHHHHHHHCCCCEEEEEEECCCCCH---
Q ss_conf             9539989999999------------99997898999----9------889799999998279989999504129695---
Q gi|254780476|r    7 IVEDNELNMKLFR------------DLIETSGYIAL----Q------TRNGMEALELARQHKPDVIIMDIQLQEISG---   61 (123)
Q Consensus         7 iVDD~~~~~~~l~------------~~l~~~g~~v~----~------a~~g~eal~~l~~~~~dlillD~~mp~~dG---   61 (123)
                      .|-||....+++.            .+|+..|..+.    .      ..--..|++++.+..||.++++.-||--.-   
T Consensus       118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~  197 (275)
T COG1856         118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMG  197 (275)
T ss_pred             ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCC
T ss_conf             12774899999768863777788999999709425305999731685233387889986079973999998138850105


Q ss_pred             -------HHHHHHHHH-CCCCCCCCEEEEEECCCHHHHH----HHHHCCCCEEEECCCC
Q ss_conf             -------999999982-8576899599999249989999----9997699889987989
Q gi|254780476|r   62 -------LEITKQIKE-DSELQEIPVIAVTAFAMKGDEE----RIRKGGCEAYISKPIS  108 (123)
Q Consensus        62 -------~el~~~ir~-~~~~~~ipii~~t~~~~~~~~~----~~~~~g~~~~l~KPi~  108 (123)
                             -|..+-++. ....++ |+++=-+...-..+.    .+..+|++ -+++|..
T Consensus       198 ~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~  254 (275)
T COG1856         198 NSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPR  254 (275)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCC-EEECCCC
T ss_conf             77976989999999999985899-746741476753678788888871885-0445985


No 352
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.60  E-value=36  Score=15.99  Aligned_cols=80  Identities=24%  Similarity=0.346  Sum_probs=53.5

Q ss_pred             CEEEEECCCHHHHHHH--HHHHH--HCCCEEEEECCHHHHHHHHHHCCCCEEEEEE----ECCCCC---H-----HHHHH
Q ss_conf             7789953998999999--99999--7898999988979999999827998999950----412969---5-----99999
Q gi|254780476|r    3 KKVMIVEDNELNMKLF--RDLIE--TSGYIALQTRNGMEALELARQHKPDVIIMDI----QLQEIS---G-----LEITK   66 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l--~~~l~--~~g~~v~~a~~g~eal~~l~~~~~dlillD~----~mp~~d---G-----~el~~   66 (123)
                      +|+|.|--++...++=  .+-|.  ..+..+....+-++-++.+.+.+|+++++|-    ..|+++   |     -|.+.
T Consensus       121 ~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~  200 (456)
T COG1066         121 GKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAA  200 (456)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHH
T ss_conf             95799967767899999999828996455774112899999999854997899965412302633579985899999999


Q ss_pred             HHHHCCCCCCCCEEEE
Q ss_conf             9982857689959999
Q gi|254780476|r   67 QIKEDSELQEIPVIAV   82 (123)
Q Consensus        67 ~ir~~~~~~~ipii~~   82 (123)
                      .+.+....++++++++
T Consensus       201 ~L~~~AK~~~i~~fiV  216 (456)
T COG1066         201 ELMRLAKTKNIAIFIV  216 (456)
T ss_pred             HHHHHHHHCCCEEEEE
T ss_conf             9999998759739999


No 353
>PRK07589 ornithine cyclodeaminase; Validated
Probab=37.60  E-value=36  Score=15.99  Aligned_cols=38  Identities=13%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf             77899539989999999999978989999889799999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE   40 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~   40 (123)
                      ++|.+.+=|+...+.+.+-++..|+.+..+.|.++|.+
T Consensus       155 ~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~s~~eAv~  192 (346)
T PRK07589        155 EEIRLYDIDPAATAKLARNLAGPGLRIVRCRSVAEAVE  192 (346)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf             68999828879999999998726980899499999972


No 354
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.52  E-value=36  Score=15.98  Aligned_cols=38  Identities=16%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf             987789953998999999999997898999988979999
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL   39 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal   39 (123)
                      |.|||||..--+..+++++. ++.+|+......+..++.
T Consensus         1 M~~kvLIANRGEIA~RiiRt-~~elgi~tVavys~~D~~   38 (449)
T PRK08591          1 MFDKILIANRGEIALRILRA-CKELGIKTVAVHSTADRD   38 (449)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCCEEEECCHHHCC
T ss_conf             96448896784999999999-998499499986857527


No 355
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases.  ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=37.40  E-value=36  Score=15.97  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=26.9

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             89959999924998999999976998899879898999999999740
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ..+|||.. ....   ..+....|.++||..| +.++|.+++.+.+.
T Consensus       322 ~G~PVVas-d~gG---~~E~I~~g~~G~Lv~~-d~~~la~~i~~ll~  363 (392)
T cd03805         322 AGKPVIAC-NSGG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAN  363 (392)
T ss_pred             CCCCEEEE-CCCC---CHHHEECCCEEEEECC-CHHHHHHHHHHHHC
T ss_conf             79999994-8998---6766457966999595-99999999999978


No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.33  E-value=36  Score=15.97  Aligned_cols=102  Identities=15%  Similarity=0.098  Sum_probs=64.1

Q ss_pred             EE-EEECCC--HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEE-CCCCCHHH---HHHHHHHCCCCC
Q ss_conf             78-995399--899999999999789899998897999999982-79989999504-12969599---999998285768
Q gi|254780476|r    4 KV-MIVEDN--ELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQ-LQEISGLE---ITKQIKEDSELQ   75 (123)
Q Consensus         4 ki-LiVDD~--~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~-mp~~dG~e---l~~~ir~~~~~~   75 (123)
                      || ||-=|+  .-..+.++.+-.-.|.-+.++.+..+--+.+.+ ...|+||+|.- +...|...   +-..++..+  .
T Consensus       242 kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~--~  319 (412)
T PRK05703        242 KVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDLILIDTAGRSQRDPRLISELKALIENSK--P  319 (412)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC--C
T ss_conf             17999837677779999999999719737984799999999987158997999689889789999999999986248--8


Q ss_pred             CCCEEEEEECCCHHHHHHHH----HCCCCEEEECCC
Q ss_conf             99599999249989999999----769988998798
Q gi|254780476|r   76 EIPVIAVTAFAMKGDEERIR----KGGCEAYISKPI  107 (123)
Q Consensus        76 ~ipii~~t~~~~~~~~~~~~----~~g~~~~l~KPi  107 (123)
                      .-..+++|+.....+.....    ..|+++++.-=+
T Consensus       320 ~~~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~TKl  355 (412)
T PRK05703        320 IDVYLVLSATTKYRDLKDIVKHFSRLPLDGLILTKL  355 (412)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             718999759899899999999846799987999711


No 357
>cd01147 HemV-2 Metal binding protein HemV-2.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.03  E-value=37  Score=15.94  Aligned_cols=74  Identities=23%  Similarity=0.259  Sum_probs=37.0

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH-HHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             99998279989999504129695999999982857689959999924998999-99997699889987989899999999
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~-~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      ++.+..-.||+|+.......   ......+.+.   ..+|++.+.....-++. ......|  ..+-|+=+.+++.+.++
T Consensus        67 ~E~i~al~PDlVi~~~~~~~---~~~~~~~~~~---~gip~v~~~~~~~~~~~~~~i~~lg--~i~g~e~~A~~l~~~~~  138 (262)
T cd01147          67 YEKIAALKPDVVIDVGSDDP---TSIADDLQKK---TGIPVVVLDGGDSLEDTPEQIRLLG--KVLGKEERAEELISFIE  138 (262)
T ss_pred             HHHHHCCCCCEEEEECCCCC---HHHHHHHHHH---HCCCEEECCCCCCHHHHHHHHHHHH--HHHCCHHHHHHHHHHHH
T ss_conf             99996069988998467770---6789999998---7997897489999999999999999--99696478999999999


Q ss_pred             HHH
Q ss_conf             974
Q gi|254780476|r  118 KYI  120 (123)
Q Consensus       118 ~~l  120 (123)
                      +.+
T Consensus       139 ~~~  141 (262)
T cd01147         139 SIL  141 (262)
T ss_pred             HHH
T ss_conf             999


No 358
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=36.89  E-value=37  Score=15.93  Aligned_cols=88  Identities=9%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CEEE-EECCCHH---HHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             7789-9539989---999999999978989999-------8897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVM-IVEDNEL---NMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiL-iVDD~~~---~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      |||- +.+|++.   ..+.++..++..|.++..       ..+-...+..++...||+|++-.  ..-++..+++++|+.
T Consensus       137 kkvavl~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~--~~~~~~~~~~q~~~~  214 (336)
T cd06326         137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVG--AYKAAAAFIRALRKA  214 (336)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf             759999358758899999999999977993799998689987779999999847979999927--827999999999976


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             57689959999924998999999
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      .  -+.|++..+...........
T Consensus       215 G--~~~~~~~~~~~~~~~~~~~~  235 (336)
T cd06326         215 G--GGAQFYNLSFVGADALARLL  235 (336)
T ss_pred             C--CCCEEEEECCCCHHHHHHHH
T ss_conf             9--99759985677739999976


No 359
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=36.78  E-value=37  Score=15.92  Aligned_cols=57  Identities=19%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf             8995399899999999999789899998-------897999999982799899995041296959
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGL   62 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~   62 (123)
                      |||.=.+-..-..+++.|. -++++...       .+.....+.+++.+||+|+=---+...|+.
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~a   66 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKA   66 (281)
T ss_pred             EEEECCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             8997698767999999717-784399515765555685899999986199989987320365413


No 360
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.75  E-value=37  Score=15.91  Aligned_cols=94  Identities=6%  Similarity=0.013  Sum_probs=54.2

Q ss_pred             EEEEECCCHHHHHHHHHHH----HHCC-CE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             7899539989999999999----9789-89-9998897999999982799899995041296959999999828576899
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLI----ETSG-YI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l----~~~g-~~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
                      .|||=|+.-....-+...+    +..+ .. ..++.|-+++.+.+.. .+|.|++|=.-|+ +=-+..+.++..   ..-
T Consensus       171 ~iLIKdNHi~~~g~i~~ai~~~r~~~~~~kIeVEv~sl~q~~ea~~~-gaDiImLDNms~e-~~~~av~~~~~~---~~~  245 (288)
T PRK07896        171 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE-GAELILLDNFPVW-QTQEAVQRRDAR---APT  245 (288)
T ss_pred             EEEEEHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-CCCEEEECCCCHH-HHHHHHHHHHCC---CCC
T ss_conf             28986214653086999999999858996199997979999998746-9999997799999-999999998376---987


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             5999992499899999997699889
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +.+-.||.-..+...+..+.|++.+
T Consensus       246 v~lEaSGgI~~~ni~~yA~tGVD~I  270 (288)
T PRK07896        246 VLLESSGGLTLDTAAAYAATGVDYL  270 (288)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf             4899988999999999996599999


No 361
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764    Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.  AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=36.75  E-value=37  Score=15.91  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             CCEEEEECCCHHH---HHHHHHHHHHCCCEEEEECC
Q ss_conf             8778995399899---99999999978989999889
Q gi|254780476|r    2 LKKVMIVEDNELN---MKLFRDLIETSGYIALQTRN   34 (123)
Q Consensus         2 ~kkiLiVDD~~~~---~~~l~~~l~~~g~~v~~a~~   34 (123)
                      .+|||||||=-.+   .+...++++..|-+|..+..
T Consensus       114 g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aF  149 (175)
T TIGR01090       114 GQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAF  149 (175)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             890899832201267899999999985961687455


No 362
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=36.67  E-value=37  Score=15.90  Aligned_cols=69  Identities=16%  Similarity=0.291  Sum_probs=38.5

Q ss_pred             CHHHHHH---HHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEE---ECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9899999---999999789899998897------9999999827998999950---412969599999998285768995
Q gi|254780476|r   11 NELNMKL---FRDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDI---QLQEISGLEITKQIKEDSELQEIP   78 (123)
Q Consensus        11 ~~~~~~~---l~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~---~mp~~dG~el~~~ir~~~~~~~ip   78 (123)
                      |+...++   +.+.+...||.+..+.++      .++++.+.+..+|-+++.-   ..+.. ..+.++++++    .++|
T Consensus        11 n~ff~~~~~gi~~~~~~~gy~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~-~~~~~~~l~~----~~iP   85 (273)
T cd01541          11 DYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNP-NIDLYLKLEK----LGIP   85 (273)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHH----CCCC
T ss_conf             5799999999999999869989999789998999999999996599989992531035787-7799999997----6998


Q ss_pred             EEEEEE
Q ss_conf             999992
Q gi|254780476|r   79 VIAVTA   84 (123)
Q Consensus        79 ii~~t~   84 (123)
                      +|++..
T Consensus        86 vV~i~~   91 (273)
T cd01541          86 YVFINA   91 (273)
T ss_pred             EEEEEC
T ss_conf             999956


No 363
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.49  E-value=37  Score=15.89  Aligned_cols=67  Identities=16%  Similarity=0.344  Sum_probs=34.8

Q ss_pred             CCHHHHHHH---HHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             998999999---999997898999988979------99999982799899995041296959999999828576899599
Q gi|254780476|r   10 DNELNMKLF---RDLIETSGYIALQTRNGM------EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        10 D~~~~~~~l---~~~l~~~g~~v~~a~~g~------eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +|+...+++   .+.+...||.+..+.+..      +.++.+.+..+|-|++-.  +..+. ...+.+++    .++|+|
T Consensus        10 ~npf~~~l~~gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~--~~~~~-~~~~~l~~----~~iPvV   82 (270)
T cd06296          10 DSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVT--PELTS-AQRAALRR----TGIPFV   82 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCH-HHHHHHHH----CCCCEE
T ss_conf             539999999999999998499899997999969999999999954999999906--88999-99999997----499999


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780476|r   81 AVT   83 (123)
Q Consensus        81 ~~t   83 (123)
                      ++.
T Consensus        83 ~id   85 (270)
T cd06296          83 VVD   85 (270)
T ss_pred             EEC
T ss_conf             987


No 364
>PRK06101 short chain dehydrogenase; Provisional
Probab=36.46  E-value=37  Score=15.88  Aligned_cols=57  Identities=9%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             877899539989999999999978989999889799999998279989999504129
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE   58 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~   58 (123)
                      ||+|||.=-..-.=+.+...|...|+.|..+.--++.++.+.++..++..+.....+
T Consensus         1 MktvlITGassGIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd   57 (241)
T PRK06101          1 MTSVLITGATSGIGKQLALDYAKAGWKVIACGRNEAVLDELHDQSSNIFTLAFDVTD   57 (241)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             998999224049999999999987998999989999999999732880489852267


No 365
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.42  E-value=37  Score=15.88  Aligned_cols=54  Identities=15%  Similarity=0.254  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |.-+++..-     ..+|||.-...+.   .+.....|.++|+.+|-+.+.|.+.|.+.+.+
T Consensus       279 g~~~lEAma-----~G~PVVat~~gg~---~~~i~~~~~~G~l~~~~d~~~l~~~i~~ll~~  332 (357)
T cd03795         279 GIVLLEAMA-----FGKPVISTEIGTG---GSYVNLHGVTGLVVPPGDPAALAEAIRRLLED  332 (357)
T ss_pred             CHHHHHHHH-----CCCCEEEECCCCC---HHHHEECCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             667999998-----7998999359998---15605569579997899999999999999779


No 366
>PRK13173 consensus
Probab=36.41  E-value=37  Score=15.88  Aligned_cols=51  Identities=12%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf             8778995399899999999999789899998897999999982799899995041296959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL   62 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~   62 (123)
                      |+||.|+|=-.-+..-+...|+..|+++....+..+-      ..+|.++    +|+..-|
T Consensus         1 M~kI~IiDyg~gNi~Sv~~al~~lg~~~~i~~~~~~i------~~~d~lI----LPGVGsF   51 (211)
T PRK13173          1 MTKIALLDYGMGNLHSASKALSAVGAEVSITNDPKVI------AAADKIV----FPGVGAM   51 (211)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHH------HHCCEEE----ECCCCCH
T ss_conf             9879999689449999999999869988996799998------4389689----7577868


No 367
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer,  which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=36.34  E-value=38  Score=15.87  Aligned_cols=52  Identities=17%  Similarity=0.110  Sum_probs=32.7

Q ss_pred             HHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             999827998999950412-----9695999999982857689959999924998999999
Q gi|254780476|r   40 ELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        40 ~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      +.+.+..+|+++||=-+.     -++--++.+-|++.|...+   +++|+...+......
T Consensus        89 ~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~e---vVlTGr~~p~~L~e~  145 (159)
T cd00561          89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLE---LVLTGRNAPKELIEA  145 (159)
T ss_pred             HHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf             998688989997366899998599179999999984899978---999699999999985


No 368
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=36.27  E-value=38  Score=15.87  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHH----HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf             9877899539989999999999978989999-88979----999999827998999950412969599999998285768
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGM----EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQ   75 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~----eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~   75 (123)
                      |+.+|.++=|..+..     .|.-.|+.... +++++    ++++.+.+..+++|++.-.+-    -.+-+.+|+....+
T Consensus         1 ~~~~I~VIGd~dtv~-----GFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~IIiite~~a----~~i~~~i~~~~~~~   71 (104)
T COG1436           1 MMMKIAVIGDRDTVT-----GFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDLA----EKIREEIRRIIRSS   71 (104)
T ss_pred             CCEEEEEEECCCHHH-----CEEEECCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEHHHH----HHHHHHHHHHHHCC
T ss_conf             951899997601302-----046604236798458057899999861348812999827887----65689999876416


Q ss_pred             CCCEEEEEEC
Q ss_conf             9959999924
Q gi|254780476|r   76 EIPVIAVTAF   85 (123)
Q Consensus        76 ~ipii~~t~~   85 (123)
                      ..|.++.-.+
T Consensus        72 ~~P~iv~IPs   81 (104)
T COG1436          72 VLPAIVEIPS   81 (104)
T ss_pred             CCCEEEEECC
T ss_conf             8657999379


No 369
>PRK06904 replicative DNA helicase; Validated
Probab=36.00  E-value=38  Score=15.84  Aligned_cols=43  Identities=21%  Similarity=0.454  Sum_probs=27.7

Q ss_pred             HHC-CCCEEEEEEE--CC--CCCH------HHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             827-9989999504--12--9695------999999982857689959999924
Q gi|254780476|r   43 RQH-KPDVIIMDIQ--LQ--EISG------LEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        43 ~~~-~~dlillD~~--mp--~~dG------~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      +++ ..++|++|+-  |+  +..+      -++.+.+|....--++|||+++=-
T Consensus       330 ~~~~~l~~vvIDYLqL~~~~~~~~~r~~ei~~isr~LK~lAkel~ipvi~LsQL  383 (472)
T PRK06904        330 RENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALSQL  383 (472)
T ss_pred             HHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             873899789963886604888777788999999999999999979988997326


No 370
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=35.94  E-value=38  Score=15.84  Aligned_cols=61  Identities=21%  Similarity=0.299  Sum_probs=39.0

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHH-HHHHHHCCCCCCCCEE-EEEECCCHHHHHHHHHCCCCEEEEC
Q ss_conf             99998279989999504129695999-9999828576899599-9992499899999997699889987
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEI-TKQIKEDSELQEIPVI-AVTAFAMKGDEERIRKGGCEAYISK  105 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el-~~~ir~~~~~~~ipii-~~t~~~~~~~~~~~~~~g~~~~l~K  105 (123)
                      .+++++++||+|+.=.-+|-    .+ +..+|+.....++|++ ++|.+..  ........+++.|+.-
T Consensus        82 ~~~i~~~~PD~IV~Thp~~~----~~~l~~lk~~~~~~~~p~~tViTD~~~--~H~~W~~~~~D~y~Va  144 (169)
T pfam06925        82 AALLKEFQPDIIISTHPLPA----AVPLSVLKSKGLLKRVLVVTVVTDFRT--CHPFWLHPEIDRYYVP  144 (169)
T ss_pred             HHHHHHHCCCEEEECCHHHH----HHHHHHHHHCCCCCCCCEEEEECCCCC--CCCCCCCCCCCEEEEC
T ss_conf             99999849399999976266----789999998387889978999898866--6578168999989979


No 371
>PRK07579 hypothetical protein; Provisional
Probab=35.93  E-value=38  Score=15.84  Aligned_cols=27  Identities=30%  Similarity=0.576  Sum_probs=23.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCE
Q ss_conf             877899539989999999999978989
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYI   28 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~   28 (123)
                      |+|||++-||....+.++.+..+-+..
T Consensus         1 ~~kil~~~dn~~~~~~~~~l~~~~~~~   27 (245)
T PRK07579          1 MKKILVVTDNRTILSDFKNLIGSKNDV   27 (245)
T ss_pred             CCEEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf             954999953588999999985799864


No 372
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.67  E-value=38  Score=15.81  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             CCEEEEEC-C-CH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             87789953-9-98---99999999999789899998-------8979999999827998999950412969599999998
Q gi|254780476|r    2 LKKVMIVE-D-NE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK   69 (123)
Q Consensus         2 ~kkiLiVD-D-~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir   69 (123)
                      .||+-++- + +.   ...+.++..++..|.++...       .+-...+..++...||+|++-..  ..++..++++.|
T Consensus       135 ~~~vai~~~~~~~y~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~i~~i~~~~pD~v~~~~~--~~~~~~~~~q~~  212 (334)
T cd06347         135 AKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGY--YTEVGLIAKQAR  212 (334)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHH
T ss_conf             878999984696687999999999999759748999715888887699999998659999999366--167999999999


Q ss_pred             HCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHH
Q ss_conf             285768995999992499899999997699889987989-------8999999999740
Q gi|254780476|r   70 EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS-------LSIFMETIKKYIG  121 (123)
Q Consensus        70 ~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~-------~~~L~~~i~~~l~  121 (123)
                      +..  -+.|++..++...+......-+..-.-+..-|+.       ...|.+..++..+
T Consensus       213 ~~G--~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~f~~~~~~~~g  269 (334)
T cd06347         213 ELG--IKVPILGGDGWDSPKLEEAGGAAAEGVYFTTHFSADDPTPKAKKFVKAYKAKYG  269 (334)
T ss_pred             HCC--CCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             769--977699744668766776507875887999527866774668999999999978


No 373
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=35.60  E-value=39  Score=15.80  Aligned_cols=79  Identities=18%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             CEE-EEECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             778-9953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r    3 KKV-MIVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kki-LiVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      ||+ +|..|..   ...+.++..++..|.++...       .+-...+..++...||+|++-  +.+-++..+.++.++.
T Consensus       134 kkv~~i~~dy~~g~~~~~~~~~~~~~~G~eVv~e~~~p~g~~Dfs~~l~kI~~a~pD~V~~~--~~g~~~~~f~rq~~~~  211 (374)
T TIGR03669       134 KKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSM--LVGANHASFYEQAASA  211 (374)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHC
T ss_conf             94899963664147899999999986698899999668999668999999986799999990--5587479999999974


Q ss_pred             CCCCCCCEEEEEEC
Q ss_conf             57689959999924
Q gi|254780476|r   72 SELQEIPVIAVTAF   85 (123)
Q Consensus        72 ~~~~~ipii~~t~~   85 (123)
                      .  -++|+...++.
T Consensus       212 G--l~~p~~~~~~~  223 (374)
T TIGR03669       212 N--LNLPMGTSTAM  223 (374)
T ss_pred             C--CCCCCCCEEEE
T ss_conf             9--99863220232


No 374
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=35.41  E-value=39  Score=15.79  Aligned_cols=80  Identities=20%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             778995-3998---9999999999978989999-------8897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVMIV-EDNE---LNMKLFRDLIETSGYIALQ-------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiLiV-DD~~---~~~~~l~~~l~~~g~~v~~-------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      ||+-++ +|++   ...+.++..++..|.++..       ..+-..-+..++...||+|++-  ....++..++++.|+.
T Consensus       142 k~vaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pd~i~~~--~~~~~~~~~~~q~~~~  219 (345)
T cd06338         142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVA--GHFPDAVLLVRQMKEL  219 (345)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHC
T ss_conf             68999964863036899999999986597499999717987658999999986799999990--7771599999999976


Q ss_pred             CCCCCCCEEEEEECC
Q ss_conf             576899599999249
Q gi|254780476|r   72 SELQEIPVIAVTAFA   86 (123)
Q Consensus        72 ~~~~~ipii~~t~~~   86 (123)
                      .-  ..|++..+...
T Consensus       220 G~--~~~~~~~~~~~  232 (345)
T cd06338         220 GY--NPKALYMTVGP  232 (345)
T ss_pred             CC--CCCEEEEECCC
T ss_conf             99--98889984466


No 375
>LOAD_USPA consensus
Probab=34.77  E-value=40  Score=15.73  Aligned_cols=18  Identities=22%  Similarity=0.396  Sum_probs=7.8

Q ss_pred             CEEEE-ECCCHHHHHHHHH
Q ss_conf             77899-5399899999999
Q gi|254780476|r    3 KKVMI-VEDNELNMKLFRD   20 (123)
Q Consensus         3 kkiLi-VDD~~~~~~~l~~   20 (123)
                      ||||+ +|.++.....++.
T Consensus         1 k~Ilv~vd~s~~s~~a~~~   19 (135)
T LOAD_USPA         1 KKILVAIDGSPESEKALRW   19 (135)
T ss_pred             CEEEEEECCCHHHHHHHHH
T ss_conf             9899998699899999999


No 376
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.66  E-value=40  Score=15.72  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=75.9

Q ss_pred             CCCEEEEECCCHH------HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC--------------------EEEEEE
Q ss_conf             9877899539989------99999999997898999988979999999827998--------------------999950
Q gi|254780476|r    1 MLKKVMIVEDNEL------NMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--------------------VIIMDI   54 (123)
Q Consensus         1 m~kkiLiVDD~~~------~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~d--------------------lillD~   54 (123)
                      |+-|+|++=..|.      ..-.++.-|+..||.|..+++. .|+++++--.||                    .+++--
T Consensus         1 mtgkvlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate-Aa~kLlevaD~ek~Y~de~vdlek~~ed~ie~~~~la~   79 (148)
T COG4081           1 MTGKVLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE-AALKLLEVADPEKYYVDETVDLEKYLEDPIEGGILLAA   79 (148)
T ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECCH-HHHEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHEEEE
T ss_conf             97428998059999852047898887763058517996287-66210554276640544101187752225743203777


Q ss_pred             ECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHHCC
Q ss_conf             41296959999999828576899599999249989999999769988998798-9899999999974039
Q gi|254780476|r   55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGEA  123 (123)
Q Consensus        55 ~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~~~l~~a  123 (123)
                      -+++-.|...+-.++...+.....|| + +..-++..+++....+.-+..+-+ +|..+..+|.++|+.+
T Consensus        80 FvhNDag~~yavT~ka~sn~~~~aiV-f-gr~~~d~leet~~lda~v~~ar~~HnP~rlvnrid~il~~~  147 (148)
T COG4081          80 FVHNDAGLQYAVTLKAVSNPDTYAIV-F-GREAEDRLEETGFLDAEVIGARAKHNPKRLVNRIDDILEAS  147 (148)
T ss_pred             EECCCCCHHHHHHHHHHCCCCCEEEE-E-CCHHHHHHHHHHCCCCCEEEEHHCCCCHHHHHHHHHHHHCC
T ss_conf             85387423122215654388646654-1-53667899987237650365310158388999999997325


No 377
>PRK06321 replicative DNA helicase; Provisional
Probab=34.53  E-value=40  Score=15.70  Aligned_cols=66  Identities=14%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             HHHHHCCCEEEEECC--HHH----HHHHHHHCCCCEEEEEEE--CCCC----CH------H-HHHHHHHHCCCCCCCCEE
Q ss_conf             999978989999889--799----999998279989999504--1296----95------9-999999828576899599
Q gi|254780476|r   20 DLIETSGYIALQTRN--GME----ALELARQHKPDVIIMDIQ--LQEI----SG------L-EITKQIKEDSELQEIPVI   80 (123)
Q Consensus        20 ~~l~~~g~~v~~a~~--g~e----al~~l~~~~~dlillD~~--mp~~----dG------~-el~~~ir~~~~~~~ipii   80 (123)
                      .-+..+.+.+....+  -.+    +..+-+.+..++|++|+-  |...    ++      + ++.+.+|....--++|||
T Consensus       304 ~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vvIDYlqL~~~~~~~~~~~~r~~~i~~isr~lK~lAkel~vpvi  383 (472)
T PRK06321        304 NEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGTLRNSESRQTEISEISRMLKNLARELNIPIL  383 (472)
T ss_pred             HHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             99854875786799998999999999998738998799972774167777777888999999999999999999799799


Q ss_pred             EEEEC
Q ss_conf             99924
Q gi|254780476|r   81 AVTAF   85 (123)
Q Consensus        81 ~~t~~   85 (123)
                      +++=-
T Consensus       384 ~LsQL  388 (472)
T PRK06321        384 CLSQL  388 (472)
T ss_pred             EECCC
T ss_conf             97226


No 378
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=34.53  E-value=40  Score=15.70  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             EEEEECCCHHHHH----HHHHHHHHCC--CE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf             7899539989999----9999999789--89-999889799999998279989999504129695999999982857689
Q gi|254780476|r    4 KVMIVEDNELNMK----LFRDLIETSG--YI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE   76 (123)
Q Consensus         4 kiLiVDD~~~~~~----~l~~~l~~~g--~~-v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~   76 (123)
                      .|||=|+.-....    .++..=+..+  .. ..++.|-+|+.+.+... +|.|++|=    |+=-++-+.++......+
T Consensus       153 ~iLikdNHi~~~g~~~~av~~~r~~~~~~~kIeVEv~tl~ea~~a~~~g-~D~I~LDn----~~~~~~~~~v~~~~~~~~  227 (269)
T cd01568         153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAG-ADIIMLDN----MSPEELKEAVKLLKGLPR  227 (269)
T ss_pred             EEEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC-CCEEEECC----CCHHHHHHHHHHHCCCCC
T ss_conf             2898050686738999999999986899843999949899999999769-99999879----899999999998477998


Q ss_pred             CCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             959999924998999999976998899
Q gi|254780476|r   77 IPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        77 ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                       ..+-.||.-..+...+..+.|++.+-
T Consensus       228 -v~ieaSGgI~~~ni~~ya~~GvD~Is  253 (269)
T cd01568         228 -VLLEASGGITLENIRAYAETGVDVIS  253 (269)
T ss_pred             -EEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             -59999899999999999975999999


No 379
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=34.27  E-value=38  Score=15.82  Aligned_cols=60  Identities=18%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf             99999999978989999889799999998279989999504129695999999982857689959999924998
Q gi|254780476|r   15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK   88 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~   88 (123)
                      ..-+++.|+..||+|..-.+..++      ..+|++++--.=.++=|++       + .....|||=-+|..-+
T Consensus        10 Ls~v~e~L~~~Gy~Vv~l~~~~~~------~~~da~VitG~d~N~mGi~-------d-~~t~~pVI~A~G~Tae   69 (80)
T pfam03698        10 LSNIEEALKEKGYEVVRLKNEQDA------QGCDACVVTGLDSNMMGIE-------D-TVTKAPVIDASGLTAE   69 (80)
T ss_pred             CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCCCC-------C-CCCCCCEEECCCCCHH
T ss_conf             259999999779878867870325------6658899958986521441-------3-3456874866899999


No 380
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=34.18  E-value=41  Score=15.67  Aligned_cols=86  Identities=22%  Similarity=0.404  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHCCCEEEEECC---HHHHHHHHHHCCCCEEEEEEECCC-CCH-HHHHHHHHHCCCCCCCCEEEE-EECCCH
Q ss_conf             99999999978989999889---799999998279989999504129-695-999999982857689959999-924998
Q gi|254780476|r   15 MKLFRDLIETSGYIALQTRN---GMEALELARQHKPDVIIMDIQLQE-ISG-LEITKQIKEDSELQEIPVIAV-TAFAMK   88 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~~a~~---g~eal~~l~~~~~dlillD~~mp~-~dG-~el~~~ir~~~~~~~ipii~~-t~~~~~   88 (123)
                      -.++..+|+..||++.--.+   .++..+.+++++||+|-+.-.|-. |-| -++..++++. ..++ |++.+ -+..-.
T Consensus       121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~ee-GiRd-~v~v~vGGApvt  198 (227)
T COG5012         121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEE-GIRD-KVIVMVGGAPVT  198 (227)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHC-CCCC-CEEEEECCCCCC
T ss_conf             99999999837957874389998799999999728756640687788799799999999976-8854-748852686246


Q ss_pred             HHHHHHHHCCCCEEEE
Q ss_conf             9999999769988998
Q gi|254780476|r   89 GDEERIRKGGCEAYIS  104 (123)
Q Consensus        89 ~~~~~~~~~g~~~~l~  104 (123)
                      .+.  +-+.|++.|-.
T Consensus       199 q~~--a~~iGAD~~~~  212 (227)
T COG5012         199 QDW--ADKIGADAYAE  212 (227)
T ss_pred             HHH--HHHHCCCCCCC
T ss_conf             899--99718775676


No 381
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822    This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=33.82  E-value=41  Score=15.63  Aligned_cols=102  Identities=14%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHH------CCCE----EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             98999999999997------8989----9998897999999982799899995041296959999999828576899599
Q gi|254780476|r   11 NELNMKLFRDLIET------SGYI----ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        11 ~~~~~~~l~~~l~~------~g~~----v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +...|++++++|..      +|-.    -...++--+-++++..++  =||+.=-|-+==|+.|++.     .-+-+|||
T Consensus       302 e~~qR~Vl~~vl~~iD~YDLYGkvAyPK~H~~~dvP~lYRLAA~~r--GiFVNPALTEPFGLTLlEA-----AAcGLPiv  374 (445)
T TIGR02472       302 ESSQREVLTEVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARRR--GIFVNPALTEPFGLTLLEA-----AACGLPIV  374 (445)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC--CEEECCCCCCCCHHHHHHH-----HHCCCCEE
T ss_conf             1578999999987630002456402688888112326789998659--8676272125301689999-----97699721


Q ss_pred             EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             9992499899999997699889987989899999999974039
Q gi|254780476|r   81 AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA  123 (123)
Q Consensus        81 ~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~a  123 (123)
                      + |.-+.+.+...-.   -|+-|.=|.+.+.+-.++.+++.++
T Consensus       375 A-T~DGGP~dI~~~C---~NGLLvd~ld~e~i~~AL~~alsd~  413 (445)
T TIGR02472       375 A-TEDGGPRDIIANC---RNGLLVDVLDLEAIASALEQALSDS  413 (445)
T ss_pred             E-CCCCCCHHHHHHC---CCCCEECCCCHHHHHHHHHHHCCCH
T ss_conf             0-7864866888428---8875005789899999999733890


No 382
>pfam07537 CamS CamS sex pheromone cAM373 precursor. This family includes CamS, from which Staphylococcus aureus sex pheromone staph-cAM373 is processed.
Probab=33.79  E-value=37  Score=15.88  Aligned_cols=21  Identities=19%  Similarity=0.564  Sum_probs=17.7

Q ss_pred             HHHHHHHHHCCCCCCCCEEEE
Q ss_conf             999999982857689959999
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~   82 (123)
                      -+++++||+...++++||.+-
T Consensus       150 ~~il~rlR~~~~lk~vPI~ia  170 (318)
T pfam07537       150 QEVLNRIRQNDNLKNVPITFA  170 (318)
T ss_pred             HHHHHHHHHCCCCCCCCEEEE
T ss_conf             999999984168788897999


No 383
>PRK07004 replicative DNA helicase; Provisional
Probab=33.69  E-value=42  Score=15.62  Aligned_cols=68  Identities=28%  Similarity=0.351  Sum_probs=35.7

Q ss_pred             HHHHHHCCCEEEEEC--CHHHHHH---HH-HH-CCCCEEEEEEE--CCCCC-H-------HHHHHHHHHCCCCCCCCEEE
Q ss_conf             999997898999988--9799999---99-82-79989999504--12969-5-------99999998285768995999
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGMEALE---LA-RQ-HKPDVIIMDIQ--LQEIS-G-------LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~eal~---~l-~~-~~~dlillD~~--mp~~d-G-------~el~~~ir~~~~~~~ipii~   81 (123)
                      ...+..+.+.+....  +..+-..   .+ ++ +..++|++|+-  |+..+ |       -++.+.+|....--++|||+
T Consensus       290 ~~~l~~~~l~IdD~~~lt~~~ira~~Rr~~~~~g~l~lvviDYlqli~~~~~~~~r~~ei~~isr~lK~lAkel~ipvi~  369 (460)
T PRK07004        290 VQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA  369 (460)
T ss_pred             HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             99985597489689873078999999999974358889985077544788888889999999999999999996997899


Q ss_pred             EEECC
Q ss_conf             99249
Q gi|254780476|r   82 VTAFA   86 (123)
Q Consensus        82 ~t~~~   86 (123)
                      ++--+
T Consensus       370 lsQLn  374 (460)
T PRK07004        370 LSQLN  374 (460)
T ss_pred             ECCCC
T ss_conf             70468


No 384
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.65  E-value=42  Score=15.62  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=33.1

Q ss_pred             HHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             99999827998999950412-----9695999999982857689959999924998999999
Q gi|254780476|r   38 ALELARQHKPDVIIMDIQLQ-----EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        38 al~~l~~~~~dlillD~~mp-----~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      |.+.+.+..+|++++|=-..     -.+-=++.+-|++.|...+   +++|+..-+......
T Consensus       107 a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~e---vVLTGR~ap~eLie~  165 (178)
T PRK07414        107 TQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVD---VILTGPEMPESLLAI  165 (178)
T ss_pred             HHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf             99998688988899703689987699259999999981899988---999699999999998


No 385
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.64  E-value=42  Score=15.62  Aligned_cols=52  Identities=10%  Similarity=0.168  Sum_probs=32.2

Q ss_pred             HHHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             9998279989999504129-----695999999982857689959999924998999999
Q gi|254780476|r   40 ELARQHKPDVIIMDIQLQE-----ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        40 ~~l~~~~~dlillD~~mp~-----~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      +.+.+..+|+++||=-+.-     ++--++..-|++.|...+   +++|+..-+......
T Consensus       108 ~~l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~rp~~~e---vVLTGR~~p~~L~e~  164 (190)
T PRK05986        108 RMLADESYDLVVLDELTYALKYGYLDLEEVLEALNNRPGMQH---VVITGRGAPRELIEA  164 (190)
T ss_pred             HHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf             998588888895376799985599589999999982899876---999799999999986


No 386
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=33.28  E-value=42  Score=15.58  Aligned_cols=97  Identities=19%  Similarity=0.088  Sum_probs=55.9

Q ss_pred             EEEECCCHH----HHHHHHHHHHHC-CCEEEEEC--CHHHHHHHHHHCCCCEEEEEEECCCCC-------HHHHHHHHHH
Q ss_conf             899539989----999999999978-98999988--979999999827998999950412969-------5999999982
Q gi|254780476|r    5 VMIVEDNEL----NMKLFRDLIETS-GYIALQTR--NGMEALELARQHKPDVIIMDIQLQEIS-------GLEITKQIKE   70 (123)
Q Consensus         5 iLiVDD~~~----~~~~l~~~l~~~-g~~v~~a~--~g~eal~~l~~~~~dlillD~~mp~~d-------G~el~~~ir~   70 (123)
                      |.+.+..+.    ..+.++...+.+ +..+....  +....-..+.+.--|.+.++.....-.       .++++.++++
T Consensus        88 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (200)
T cd04722          88 VEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR  167 (200)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99789996543006899999998448964999689999999999998099799970874678887666116899999998


Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             8576899599999249989999999769988998
Q gi|254780476|r   71 DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        71 ~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                         ..++||++-.+.....+..++...|+++++.
T Consensus       168 ---~~~ipvi~~gGi~~~~~~~~~~~~gAdgv~v  198 (200)
T cd04722         168 ---GSKVPVIAGGGINDPEDAAEALALGADGVIV  198 (200)
T ss_pred             ---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             ---5799989975879999999999859988981


No 387
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=33.27  E-value=42  Score=15.58  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=58.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHH--HHHCCCCEEEEEEECCCCCH-HHHHHHHHHCCCCCC
Q ss_conf             877899539989999999999978989--9998897999999--98279989999504129695-999999982857689
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALEL--ARQHKPDVIIMDIQLQEISG-LEITKQIKEDSELQE   76 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~--l~~~~~dlillD~~mp~~dG-~el~~~ir~~~~~~~   76 (123)
                      .++|.=||-++...+..+...+..|..  ...+.+..+.+..  ...++||+|++|   |--.| -++++.|-+.   +.
T Consensus       316 ~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~vi~D---PPR~G~~~~i~~l~~~---~p  389 (440)
T PRK13168        316 AAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKVLLD---PPRAGAFEVMQALAKL---KP  389 (440)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEC---CCCCCHHHHHHHHHHC---CC
T ss_conf             67688760579999999999997499987899746456635578637999989999---8852789999999847---98


Q ss_pred             CCEEEEEECCC--HHHHHHHHHCCCCEEEECCC
Q ss_conf             95999992499--89999999769988998798
Q gi|254780476|r   77 IPVIAVTAFAM--KGDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        77 ipii~~t~~~~--~~~~~~~~~~g~~~~l~KPi  107 (123)
                      -.||-+|=...  .-|.....+.|..=-=..|+
T Consensus       390 ~~IvYVSCnPaTlARDl~~L~~~GY~l~~i~~v  422 (440)
T PRK13168        390 KRIVYVSCNPATLARDAGVLVEAGYRLKRAGVL  422 (440)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             979999389899999999998789489599996


No 388
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=33.23  E-value=42  Score=15.58  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=12.5

Q ss_pred             HHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             97699889987989899999999974
Q gi|254780476|r   95 RKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        95 ~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      .+.|.++|+..|-+.+.|.++|.+++
T Consensus       303 v~~~~~G~lv~~~d~~~la~ai~~ll  328 (365)
T cd03825         303 VDHGVTGYLAKPGDPEDLAEGIEWLL  328 (365)
T ss_pred             HCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             60798279979999999999999998


No 389
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=33.23  E-value=42  Score=15.58  Aligned_cols=84  Identities=23%  Similarity=0.273  Sum_probs=44.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEE------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHCCCC
Q ss_conf             877899539989999999999978989999------889799999998279989999504129695999999-9828576
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQ------TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ-IKEDSEL   74 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~------a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~-ir~~~~~   74 (123)
                      .++|+-+||.....      +......+..      ..+-.++++...++.||+|++.    ++-+.|.+.. ++.. ..
T Consensus        30 ~~~IiTiEDPiE~~------~~~~~~~i~q~e~g~~~~sf~~~lr~aLR~~PDvI~vG----EiRd~et~~~al~aa-~T   98 (198)
T cd01131          30 THHILTIEDPIEFV------HESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG----EMRDLETIRLALTAA-ET   98 (198)
T ss_pred             CCEEEEECCCHHHH------CCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECC----CCCCHHHHHHHHHHH-HC
T ss_conf             83699964737752------36764488733307886379999999985488857527----778999999999999-71


Q ss_pred             CCCCEEE-EEECCCHHHHHHHHHC
Q ss_conf             8995999-9924998999999976
Q gi|254780476|r   75 QEIPVIA-VTAFAMKGDEERIRKG   97 (123)
Q Consensus        75 ~~ipii~-~t~~~~~~~~~~~~~~   97 (123)
                      -+. ++. +.+.+-.+...+..+.
T Consensus        99 GHl-V~sTlHa~sa~~ai~Rl~~~  121 (198)
T cd01131          99 GHL-VMSTLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             CCE-EEEEECCCCHHHHHHHHHHH
T ss_conf             993-99976759899999999996


No 390
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=33.05  E-value=43  Score=15.56  Aligned_cols=70  Identities=17%  Similarity=0.097  Sum_probs=34.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC-----------CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             9999504129695999999982857689959999924-----------99899999997699889987989899999999
Q gi|254780476|r   49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF-----------AMKGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        49 lillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~-----------~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      +|+=|-.|-+-+-||.+..-- +.++.++-.|+=-..           .......+....|.+-.=.+--+.+++.+++.
T Consensus       146 vilGDGEl~EG~~WEAam~Aa-h~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~  224 (243)
T COG3959         146 VILGDGELDEGQVWEAAMTAA-HYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALE  224 (243)
T ss_pred             EEECCCCCCCCCHHHHHHHHH-HHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf             995575436652799999998-7053767999945874247765432685200788884380689975847999999998


Q ss_pred             HH
Q ss_conf             97
Q gi|254780476|r  118 KY  119 (123)
Q Consensus       118 ~~  119 (123)
                      +.
T Consensus       225 ~~  226 (243)
T COG3959         225 KA  226 (243)
T ss_pred             HH
T ss_conf             41


No 391
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11.  This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11.   Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions.  TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis.  S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity.  The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=32.94  E-value=43  Score=15.55  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=15.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH
Q ss_conf             7789953998999999999997
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIET   24 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~   24 (123)
                      +.|||||-+....+.....+..
T Consensus         1 ~~vlVVEK~avf~~L~~~~~~~   22 (160)
T cd00223           1 DFVLVVEKEAVFQRLIEEGFHE   22 (160)
T ss_pred             CEEEEEECHHHHHHHHHCCCCC
T ss_conf             9799996499999999748564


No 392
>PRK13129 consensus
Probab=32.79  E-value=43  Score=15.54  Aligned_cols=46  Identities=22%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             999999828576899599999249------9899999997699889987989899
Q gi|254780476|r   63 EITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI  111 (123)
Q Consensus        63 el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~  111 (123)
                      ++++++|+.   .++|++++|.++      .+....++.++|+++.+.--+.+++
T Consensus        85 ~~~~~~r~~---~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE  136 (267)
T PRK13129         85 EMLESLKGK---LTIPIILFTYYNPLLNRGMERFCEQAAAAGVAGLVVPDLPLEE  136 (267)
T ss_pred             HHHHHHHCC---CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf             999985434---7888899861078988559999999986698757678999899


No 393
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=32.68  E-value=43  Score=15.52  Aligned_cols=86  Identities=17%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHCCC-EEEE--------ECCHHHHHHHHHH---CCCCEEEEEEECCCCCH-------HHHHHHHHHC
Q ss_conf             98999999999997898-9999--------8897999999982---79989999504129695-------9999999828
Q gi|254780476|r   11 NELNMKLFRDLIETSGY-IALQ--------TRNGMEALELARQ---HKPDVIIMDIQLQEISG-------LEITKQIKED   71 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~-~v~~--------a~~g~eal~~l~~---~~~dlillD~~mp~~dG-------~el~~~ir~~   71 (123)
                      |+-|.+.--+-.++.|- .+..        +.+-+.-+++.++   --.|-|.+    -+|.|       |||.+.||+.
T Consensus       116 D~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~I----KDMaGlLTP~~AYELV~alK~~  191 (616)
T TIGR01108       116 DPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELAKELLEMGVDSICI----KDMAGLLTPKVAYELVSALKKE  191 (616)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE----ECCCCCCCHHHHHHHHHHHHHH
T ss_conf             877899999999973897899997124684367888999999999818860552----0200464415899999999742


Q ss_pred             CCCCCCCEEEEEEC--CC-HHHHHHHHHCCCCEE
Q ss_conf             57689959999924--99-899999997699889
Q gi|254780476|r   72 SELQEIPVIAVTAF--AM-KGDEERIRKGGCEAY  102 (123)
Q Consensus        72 ~~~~~ipii~~t~~--~~-~~~~~~~~~~g~~~~  102 (123)
                      .  .++||=+.|-.  +. +-...++.++|++.+
T Consensus       192 ~--~n~pvhLH~H~TtGmA~~AllkA~EAG~d~i  223 (616)
T TIGR01108       192 F--GNLPVHLHSHATTGMAEMALLKAIEAGADMI  223 (616)
T ss_pred             C--CCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             3--9746886324723379999998887078800


No 394
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=32.60  E-value=43  Score=15.52  Aligned_cols=74  Identities=26%  Similarity=0.380  Sum_probs=48.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHH----HHHHCCCCEEEEEEECCCCC--HHHHHHHHHHCCCC
Q ss_conf             899539989999999999978989----999889799999----99827998999950412969--59999999828576
Q gi|254780476|r    5 VMIVEDNELNMKLFRDLIETSGYI----ALQTRNGMEALE----LARQHKPDVIIMDIQLQEIS--GLEITKQIKEDSEL   74 (123)
Q Consensus         5 iLiVDD~~~~~~~l~~~l~~~g~~----v~~a~~g~eal~----~l~~~~~dlillD~~mp~~d--G~el~~~ir~~~~~   74 (123)
                      ++.+||.-..+..    |+.+|..    .....|.++...    .++...-=.++.|-.||.++  |+++.+..++..  
T Consensus        33 ~iaaEDTR~t~~L----L~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~g--  106 (275)
T COG0313          33 VIAAEDTRVTRKL----LSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAG--  106 (275)
T ss_pred             EEEEECCHHHHHH----HHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCC--
T ss_conf             9999514779999----9973999834503478677879999999866984899805899766685099999999869--


Q ss_pred             CCCCEEEEEECC
Q ss_conf             899599999249
Q gi|254780476|r   75 QEIPVIAVTAFA   86 (123)
Q Consensus        75 ~~ipii~~t~~~   86 (123)
                        ++|+.+.|-.
T Consensus       107 --i~V~~lPG~s  116 (275)
T COG0313         107 --IRVVPLPGPS  116 (275)
T ss_pred             --CCEEECCCCC
T ss_conf             --9189668834


No 395
>PRK13227 consensus
Probab=32.47  E-value=44  Score=15.50  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=34.5

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----------ECCCCHHHHHHHHHHH
Q ss_conf             999999982857689959999924998999999976998899-----------8798989999999997
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-----------SKPISLSIFMETIKKY  119 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l-----------~KPi~~~~L~~~i~~~  119 (123)
                      .++++.+|+.    .+++-++|+.............|..+|+           .|| +|+.++..+++.
T Consensus       102 ~~~L~~Lk~~----g~~~~ivTn~~~~~~~~~l~~~gl~~~Fd~iv~~ddv~~~KP-~P~~~~~~~~~l  165 (228)
T PRK13227        102 KETLEALKAQ----GYPLALVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKP-HPAPLLLVCEKL  165 (228)
T ss_pred             HHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf             9999999987----996578845706766678886093554344300333577799-759999999981


No 396
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent.   The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.36  E-value=44  Score=15.49  Aligned_cols=65  Identities=25%  Similarity=0.391  Sum_probs=40.1

Q ss_pred             HHHHHHHH---HCCCCEEEEE-------EECCCCCH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             99999998---2799899995-------04129695--999999982857689959999924998999999976998899
Q gi|254780476|r   36 MEALELAR---QHKPDVIIMD-------IQLQEISG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        36 ~eal~~l~---~~~~dlillD-------~~mp~~dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      +|++++++   +.-.|.+=+.       ..+|...|  .++++.||+..   .+||+...+...++..+++++.|..|++
T Consensus       241 ~e~~~~a~~l~~~gvd~i~vs~G~~~~~~~~~~~~~~~~~~a~~ik~~~---~ipvi~~G~i~~p~~ae~~l~~G~~DlV  317 (336)
T cd02932         241 EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGRADLV  317 (336)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf             9999999999975997899558987766667778642679999999878---9839997998999999999987994006


No 397
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=32.02  E-value=44  Score=15.46  Aligned_cols=74  Identities=22%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCE
Q ss_conf             89999999999978989------999889799---999998279989999504129695---999999982857689959
Q gi|254780476|r   12 ELNMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPV   79 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipi   79 (123)
                      ....+.+.++++..|..      ...-+.|+.   |+..+-...|+++++|=-+...|-   .++...+++......+++
T Consensus       105 ~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~  184 (213)
T cd03301         105 DEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT  184 (213)
T ss_pred             HHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf             99999999999875992465099556999999999999998759998998388764298999999999999999749989


Q ss_pred             EEEEEC
Q ss_conf             999924
Q gi|254780476|r   80 IAVTAF   85 (123)
Q Consensus        80 i~~t~~   85 (123)
                      |++|..
T Consensus       185 i~vTHd  190 (213)
T cd03301         185 IYVTHD  190 (213)
T ss_pred             EEECCC
T ss_conf             999999


No 398
>PRK05899 transketolase; Reviewed
Probab=31.96  E-value=44  Score=15.45  Aligned_cols=52  Identities=25%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             EEEEECCCHHHH---------HHHHHHHHHCCCEEEEECCHH------HHHHHHHH--CCCCEEEEEEE
Q ss_conf             789953998999---------999999997898999988979------99999982--79989999504
Q gi|254780476|r    4 KVMIVEDNELNM---------KLFRDLIETSGYIALQTRNGM------EALELARQ--HKPDVIIMDIQ   55 (123)
Q Consensus         4 kiLiVDD~~~~~---------~~l~~~l~~~g~~v~~a~~g~------eal~~l~~--~~~dlillD~~   55 (123)
                      =|+|+|||....         +-+...++.+||.+....+|.      .|++.++.  .+|-+|+.-..
T Consensus       182 LIvI~ndN~~sIdg~v~~~~~~~l~~rf~a~Gw~vi~v~DGhD~~~I~~Ai~~Ak~~~~kPtvI~v~Ti  250 (661)
T PRK05899        182 LIVIYDDNRISIDGDTSGWFSEDTKKRFEAYGWHVIEVVDGHDVEAIDAAIEEAKAETDKPTLIIAKTI  250 (661)
T ss_pred             EEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             899994797000664042105989999997698678437999999999999999864699868999823


No 399
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=31.92  E-value=44  Score=15.45  Aligned_cols=88  Identities=16%  Similarity=0.110  Sum_probs=55.2

Q ss_pred             CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             7789-953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVM-IVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiL-iVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      |||- +.+|++   ...+.+++.++..|.++...       .+-...+..++...||.|++-...  .++.-+.+++|+.
T Consensus       134 kkvail~~~~~yg~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~~pD~v~~~~~~--~~~~~~~~q~~~~  211 (312)
T cd06333         134 KTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSG--TPAALPAKNLRER  211 (312)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHC
T ss_conf             88999961760559999999999997799399999727987677999999985698999994575--1699999999976


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             57689959999924998999999
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      .  -+.|++.-.+.........+
T Consensus       212 G--~~~~~~~~~~~~~~~~~~~~  232 (312)
T cd06333         212 G--YKGPIYQTHGVASPDFLRLA  232 (312)
T ss_pred             C--CCCCEEECCCCCCHHHHHHH
T ss_conf             9--98708812766787999987


No 400
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=31.81  E-value=45  Score=15.44  Aligned_cols=98  Identities=11%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-----------------------CCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             9999999997898999988979999999827-----------------------99899995041296959999999828
Q gi|254780476|r   15 MKLFRDLIETSGYIALQTRNGMEALELARQH-----------------------KPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~-----------------------~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      .-.+...|+..|+++..++|. .|+++++--                       .+|+++.  -+.+-.|..-+-..+..
T Consensus        16 ~lYl~~~Lk~~G~~v~Va~np-AA~kLl~vaDpe~~Ylk~~~dld~~l~~i~e~~~d~~~~--FvHNDagvsYa~T~~~i   92 (138)
T pfam09001        16 ALYLSNKLKDKGFRVVVAANP-AALKLLEVADPEKYYLKEVVDLDKGIADIAEGDFDLIFG--FVHNDAGVSYAVTMKAV   92 (138)
T ss_pred             HHHHHHHHHHCCCCEEEECCH-HHHHHHHHCCCCCCHHCCEEEHHHHHHHHHCCCCCEEEE--EEECCCHHHHHHHHHHH
T ss_conf             999999987669606996698-887361211876400104355999874552068887999--97356226678988875


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHH
Q ss_conf             576899599999249989999999769988998798-98999999999
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKK  118 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi-~~~~L~~~i~~  118 (123)
                      ++.+...|| + +.. .+...+..+.++.-+..+-+ ++..|..++.+
T Consensus        93 ~~~~~~aiV-F-g~~-~e~la~~i~~~~e~i~~ra~HNP~pl~~kld~  137 (138)
T pfam09001        93 SNAKTYAIV-F-GEH-AEELAETIEFDAEVIAARAFHNPMPLKVKLDE  137 (138)
T ss_pred             CCCCEEEEE-E-CCC-HHHHHHHHCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf             478658999-3-588-79999986489817984312486666555214


No 401
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=31.63  E-value=45  Score=15.42  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=23.6

Q ss_pred             HCCCEEEEECCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7898999988979999999827998999950
Q gi|254780476|r   24 TSGYIALQTRNGMEALELARQHKPDVIIMDI   54 (123)
Q Consensus        24 ~~g~~v~~a~~g~eal~~l~~~~~dlillD~   54 (123)
                      ..+..|..+.+-.+|.+.+.++.+|+|++|=
T Consensus       119 ~~~~~v~V~~~R~~~~~~l~~~~~dviIlDD  149 (334)
T PRK00652        119 RTGAPVAVSPDRVKAIKALLALGADIIILDD  149 (334)
T ss_pred             CCCCCEEEECCHHHHHHHHHHCCCCEEEECC
T ss_conf             7898399956689999999965999999747


No 402
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.53  E-value=45  Score=15.41  Aligned_cols=85  Identities=20%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             CEEEEE--CCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCC--HHHHHHHHHHCCCCCCC
Q ss_conf             778995--399899999999999789899998897999999982-7998999950412969--59999999828576899
Q gi|254780476|r    3 KKVMIV--EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS--GLEITKQIKEDSELQEI   77 (123)
Q Consensus         3 kkiLiV--DD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~mp~~d--G~el~~~ir~~~~~~~i   77 (123)
                      +||.+.  -.+....+.++..|...|..+....+.......+.. .+-|+++. +..++.+  -.++++..|+    +.+
T Consensus        14 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~-iS~sg~~~~~~~~~~~ak~----~g~   88 (139)
T cd05013          14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA-ISFSGETKETVEAAEIAKE----RGA   88 (139)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHH----CCC
T ss_conf             92899980815999999999972589827987962778888745999999999-7686363789999999998----699


Q ss_pred             CEEEEEECCCHHHHH
Q ss_conf             599999249989999
Q gi|254780476|r   78 PVIAVTAFAMKGDEE   92 (123)
Q Consensus        78 pii~~t~~~~~~~~~   92 (123)
                      |+|.+|+........
T Consensus        89 ~ii~IT~~~~s~l~~  103 (139)
T cd05013          89 KVIAITDSANSPLAK  103 (139)
T ss_pred             EEEEEECCCCCHHHH
T ss_conf             799997999997799


No 403
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.52  E-value=45  Score=15.41  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=58.0

Q ss_pred             EEEECCCHH----HHHHHHHHHHHCCC--EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             899539989----99999999997898--99-998897999999982799899995041296959999999828576899
Q gi|254780476|r    5 VMIVEDNEL----NMKLFRDLIETSGY--IA-LQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         5 iLiVDD~~~----~~~~l~~~l~~~g~--~v-~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
                      |||=|+.-.    ..+.++..-+..++  .+ .++.+-+++.+.+.. .+|.|.+|=.-| .+=-+..+.+|+..  .+ 
T Consensus       166 iLIkdNHi~~~g~i~~ai~~~r~~~~~~~~IeVEv~~l~q~~~a~~~-g~DiI~LDnm~~-~~~~~~v~~l~~~~--~~-  240 (285)
T PRK07428        166 VMIKDNHIQAAGGIGEAITRIRQQIPYPLTIEVETETLEQVQEALEY-GADIIMLDNMPV-DQMQQAVQLIRQQN--PR-  240 (285)
T ss_pred             EEEEHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC-CCCEEEECCCCH-HHHHHHHHHHHHHC--CC-
T ss_conf             56777475202899999999997489982699996989999999966-999999879999-99999999987308--98-


Q ss_pred             CEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             59999924998999999976998899
Q gi|254780476|r   78 PVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        78 pii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      .++-.||.-..+...+..+.|++.+.
T Consensus       241 v~iEaSGgIn~~ni~~yA~tGVD~Is  266 (285)
T PRK07428        241 VKIEASGNITLETIRAVAETGVDYIS  266 (285)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             89999899999999999974999998


No 404
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=31.32  E-value=46  Score=15.39  Aligned_cols=84  Identities=11%  Similarity=0.155  Sum_probs=49.8

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCHHH-HHHHHHHCCCCEEEEEEE---CCCCCH----HHHHHHHHHCCCCCCCCEEE
Q ss_conf             9989999999999978989999889799-999998279989999504---129695----99999998285768995999
Q gi|254780476|r   10 DNELNMKLFRDLIETSGYIALQTRNGME-ALELARQHKPDVIIMDIQ---LQEISG----LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        10 D~~~~~~~l~~~l~~~g~~v~~a~~g~e-al~~l~~~~~dlillD~~---mp~~dG----~el~~~ir~~~~~~~ipii~   81 (123)
                      .++...+.++..+.-.=+.+..+..+.+ ..........|.+++|..   .++.+|    |+++...+     ...| ++
T Consensus        85 e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~~-----~~~~-~~  158 (208)
T COG0135          85 EDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKLR-----LSKP-VM  158 (208)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCEECHHHCCCCC-----CCCC-EE
T ss_conf             99999999985348756999986776224455441487748998188877789788677977705424-----5698-79


Q ss_pred             EEECCCHHHHHHHHHCCC
Q ss_conf             992499899999997699
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGC   99 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~   99 (123)
                      +.|.-.++...++++.+.
T Consensus       159 LAGGL~p~NV~~ai~~~~  176 (208)
T COG0135         159 LAGGLNPDNVAEAIALGP  176 (208)
T ss_pred             EECCCCHHHHHHHHHHCC
T ss_conf             977889899999998359


No 405
>PRK03094 hypothetical protein; Provisional
Probab=31.01  E-value=46  Score=15.36  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             999999999789899998897999999982799899995041296959999999828576899599999249
Q gi|254780476|r   15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA   86 (123)
Q Consensus        15 ~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~   86 (123)
                      ..-++++|+..||+|..-.+..+|      +..|++++--.=.++=|++       +. ....|||=-+|..
T Consensus        10 Ls~v~~~L~~~GY~Vv~l~~~~~a------~~~Da~ViTG~d~N~mGiq-------d~-~t~~pVI~A~GlT   67 (80)
T PRK03094         10 LTDVQQALKQKGYEVVTLNSEQDA------QGCDCCVVTGQDSNVMGIA-------DT-STKGSVITASGLT   67 (80)
T ss_pred             CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCCCC-------CC-CCCCCEEECCCCC
T ss_conf             259999999779878966871433------5678899958976522644-------13-4568748678999


No 406
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.00  E-value=46  Score=15.36  Aligned_cols=54  Identities=20%  Similarity=0.364  Sum_probs=30.3

Q ss_pred             CCCCEEEEEEECC---------------CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH----H-HHHCCCCEEEE
Q ss_conf             7998999950412---------------96959999999828576899599999249989999----9-99769988998
Q gi|254780476|r   45 HKPDVIIMDIQLQ---------------EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEE----R-IRKGGCEAYIS  104 (123)
Q Consensus        45 ~~~dlillD~~mp---------------~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~-~~~~g~~~~l~  104 (123)
                      +.+|+|+..=..|               -++..|++.++      .+.|+|.+||........    . ....|.+.++.
T Consensus        71 ~~~d~vV~SPgI~~~~p~~~~a~~~~i~v~~~~el~~~~------~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~  144 (450)
T PRK02472         71 ENFDLMVKNPGIPYDNPMVEEALEKGIPIITEVELAYLI------SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLA  144 (450)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHHHHHHHH------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             788799989987999999999998699674387888875------15978998279997319999999999749973999


No 407
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=30.96  E-value=46  Score=15.36  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEE
Q ss_conf             999999999978989------999889799---999998279989999504129695---99999998285768995999
Q gi|254780476|r   14 NMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~   81 (123)
                      .++...+.|...|..      +.+-+-|+.   ++..+-.+.|+++++|=-..+.|-   .++.+.+|+..+...+.||+
T Consensus       129 ~~~~~~~~L~~vgl~~~~~~~~~~LSGGqkQRv~IArAL~~~P~iLllDEPta~LDp~~~~~i~~~l~~l~~~~g~Til~  208 (262)
T PRK09984        129 QKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV  208 (262)
T ss_pred             HHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999987799656509853489999999999999971999999838867799999999999999999854979999


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   82 VT   83 (123)
Q Consensus        82 ~t   83 (123)
                      +|
T Consensus       209 vt  210 (262)
T PRK09984        209 TL  210 (262)
T ss_pred             EC
T ss_conf             88


No 408
>PRK06823 ornithine cyclodeaminase; Validated
Probab=30.65  E-value=47  Score=15.32  Aligned_cols=38  Identities=13%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf             77899539989999999999978989999889799999
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE   40 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~   40 (123)
                      ++|.+.+-++..++.+.+.++..|+.+..+.+.+++..
T Consensus       154 ~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~eav~  191 (315)
T PRK06823        154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAH  191 (315)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             09999469979999999999861990799489999974


No 409
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.55  E-value=47  Score=15.31  Aligned_cols=64  Identities=22%  Similarity=0.335  Sum_probs=38.8

Q ss_pred             HHHHHHHHHCCC-CEEEEEEECCCC-CHH--HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHH-HCCCCEE
Q ss_conf             999999982799-899995041296-959--999999828576899599999249989999999-7699889
Q gi|254780476|r   36 MEALELARQHKP-DVIIMDIQLQEI-SGL--EITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAY  102 (123)
Q Consensus        36 ~eal~~l~~~~~-dlillD~~mp~~-dG~--el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~-~~g~~~~  102 (123)
                      .+.++.+.+... .+++.|+.-.++ .|+  ++++.+++.   .++|+|+--|-...++..+++ +.|+++.
T Consensus       155 ~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~---~~ipiIasGGi~s~~di~~l~~~~~v~gv  223 (253)
T PRK01033        155 VEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELIKKISSA---VKIPVTALGGAGSLDDIADLIQEAGASAA  223 (253)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf             9999998746977999987848897668799999999987---89999997898999999999986797399


No 410
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=30.46  E-value=47  Score=15.31  Aligned_cols=70  Identities=20%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             ECCHHHHHHHHHH---C-CCCEEEEEEECCCCCH--H----------HHHHHHHHCCCCCCCCEEE-EEECC--CHHHHH
Q ss_conf             8897999999982---7-9989999504129695--9----------9999998285768995999-99249--989999
Q gi|254780476|r   32 TRNGMEALELARQ---H-KPDVIIMDIQLQEISG--L----------EITKQIKEDSELQEIPVIA-VTAFA--MKGDEE   92 (123)
Q Consensus        32 a~~g~eal~~l~~---~-~~dlillD~~mp~~dG--~----------el~~~ir~~~~~~~ipii~-~t~~~--~~~~~~   92 (123)
                      +.+.+|-.+.++.   . ..|.+-+.+.-|...+  .          ++++.+|+   ..++||++ +|...  ..+...
T Consensus       100 ~~~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~~---~~~~Pv~vKlsP~~~~i~~ia~  176 (301)
T PRK07259        100 GSTPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKS---VSKVPVIVKLTPNVTDIVEIAK  176 (301)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCHHHHHHHHH
T ss_conf             6776899999998645568888999654788885266608799999999999987---3489779980787121999999


Q ss_pred             HHHHCCCCEEEE
Q ss_conf             999769988998
Q gi|254780476|r   93 RIRKGGCEAYIS  104 (123)
Q Consensus        93 ~~~~~g~~~~l~  104 (123)
                      .+.+.|+++++.
T Consensus       177 ~~~~~gadgvv~  188 (301)
T PRK07259        177 AAEEAGADGLSL  188 (301)
T ss_pred             HHHHCCCCEEEE
T ss_conf             999759988999


No 411
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=30.42  E-value=47  Score=15.30  Aligned_cols=90  Identities=16%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEE--------------------ECCHHHHHHHHHHCCCCEEEEEEE---------CCCC
Q ss_conf             39989999999999978989999--------------------889799999998279989999504---------1296
Q gi|254780476|r    9 EDNELNMKLFRDLIETSGYIALQ--------------------TRNGMEALELARQHKPDVIIMDIQ---------LQEI   59 (123)
Q Consensus         9 DD~~~~~~~l~~~l~~~g~~v~~--------------------a~~g~eal~~l~~~~~dlillD~~---------mp~~   59 (123)
                      |+|-...+-+.++....|..|+.                    ..+.++|.+.+++...|.+-..+.         -|..
T Consensus       109 eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG~~HG~yk~~~p~L  188 (283)
T pfam01116       109 EENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSEDEALYTDPEEAKEFVERTGVDSLAVAIGNVHGVYKPLEPKL  188 (283)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             99999999999999873984899750036756676777632225899999999998698878764365344468999866


Q ss_pred             CHHHHHHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHCCCCEE
Q ss_conf             95999999982857689959999924998-99999997699889
Q gi|254780476|r   60 SGLEITKQIKEDSELQEIPVIAVTAFAMK-GDEERIRKGGCEAY  102 (123)
Q Consensus        60 dG~el~~~ir~~~~~~~ipii~~t~~~~~-~~~~~~~~~g~~~~  102 (123)
                      | |+++++|++.-   ++|+++.-++..+ ++..++.+.|+.-+
T Consensus       189 ~-~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki  228 (283)
T pfam01116       189 D-FDRLKEIQAAV---DVPLVLHGGSGVPDEEIRKAIKLGVAKI  228 (283)
T ss_pred             C-HHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf             9-99999999873---9987865899999999999998396699


No 412
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=30.36  E-value=47  Score=15.30  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             CEEEEE-CCCHHHHHHHHHHHHHCCCEEE-------EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             778995-3998999999999997898999-------98897999999982799899995041296959999999828576
Q gi|254780476|r    3 KKVMIV-EDNELNMKLFRDLIETSGYIAL-------QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL   74 (123)
Q Consensus         3 kkiLiV-DD~~~~~~~l~~~l~~~g~~v~-------~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~   74 (123)
                      ||+-++ +|+..-+.....+-+.++-++.       ...+-...+..++...||+|++  .++..++..++++.|+..-.
T Consensus       135 kkvail~~d~~~g~~~~~~~~~~~~~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~v~~--~~~~~~~~~~~~q~~~~g~~  212 (333)
T cd06332         135 KKVVIIAPDYAAGKDAVAGFKRTFKGEVVEEVYTPLGQLDFSAELAQIRAAKPDAVFV--FLPGGMAVNFVKQYDQAGLK  212 (333)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHHCCCC
T ss_conf             7799995786476999999999727041346754788655899999998669799999--35753799999999974998


Q ss_pred             CCCCEEEEEECCCHHHHHHH
Q ss_conf             89959999924998999999
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~   94 (123)
                      .++|++.-.....+......
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~  232 (333)
T cd06332         213 KKIPLYGPGFLTDQDTLPAQ  232 (333)
T ss_pred             CCCCEEEECCCCCHHHHHHH
T ss_conf             78618986054788899856


No 413
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=30.24  E-value=48  Score=15.28  Aligned_cols=72  Identities=10%  Similarity=0.203  Sum_probs=50.4

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             99999982799899995041296959999999828576899599999249989999999769988998798989999999
Q gi|254780476|r   37 EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI  116 (123)
Q Consensus        37 eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i  116 (123)
                      +..+.+.+   ++|+--...-.-.|+.+++.+|..    .-|.+++-.-.       .-.+.+-+-+.=|.++++|++.+
T Consensus        44 ~vv~~in~---n~v~Wggdv~~~Eg~~va~~l~~~----~fPfla~i~l~-------~~~m~vv~r~eG~~~p~el~~~L  109 (116)
T cd02991          44 EVIEYINT---RMLFWACSVAKPEGYRVSQALRER----TYPFLAMIMLK-------DNRMTIVGRLEGLIQPEDLINRL  109 (116)
T ss_pred             HHHHHHHH---CEEEEEEECCCHHHHHHHHHCCCC----CCCEEEEEEEE-------CCCEEEEEEEECCCCHHHHHHHH
T ss_conf             99999750---869999755975899999976888----79958999970-------88348999952689989999999


Q ss_pred             HHHHHC
Q ss_conf             997403
Q gi|254780476|r  117 KKYIGE  122 (123)
Q Consensus       117 ~~~l~~  122 (123)
                      ++++.+
T Consensus       110 ~~~i~~  115 (116)
T cd02991         110 TFIMDA  115 (116)
T ss_pred             HHHHHC
T ss_conf             999856


No 414
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=30.15  E-value=48  Score=15.27  Aligned_cols=52  Identities=17%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC--EEEEEEE---CCCCCHHHHH
Q ss_conf             87789953998999999999997898999988979999999827998--9999504---1296959999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQ---LQEISGLEIT   65 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~d--lillD~~---mp~~dG~el~   65 (123)
                      |+|||+|+-++.--.-.+..|            +.+.++.+++.+|+  ++..|+.   +|..|+--+.
T Consensus         1 MskvL~I~as~~~~~S~S~~l------------~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~   57 (202)
T COG1182           1 MSKVLVIKASPLGENSVSRKL------------ADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLA   57 (202)
T ss_pred             CCEEEEEECCCCCCCCHHHHH------------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH
T ss_conf             963899954777652589999------------999999999749998189865113877656899983


No 415
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=30.10  E-value=28  Score=16.60  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=61.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             7899539989999999999978989-99-988979999999827998999950412969599999998285768995999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYI-AL-QTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~-v~-~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      +|.=||-++...+.-+..|...|+. |. ...+|..++.  ..-|||.|++-..-|++- -.++.+++..... -+|+=+
T Consensus       102 ~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~p--e~APYD~IIVTAaa~~IP-~aLldQLk~GGRL-ViPvn~  177 (317)
T PRK13943        102 LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--EFSPYDVIFVTVGVDEVP-ETWFTQLKEGGRV-IVPINL  177 (317)
T ss_pred             EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCCCCC-HHHHHHCCCCCEE-EEEEEE
T ss_conf             599998679999999999997799864999799888886--679977899985276489-9999961859699-998410


Q ss_pred             EEECCCHHHHHHHHHCCC
Q ss_conf             992499899999997699
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGC   99 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~   99 (123)
                      .....++....+..+.++
T Consensus       178 ~~~~~q~~~~~~k~~~~~  195 (317)
T PRK13943        178 KLSRRQPAFLFKKKDPYL  195 (317)
T ss_pred             EEECCCCCEEEEECCCCC
T ss_conf             650568653577437764


No 416
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=30.06  E-value=48  Score=15.26  Aligned_cols=61  Identities=23%  Similarity=0.336  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEC-CCHHHHHHHHHCCCCEEE
Q ss_conf             799999998279989999504129695999999982857689959999924-998999999976998899
Q gi|254780476|r   35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAF-AMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~-~~~~~~~~~~~~g~~~~l  103 (123)
                      -+.+++.++...||+|=+   ||+. -.++.+++++..   .+|+|+ .|. ..+++..+++++|+.+.=
T Consensus       105 l~~~~~~i~~~~PD~IEi---lPG~-~p~~i~~i~~~~---~~PiIA-GGLI~~~edv~~aL~aGA~aVS  166 (174)
T pfam04309       105 LERSIEQIEKLEPDFIEV---LPGV-MPKVIQEITERT---NIPIIA-GGLIRTEEEVREALKAGAVAVS  166 (174)
T ss_pred             HHHHHHHHHHCCCCEEEE---CCHH-HHHHHHHHHHHC---CCCEEE-ECCCCCHHHHHHHHHCCCEEEE
T ss_conf             999999986479899999---8666-999999999747---999997-6783889999999984996998


No 417
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=30.04  E-value=43  Score=15.52  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             HHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             999827998999950412969599999998
Q gi|254780476|r   40 ELARQHKPDVIIMDIQLQEISGLEITKQIK   69 (123)
Q Consensus        40 ~~l~~~~~dlillD~~mp~~dG~el~~~ir   69 (123)
                      +.+....+|+|+.| ..|+.+|.....+.+
T Consensus       111 ~~~~~~~~DvVlSD-mAPn~tG~~~~D~~~  139 (209)
T PRK11188        111 ERVGDSKVDVVMSD-MAPNMSGTPAVDIPR  139 (209)
T ss_pred             HHHCCCCCCEEECC-CCCCCCCCHHHHHHH
T ss_conf             98589873089666-665667870335999


No 418
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=30.02  E-value=48  Score=15.26  Aligned_cols=53  Identities=19%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |+-+++.+.     .-+|+|. |...   ...+....|.++|+..|-+++.|.+.|.+++.+
T Consensus       316 gl~~lEAma-----~G~PvIa-s~~g---g~~e~v~~g~~G~l~~~~d~~~la~ai~~ll~d  368 (398)
T cd03800         316 GLTALEAMA-----CGLPVVA-TAVG---GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTD  368 (398)
T ss_pred             HHHHHHHHH-----CCCCEEE-CCCC---CCHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             148999998-----2999999-3899---807774179718997899999999999999779


No 419
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=30.01  E-value=34  Score=16.14  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=31.0

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE----EECC-CHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHH
Q ss_conf             9999504129695999999982857689959999----9249-9899999997699889-98798989999999997
Q gi|254780476|r   49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIAV----TAFA-MKGDEERIRKGGCEAY-ISKPISLSIFMETIKKY  119 (123)
Q Consensus        49 lillD~~mp~~dG~el~~~ir~~~~~~~ipii~~----t~~~-~~~~~~~~~~~g~~~~-l~KPi~~~~L~~~i~~~  119 (123)
                      +++=|-.+-+-.-||.+...... . .++-+|+-    +... ...........|.+.+ ..---+.+++.++++++
T Consensus       102 ~l~GDGEl~EG~~wEA~~~A~~~-~-~nli~iid~N~~~i~~~~~~~~~~f~afGw~~v~~vDGhd~~~i~~al~~a  176 (195)
T cd02007         102 AVIGDGALTGGMAFEALNNAGYL-K-SNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKVLKEV  176 (195)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHC-C-CCEEEEEECCCEEECCCCCCCCCHHHHCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf             99778114018999999997651-8-986999967987614886664236877488677860789999999999998


No 420
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=29.89  E-value=48  Score=15.25  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             CCHHHHHHH---HHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             998999999---99999789899998897------999999982799899995041296959999999828576899599
Q gi|254780476|r   10 DNELNMKLF---RDLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        10 D~~~~~~~l---~~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +|+...+++   .+.++..||.+..+.+.      .+.++.+.++.+|-+++   ++...--+..+.+++    ..+|+|
T Consensus        10 ~npf~~~l~~gie~~~~~~gy~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~---~~~~~~~~~~~~l~~----~~~PvV   82 (268)
T cd06298          10 TNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIF---MGGKISEEHREEFKR----SPTPVV   82 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHH----CCCCEE
T ss_conf             7989999999999999987998999989999899999999999669999998---267799999999996----699899


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   81 AV   82 (123)
Q Consensus        81 ~~   82 (123)
                      .+
T Consensus        83 ~i   84 (268)
T cd06298          83 LA   84 (268)
T ss_pred             EE
T ss_conf             95


No 421
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D.  PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.55  E-value=49  Score=15.21  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEE
Q ss_conf             999999999978989------999889799---999998279989999504129695---99999998285768995999
Q gi|254780476|r   14 NMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~   81 (123)
                      .++.+.+.|+..|..      ...-+.|+.   |+..+-...|+++++|=-+...|-   .++.+.|++......+.+|+
T Consensus       107 ~~~rv~e~l~~v~l~~~~~~~p~~LSGGqkQRVaiARAl~~~P~llllDEP~s~LD~~~~~~i~~~l~~l~~~~~~T~i~  186 (232)
T cd03300         107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF  186 (232)
T ss_pred             HHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             99999999875897787619966699899999999999865999999808876469999999999999999985999999


Q ss_pred             EEEC
Q ss_conf             9924
Q gi|254780476|r   82 VTAF   85 (123)
Q Consensus        82 ~t~~   85 (123)
                      +|-.
T Consensus       187 VTHd  190 (232)
T cd03300         187 VTHD  190 (232)
T ss_pred             ECCC
T ss_conf             9999


No 422
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.39  E-value=49  Score=15.20  Aligned_cols=99  Identities=21%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC-CCEEEEEECCCH
Q ss_conf             98999999999997-8989999889799999998279989999504129695999999982857689-959999924998
Q gi|254780476|r   11 NELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE-IPVIAVTAFAMK   88 (123)
Q Consensus        11 ~~~~~~~l~~~l~~-~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~-ipii~~t~~~~~   88 (123)
                      |...|++++++..+ ..+.+.-..-|-|-+-.=..+..|++++ +.=|...++.++++|++..+--. -+|-++-+...+
T Consensus       119 ~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~viv-VvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e  197 (255)
T COG3640         119 NALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDLVIV-VVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE  197 (255)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCEEEE-EECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf             8999999999751667489996334566656563257877999-957877888889999999987187549999950341


Q ss_pred             H---HHHHHHHCCCCEEEECCCCHH
Q ss_conf             9---999999769988998798989
Q gi|254780476|r   89 G---DEERIRKGGCEAYISKPISLS  110 (123)
Q Consensus        89 ~---~~~~~~~~g~~~~l~KPi~~~  110 (123)
                      .   ....+.+.|-.-.-.=|.+++
T Consensus       198 ~e~~~~~~~~~~~~~vlg~iP~d~~  222 (255)
T COG3640         198 EEELLRELAEELGLEVLGVIPYDPE  222 (255)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             1577776532279748997169878


No 423
>PRK05748 replicative DNA helicase; Provisional
Probab=29.36  E-value=49  Score=15.19  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=39.4

Q ss_pred             HHHHHHHCCCEEEEEC--CHHHH---H-HHHHHC-CCCEEEEEEE--C--CCCCH----H---HHHHHHHHCCCCCCCCE
Q ss_conf             9999997898999988--97999---9-999827-9989999504--1--29695----9---99999982857689959
Q gi|254780476|r   18 FRDLIETSGYIALQTR--NGMEA---L-ELARQH-KPDVIIMDIQ--L--QEISG----L---EITKQIKEDSELQEIPV   79 (123)
Q Consensus        18 l~~~l~~~g~~v~~a~--~g~ea---l-~~l~~~-~~dlillD~~--m--p~~dG----~---el~~~ir~~~~~~~ipi   79 (123)
                      ....+..+++.+....  +-.+-   . ++.+++ ..++|++|+-  |  |+.++    .   ++.+.+|....--++||
T Consensus       279 a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vviDYlqli~~~~~~~~~r~~ev~~isr~lK~lAkel~ipv  358 (448)
T PRK05748        279 AVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIVIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPV  358 (448)
T ss_pred             HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             99998659837855898868999999999999759988999716864477787764399999999999999999969988


Q ss_pred             EEEEECC
Q ss_conf             9999249
Q gi|254780476|r   80 IAVTAFA   86 (123)
Q Consensus        80 i~~t~~~   86 (123)
                      |+++=-+
T Consensus       359 i~lsQLn  365 (448)
T PRK05748        359 IALSQLS  365 (448)
T ss_pred             EEECCCC
T ss_conf             9970268


No 424
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=29.27  E-value=49  Score=15.18  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             HHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             998279989999504129-----695999999982857689959999924998999999
Q gi|254780476|r   41 LARQHKPDVIIMDIQLQE-----ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        41 ~l~~~~~dlillD~~mp~-----~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~   94 (123)
                      .+.+..+|++++|=-+.-     ++=-++..-|++.|...+   +++|+..-+......
T Consensus        91 ~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~e---vVlTGr~~p~~L~e~  146 (172)
T pfam02572        91 ALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQH---VVLTGRGAPPELIEL  146 (172)
T ss_pred             HHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHH
T ss_conf             97588989997355799975599689999999982899877---999899999999997


No 425
>PRK06483 short chain dehydrogenase; Provisional
Probab=29.13  E-value=50  Score=15.17  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCH-HHHHHHHHHCCCCCCCC
Q ss_conf             9877899539989999999999978989999-889799999998279989999504129695-99999998285768995
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISG-LEITKQIKEDSELQEIP   78 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l~~~~~dlillD~~mp~~dG-~el~~~ir~~~~~~~ip   78 (123)
                      |.|+|||.=-..-.=..+...|...|+.|.. ..+..++.+.+++.....+-.|+.  +.+. -++.+++.+.  +..+-
T Consensus         1 M~ktVlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~l~~~~~~~~~~Dv~--~~~~v~~~~~~~~~~--~g~id   76 (236)
T PRK06483          1 MSAPILITGAGQRIGLALAKHLLAQGQPVIVSYRSHYPAIDELRQAGATCIQADFS--TNAGIMAFIDELKQH--TDGLR   76 (236)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHHH--HCCCC
T ss_conf             99879997899889999999999889989999598479999998569989992279--999999999999998--39975


Q ss_pred             EEEEEE
Q ss_conf             999992
Q gi|254780476|r   79 VIAVTA   84 (123)
Q Consensus        79 ii~~t~   84 (123)
                      +++..+
T Consensus        77 ~lVnNA   82 (236)
T PRK06483         77 AIIHNA   82 (236)
T ss_pred             EEEECC
T ss_conf             999777


No 426
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=29.12  E-value=50  Score=15.17  Aligned_cols=39  Identities=15%  Similarity=0.304  Sum_probs=35.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf             877899539989999999999978989999889799999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE   40 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~   40 (123)
                      .++|.+.+=++..++.+.+.++..|+.+..+.+.++|++
T Consensus       154 i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~~av~  192 (312)
T pfam02423       154 IEEIRIYDRDPEAAEKFARNLQGKGFEIVACTSAEEAVE  192 (312)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             768999968989999999999834996599489999971


No 427
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=29.02  E-value=50  Score=15.16  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=56.6

Q ss_pred             EECCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCC--CCEEEEEEECCCCCHHHHHHH-HHHCCCCCCCCEEE
Q ss_conf             9539989999999999978--989999889799999998279--989999504129695999999-98285768995999
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGLEITKQ-IKEDSELQEIPVIA   81 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~--g~~v~~a~~g~eal~~l~~~~--~dlillD~~mp~~dG~el~~~-ir~~~~~~~ipii~   81 (123)
                      .|=..|.....-+++|+..  +++...++|-.+|.+++.+.+  ....+..-.-...-|++++.. |. +.....+..++
T Consensus       101 ~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~-D~~~N~TRF~v  179 (279)
T COG0077         101 TVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELYGLDILAENIE-DEPNNRTRFLV  179 (279)
T ss_pred             EEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHCCCHHHHHCCC-CCCCCEEEEEE
T ss_conf             88747289999999999728883699817889999999728986736876987897739576761355-78888578999


Q ss_pred             EEE
Q ss_conf             992
Q gi|254780476|r   82 VTA   84 (123)
Q Consensus        82 ~t~   84 (123)
                      ++-
T Consensus       180 l~r  182 (279)
T COG0077         180 LSR  182 (279)
T ss_pred             EEC
T ss_conf             965


No 428
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.97  E-value=50  Score=15.15  Aligned_cols=100  Identities=10%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             CCEEEEEC--CCHH---HHHHHHHHHHHCCCEEEEECCHHHHHHH-----------H-----HHCCCCEEEEEEECCCCC
Q ss_conf             87789953--9989---9999999999789899998897999999-----------9-----827998999950412969
Q gi|254780476|r    2 LKKVMIVE--DNEL---NMKLFRDLIETSGYIALQTRNGMEALEL-----------A-----RQHKPDVIIMDIQLQEIS   60 (123)
Q Consensus         2 ~kkiLiVD--D~~~---~~~~l~~~l~~~g~~v~~a~~g~eal~~-----------l-----~~~~~dlillD~~mp~~d   60 (123)
                      .|+|+||-  +++.   ..+.+.+.|...|+.+....+.......           +     ..+..|+++.=    +.|
T Consensus         4 ~R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l----GGD   79 (303)
T PRK03372          4 ERTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVL----GGD   79 (303)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE----CCC
T ss_conf             8889999708998999999999999997889899970401002444555565422345322335785589997----787


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             5999999982857689959999924998999999976998899879898999999999740
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      |- +++..|.. ....+||+-+.             .|--+||+. +.++++.+.+.+++.
T Consensus        80 GT-~L~aar~~-~~~~iPilGiN-------------~G~lGFLt~-~~~~~~~~~l~~i~~  124 (303)
T PRK03372         80 GT-FLRAAELA-RNADVPVLGVN-------------LGHVGFLAE-AEREDLDEAVERVVD  124 (303)
T ss_pred             HH-HHHHHHHH-CCCCCCEEEEE-------------CCCCEEECC-CCHHHHHHHHHHHHC
T ss_conf             89-99999984-44799889872-------------598213124-698899999999980


No 429
>KOG2335 consensus
Probab=28.92  E-value=50  Score=15.15  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=57.9

Q ss_pred             EECCCHHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHH---HCCCCEEEEEEECCCCCH-------HHHHHHHHHCC
Q ss_conf             953998999999999997898----9999889799999998---279989999504129695-------99999998285
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGY----IALQTRNGMEALELAR---QHKPDVIIMDIQLQEISG-------LEITKQIKEDS   72 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~----~v~~a~~g~eal~~l~---~~~~dlillD~~mp~~dG-------~el~~~ir~~~   72 (123)
                      +.|+-+...++++.+-...+.    .+....+-++.++.++   .-.-+.+.+--.-+...|       |+..+.||++-
T Consensus       122 L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~  201 (358)
T KOG2335         122 LMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV  201 (358)
T ss_pred             ECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf             02388999999999985259986999985576787899999998679868999365577628888876779999999747


Q ss_pred             CCCCCCEEEEEECCCHHHHHHHHH-CCCCEEEE
Q ss_conf             768995999992499899999997-69988998
Q gi|254780476|r   73 ELQEIPVIAVTAFAMKGDEERIRK-GGCEAYIS  104 (123)
Q Consensus        73 ~~~~ipii~~t~~~~~~~~~~~~~-~g~~~~l~  104 (123)
                        +++|+++--+-....+...+.+ .|+++.+.
T Consensus       202 --~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~  232 (358)
T KOG2335         202 --PDIPVIANGNILSLEDVERCLKYTGADGVMS  232 (358)
T ss_pred             --CCCCEEEECCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             --6770895088576899999999758746886


No 430
>KOG0780 consensus
Probab=28.91  E-value=50  Score=15.15  Aligned_cols=60  Identities=17%  Similarity=0.206  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC-C-CCCEEEEEECCCHHHHHHH
Q ss_conf             7999999982799899995041296959999999828576-8-9959999924998999999
Q gi|254780476|r   35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL-Q-EIPVIAVTAFAMKGDEERI   94 (123)
Q Consensus        35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~-~-~ipii~~t~~~~~~~~~~~   94 (123)
                      ..++++..+.+.+|+|++|..=-...-.++..++++.... + +.-|.++-++.....+.++
T Consensus       172 a~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780         172 ASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
T ss_conf             99999988863972899827873012489999999998515987389998562007679999


No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=28.90  E-value=50  Score=15.15  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEE-EEECCCHHHHHHHH
Q ss_conf             7999999982799899995041296959999999828-5768995999-99249989999999
Q gi|254780476|r   35 GMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED-SELQEIPVIA-VTAFAMKGDEERIR   95 (123)
Q Consensus        35 g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~-~~~~~ipii~-~t~~~~~~~~~~~~   95 (123)
                      +.|+++..+.+.+|+||+|..=-+.---+|.++.++- ...+.--||+ +-|+-..+...+|.
T Consensus       192 A~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIGQAA~~QAk  254 (453)
T TIGR01425       192 ASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIGQAAFSQAK  254 (453)
T ss_pred             ECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             002011322127847998379873225888899876863349983699806616678899999


No 432
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.60  E-value=51  Score=15.12  Aligned_cols=72  Identities=22%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHCCCE------EEEECCHHHH---HHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCEEE
Q ss_conf             999999999978989------9998897999---99998279989999504129695---99999998285768995999
Q gi|254780476|r   14 NMKLFRDLIETSGYI------ALQTRNGMEA---LELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~------v~~a~~g~ea---l~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipii~   81 (123)
                      ..+...++++..|..      +..-+.|+.-   +..+-...|+++++|=-....|-   .++.+.+++......+++|+
T Consensus       108 ~~~~v~e~l~~~gl~~~~~~~P~~LSGGq~QRVaiARAL~~~P~llLlDEP~saLD~~~~~~i~~~l~~l~~~~~~t~i~  187 (214)
T cd03297         108 DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF  187 (214)
T ss_pred             HHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             99999999987799778608977799299999999999871999999808876669999999999999999985998999


Q ss_pred             EEEC
Q ss_conf             9924
Q gi|254780476|r   82 VTAF   85 (123)
Q Consensus        82 ~t~~   85 (123)
                      +|..
T Consensus       188 VTHd  191 (214)
T cd03297         188 VTHD  191 (214)
T ss_pred             ECCC
T ss_conf             9899


No 433
>PRK07773 replicative DNA helicase; Validated
Probab=28.58  E-value=51  Score=15.11  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=27.0

Q ss_pred             HHCCCCEEEEEEE--CCCCCH--------HHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             8279989999504--129695--------999999982857689959999924
Q gi|254780476|r   43 RQHKPDVIIMDIQ--LQEISG--------LEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        43 ~~~~~dlillD~~--mp~~dG--------~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      +.+..++|++||-  |..-+.        -++.+.+|....--++|||++|--
T Consensus       310 ~~~~l~lIvvDYLQLm~~~~~~~~R~qevs~isr~LK~lAkeL~vPVialsQl  362 (868)
T PRK07773        310 QKANLKLIVVDYLQLMTSGKKYESRQQEVSEFSRHLKLLAKELEVPVIALSQL  362 (868)
T ss_pred             HCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             52699889996155247898876298999999899999998758978987103


No 434
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=28.52  E-value=51  Score=15.11  Aligned_cols=95  Identities=17%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHH----HHC---CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             9989999999999978989999-88979999999----827---998999950412969599999998285768995999
Q gi|254780476|r   10 DNELNMKLFRDLIETSGYIALQ-TRNGMEALELA----RQH---KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        10 D~~~~~~~l~~~l~~~g~~v~~-a~~g~eal~~l----~~~---~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      ++......+.+++..+||.-.+ .....+++-.+    +..   .+.+-+- .--+..|+-.++++||.....   -||+
T Consensus       117 ~~~~ls~A~~dlv~~~~W~~ftiiYe~~~~L~rLq~ll~~~~~~~~~i~vr-~l~~~~d~r~vLkeIk~~~~~---~iIi  192 (333)
T cd06394         117 SNEDISVAVAGILNSFNYPTASLICAKAECLLRLEELLRQFLISKETLSVR-MLDDSRDPTPLLKEIRDDKTA---TIII  192 (333)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCCHHHHHHHHHHCCCC---EEEE
T ss_conf             989999999999997699669999707356899999987216789807999-878899867999999857774---7999


Q ss_pred             -EEECCCHHHHHHHHHCCCCE----EEECCCC
Q ss_conf             -99249989999999769988----9987989
Q gi|254780476|r   82 -VTAFAMKGDEERIRKGGCEA----YISKPIS  108 (123)
Q Consensus        82 -~t~~~~~~~~~~~~~~g~~~----~l~KPi~  108 (123)
                       .+.........++.+.|..+    |+.-.++
T Consensus       193 Dc~~e~~~~iLkqa~qlgM~~~~y~YiiT~LD  224 (333)
T cd06394         193 DANASMSHTILLKASELGMTSAFYKYILTTMD  224 (333)
T ss_pred             ECCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             88788899999999973004677089996353


No 435
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=28.50  E-value=51  Score=15.11  Aligned_cols=12  Identities=25%  Similarity=0.468  Sum_probs=5.1

Q ss_pred             HHHHCCCCEEEE
Q ss_conf             998279989999
Q gi|254780476|r   41 LARQHKPDVIIM   52 (123)
Q Consensus        41 ~l~~~~~dlill   52 (123)
                      .+..-+||+|+.
T Consensus        86 ~I~aLkPDLIi~   97 (289)
T TIGR03659        86 KIKSLKPTVVLS   97 (289)
T ss_pred             HHHHCCCCEEEE
T ss_conf             997369978995


No 436
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417   The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity.  ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=28.36  E-value=51  Score=15.09  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEEE-ECCC-CCHH----------HHHHHHH
Q ss_conf             77899539989999999999978-98999988979999999827998999950-4129-6959----------9999998
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETS-GYIALQTRNGMEALELARQHKPDVIIMDI-QLQE-ISGL----------EITKQIK   69 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~-g~~v~~a~~g~eal~~l~~~~~dlillD~-~mp~-~dG~----------el~~~ir   69 (123)
                      +||+++|-|...-++++..+..- .|+-.+    --....+.+.++||+||=- +-|- -||+          ++-+.+.
T Consensus       249 q~v~f~DTD~i~T~vfa~~y~G~eDfeql~----P~~~~~i~~~r~DL~ll~~p~tew~~Dg~R~l~~~~~R~~F~~~l~  324 (346)
T TIGR01526       249 QKVAFIDTDFITTQVFAKLYEGREDFEQLH----PFLKKTIAEYRFDLTLLLKPNTEWVDDGLRSLGSEESRKEFQELLE  324 (346)
T ss_pred             CEEEEEECCHHHHHHHHHHCCCCCCHHHCC----HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             747898477678999998707865544506----2788776327884799727998734288520774322789999999


Q ss_pred             HCCCCCCCCEEEEEECC
Q ss_conf             28576899599999249
Q gi|254780476|r   70 EDSELQEIPVIAVTAFA   86 (123)
Q Consensus        70 ~~~~~~~ipii~~t~~~   86 (123)
                      +.-.-..++.+.++..+
T Consensus       325 ~~L~~~~~~f~~v~~~~  341 (346)
T TIGR01526       325 RALAEFGLSFVVVEEDD  341 (346)
T ss_pred             HHHHHCCCCEEEEECCC
T ss_conf             99997099469983387


No 437
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.28  E-value=52  Score=15.08  Aligned_cols=55  Identities=24%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             CCCEEEEEEECCCCCH------------HHHHHHHHHCCCCCCCCEEE-EEECC--CHHHHHHHHHCCCCEEE
Q ss_conf             9989999504129695------------99999998285768995999-99249--98999999976998899
Q gi|254780476|r   46 KPDVIIMDIQLQEISG------------LEITKQIKEDSELQEIPVIA-VTAFA--MKGDEERIRKGGCEAYI  103 (123)
Q Consensus        46 ~~dlillD~~mp~~dG------------~el~~~ir~~~~~~~ipii~-~t~~~--~~~~~~~~~~~g~~~~l  103 (123)
                      ..|.+-+.+.-|...+            .++++.+|+   ..++||++ +|...  .......+.+.|+++++
T Consensus       115 gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~---~~~~Pi~vKlsP~~~~i~~ia~~~~~~g~dgiv  184 (296)
T cd04740         115 GADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK---ATDVPVIVKLTPNVTDIVEIARAAEEAGADGLT  184 (296)
T ss_pred             CCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             8988999788998676367757499999999999986---048966997189800099999999976998899


No 438
>PRK13116 consensus
Probab=28.17  E-value=52  Score=15.07  Aligned_cols=36  Identities=8%  Similarity=0.182  Sum_probs=15.1

Q ss_pred             CCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf             899599999249------989999999769988998798989
Q gi|254780476|r   75 QEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLS  110 (123)
Q Consensus        75 ~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~  110 (123)
                      +++|++++|.++      .+....++.++|+++.+.--+.++
T Consensus        93 ~~~PivlM~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~e  134 (278)
T PRK13116         93 PEVPIGMLIYGNVPFTRGLDRFYQEFAEAGADSILLPDVPVR  134 (278)
T ss_pred             CCCCEEEEECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf             987689980572887727999999997769758994699978


No 439
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650   This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=27.89  E-value=52  Score=15.04  Aligned_cols=99  Identities=25%  Similarity=0.321  Sum_probs=65.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCE-----------EEEECCHHHHHHHHHH----CCCC-EEEEEEECCC-CCH--HH
Q ss_conf             77899539989999999999978989-----------9998897999999982----7998-9999504129-695--99
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYI-----------ALQTRNGMEALELARQ----HKPD-VIIMDIQLQE-ISG--LE   63 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~-----------v~~a~~g~eal~~l~~----~~~d-lillD~~mp~-~dG--~e   63 (123)
                      .|+.|.-..-...+.+++...++.-+           -..+.+-.+.|+.++.    +..+ +|+||+.-=+ +.|  .+
T Consensus       104 ~R~vVaTETl~~~ell~e~~rnyPPer~VVSlDfK~~~L~~~~l~~~leevrd~l~~f~~~GlI~LdI~sVGt~~G~n~e  183 (230)
T TIGR00734       104 DRVVVATETLDSTELLKEILRNYPPERIVVSLDFKEKRLDASSLEESLEEVRDLLNSFDLDGLIVLDISSVGTSKGVNLE  183 (230)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHH
T ss_conf             63688624504678999986158986379998400552000130456888875306631013798336330567787888


Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             99999828576899599999249989999999769988998
Q gi|254780476|r   64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        64 l~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      +++..+...   +-||+.=-|-....+.+.+.++|+++.|.
T Consensus       184 ll~~~l~l~---e~PV~~GGGi~g~EdlEl~~~mGv~avLv  221 (230)
T TIGR00734       184 LLKKVLELS---ERPVILGGGIKGVEDLELLKEMGVSAVLV  221 (230)
T ss_pred             HHHHHHHHH---CCCEEECCCCCCCCHHHHHHHCCCCEEEE
T ss_conf             999886442---48714068736751078888568765755


No 440
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=27.85  E-value=52  Score=15.04  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=43.9

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf             999999827998999950412969-59999999828576899599999249989999999769988998
Q gi|254780476|r   37 EALELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS  104 (123)
Q Consensus        37 eal~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~  104 (123)
                      +-.+.+-+.-.|++++|.-=.+-. =+++.+.||+.  +.++|||+ -+-...+-.....++|++....
T Consensus       241 eRa~~Lv~aGvDvlvIDtAhGhs~~v~~~ik~ik~~--~p~v~vIa-GNVaT~~~a~~Li~aGAD~vkV  306 (499)
T PTZ00314        241 ERAAALIDAGVDVLVLDSSQGNSIYQIDFIKWIKST--YPHLEVIA-GNVVTQDQAKNLIDAGADGIRI  306 (499)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH--CCCCCEEE-EEECHHHHHHHHHHCCCCEEEE
T ss_conf             999999986998999816887727899999998852--79884676-4331099999999749987997


No 441
>pfam03830 PTSIIB_sorb PTS system sorbose subfamily IIB component.
Probab=27.71  E-value=53  Score=15.02  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=31.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHCCC
Q ss_conf             87789953998999999999997---89899998897999999982799
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET---SGYIALQTRNGMEALELARQHKP   47 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~---~g~~v~~a~~g~eal~~l~~~~~   47 (123)
                      .++|++|||....-.+.+..+..   .|..+.. .+-++|.+.+.+..+
T Consensus        26 ~~~IiVvdD~~A~d~~~k~~l~ma~P~gvk~~i-~sv~~a~~~l~~~~~   73 (151)
T pfam03830        26 ANRIIVVNDEVANDELRKTLLKMAAPAGVKVSI-FSVEKAIEVIKKGKY   73 (151)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEE-EEHHHHHHHHHCCCC
T ss_conf             999999775224799999999963899987999-879999999857677


No 442
>PRK10867 signal recognition particle protein; Provisional
Probab=27.66  E-value=53  Score=15.02  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             CCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             8778995399---899999999999789899998897-------999999982799899995041296959999999828
Q gi|254780476|r    2 LKKVMIVEDN---ELNMKLFRDLIETSGYIALQTRNG-------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         2 ~kkiLiVDD~---~~~~~~l~~~l~~~g~~v~~a~~g-------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      .|+||+|--|   +...+.++.+-+..|..+..-..+       .+|++.++.+.+|+|++|.-=-.-.--++..++++.
T Consensus       129 ~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i  208 (453)
T PRK10867        129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV  208 (453)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHH
T ss_conf             98379855887705899999999985198043678899889999999999997799999997876012108889999999


Q ss_pred             CCC--CCCCEEEEEECCCHHHHHHHH----HCCCCEEEE
Q ss_conf             576--899599999249989999999----769988998
Q gi|254780476|r   72 SEL--QEIPVIAVTAFAMKGDEERIR----KGGCEAYIS  104 (123)
Q Consensus        72 ~~~--~~ipii~~t~~~~~~~~~~~~----~~g~~~~l~  104 (123)
                      ...  .+--++++-+....+...++.    ..++++.+.
T Consensus       209 ~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~~~~gvIl  247 (453)
T PRK10867        209 HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVL  247 (453)
T ss_pred             HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             876378713797432235668999999998559870787


No 443
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.54  E-value=53  Score=15.01  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             CHHHHHHHH---HHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEE
Q ss_conf             989999999---99997898999988979------9999998279989999
Q gi|254780476|r   11 NELNMKLFR---DLIETSGYIALQTRNGM------EALELARQHKPDVIIM   52 (123)
Q Consensus        11 ~~~~~~~l~---~~l~~~g~~v~~a~~g~------eal~~l~~~~~dlill   52 (123)
                      |+...++++   +.+...||.+..+.+..      +.++.+.++.+|-+++
T Consensus        11 npff~~l~~~ie~~~~~~Gy~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi   61 (264)
T cd06274          11 NRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIV   61 (264)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             879999999999999986998999938999899999999999669987997


No 444
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=27.40  E-value=53  Score=14.99  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHHHHHH-CCCCEEEEEE
Q ss_conf             877899539989999999999978989----9998897999999982-7998999950
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYI----ALQTRNGMEALELARQ-HKPDVIIMDI   54 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~----v~~a~~g~eal~~l~~-~~~dlillD~   54 (123)
                      .+.|.-||-+....+..++.+.-.|+.    -..+.+.-+.++.++. .+||+|++|=
T Consensus       146 A~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~VilDP  203 (286)
T pfam10672       146 ASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVIIDP  203 (286)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECC
T ss_conf             8779999198899999999999769995436999830999999986179998799879


No 445
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of  galactose alpha-1,6 linkages in amylovoran.
Probab=27.37  E-value=54  Score=14.99  Aligned_cols=54  Identities=11%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             59999999828576899599999249989999999769988998798989999999997403
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      |+-+++.+-     ..+|||.--....   .......|.++++.+|-+++.|.++|.+++.+
T Consensus       266 gl~~lEAma-----~G~PvIas~~~gg---~~e~v~~~~~G~l~~~~d~~~la~~i~~ll~~  319 (348)
T cd03820         266 PMVLLEAMA-----FGLPVISFDCPTG---PSEIIEDGVNGLLVPNGDVEALAEALLRLMED  319 (348)
T ss_pred             CCHHHHHHH-----CCCCEEEECCCCC---HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             708999998-----6999999679988---49995389629998899999999999999779


No 446
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.36  E-value=54  Score=14.99  Aligned_cols=18  Identities=28%  Similarity=0.374  Sum_probs=9.0

Q ss_pred             CCCHHHHHHHHHCCCCEE
Q ss_conf             499899999997699889
Q gi|254780476|r   85 FAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        85 ~~~~~~~~~~~~~g~~~~  102 (123)
                      .+..+...+..++|++.|
T Consensus       362 nda~~ai~RL~~mGv~~~  379 (500)
T COG2804         362 NDAPGAITRLLEMGVEPY  379 (500)
T ss_pred             CCHHHHHHHHHHCCCCHH
T ss_conf             765889999998499889


No 447
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.31  E-value=54  Score=14.98  Aligned_cols=90  Identities=21%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             77899539989999999999978989--99988979999999827-9989999504129695999999982857689959
Q gi|254780476|r    3 KKVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPV   79 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l~~~l~~~g~~--v~~a~~g~eal~~l~~~-~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipi   79 (123)
                      .||--+|-|+...+.+++.+...|+.  .....++.+++.   .. .||.||+.-. -..+  ++++..-.  .++.---
T Consensus        59 ~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~---~~~~~daiFIGGg-~~i~--~ile~~~~--~l~~ggr  130 (187)
T COG2242          59 GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP---DLPSPDAIFIGGG-GNIE--EILEAAWE--RLKPGGR  130 (187)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHC---CCCCCCEEEECCC-CCHH--HHHHHHHH--HCCCCCE
T ss_conf             5599992588899999999998499967999546457636---9999999998798-7778--99999999--7186876


Q ss_pred             EEEEECCCHHH---HHHHHHCCCC
Q ss_conf             99992499899---9999976998
Q gi|254780476|r   80 IAVTAFAMKGD---EERIRKGGCE  100 (123)
Q Consensus        80 i~~t~~~~~~~---~~~~~~~g~~  100 (123)
                      +++.+...+..   .+...+.|+.
T Consensus       131 lV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         131 LVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCC
T ss_conf             999860088899999999972985


No 448
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=27.30  E-value=54  Score=14.98  Aligned_cols=61  Identities=15%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEC
Q ss_conf             9999999827998999950412969599999998285768995999992499899999997699889987
Q gi|254780476|r   36 MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK  105 (123)
Q Consensus        36 ~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~K  105 (123)
                      +++++.+.+...|.|++.-..-..+-=++++.|++.   .++|+|++-+....      ..-++|.|+.-
T Consensus        22 ~~~~~~~~~sgtDaI~VGGS~~~~~~d~~v~~ik~~---~~lPviLfPg~~~~------vs~~aDailf~   82 (231)
T pfam01884        22 EEIIEIVAESGTDAIMIGGSTGGVTLDNVVRLIKKV---YGLPIILFPGNPSG------VSRYADAIFFM   82 (231)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH---CCCCEEEECCCHHH------CCCCCCEEEEE
T ss_conf             999999997499999988988885689999999985---39998995698676------58677846656


No 449
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=27.24  E-value=54  Score=14.97  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             599999998285768995999992499899999997699889987989899999999974
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI  120 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l  120 (123)
                      |.-+++.+-     ..+|||+ |....   ..+..+.|.++|+.+|-+++.|.+.+.+.+
T Consensus       277 g~~~lEAma-----~G~pvI~-s~~gg---~~e~i~~g~~G~l~~~~d~~~la~~i~~l~  327 (353)
T cd03811         277 PNVLLEAMA-----LGTPVVA-TDCPG---PREILEDGENGLLVPVGDEAALAAAALALL  327 (353)
T ss_pred             CHHHHHHHH-----CCCCEEE-CCCCC---HHHHHCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf             538999998-----0998999-48998---489844898389978999999999999998


No 450
>KOG0189 consensus
Probab=27.16  E-value=54  Score=14.97  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----HCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             999999999978989999889799999998-----2799899995041296959999999828576899599999
Q gi|254780476|r   14 NMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus        14 ~~~~l~~~l~~~g~~v~~a~~g~eal~~l~-----~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t   83 (123)
                      -++++..-+...|-.+.++.+|.+.+.++.     ..+|-++++|..=-.-.-+.+...+...  +.+++|-.+-
T Consensus        34 P~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~Vekk--Y~~i~I~~~~  106 (261)
T KOG0189          34 PQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKK--YGNIRIHVYF  106 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCEEEEEEC
T ss_conf             899999999972148999864645037999998739996169953344485887899999875--4865789975


No 451
>KOG2292 consensus
Probab=26.97  E-value=54  Score=14.95  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=37.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf             9877899539989999999999978989999889799999998279989999
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM   52 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlill   52 (123)
                      |..|.-+||+|.=|...+...=+.+      +++.+.|++.+++...|-|++
T Consensus       556 MAnRTtlVDNNTWNNtHIa~VGkAM------sS~EekayeImr~lDVdYVLV  601 (751)
T KOG2292         556 MANRTTLVDNNTWNNTHIATVGKAM------SSPEEKAYEIMRELDVDYVLV  601 (751)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC------CCCHHHHHHHHHHCCCCEEEE
T ss_conf             1452498516865405788877641------892777999999738878999


No 452
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.89  E-value=55  Score=14.94  Aligned_cols=40  Identities=20%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
Q ss_conf             98778995399899999999999789899998897999999
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL   41 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~   41 (123)
                      |-|||||+.--+..+++++. +..+|++.....+..++...
T Consensus         1 M~~kvLIANRGEIA~Ri~rt-~~elgi~tvavys~~D~~a~   40 (449)
T PRK06111          1 MFQKVLIANRGEIAVRIIRT-CQKLGIRTVAIYSEADEDAL   40 (449)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCCEEEECCHHHCCCH
T ss_conf             97618998787999999999-99849979999173645683


No 453
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77  E-value=21  Score=17.32  Aligned_cols=60  Identities=22%  Similarity=0.314  Sum_probs=40.6

Q ss_pred             CCCEEEEEC------CCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCH
Q ss_conf             987789953------9989999999999978989999889799999998279989999504129695
Q gi|254780476|r    1 MLKKVMIVE------DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG   61 (123)
Q Consensus         1 m~kkiLiVD------D~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG   61 (123)
                      |+||+|||=      .-+.-..+++..|+..||.|....+. +|+.--.-+..|+|+=-..|..+.-
T Consensus         2 m~~kalIvwgGW~gHeP~~~ahi~~~~l~ee~f~vev~~~t-~afad~s~~d~~lIvP~~tms~I~k   67 (239)
T COG3828           2 MEKKALIVWGGWRGHEPETRAHIIKGPLEEEGFLVEVGGTT-EAFADPSLQDLDLIVPEKTMSTIEK   67 (239)
T ss_pred             CCCCEEEEECCCCCCCCHHCCHHCCCCCHHHCEEEEECCCC-CCCCCCCCCCHHHHCHHHHCCCCCH
T ss_conf             97515899725467885120201048682124489964742-2113732021223150554175759


No 454
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=26.75  E-value=55  Score=14.92  Aligned_cols=44  Identities=16%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             29695999999982857689959999924998999999976998899
Q gi|254780476|r   57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        57 p~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      |..--.++++++|+..   ++||+...+....+..+++++.|..|++
T Consensus       269 ~~g~~~~~a~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V  312 (343)
T cd04734         269 PPGPFLPLAARIKQAV---DLPVFHAGRIRDPAEAEQALAAGHADMV  312 (343)
T ss_pred             CCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf             7643488999999972---9859997998999999999987996216


No 455
>cd01139 TroA_f Periplasmic binding protein TroA_f.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.70  E-value=55  Score=14.92  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=29.4

Q ss_pred             HHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             99998279989999504129-695999999982857689959999924
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQE-ISGLEITKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~-~dG~el~~~ir~~~~~~~ipii~~t~~   85 (123)
                      ++.+.+-+||+||+...... .++-++.+++++    ..+|++.+...
T Consensus        84 ~E~il~l~PDvVi~~~~~~~~~~~~~~~~~l~~----~GIpVv~~~~~  127 (342)
T cd01139          84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQ----AGIPVVFVDFR  127 (342)
T ss_pred             HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH----CCCCEEEEECC
T ss_conf             999962199889994434565445679999997----19988999468


No 456
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=26.67  E-value=55  Score=14.91  Aligned_cols=62  Identities=21%  Similarity=0.232  Sum_probs=40.0

Q ss_pred             HHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE
Q ss_conf             999982799899995041296-95999999982857689959999924998999999976998899
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEI-SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI  103 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~-dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l  103 (123)
                      .+.+.+.-.|+|++|..=-.. .-.++++.||+.  +.++|||+ -+-...+-.+...++|++...
T Consensus        99 ~~~l~~ag~d~i~IDvAhG~~~~~~~~ik~ir~~--~p~~~Iia-GNV~T~e~a~~L~~~GaD~vk  161 (325)
T cd00381          99 AEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK--YPNVDVIA-GNVVTAEAARDLIDAGADGVK  161 (325)
T ss_pred             HHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHH--CCCCCEEE-CCCCCHHHHHHHHHCCCCEEE
T ss_conf             9999976998999870003458899999999976--89975686-456689999999866998999


No 457
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=26.53  E-value=31  Score=16.33  Aligned_cols=15  Identities=7%  Similarity=0.069  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             899999999999789
Q gi|254780476|r   12 ELNMKLFRDLIETSG   26 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g   26 (123)
                      ...++.+...+...|
T Consensus        16 ~~~~~~LA~kI~~~~   30 (156)
T PRK09177         16 HRDARALAWRLLPAG   30 (156)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999998508


No 458
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161    Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).   Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis.   For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=26.49  E-value=16  Score=17.94  Aligned_cols=106  Identities=19%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCHHHHHHHHH------HCCCCE----E----EEEEECCCCC---HH--------HHHHH
Q ss_conf             9999999999978989999889799999998------279989----9----9950412969---59--------99999
Q gi|254780476|r   13 LNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDV----I----IMDIQLQEIS---GL--------EITKQ   67 (123)
Q Consensus        13 ~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~------~~~~dl----i----llD~~mp~~d---G~--------el~~~   67 (123)
                      .....+...|+.+.+.-...=-|-||++.+.      ++.|.+    +    -++=|.|+-+   |.        +.|-.
T Consensus       486 ~d~~~iA~~f~~~kiDgL~IIGGFEAf~al~qL~~aR~~YP~F~IPmv~iPATISNNVPGTe~SLG~DTaLN~i~~~cD~  565 (777)
T TIGR02478       486 KDLGEIAYKFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDK  565 (777)
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             53899999998609887999760368899999999986188557885786660107787244302201577789987263


Q ss_pred             HHHCCCCCCCCEEEEEEC-CCHHHH--HHHHHCCCCE--EEECCCCHHHHHHHHHH
Q ss_conf             982857689959999924-998999--9999769988--99879898999999999
Q gi|254780476|r   68 IKEDSELQEIPVIAVTAF-AMKGDE--ERIRKGGCEA--YISKPISLSIFMETIKK  118 (123)
Q Consensus        68 ir~~~~~~~ipii~~t~~-~~~~~~--~~~~~~g~~~--~l~KPi~~~~L~~~i~~  118 (123)
                      ||+...-++-.+.++=.. ...++.  .-.+..|++.  .---||+.+.|-+-|..
T Consensus       566 IkqSA~askrRvFVvEtmGG~sGYLAt~~GLa~GA~a~Yi~Eegi~l~~L~~Di~~  621 (777)
T TIGR02478       566 IKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGISLKDLQEDIEH  621 (777)
T ss_pred             CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             22353011475699997089716899999886462478864789788999999999


No 459
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=26.48  E-value=56  Score=14.89  Aligned_cols=68  Identities=26%  Similarity=0.295  Sum_probs=36.7

Q ss_pred             EEECCHHHHHHHHHHCCCCEEEEEEECC-------CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             9988979999999827998999950412-------969599999998285768995999992499899999997699889
Q gi|254780476|r   30 LQTRNGMEALELARQHKPDVIIMDIQLQ-------EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        30 ~~a~~g~eal~~l~~~~~dlillD~~mp-------~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      .++.+-.++.+ +.+...|.+++.--.|       .--|++.++++++..   ++||+++-| -......++.+.|++++
T Consensus       100 ~S~h~~~e~~~-a~~~gaDYi~~gpvf~T~sK~~~~~~g~~~~~~~~~~~---~~Pv~AiGG-I~~~n~~~~~~~Ga~gv  174 (180)
T pfam02581       100 VSTHTLEEALE-AEALGADYIGFGPVFPTPTKPDAPPLGLEGLRAIAEAV---NIPVVAIGG-ITPENVPEVLEAGADGV  174 (180)
T ss_pred             ECCCCHHHHHH-HHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECC-CCHHHHHHHHHCCCCEE
T ss_conf             44788999999-98719980887476777999998878989999999858---999999909-89999999998599889


No 460
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.41  E-value=56  Score=14.89  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             89959999924998999999976998899879898999999999740
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG  121 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~  121 (123)
                      ..+|+|+ |....   ..+....|.++|+..|-+.++|.++|.+++.
T Consensus       293 ~G~PvIa-t~~gg---~~e~v~~g~~G~l~~~~d~~~la~~i~~ll~  335 (371)
T cd04962         293 CGVPVVA-SNAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE  335 (371)
T ss_pred             CCCCEEE-CCCCC---HHHHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf             6994998-68998---3899708971899789999999999999976


No 461
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.17  E-value=56  Score=14.86  Aligned_cols=47  Identities=17%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             9999999828576899599999249------9899999997699889987989899
Q gi|254780476|r   62 LEITKQIKEDSELQEIPVIAVTAFA------MKGDEERIRKGGCEAYISKPISLSI  111 (123)
Q Consensus        62 ~el~~~ir~~~~~~~ipii~~t~~~------~~~~~~~~~~~g~~~~l~KPi~~~~  111 (123)
                      |++++++|+.   .++|+++++.++      .+....++.+.|+++.+.--+.+++
T Consensus        74 f~~~~~~r~~---~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE  126 (256)
T PRK13111         74 LELLREIRAK---PTIPIVLMTYYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEE  126 (256)
T ss_pred             HHHHHHHHCC---CCCCEEEEEECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             9999998606---8998899850308987099999999997599779816999788


No 462
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.91  E-value=57  Score=14.83  Aligned_cols=101  Identities=10%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             CEEEEECCCHH---HHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEE-CCCCCH--HHHHHHHHHCCCCC
Q ss_conf             77899539989---9999999999789899998897999999982-79989999504-129695--99999998285768
Q gi|254780476|r    3 KKVMIVEDNEL---NMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQ-LQEISG--LEITKQIKEDSELQ   75 (123)
Q Consensus         3 kkiLiVDD~~~---~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~-~~~dlillD~~-mp~~dG--~el~~~ir~~~~~~   75 (123)
                      ++|-+|--|..   -.+.++.+=.-.|+.+..+.+..+--..+.. ...++||+|.- |...|-  .+-++.++..... 
T Consensus       379 ~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l~~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~-  457 (557)
T PRK12727        379 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQV-  457 (557)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCC-
T ss_conf             8189997266408799999999998397579828999999999983699989994999884699999999987514776-


Q ss_pred             CCCEEEEEECCCHHHHHHHH----HCCCCEE-EEC
Q ss_conf             99599999249989999999----7699889-987
Q gi|254780476|r   76 EIPVIAVTAFAMKGDEERIR----KGGCEAY-ISK  105 (123)
Q Consensus        76 ~ipii~~t~~~~~~~~~~~~----~~g~~~~-l~K  105 (123)
                       -.++++++.....+.....    ..+.+++ ++|
T Consensus       458 -~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TK  491 (557)
T PRK12727        458 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTK  491 (557)
T ss_pred             -CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             -3599996889989999999985379987489961


No 463
>pfam01497 Peripla_BP_2 Periplasmic binding protein. This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport.
Probab=25.61  E-value=58  Score=14.80  Aligned_cols=74  Identities=12%  Similarity=0.090  Sum_probs=36.7

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             99998279989999504129695999999982857689959999924998999999976998899879898999999999
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      ++.+..-.||+|+.+.....   -+....+++    ..+|++.+.......+..+.++. +-..+.++=..+++...+++
T Consensus        53 ~E~i~~l~PDlVi~~~~~~~---~~~~~~~~~----~gipvv~~~~~~~~~~~~~~i~~-lg~~~g~~~~a~~~~~~~~~  124 (236)
T pfam01497        53 VEKLAALKPDLIIGSAGIGL---TDKAYELLS----LIIPTVIFESSSTGEGILEQIRA-LGELLGLEDEAEELVAELDS  124 (236)
T ss_pred             HHHHHHCCCCEEEEECCCCC---HHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHH
T ss_conf             99997159998997267673---689999995----79978994289998999999999-99996981789999999999


Q ss_pred             HH
Q ss_conf             74
Q gi|254780476|r  119 YI  120 (123)
Q Consensus       119 ~l  120 (123)
                      .+
T Consensus       125 ~~  126 (236)
T pfam01497       125 AI  126 (236)
T ss_pred             HH
T ss_conf             99


No 464
>PRK07102 short chain dehydrogenase; Provisional
Probab=25.52  E-value=58  Score=14.79  Aligned_cols=42  Identities=17%  Similarity=0.152  Sum_probs=32.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf             877899539989999999999978989999889799999998
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR   43 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~   43 (123)
                      ||+|||.=-+.-.=..+...|...|+.+..+.-..+.++.+.
T Consensus         1 MK~vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~   42 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDTERLERIA   42 (243)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf             997999157459999999999987998999989889999999


No 465
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=25.38  E-value=58  Score=14.77  Aligned_cols=95  Identities=16%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHH---HHHHHHCCCCEEEEE------------------E-ECCCCCHHH
Q ss_conf             9539989999999999978989999-8897999---999982799899995------------------0-412969599
Q gi|254780476|r    7 IVEDNELNMKLFRDLIETSGYIALQ-TRNGMEA---LELARQHKPDVIIMD------------------I-QLQEISGLE   63 (123)
Q Consensus         7 iVDD~~~~~~~l~~~l~~~g~~v~~-a~~g~ea---l~~l~~~~~dlillD------------------~-~mp~~dG~e   63 (123)
                      +.-++.....-+.+.|-..|+.+.+ .-+...|   ++.++++.|++++==                  + ..|+. --+
T Consensus        10 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t~~a~~~i~~l~~~~~~~~iGaGTV~~~~~~~~a~~aGa~FivsP~~-~~~   88 (190)
T cd00452          10 LRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL-DPE   88 (190)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCC-CHH
T ss_conf             9779999999999999986998899967880299999999986898089652347799999999859989973779-999


Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf             999998285768995999992499899999997699889987989
Q gi|254780476|r   64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS  108 (123)
Q Consensus        64 l~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~  108 (123)
                      +++.-++.    ++|.+  .+-..+.+..++++.|++-.-.=|.+
T Consensus        89 v~~~a~~~----~~~~i--PGv~TpsEi~~A~~~G~~~vK~FPa~  127 (190)
T cd00452          89 VVKAANRA----GIPLL--PGVATPTEIMQALELGADIVKLFPAE  127 (190)
T ss_pred             HHHHHHHC----CCCEE--CCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf             99999982----99665--78799999999998799989989551


No 466
>cd01143 YvrC Periplasmic binding protein YvrC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.36  E-value=58  Score=14.77  Aligned_cols=72  Identities=21%  Similarity=0.263  Sum_probs=36.2

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             9999827998999950412969599999998285768995999992499-899999997699889987989899999999
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAYISKPISLSIFMETIK  117 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~-~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~  117 (123)
                      ++.+..-+||+|+.....    +-+..+.+++    ..+|++.+..... .+........|-  .+.|+=+.+++.+.++
T Consensus        53 ~E~i~~l~PDLVi~~~~~----~~~~~~~L~~----~gi~v~~~~~~~~~~~~~~~i~~lg~--i~g~~~~A~~l~~~~~  122 (195)
T cd01143          53 VEKIVALKPDLVIVSSSS----LAELLEKLKD----AGIPVVVLPAASSLDEIYDQIELIGK--ITGAEEEAEKLVKEMK  122 (195)
T ss_pred             HHHHHCCCCCEEEEECCC----CHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH
T ss_conf             999961699999982787----4779999864----18859997589999999999999999--9697477999999999


Q ss_pred             HHH
Q ss_conf             974
Q gi|254780476|r  118 KYI  120 (123)
Q Consensus       118 ~~l  120 (123)
                      +.+
T Consensus       123 ~~~  125 (195)
T cd01143         123 QKI  125 (195)
T ss_pred             HHH
T ss_conf             999


No 467
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.35  E-value=58  Score=14.77  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=38.5

Q ss_pred             CHHHHHHH---HHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             98999999---999997898999988979------999999827998999950412969599999998285768995999
Q gi|254780476|r   11 NELNMKLF---RDLIETSGYIALQTRNGM------EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        11 ~~~~~~~l---~~~l~~~g~~v~~a~~g~------eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~   81 (123)
                      |+...+++   .+.++..||.+..+.+..      +.++.+.+..+|-|++-   |..+..+.... +.    ..+|+|+
T Consensus        11 npf~~~i~~gi~~~~~~~gy~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~~---~~~~~~~~~~~-~~----~~~P~V~   82 (263)
T cd06280          11 NPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFA---PTRATLRRLAE-LR----LSFPVVL   82 (263)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHH-HC----CCCCEEE
T ss_conf             7899999999999999869989999789998999999999981698799987---88787679999-70----8996899


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   82 VT   83 (123)
Q Consensus        82 ~t   83 (123)
                      +.
T Consensus        83 id   84 (263)
T cd06280          83 ID   84 (263)
T ss_pred             EC
T ss_conf             92


No 468
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=25.29  E-value=48  Score=15.27  Aligned_cols=16  Identities=38%  Similarity=0.368  Sum_probs=7.0

Q ss_pred             CEEEEECCCHHHHHHH
Q ss_conf             7789953998999999
Q gi|254780476|r    3 KKVMIVEDNELNMKLF   18 (123)
Q Consensus         3 kkiLiVDD~~~~~~~l   18 (123)
                      ||||||||=....+.+
T Consensus        88 kkVLIVDDI~DTG~Tl  103 (192)
T COG2236          88 KKVLIVDDIVDTGETL  103 (192)
T ss_pred             CEEEEEECCCCCHHHH
T ss_conf             8589982333761769


No 469
>PRK08006 replicative DNA helicase; Provisional
Probab=25.26  E-value=59  Score=14.76  Aligned_cols=68  Identities=21%  Similarity=0.347  Sum_probs=38.1

Q ss_pred             HHHHHHCCCEEEEEC--CHHHH----HHHHHHC-CCCEEEEEEE--C--CCCCH------HHHHHHHHHCCCCCCCCEEE
Q ss_conf             999997898999988--97999----9999827-9989999504--1--29695------99999998285768995999
Q gi|254780476|r   19 RDLIETSGYIALQTR--NGMEA----LELARQH-KPDVIIMDIQ--L--QEISG------LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        19 ~~~l~~~g~~v~~a~--~g~ea----l~~l~~~-~~dlillD~~--m--p~~dG------~el~~~ir~~~~~~~ipii~   81 (123)
                      ...++.+.+.+....  +-.+-    .++.+++ ..++|++|+-  |  |...+      -++.+.+|....--++|||+
T Consensus       302 ~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~~~~r~~ei~~isr~lK~lAkel~ipVi~  381 (471)
T PRK08006        302 GILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVA  381 (471)
T ss_pred             HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             99975188577368999899999999999986489868996388661678744106689999999999999996996899


Q ss_pred             EEECC
Q ss_conf             99249
Q gi|254780476|r   82 VTAFA   86 (123)
Q Consensus        82 ~t~~~   86 (123)
                      ++=-+
T Consensus       382 LsQLn  386 (471)
T PRK08006        382 LSQLN  386 (471)
T ss_pred             ECCCC
T ss_conf             70168


No 470
>PRK13555 azoreductase; Provisional
Probab=25.25  E-value=59  Score=14.76  Aligned_cols=12  Identities=33%  Similarity=0.609  Sum_probs=10.1

Q ss_pred             CCEEEEECCCHH
Q ss_conf             877899539989
Q gi|254780476|r    2 LKKVMIVEDNEL   13 (123)
Q Consensus         2 ~kkiLiVDD~~~   13 (123)
                      |+|||.|+-++.
T Consensus         1 M~kiL~I~aS~r   12 (208)
T PRK13555          1 MSKVLFVKANDR   12 (208)
T ss_pred             CCEEEEEECCCC
T ss_conf             982799977899


No 471
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=24.99  E-value=59  Score=14.73  Aligned_cols=45  Identities=29%  Similarity=0.400  Sum_probs=27.7

Q ss_pred             HHHHHHHHHCCCEEEEECCHHHHHH---HHHHCCCCEEEEEEE-CCCCC
Q ss_conf             9999999978989999889799999---998279989999504-12969
Q gi|254780476|r   16 KLFRDLIETSGYIALQTRNGMEALE---LARQHKPDVIIMDIQ-LQEIS   60 (123)
Q Consensus        16 ~~l~~~l~~~g~~v~~a~~g~eal~---~l~~~~~dlillD~~-mp~~d   60 (123)
                      +.++...+.-.=.+.|+.+|-.|.+   .+++.-.|+|++|.. +|..+
T Consensus       105 ~~~~~~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dVIVtDHHC~~~~~  153 (705)
T TIGR00644       105 EALRELKENGVSLIITVDNGISAHEEIEYAKELGIDVIVTDHHCLPPET  153 (705)
T ss_pred             HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             9999998669839998268742699999998669819997256798489


No 472
>PRK05973 replicative DNA helicase; Provisional
Probab=24.94  E-value=59  Score=14.72  Aligned_cols=41  Identities=7%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             CCCCEEEEEEE--CCCCCHH-HH---HHHHHHCCCCCCCCEEEEEEC
Q ss_conf             79989999504--1296959-99---999982857689959999924
Q gi|254780476|r   45 HKPDVIIMDIQ--LQEISGL-EI---TKQIKEDSELQEIPVIAVTAF   85 (123)
Q Consensus        45 ~~~dlillD~~--mp~~dG~-el---~~~ir~~~~~~~ipii~~t~~   85 (123)
                      +..++|++||-  |-..+.. |+   .+.+|...+-..+|||++|=-
T Consensus       146 ~~~~LIVIDYLQLM~~~r~~~eiseisRsLK~lAkEl~vPVvaLSQL  192 (237)
T PRK05973        146 PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARKRGVILVFISQI  192 (237)
T ss_pred             CCCCEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             89968999767752667788668999999999999869939994003


No 473
>PRK08840 replicative DNA helicase; Provisional
Probab=24.76  E-value=60  Score=14.71  Aligned_cols=66  Identities=23%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             HHHHCCCEEEEECC--HHH----HHHHHHHC-CCCEEEEEEE--C--CCCCH------HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             99978989999889--799----99999827-9989999504--1--29695------9999999828576899599999
Q gi|254780476|r   21 LIETSGYIALQTRN--GME----ALELARQH-KPDVIIMDIQ--L--QEISG------LEITKQIKEDSELQEIPVIAVT   83 (123)
Q Consensus        21 ~l~~~g~~v~~a~~--g~e----al~~l~~~-~~dlillD~~--m--p~~dG------~el~~~ir~~~~~~~ipii~~t   83 (123)
                      +.+...+.+....+  -.+    +.++.+.+ ..++|++|+-  |  |+..+      -++.+.+|....--++|||+++
T Consensus       297 ~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~~~~r~~~i~~isr~lK~lAkel~vpVv~ls  376 (464)
T PRK08840        297 LMEKKNMYIDDSSGLTPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPALQDNRTLEIAEISRSLKALAKELNVPVVALS  376 (464)
T ss_pred             HHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             98479958856998757999999999998648987899618866067886403678999999999999999699899963


Q ss_pred             ECC
Q ss_conf             249
Q gi|254780476|r   84 AFA   86 (123)
Q Consensus        84 ~~~   86 (123)
                      =-+
T Consensus       377 QLn  379 (464)
T PRK08840        377 QLN  379 (464)
T ss_pred             CCC
T ss_conf             168


No 474
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import.  Responsible for energy coupling to the transport system.  The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.73  E-value=60  Score=14.70  Aligned_cols=74  Identities=16%  Similarity=0.183  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCCE------EEEECCHHH---HHHHHHHCCCCEEEEEEECCCCCH---HHHHHHHHHCCCCCCCCE
Q ss_conf             89999999999978989------999889799---999998279989999504129695---999999982857689959
Q gi|254780476|r   12 ELNMKLFRDLIETSGYI------ALQTRNGME---ALELARQHKPDVIIMDIQLQEISG---LEITKQIKEDSELQEIPV   79 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g~~------v~~a~~g~e---al~~l~~~~~dlillD~~mp~~dG---~el~~~ir~~~~~~~ipi   79 (123)
                      ....+...++|+..|..      ..+.+.|+.   |+..+-...|+++++|=-....|-   .++...|++...-..+.+
T Consensus       111 ~e~~~rv~~~l~~v~l~~~~~~~p~eLSGGq~QRVaiARAl~~~P~vlllDEP~s~LD~~~~~~i~~~l~~l~~e~~~T~  190 (239)
T cd03296         111 AEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT  190 (239)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf             99999999998654997677489666999898999999987649998997388664699999999999999999859989


Q ss_pred             EEEEEC
Q ss_conf             999924
Q gi|254780476|r   80 IAVTAF   85 (123)
Q Consensus        80 i~~t~~   85 (123)
                      |++|..
T Consensus       191 i~vTHd  196 (239)
T cd03296         191 VFVTHD  196 (239)
T ss_pred             EEECCC
T ss_conf             999889


No 475
>PRK13136 consensus
Probab=24.66  E-value=60  Score=14.69  Aligned_cols=45  Identities=16%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCC-----HHHHHHHHHCCCCEEEECCCCHH
Q ss_conf             9999998285768995999992499-----89999999769988998798989
Q gi|254780476|r   63 EITKQIKEDSELQEIPVIAVTAFAM-----KGDEERIRKGGCEAYISKPISLS  110 (123)
Q Consensus        63 el~~~ir~~~~~~~ipii~~t~~~~-----~~~~~~~~~~g~~~~l~KPi~~~  110 (123)
                      ++++.+|+   ..++|++++|.++.     +....++.++|+++.+.--+..+
T Consensus        78 ~~v~~~r~---~~~~pivlM~Y~N~i~~~G~~f~~~~~~~GvdGlIipDLP~e  127 (253)
T PRK13136         78 TLITSFRQ---HSEIPIILFTYFNPLLAAGDKIYQQMKSAGVDGCLVVDLPVE  127 (253)
T ss_pred             HHHHHHCC---CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHH
T ss_conf             99998225---789888998651799997999999999749872006789977


No 476
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.63  E-value=60  Score=14.69  Aligned_cols=113  Identities=14%  Similarity=0.026  Sum_probs=64.8

Q ss_pred             CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             7789-953998---99999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVM-IVEDNE---LNMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiL-iVDD~~---~~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      |||- +.+|+.   ...+.+...++..|.++...       .+-...+..+++..||+|++-.  ..-++..++++.|+.
T Consensus       138 kkvail~~~~~yG~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~~pD~v~~~~--~~~~~~~~~kq~~~~  215 (312)
T cd06346         138 KSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIG--YPETGSGILRSAYEQ  215 (312)
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf             648999957726699999999999987998999996699984559999999866999999946--734799999999975


Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHCCCC-EEEECCCCH----HHHHHHHHHH
Q ss_conf             57689959999924998999999976998-899879898----9999999997
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGDEERIRKGGCE-AYISKPISL----SIFMETIKKY  119 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~~~~~~~~g~~-~~l~KPi~~----~~L~~~i~~~  119 (123)
                      .  -..|++.-++...+......-...+. -|..-|...    +.|.+.-++.
T Consensus       216 G--~~~~~~~~~g~~~~~~~~~~g~~~~~g~~~~~p~~~~~~~~~F~~~y~~~  266 (312)
T cd06346         216 G--LFDKFLLTDGMKSDSFLPADGGYILAGSYGTSPGAGGPGLEAFTSAYKAA  266 (312)
T ss_pred             C--CCCCEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9--99977964455687899987799748568927799987999999999998


No 477
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. 
Probab=24.62  E-value=60  Score=14.69  Aligned_cols=44  Identities=16%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             899599999249989999999769988998798989999999997403
Q gi|254780476|r   75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE  122 (123)
Q Consensus        75 ~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~  122 (123)
                      ..+|||. |..+.   ..+....|-++|+.+|-++++|.+.+.+.+..
T Consensus       298 ~G~PvI~-t~~gg---~~e~i~~~~~G~l~~~~d~~~l~~~i~~l~~~  341 (374)
T cd03801         298 AGLPVVA-SDVGG---IPEVVEDGETGLLVPPGDPEALAEAILRLLDD  341 (374)
T ss_pred             CCCCEEE-CCCCC---HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf             6998999-78997---58885189718997899999999999999779


No 478
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.56  E-value=60  Score=14.68  Aligned_cols=107  Identities=14%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHCCCEEE--E-ECCHHHHHHHHHHCCCCEEEEEEECCCCCH-------HHHHHHHHHCCCCCCCCEEE
Q ss_conf             8999999999997898999--9-889799999998279989999504129695-------99999998285768995999
Q gi|254780476|r   12 ELNMKLFRDLIETSGYIAL--Q-TRNGMEALELARQHKPDVIIMDIQLQEISG-------LEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        12 ~~~~~~l~~~l~~~g~~v~--~-a~~g~eal~~l~~~~~dlillD~~mp~~dG-------~el~~~ir~~~~~~~ipii~   81 (123)
                      +...+.+...++..|....  . -.+..+-++.+.......|-+  .+-+.+|       -+..+++|+..  .++||.+
T Consensus       118 ~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~gFvY~--~~~gvTG~~~~~~~~~~i~~ik~~~--~~~Pv~v  193 (247)
T PRK13125        118 PDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSPLFIYL--GLYPATGVELPVYVERNIKRVRELV--GDVYLVA  193 (247)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE--EEECCCCCCCCCCHHHHHHHHHHHC--CCCCEEE
T ss_conf             67899999999976984699957998199999999868977999--9443678877325999999999856--9998588


Q ss_pred             EEECCCHHHHHHHHHCCCCEEEECC----------C-CHHHHHHHHHHHHHC
Q ss_conf             9924998999999976998899879----------8-989999999997403
Q gi|254780476|r   82 VTAFAMKGDEERIRKGGCEAYISKP----------I-SLSIFMETIKKYIGE  122 (123)
Q Consensus        82 ~t~~~~~~~~~~~~~~g~~~~l~KP----------i-~~~~L~~~i~~~l~~  122 (123)
                      =-|-..+++..+..+.|+|+.+.--          . ....+...++++|++
T Consensus       194 GFGI~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~~~v~~l~~al~e  245 (247)
T PRK13125        194 GFAIDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEALSLLKEIRGALDE  245 (247)
T ss_pred             ECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             3287999999999855899999878999999976989999999999999852


No 479
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38  E-value=53  Score=15.01  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHH-CCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             87789953998999999999997-8989999---8897999999982799899995041296959999999828576899
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIET-SGYIALQ---TRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI   77 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~-~g~~v~~---a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~i   77 (123)
                      .||+-|||........+...=+. .|..+..   +.-.+--+.+++++.|++|++|--    .-.+=+..++..-. .-+
T Consensus       170 ~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEI----Gt~~d~~A~~ta~~-~GV  244 (308)
T COG3854         170 PKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEI----GTEEDALAILTALH-AGV  244 (308)
T ss_pred             CCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECC----CCHHHHHHHHHHHH-CCC
T ss_conf             7328997150043034358860323221010465617888999999549957998343----64777999999985-485


Q ss_pred             CEEEEEECCC
Q ss_conf             5999992499
Q gi|254780476|r   78 PVIAVTAFAM   87 (123)
Q Consensus        78 pii~~t~~~~   87 (123)
                      .+ +.|++.+
T Consensus       245 kl-i~TaHG~  253 (308)
T COG3854         245 KL-ITTAHGN  253 (308)
T ss_pred             EE-EEEECCC
T ss_conf             89-9950441


No 480
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=24.30  E-value=61  Score=14.65  Aligned_cols=57  Identities=11%  Similarity=0.092  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             96959999999828576899599999249989999999769988998798989999999997
Q gi|254780476|r   58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY  119 (123)
Q Consensus        58 ~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~  119 (123)
                      .-+--+..+++|+    ..+.++|+||-.......-+.+.|+++|+.. ..|++=++.|++.
T Consensus       452 Rp~a~eaI~~Lr~----~GI~vvMITGDn~~TA~aIA~elGIDd~~A~-~tPedKl~iVk~L  508 (684)
T PRK01122        452 KPGIKERFAQLRK----MGIKTVMITGDNPLTAAAIAAEAGVDDFLAE-ATPEDKLALIRQE  508 (684)
T ss_pred             CHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHCCHHHHHC-CCHHHHHHHHHHH
T ss_conf             7549999999998----7992999989896999999998495655657-9999999999999


No 481
>PRK01659 consensus
Probab=24.27  E-value=61  Score=14.65  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             HHHHHHHHCCC-CEEEEEEECCCC-CH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH-CCCCEEEE------C
Q ss_conf             99999982799-899995041296-95--99999998285768995999992499899999997-69988998------7
Q gi|254780476|r   37 EALELARQHKP-DVIIMDIQLQEI-SG--LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK-GGCEAYIS------K  105 (123)
Q Consensus        37 eal~~l~~~~~-dlillD~~mp~~-dG--~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~-~g~~~~l~------K  105 (123)
                      +.++.+.+... .+++.|+.-.++ .|  +++++.+++.   .++|+|+-.+-...++..++++ .++++.+.      +
T Consensus       157 ~~i~~~~~~g~geil~tdI~rDG~~~G~dl~l~~~i~~~---~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~~  233 (252)
T PRK01659        157 AWAKEAVRLGAGEILLTSMDADGTKNGFDLRLTKAISEA---VSVPVIASGGAGNADHMVEVFQKTTADAALAASIFHYG  233 (252)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf             999999976997799998814585476898999999986---89999999179999999999974898265575477779


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             9898999999999
Q gi|254780476|r  106 PISLSIFMETIKK  118 (123)
Q Consensus       106 Pi~~~~L~~~i~~  118 (123)
                      -+++.++.+.+++
T Consensus       234 ~~sl~e~k~~L~~  246 (252)
T PRK01659        234 ETSIKEVKAKLRE  246 (252)
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9999999999998


No 482
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=24.26  E-value=61  Score=14.65  Aligned_cols=61  Identities=15%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             HCCCCEEEEEEECCC----CCH----------HHHHHHHHHCCCCCCCCEEEEEECCCHHHHH----HHHHCCCC--EEE
Q ss_conf             279989999504129----695----------9999999828576899599999249989999----99976998--899
Q gi|254780476|r   44 QHKPDVIIMDIQLQE----ISG----------LEITKQIKEDSELQEIPVIAVTAFAMKGDEE----RIRKGGCE--AYI  103 (123)
Q Consensus        44 ~~~~dlillD~~mp~----~dG----------~el~~~ir~~~~~~~ipii~~t~~~~~~~~~----~~~~~g~~--~~l  103 (123)
                      ...|.+=++-+.+|.    ..|          -|..+..++.....++|-|++|+.-....-.    -+.++|++  +||
T Consensus       196 ~~~ygvDvlKvE~Pvn~~~veg~~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~A~~aGasf~G~L  275 (326)
T PRK04161        196 DKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLYFAAEAGAQFNGVL  275 (326)
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             44569977985267760010245766541369999999999873539997998399998999999999998699845676


Q ss_pred             E
Q ss_conf             8
Q gi|254780476|r  104 S  104 (123)
Q Consensus       104 ~  104 (123)
                      -
T Consensus       276 ~  276 (326)
T PRK04161        276 C  276 (326)
T ss_pred             E
T ss_conf             5


No 483
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.23  E-value=61  Score=14.64  Aligned_cols=66  Identities=21%  Similarity=0.304  Sum_probs=33.4

Q ss_pred             CCHHHHHHHH---HHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             9989999999---9999789899998897------999999982799899995041296959999999828576899599
Q gi|254780476|r   10 DNELNMKLFR---DLIETSGYIALQTRNG------MEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVI   80 (123)
Q Consensus        10 D~~~~~~~l~---~~l~~~g~~v~~a~~g------~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii   80 (123)
                      +|+...++++   ..+...||.+..+.++      .+.++.+.++.+|-|++--.-+   --+..+.+++    ..+|+|
T Consensus        10 ~npf~~~i~~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDgiIl~~~~~---~~~~~~~~~~----~~iPvV   82 (267)
T cd06283          10 TNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGN---NKELYQRLAK----NGKPVV   82 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC---CHHHHHHHHH----CCCCEE
T ss_conf             759999999999999998699899997899989999999999966999999858779---9899999997----699899


Q ss_pred             EE
Q ss_conf             99
Q gi|254780476|r   81 AV   82 (123)
Q Consensus        81 ~~   82 (123)
                      .+
T Consensus        83 ~i   84 (267)
T cd06283          83 LV   84 (267)
T ss_pred             EE
T ss_conf             96


No 484
>KOG2550 consensus
Probab=24.08  E-value=62  Score=14.63  Aligned_cols=96  Identities=26%  Similarity=0.378  Sum_probs=62.6

Q ss_pred             EEEEECCCHHHHHHHH--HHHHHCCCE---------------EEEECCHHHHHHHHHHCCCCEEEEEEECCC-CCHHHHH
Q ss_conf             7899539989999999--999978989---------------999889799999998279989999504129-6959999
Q gi|254780476|r    4 KVMIVEDNELNMKLFR--DLIETSGYI---------------ALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLEIT   65 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~--~~l~~~g~~---------------v~~a~~g~eal~~l~~~~~dlillD~~mp~-~dG~el~   65 (123)
                      |..||||+-....++.  ++.++.+|-               +-+-++.++-++++.+--.|+|++|..=-. .--++..
T Consensus       204 kl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi  283 (503)
T KOG2550         204 KLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI  283 (503)
T ss_pred             CCCEECCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf             65234367762334333456650278755567541356510136663016778886634886899966888504579999


Q ss_pred             HHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             9998285768995999992499899999997699889
Q gi|254780476|r   66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        66 ~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +.||+  .+.++.||. ..-......++.+.+|+++.
T Consensus       284 k~iK~--~yP~l~Via-GNVVT~~qa~nLI~aGaDgL  317 (503)
T KOG2550         284 KYIKE--TYPDLQIIA-GNVVTKEQAANLIAAGADGL  317 (503)
T ss_pred             HHHHH--HCCCCEEEC-CCEEEHHHHHHHHHCCCCEE
T ss_conf             99986--688863431-65533888999987367605


No 485
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=24.06  E-value=62  Score=14.63  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=42.1

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             799899995041296959999999828576899599999249989999999769988998798989999999
Q gi|254780476|r   45 HKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI  116 (123)
Q Consensus        45 ~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i  116 (123)
                      ...|++++.-.+|.--..+++.++-+.-+.+..++++=++   .......++.++.-++.|| +..+|.+.+
T Consensus       125 ~~~d~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD~s---g~~L~~~l~~~~~P~lIKP-N~~El~~l~  192 (309)
T PRK13508        125 EKVEVVAISGSLPAGLPQDYYAQLIELANNKGKKVVLDCS---GAALQAVLKSPYKPTVIKP-NIEELSQLL  192 (309)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHCCCCCCEECC-CHHHHHHHH
T ss_conf             5599999968889999859999999999855998999897---6999999846577727745-989999983


No 486
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.00  E-value=62  Score=14.62  Aligned_cols=86  Identities=15%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEE-EEEEECCC-CCHH----------HHHHHHH
Q ss_conf             8778995399899999999999789899998897999999982799899-99504129-6959----------9999998
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVI-IMDIQLQE-ISGL----------EITKQIK   69 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dli-llD~~mp~-~dG~----------el~~~ir   69 (123)
                      +.++|++|-|...-+++.+..  .|.+      -...-+.+.++++|++ ++|..-|- -||+          ++-..++
T Consensus       302 AnklLFcDTD~ltT~vyse~Y--~g~~------~P~l~~~a~~~~yDL~Lll~~DvpwVdDGlRd~~~~~~R~~f~~~lk  373 (411)
T PRK08099        302 ANKVAFIDTDFVTTQAFCKKY--EGRE------HPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKRFQNLLV  373 (411)
T ss_pred             CCCEEEEECCHHHHHHHHHHH--CCCC------CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             597699838499999999997--3899------88999998635877899808998755678766678889999999999


Q ss_pred             HCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf             28576899599999249989999999
Q gi|254780476|r   70 EDSELQEIPVIAVTAFAMKGDEERIR   95 (123)
Q Consensus        70 ~~~~~~~ipii~~t~~~~~~~~~~~~   95 (123)
                      +.-.-.++|-+.+-+-+..+..+++.
T Consensus       374 ~lL~k~ni~yv~I~~~~y~eR~~kAi  399 (411)
T PRK08099        374 EMLEENNIEYVRVESPDYDARFLRCV  399 (411)
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf             99998199769971788899999999


No 487
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=23.95  E-value=62  Score=14.61  Aligned_cols=46  Identities=17%  Similarity=0.107  Sum_probs=21.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCE--EEE-ECCHHHHHHHHHHCCCCEEEE
Q ss_conf             7899539989999999999978989--999-889799999998279989999
Q gi|254780476|r    4 KVMIVEDNELNMKLFRDLIETSGYI--ALQ-TRNGMEALELARQHKPDVIIM   52 (123)
Q Consensus         4 kiLiVDD~~~~~~~l~~~l~~~g~~--v~~-a~~g~eal~~l~~~~~dlill   52 (123)
                      +|.-+|=++...++.+......|..  +.. .++   .++.+...+||+|+.
T Consensus       147 ~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D---~~~~~~~~~fDlIVS  195 (284)
T TIGR03533       147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSD---LFAALPGRKYDLIVS  195 (284)
T ss_pred             EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC---HHHHCCCCCCCEEEE
T ss_conf             7999989999999999999860854336888351---433145777787997


No 488
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=23.91  E-value=62  Score=14.61  Aligned_cols=101  Identities=13%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH-HHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC-CCCCCCE
Q ss_conf             877899539989999999999978989999889799999-99827998999950412969599999998285-7689959
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGLEITKQIKEDS-ELQEIPV   79 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~-~l~~~~~dlillD~~mp~~dG~el~~~ir~~~-~~~~ipi   79 (123)
                      .+.+.+||-++..++.-+.+++...-. .......+... ...-.+.|+|++.+.+-++..-+-...+++.= .+.  .+
T Consensus        59 l~~~~~vd~s~~m~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~DLVi~sy~L~El~~~~R~~~v~~LW~~~~--g~  135 (275)
T pfam09243        59 LEPATVIDASEAALAIGEELARHIPAL-KHAWRARDVIGAALDFEPADLVTISYVLDELTPASREKVIDNLWAKAA--QA  135 (275)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCC-CCCEECCCCCCCCCCCCCCCEEEEECHHCCCCHHHHHHHHHHHHHHCC--CE
T ss_conf             768999748999999999998518434-543111431011245898788996142207997899999999999539--97


Q ss_pred             EEEEECCCHHH-------HHHHHHCCCCEEEECCC
Q ss_conf             99992499899-------99999769988998798
Q gi|254780476|r   80 IAVTAFAMKGD-------EERIRKGGCEAYISKPI  107 (123)
Q Consensus        80 i~~t~~~~~~~-------~~~~~~~g~~~~l~KPi  107 (123)
                      +++...+.+.-       ++..++.|+  ++.-|.
T Consensus       136 LVlVEpGtp~Gf~~I~~aR~~ll~~g~--hivAPC  168 (275)
T pfam09243       136 LVIVEPGTPAGWRRVLEARERLIAAGF--HIAAPC  168 (275)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCC--EEEEEC
T ss_conf             999918981799999999999986899--899719


No 489
>PRK06756 flavodoxin; Provisional
Probab=23.89  E-value=62  Score=14.61  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCEEEE------EEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             98999999999997898999988--9799999998279989999------504129695999999982857689959999
Q gi|254780476|r   11 NELNMKLFRDLIETSGYIALQTR--NGMEALELARQHKPDVIIM------DIQLQEISGLEITKQIKEDSELQEIPVIAV   82 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~v~~a~--~g~eal~~l~~~~~dlill------D~~mp~~dG~el~~~ir~~~~~~~ipii~~   82 (123)
                      .+...+.+.+-++..|.+|....  +... ...+.  .+|.+++      |-.||+ +-.+++..++.. .++..++-++
T Consensus         5 TE~mA~~Ia~g~~~~G~~V~~~~~~~~~~-~~~l~--~~d~~ilGspT~g~g~lp~-~~~~f~~~l~~~-~l~gk~~a~F   79 (138)
T PRK06756          5 TEEMADHIAGVIRETENEIEVIDIMDSPE-ASILE--QYDGIILGAYTWGDGDLPD-DFLDFYDAMDSI-DLTGKKAAVF   79 (138)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCC-HHHHH--HCCEEEEECCCCCCCCCCH-HHHHHHHHHHHC-CCCCCEEEEE
T ss_conf             99999999999997699079997026773-76897--5897999888768783777-899999998626-4479769999


Q ss_pred             EE----CCCH-----HHHHHHHHCCCCEEEECCC
Q ss_conf             92----4998-----9999999769988998798
Q gi|254780476|r   83 TA----FAMK-----GDEERIRKGGCEAYISKPI  107 (123)
Q Consensus        83 t~----~~~~-----~~~~~~~~~g~~~~l~KPi  107 (123)
                      -+    +.+.     ...++..+.|+.-+ ..|+
T Consensus        80 GsgD~~Yg~~g~av~~~~~~l~~~Ga~~~-~~~l  112 (138)
T PRK06756         80 GSCDSAYPKYGVAVDILIEKLQERGAAVV-LEGL  112 (138)
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHCCCEEC-CCCE
T ss_conf             33787666537579999999997799674-7876


No 490
>PRK09932 glycerate kinase II; Provisional
Probab=23.87  E-value=62  Score=14.60  Aligned_cols=71  Identities=18%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             CCCCEEEE-----EEE-CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE---EECCCCHHHHHHH
Q ss_conf             79989999-----504-12969599999998285768995999992499899999997699889---9879898999999
Q gi|254780476|r   45 HKPDVIIM-----DIQ-LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY---ISKPISLSIFMET  115 (123)
Q Consensus        45 ~~~dlill-----D~~-mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~---l~KPi~~~~L~~~  115 (123)
                      ..-|+|+.     |.+ +-+.-=..+++.-++    ..+|+|++.++-..+ .+...+.|++.+   +.+|.+.++-++.
T Consensus       283 ~~aDLVITGEG~~D~Qtl~GK~p~gVa~~A~~----~~~Pviai~G~~~~~-~~~~~~~Gi~a~fsi~~~~~sL~~a~~~  357 (381)
T PRK09932        283 QGAALVITGEGRIDSQTAGGKAPLGVASVAKQ----FNVPVIGIAGVLGDG-VEVVHQYGIDAVFSILPRLAPLAEVLAS  357 (381)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCCC-HHHHHHCCCCEEEECCCCCCCHHHHHHH
T ss_conf             78999998998776668898859999999998----499989996245888-7889864984999779999899999997


Q ss_pred             HHHHH
Q ss_conf             99974
Q gi|254780476|r  116 IKKYI  120 (123)
Q Consensus       116 i~~~l  120 (123)
                      -.+.|
T Consensus       358 a~~~L  362 (381)
T PRK09932        358 GETNL  362 (381)
T ss_pred             HHHHH
T ss_conf             99999


No 491
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.74  E-value=63  Score=14.59  Aligned_cols=84  Identities=21%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             CEEEEECCCHH----HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf             77899539989----9999999999789899998-------897999999982799899995041296959999999828
Q gi|254780476|r    3 KKVMIVEDNEL----NMKLFRDLIETSGYIALQT-------RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKED   71 (123)
Q Consensus         3 kkiLiVDD~~~----~~~~l~~~l~~~g~~v~~a-------~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~   71 (123)
                      |||-++.+|..    ....+++.++..|.++...       .+-...+..+++..||+|++-.  ...++..++++.++.
T Consensus       145 k~vav~~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~D~s~~v~~l~~~~pd~v~~~~--~~~~~~~~~~~~~~~  222 (344)
T cd06345         145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGF--SGNVGVLFTQQWAEQ  222 (344)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHC
T ss_conf             499999607245599999999998753975999996589764549999999865999999906--743699999999975


Q ss_pred             CCCCCCCEEEEEECCCHHH
Q ss_conf             5768995999992499899
Q gi|254780476|r   72 SELQEIPVIAVTAFAMKGD   90 (123)
Q Consensus        72 ~~~~~ipii~~t~~~~~~~   90 (123)
                      .-  ..+++.++.......
T Consensus       223 g~--~~~~~~~~~~~~~~~  239 (344)
T cd06345         223 KV--PIPTIGISVEGNSPA  239 (344)
T ss_pred             CC--CCCEEEEECCCCCHH
T ss_conf             99--988699974767888


No 492
>PRK05586 biotin carboxylase; Validated
Probab=23.64  E-value=63  Score=14.58  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf             987789953998999999999997898999988979999
Q gi|254780476|r    1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL   39 (123)
Q Consensus         1 m~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal   39 (123)
                      |.|||||..--+..+++++. +..+|++.....+..+..
T Consensus         1 M~~kvLIANRGEIA~Ri~rt-~~~lgi~tVavys~~D~~   38 (447)
T PRK05586          1 MFKKILIANRGEIAVRIIRA-CREMGIETVAVYSEIDKD   38 (447)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCCEEEECCCCCCC
T ss_conf             97549998987999999999-998399599991703367


No 493
>PRK06141 ornithine cyclodeaminase; Validated
Probab=23.19  E-value=64  Score=14.53  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=35.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
Q ss_conf             8778995399899999999999789899998897999999
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL   41 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~   41 (123)
                      -++|.|.+-++..++.+.+.++..|+.+..+.+.++|++-
T Consensus       150 i~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~av~~  189 (313)
T PRK06141        150 IKQVRVWGRNPAKAAALAAELREQGFDAEVVTDLEAAVRQ  189 (313)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             7589999389899999999998509975995899998610


No 494
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=23.13  E-value=65  Score=14.52  Aligned_cols=105  Identities=14%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEE--------ECCHHHHHHHHHHC-CCC--------------EEEEEEECCCCCHH
Q ss_conf             99539989999999999978989999--------88979999999827-998--------------99995041296959
Q gi|254780476|r    6 MIVEDNELNMKLFRDLIETSGYIALQ--------TRNGMEALELARQH-KPD--------------VIIMDIQLQEISGL   62 (123)
Q Consensus         6 LiVDD~~~~~~~l~~~l~~~g~~v~~--------a~~g~eal~~l~~~-~~d--------------lillD~~mp~~dG~   62 (123)
                      .+||..+...+.++..++..|+.+..        ..+..+.++.+..+ ..+              .-+.+-.++.+.|.
T Consensus        14 tLvDSe~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~pga   93 (221)
T PRK10563         14 TLVDSEVICSRAYVTMFREFGITLDLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEHVYRAEVARLFDTELEAIAGA   93 (221)
T ss_pred             CHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             84438999999999999986999899999998179979999999999739999999999999999999876358707139


Q ss_pred             -HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEE------------ECCCCHHHHHHHHHH
Q ss_conf             -99999982857689959999924998999999976998899------------879898999999999
Q gi|254780476|r   63 -EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI------------SKPISLSIFMETIKK  118 (123)
Q Consensus        63 -el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l------------~KPi~~~~L~~~i~~  118 (123)
                       ++++++       .+|+.++|+.............|..+|+            .|| +|+-++.++++
T Consensus        94 ~elL~~l-------~~~~aivS~~~~~~~~~~L~~~gl~~~F~d~ivs~ddv~~~KP-~Pdiyl~A~~~  154 (221)
T PRK10563         94 NALLESI-------TVPMCVVSNGPVSKMQHSLGKLGMLHYFPDKLFSGYDIQRWKP-DPALMFHAAEA  154 (221)
T ss_pred             HHHHHHC-------CCCCEEEECCHHHHHHHHHHHCCCHHHCCCEEECHHHCCCCCC-CCHHHHHHHHH
T ss_conf             9999966-------8997898498799999999975982516878971100678998-80999999998


No 495
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=23.06  E-value=65  Score=14.51  Aligned_cols=66  Identities=12%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf             979999999827998999950412969-599999998285768995999992499899999997699889
Q gi|254780476|r   34 NGMEALELARQHKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY  102 (123)
Q Consensus        34 ~g~eal~~l~~~~~dlillD~~mp~~d-G~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~  102 (123)
                      +..+-.+.+-+.-.|++++|.-=-+-. =++..++||+  .+.+++||+ ..-...+-.....++|++.+
T Consensus       227 d~~eR~~aLv~AGvDvlvIDtAHGhS~~vi~~vk~iK~--~~p~~~via-GNvaT~~~a~~Li~aGad~i  293 (479)
T PRK07807        227 DVAAKARALLEAGVDVLVIDTAHGHQEKMLEAIRAVRA--LDPGVPLVA-GNVVTAEGTRDLVEAGADIV  293 (479)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEE-EEHHHHHHHHHHHHCCCCEE
T ss_conf             58999999997699899975457664899999999984--089885787-43202999999997399976


No 496
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719   DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks.   AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , .  Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2.     Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=22.98  E-value=58  Score=14.80  Aligned_cols=21  Identities=29%  Similarity=0.635  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCCCCCEEE
Q ss_conf             599999998285768995999
Q gi|254780476|r   61 GLEITKQIKEDSELQEIPVIA   81 (123)
Q Consensus        61 G~el~~~ir~~~~~~~ipii~   81 (123)
                      |+|..+.|=++++++.||+|+
T Consensus       270 G~d~f~~~~~d~~~~~iP~~L  290 (318)
T TIGR00587       270 GFDAFRLLMQDERLKGIPIIL  290 (318)
T ss_pred             CHHHHHHHHCCCCCCCCCCEE
T ss_conf             668899974373101588366


No 497
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain.  DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.96  E-value=65  Score=14.50  Aligned_cols=82  Identities=21%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
Q ss_conf             98999999999997898999988979999999827998999950412969599999998285768995999992499899
Q gi|254780476|r   11 NELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGD   90 (123)
Q Consensus        11 ~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~   90 (123)
                      +......+...|+..|.....++.|        .+...+--+....|...-.++++.+|+.-.   +||+...+....+.
T Consensus       222 ~~~e~~~~~~~l~~~GvD~i~vs~G--------~~~~~~~~~~~~~p~g~~~~~a~~ir~~~~---~Pvi~~G~i~~p~~  290 (353)
T cd02930         222 TWEEVVALAKALEAAGADILNTGIG--------WHEARVPTIATSVPRGAFAWATAKLKRAVD---IPVIASNRINTPEV  290 (353)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCEEECCCCCCHHH
T ss_conf             9999999999999819999996377--------444668753345772366999999887548---34896599798999


Q ss_pred             HHHHHHCCCCEEE
Q ss_conf             9999976998899
Q gi|254780476|r   91 EERIRKGGCEAYI  103 (123)
Q Consensus        91 ~~~~~~~g~~~~l  103 (123)
                      .+++++.|..|++
T Consensus       291 ae~~l~~g~aD~V  303 (353)
T cd02930         291 AERLLADGDADMV  303 (353)
T ss_pred             HHHHHHCCCCCHH
T ss_conf             9999987996247


No 498
>PRK05693 short chain dehydrogenase; Provisional
Probab=22.93  E-value=65  Score=14.50  Aligned_cols=54  Identities=17%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             877899539989999999999978989999889799999998279989999504
Q gi|254780476|r    2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ   55 (123)
Q Consensus         2 ~kkiLiVDD~~~~~~~l~~~l~~~g~~v~~a~~g~eal~~l~~~~~dlillD~~   55 (123)
                      ||-|||.=-+.-.=..+...|...|+.|..+.--.+.++.+.+..+..+-+|+.
T Consensus         1 MKvvlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dvt   54 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVN   54 (274)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECC
T ss_conf             998999488858999999999987999999979999999998489918998469


No 499
>cd01146 FhuD Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=22.87  E-value=65  Score=14.49  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             99998279989999504129695999999982857689959999924998999999976998899879898999999999
Q gi|254780476|r   39 LELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK  118 (123)
Q Consensus        39 l~~l~~~~~dlillD~~mp~~dG~el~~~ir~~~~~~~ipii~~t~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~  118 (123)
                      ++.+..-.||+|+.....    +-+...++++..     |++++.......+....++. .-..+.|+=..+++.+.+++
T Consensus        58 ~E~i~~l~PDLIi~~~~~----~~~~~~~L~~ia-----p~v~~~~~~~~~~~~~~i~~-lg~~~g~~~~A~~~i~~~~~  127 (256)
T cd01146          58 LEAIAALKPDLILGSASR----HDEIYDQLSQIA-----PTVLLDSSPWLAEWKENLRL-IAKALGKEEEAEKLLAEYDQ  127 (256)
T ss_pred             HHHHHCCCCCEEEECCCC----CHHHHHHHHHHC-----CCCCCCCCCCHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHH
T ss_conf             999960899989964876----888999997348-----74555688988999999999-99996985899999999999


Q ss_pred             HHHC
Q ss_conf             7403
Q gi|254780476|r  119 YIGE  122 (123)
Q Consensus       119 ~l~~  122 (123)
                      .+.+
T Consensus       128 ~i~~  131 (256)
T cd01146         128 RLAE  131 (256)
T ss_pred             HHHH
T ss_conf             9999


No 500
>PRK00861 putative lipid kinase; Reviewed
Probab=22.86  E-value=65  Score=14.49  Aligned_cols=52  Identities=19%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             CCCEEEEECC-------CHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH---CCCCEEEE
Q ss_conf             9877899539-------989999999999978-9899998897999999982---79989999
Q gi|254780476|r    1 MLKKVMIVED-------NELNMKLFRDLIETS-GYIALQTRNGMEALELARQ---HKPDVIIM   52 (123)
Q Consensus         1 m~kkiLiVDD-------~~~~~~~l~~~l~~~-g~~v~~a~~g~eal~~l~~---~~~dlill   52 (123)
                      |+||+++|=+       .....+.++..|+.. .+++.......+|-+++++   +.+|+|+.
T Consensus         1 M~kr~~~IvNP~aG~g~~~~~~~~i~~~l~~~~~~~v~~T~~~~~a~~la~~a~~~~~d~vv~   63 (296)
T PRK00861          1 MTRSACLIFNPVAGQGNPEVDLALIRAILQPEMDLDIYLTTPEIGADALAQEAVERGAELIIA   63 (296)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             970799999867899864657999999997299689999578886999999998679989999


Done!